RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9152
(324 letters)
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 149 bits (380), Expect = 9e-45
Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 35/181 (19%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 116 --IMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+M ++ + F K+ GYISA++LR V+ LGE L
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVF------------DKDGNGYISAAELRHVMTNLGEKL 117
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAF 225
++EE+++MI+E D+DGDG+++ +EEFV++ M A A ++ +R+
Sbjct: 118 TDEEVDEMIREADIDGDGQVN--------YEEFVQM---MTAKGGGGGAAARKEVIRNKI 166
Query: 226 R 226
R
Sbjct: 167 R 167
Score = 47.5 bits (114), Expect = 7e-07
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +EAFR+FD KDG
Sbjct: 85 EIREAFRVFD-----------------------------------------------KDG 97
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+G I+ EL VM +LG+ +EE+ +M+ E DI+G
Sbjct: 98 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133
Score = 33.3 bits (77), Expect = 0.060
Identities = 2/15 (13%), Positives = 3/15 (20%)
Query: 13 EFKEAFRLFDKDGDG 27
+ R K
Sbjct: 161 VIRNKIRAIGKMARV 175
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 138 bits (349), Expect = 2e-40
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 35/163 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G ++
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEF 78
Query: 115 -SIMNHCGAVVNALD-----------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG 162
+M F KN G+I +L +L+ G
Sbjct: 79 LVMMVRQMKEDAKGKSEEELANCFRIF------------DKNADGFIDIEELGEILRATG 126
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
E ++EE+IED++K+ D + DGRID F+EF++++ +
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRID--------FDEFLKMMEGV 161
Score = 76.1 bits (188), Expect = 5e-17
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ ++EE++ +I+EVD DG G ID FEEF+ + M
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID--------FEEFLVM---MV 83
Query: 207 ATTEEKTADQEEKELRDAFR 226
+E + E+EL + FR
Sbjct: 84 RQMKEDAKGKSEEELANCFR 103
Score = 49.5 bits (119), Expect = 1e-07
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E FR+FD K+
Sbjct: 97 ELANCFRIFD-----------------------------------------------KNA 109
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG I EELG ++R+ G+ EE+++ ++++ D N
Sbjct: 110 DGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNN 145
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 135 bits (342), Expect = 2e-39
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 32/157 (20%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G ++
Sbjct: 9 IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 116 --IMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+M ++ + F ++ G ISA++LR V+ LGE L
Sbjct: 69 LSLMARKMKEQDSEEELIEAFKVF------------DRDGNGLISAAELRHVMTNLGEKL 116
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+++E+++MI+E D+DGDG I+ +EEFV ++
Sbjct: 117 TDDEVDEMIREADIDGDGHIN--------YEEFVRMM 145
Score = 70.2 bits (173), Expect = 5e-15
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G I+ +L V++ LG++ +E E++DMI EVD DG+G ID F EF+ +
Sbjct: 21 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID--------FPEFLSL- 71
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
M +E+ + E+EL +AF+
Sbjct: 72 --MARKMKEQDS---EEELIEAFK 90
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 134 bits (341), Expect = 3e-39
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
E EAF LFD + DG + EL M++LG + E+ +++E D G+ Y
Sbjct: 22 KQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDF 81
Query: 115 -SIMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+M + LD F ++ G IS +LR V + LGE L
Sbjct: 82 YIVMGEKILKRDPLDEIKRAFQLF------------DDDHTGKISIKNLRRVAKELGETL 129
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
++EE+ MI+E D+DGDG I+ EF+ I
Sbjct: 130 TDEELRAMIEEFDLDGDGEIN--------ENEFIAI 157
Score = 69.9 bits (172), Expect = 9e-15
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G++ +L+ ++ LG +L + EI D+I E D +G + +++F + MG
Sbjct: 38 GFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMK--------YDDFYIV---MG 86
Query: 207 ATTEEKTADQEEKELRDAFR 226
++ E++ AF+
Sbjct: 87 EKILKRDP---LDEIKRAFQ 103
Score = 49.5 bits (119), Expect = 1e-07
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E K AF+LFD D
Sbjct: 97 EIKRAFQLFD-----------------------------------------------DDH 109
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G I+ + L RV + LG+ +EEL+ M+EE D++G
Sbjct: 110 TGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDG 145
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 134 bits (340), Expect = 3e-39
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 32/157 (20%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D G N+
Sbjct: 5 KQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDF 64
Query: 115 -SIMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
++M + + + F + G IS +L+ V + LGE+L
Sbjct: 65 LTVMTQKMSEKDTKEEILKAFKLF------------DDDETGKISFKNLKRVAKELGENL 112
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++EE+++MI E D DGDG + +EF+ I+
Sbjct: 113 TDEELQEMIDEADRDGDGEVS--------EQEFLRIM 141
Score = 71.0 bits (175), Expect = 3e-15
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G I +L+ ++ LG + +EEI+ MI E+D +G G+++ F +F+ ++
Sbjct: 21 GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN--------FGDFLTVM---- 68
Query: 207 ATTEEKTADQEEKELRDAFR 226
T++ + ++E+ AF+
Sbjct: 69 --TQKMSEKDTKEEILKAFK 86
Score = 47.8 bits (115), Expect = 3e-07
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +AF+LFD D
Sbjct: 80 EILKAFKLFD-----------------------------------------------DDE 92
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G I+ + L RV + LG+ +EELQ+M++E D +G
Sbjct: 93 TGKISFKNLKRVAKELGENLTDEELQEMIDEADRDG 128
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 134 bits (339), Expect = 7e-39
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 36/159 (22%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING--------- 108
E +EAF LFD DG G+I +EL MR+LG ++EE+++M+ E+D +G
Sbjct: 27 KQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEF 86
Query: 109 -----KKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGE 163
K G D + G I+ DLR V + LGE
Sbjct: 87 LTMMTAKMGERDSREEILKAFRLFD--------------DDNSGTITIKDLRRVAKELGE 132
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+L+EEE+++MI E D + D ID +EF+ I+
Sbjct: 133 NLTEEELQEMIAEADRNDDNEID--------EDEFIRIM 163
Score = 70.3 bits (173), Expect = 7e-15
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G I A +L+ ++ LG + +EEI+ MI E+D DG G ID FEEF+ ++
Sbjct: 43 GTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTID--------FEEFLTMM---- 90
Query: 207 ATTEEKTADQEEKELRDAFR 226
T + +E+ AFR
Sbjct: 91 --TAKMGERDSREEILKAFR 108
Score = 49.1 bits (118), Expect = 2e-07
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +AFRLFD D
Sbjct: 102 EILKAFRLFD-----------------------------------------------DDN 114
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G+IT ++L RV + LG+ EEELQ+M+ E D N
Sbjct: 115 SGTITIKDLRRVAKELGENLTEEELQEMIAEADRND 150
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 141 bits (356), Expect = 1e-38
Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 52/221 (23%)
Query: 13 EFKEAFRLFDKDGDG------VQARH-------------FRQFFSFNNSFYTTTMLYSNS 53
+ + +F KD V+ F++ + +
Sbjct: 248 GYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLT 307
Query: 54 PVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGN 113
I EFKEAF LFDKDGDG+IT +ELG VMRSLGQ E ELQ M+ EVD +G +
Sbjct: 308 E-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 366
Query: 114 Y----SIMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL 161
+ ++M ++ + F K+ GYISA++LR V+ L
Sbjct: 367 FPEFLTMMARKMKDTDSEEEIREAFRVF------------DKDGNGYISAAELRHVMTNL 414
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GE L++EE+++MI+E D+DGDG+++ +EEFV+++
Sbjct: 415 GEKLTDEEVDEMIREADIDGDGQVN--------YEEFVQMM 447
Score = 104 bits (262), Expect = 2e-25
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNH 119
+ + +F KD T+ E+ +L + L+ +D + +
Sbjct: 248 GYIQERTIFFKDDGNYKTRAEVKFEGDTLVN-------RIELKGIDFKEDGNILGHKLEY 300
Query: 120 CGAVV----NALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+F F K+ G I+ +L V++ LG++ +E E++DMI
Sbjct: 301 NTRDQLTEEQIAEFKEAFSLF-----DKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 355
Query: 176 EVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFR 226
EVD DG+G ID F EF+ + M ++ + E+E+R+AFR
Sbjct: 356 EVDADGNGTID--------FPEFLTM---MARKMKDTDS---EEEIREAFR 392
Score = 37.2 bits (86), Expect = 0.006
Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 37/135 (27%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
Y + ++++ E + ++ +++ G IDF DG + +
Sbjct: 262 NYKTRAEVK------------FEGDTLVNRIELKG---IDFKEDGNILGHK-------LE 299
Query: 207 ATTEEKTADQEEKELRDAFREVEDIAD------EVSDCVRNTG------ELREFIVLREI 254
T ++ +++ E ++AF + D E+ +R+ G EL++ I E+
Sbjct: 300 YNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI--NEV 357
Query: 255 DSGGRLVVVRFDRFV 269
D+ G + F F+
Sbjct: 358 DADGN-GTIDFPEFL 371
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 134 bits (339), Expect = 2e-38
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 48/188 (25%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I KE F++ D D G+IT +EL ++ +G E E++ +++ DI+
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS-------- 60
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGHKNYR------------------GYISASDLRAVLQ 159
+D+G F + + H N GYI+ +++ +
Sbjct: 61 -------GTIDYGE----FIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACK 109
Query: 160 CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN-MGATTEEKTADQEE 218
G L + I+DMIKE+D D DG+ID + EF ++ G + ++
Sbjct: 110 DFG--LDDIHIDDMIKEIDQDNDGQID--------YGEFAAMMRKRKGNGGIGRRTMRKT 159
Query: 219 KELRDAFR 226
LRDA
Sbjct: 160 LNLRDALG 167
Score = 33.0 bits (76), Expect = 0.064
Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 5/70 (7%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
+ + D+D DG + F + ++A L D
Sbjct: 117 HIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRK----TLNLRDALGLVDNG 172
Query: 72 GDGSITKEEL 81
+ I
Sbjct: 173 SNQVIEGYFK 182
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 132 bits (335), Expect = 2e-38
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 36/161 (22%)
Query: 58 IVEFKEAFRLFDKDG-DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY-- 114
EFK AF +F DGSI+ +ELG+VMR LGQ EELQ+M++EVD +G ++
Sbjct: 17 KNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDE 76
Query: 115 --SIMNHCGAVVNALD-----------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL 161
+M + F KN GYI +L+ +LQ
Sbjct: 77 FLVMMVRSMKDDSKGKSEEELSDLFRMF------------DKNADGYIDLEELKIMLQAT 124
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GE ++E++IE+++K+ D + DGRID ++EF+E +
Sbjct: 125 GETITEDDIEELMKDGDKNNDGRID--------YDEFLEFM 157
Score = 75.7 bits (187), Expect = 7e-17
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G IS +L V++ LG++ + EE+++MI EVD DG G +D F+EF+ + M
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVD--------FDEFLVM---MV 82
Query: 207 ATTEEKTADQEEKELRDAFR 226
+ ++ + + E+EL D FR
Sbjct: 83 RSMKDDSKGKSEEELSDLFR 102
Score = 48.7 bits (117), Expect = 2e-07
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E + FR+FD K+
Sbjct: 96 ELSDLFRMFD-----------------------------------------------KNA 108
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG I EEL ++++ G+ E+++++++++ D N
Sbjct: 109 DGYIDLEELKIMLQATGETITEDDIEELMKDGDKNN 144
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 132 bits (334), Expect = 2e-38
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 42/161 (26%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
+ +E F++FDKD DG ++ EELG +RSLG+ EL + +++
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE--------- 54
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGH----------------KNYRGYISASDLRAVLQCL 161
+ F + ++ K G I ++LR +L L
Sbjct: 55 ------FDLATFKT---VYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNL 105
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G+ L+ E+E+++KEV V GDG I+ +E FV+++
Sbjct: 106 GDALTSSEVEELMKEVSVSGDGAIN--------YESFVDML 138
Score = 63.7 bits (156), Expect = 1e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G +S +L + L+ LG++ + E+ + +++ F +
Sbjct: 16 KDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD-----------LATFKTV- 63
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ T + KE+ DAFR
Sbjct: 64 --YRKPIKTPTE--QSKEMLDAFR 83
Score = 48.7 bits (117), Expect = 2e-07
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +AFR D K+G
Sbjct: 77 EMLDAFRALD-----------------------------------------------KEG 89
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+G+I + EL +++ +LG E++++++EV ++G
Sbjct: 90 NGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSG 125
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 132 bits (334), Expect = 3e-38
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 33/157 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I EFKEAF LFDKD GSI+ EL VMRSLG E E+ ++ E+D++G A +S
Sbjct: 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF 69
Query: 116 --IMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+M+ ++ F KN G ISA++L+ VL +GE L
Sbjct: 70 LALMSRQLKCNDSEQELLEAFKVF------------DKNGDGLISAAELKHVLTSIGEKL 117
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++ E+++M++EV DG G I+ ++F ++
Sbjct: 118 TDAEVDEMLREVS-DGSGEIN--------IKQFAALL 145
Score = 70.6 bits (174), Expect = 4e-15
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G ISAS+L V++ LG SE E+ D++ E+DVDG+ I+ F EF+ +
Sbjct: 22 KDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIE--------FSEFLAL- 72
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
M + + E+EL +AF+
Sbjct: 73 --MSRQLKCNDS---EQELLEAFK 91
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 131 bits (332), Expect = 5e-38
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 35/160 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
I E +EAFR FDKD DG I +LG MR++G E EL ++ +++++N ++
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 115 -SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQ-CL 161
+M G K R G IS S+LR ++ L
Sbjct: 70 VELMGPKLLAET-----------ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALL 118
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
G + +IE++I++VD++GDGR+D FEEFV +
Sbjct: 119 GHQVGHRDIEEIIRDVDLNGDGRVD--------FEEFVRM 150
Score = 73.3 bits (181), Expect = 4e-16
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
GYI+ DL ++ +G +E E+ ++ ++++++ G +D F++FVE++
Sbjct: 26 GYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVD--------FDDFVELMGPKL 77
Query: 207 ATTEEKTADQEEKELRDAFR 226
+ ELRDAFR
Sbjct: 78 LAETADMIGVK--ELRDAFR 95
Score = 45.6 bits (109), Expect = 2e-06
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 48/109 (44%)
Query: 1 MLYSNSPVFSIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVE 60
+L + + + E ++AFR FD
Sbjct: 77 LLAETADMIGVKELRDAFREFD-------------------------------------- 98
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRS-LGQFAREEELQQMLEEVDING 108
+GDG I+ EL MR+ LG ++++++ +VD+NG
Sbjct: 99 ---------TNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNG 138
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 128 bits (325), Expect = 6e-37
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 38/169 (22%)
Query: 58 IVEFKEAFRLFDK-DGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY-- 114
+ + AFR F+ +G G ++ +++G ++ LG + ++Q+++E D G ++
Sbjct: 12 VKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDS 71
Query: 115 --SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCL 161
I + + R GYIS +R +L L
Sbjct: 72 FKIIGARFLGEEV-----------NPEQMQQELREAFRLYDKEGNGYISTDVMREILAEL 120
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTE 210
E LS E+++ MI E+D DG G +D FEEF+ + M E
Sbjct: 121 DETLSSEDLDAMIDEIDADGSGTVD--------FEEFMGV---MTGGDE 158
Score = 72.6 bits (179), Expect = 1e-15
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G +S + +L+ LG ++ I +I E D G+G ID F+ F I
Sbjct: 29 GRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDID--------FDSFKII---GA 77
Query: 207 ATTEEKTADQE-EKELRDAFR 226
E+ ++ ++ELR+AFR
Sbjct: 78 RFLGEEVNPEQMQQELREAFR 98
Score = 49.1 bits (118), Expect = 2e-07
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E +EAFRL+D K+G
Sbjct: 92 ELREAFRLYD-----------------------------------------------KEG 104
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+G I+ + + ++ L + E+L M++E+D +G
Sbjct: 105 NGYISTDVMREILAELDETLSSEDLDAMIDEIDADG 140
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 128 bits (323), Expect = 1e-36
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 34/161 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML-EEVDINGKKAGNYS- 115
K+ F LFDK G G+I K+ LG +R++G + +Q ++ + + +
Sbjct: 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQ 62
Query: 116 ---IMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCL 161
++ ++A +K+ +++ G +S DLR +L L
Sbjct: 63 ITGLIEVNEKELDA----------TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGL 112
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
GE L++ E+++++K V+VD +G ID +++F+E V
Sbjct: 113 GEKLTDAEVDELLKGVEVDSNGEID--------YKKFIEDV 145
Score = 66.5 bits (163), Expect = 1e-13
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIK-EVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
G I+ L L+ +G + + + ++D+I + + + ++ ++
Sbjct: 19 GAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLT--------LDQITGLIEVN 70
Query: 206 GATTEEKTADQEEKELRDAFR 226
+ T + E + AF+
Sbjct: 71 EKELDATTKAKTE-DFVKAFQ 90
Score = 47.6 bits (114), Expect = 6e-07
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+F +AF++FD K+
Sbjct: 84 DFVKAFQVFD-----------------------------------------------KES 96
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G ++ +L ++ LG+ + E+ ++L+ V+++
Sbjct: 97 TGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDS 132
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 129 bits (325), Expect = 1e-36
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 28/175 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEEL-----GRVMRSLGQFAREEELQQMLEEVDINGKKAG 112
I K F D +G+G IT +E+ + L + + Q+ E G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 113 NY---------SIMNHCGAVVNALDFGSGGWWFKSKSGH------KNYRGYISASDLRAV 157
+ + K+ G I+ + +A
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 158 LQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
+ G S+E+ E + D+D G +D +E T + +
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDNAGDLD--------VDEMTRQHLGFWYTLDPE 185
Score = 59.4 bits (144), Expect = 1e-10
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 143 KNYRGYISASDLRA-----VLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEE 197
N G I+ ++ + + L + + + E G G +F +
Sbjct: 31 INGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCG---MEYGKEIAFPQ 87
Query: 198 FVEIVYNMGATTEEKTADQEE----KELRDAFR 226
F++ + + +K A E + F
Sbjct: 88 FLDGWKQLATSELKKWARNEPTLIREWGDAVFD 120
Score = 47.0 bits (112), Expect = 1e-06
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
F +FD KDG
Sbjct: 114 WGDAVFDIFD-----------------------------------------------KDG 126
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G+IT +E + G +E+ + D++
Sbjct: 127 SGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDN 162
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 129 bits (326), Expect = 2e-36
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I + F D D G+++ +E+ ++ +G ++ Q+L ++D N +Y+
Sbjct: 56 INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
Query: 116 --IMNHCGAVVNALDFGSGGWWFKSKSGH------------KNYRGYISASDLRAVLQC- 160
K + G IS +L+ +
Sbjct: 116 LAATID-----------------KQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRD 158
Query: 161 -LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ L ++ I+ +++EVD++GDG ID F EF+ +
Sbjct: 159 DIENPLIDKAIDSLLQEVDLNGDGEID--------FHEFMLM 192
Score = 71.5 bits (176), Expect = 4e-15
Identities = 14/84 (16%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ G +S+ ++ L+ +G +I +++++D + G+I + +F+
Sbjct: 68 VDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIH--------YTDFLA-- 117
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
AT +++T ++E F+
Sbjct: 118 ----ATIDKQTYLKKE-VCLIPFK 136
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 126 bits (319), Expect = 4e-36
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSI- 116
+FKEAF LFD+ GD IT ++G + R+LGQ E+ ++L A +
Sbjct: 7 ADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFE 66
Query: 117 --MNHCGAVVNALDFGSGGWWFKS-KSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+ A N D G+ + + + K G + ++LR VL LGE ++EEE+E++
Sbjct: 67 EFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEEL 126
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+K + D +G I+ +E FV+ + ++
Sbjct: 127 MKGQE-DSNGCIN--------YEAFVKHIMSV 149
Score = 66.8 bits (164), Expect = 8e-14
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ I+AS + + + LG++ + EI ++ + +FEEF+ +
Sbjct: 19 RTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEE------MNAAAITFEEFLPM- 71
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ A K E + + R
Sbjct: 72 --LQAAANNKDQGTFE-DFVEGLR 92
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 126 bits (319), Expect = 6e-36
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 33/155 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
I KE F + D D G IT EEL ++ +G +E E+ +++ D++ +Y
Sbjct: 26 IAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYK-- 83
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCLGEDLS 166
+F + + GYI+ +L+ + G +
Sbjct: 84 ----------EFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VE 131
Query: 167 EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ IE+++++VD D DGRID + EFV +
Sbjct: 132 DVRIEELMRDVDQDNDGRID--------YNEFVAM 158
Score = 69.9 bits (172), Expect = 1e-14
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ G I+ +L+A L+ +G +L E EI D+++ DVD G ID ++EF+
Sbjct: 38 ADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTID--------YKEFIA-- 87
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
AT ++E+ L AF
Sbjct: 88 ----ATLHLNKIERED-HLFAAFT 106
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 126 bits (318), Expect = 6e-36
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD--IN-------- 107
I EFKEAF + D++ DG I KE+L ++ S+G+ +E L+ M+ E IN
Sbjct: 6 IQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMF 65
Query: 108 GKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSE 167
G+K + D + G+I LR +L +G+ ++
Sbjct: 66 GEKLNGTDPEDVIRNAFACFD--------------EEASGFIHEDHLRELLTTMGDRFTD 111
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
EE+++M +E +D G + + EF I+
Sbjct: 112 EEVDEMYREAPIDKKGNFN--------YVEFTRIL 138
Score = 59.0 bits (144), Expect = 5e-11
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+N G+I DL +L +G++ ++E +E M+ E G I+ F F+ +
Sbjct: 18 QNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPIN--------FTMFLTM- 64
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
G E +R+AF
Sbjct: 65 --FGEKLNGTD---PEDVIRNAFA 83
Score = 47.1 bits (113), Expect = 8e-07
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+ AF FD++ G
Sbjct: 77 VIRNAFACFDEEASGF-------------------------------------------- 92
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I ++ L ++ ++G +EE+ +M E I+
Sbjct: 93 ---IHEDHLRELLTTMGDRFTDEEVDEMYREAPIDK 125
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 127 bits (321), Expect = 6e-36
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 41/159 (25%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD--IN-------- 107
+ EFKEAF+L D+D DG I+K ++ SLG+ E+EL M+ E IN
Sbjct: 56 VQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIF 115
Query: 108 -GKKAGNYSIMNHCGAVVNAL---DFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGE 163
+ AG +VNA D G G L+ L GE
Sbjct: 116 GDRIAGTDEEDV----IVNAFNLFDEGD---------------GKCKEETLKRSLTTWGE 156
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
S++E++ + E +DG+G ID ++F +I+
Sbjct: 157 KFSQDEVDQALSEAPIDGNGLID--------IKKFAQIL 187
Score = 59.6 bits (145), Expect = 8e-11
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++ G+IS +D+RA LG +E+E++ M+ E G I+ F F+ I
Sbjct: 68 QDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPIN--------FTMFLTI- 114
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
G EE + +AF
Sbjct: 115 --FGDRIAGTD---EEDVIVNAFN 133
Score = 45.8 bits (109), Expect = 5e-06
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 48/96 (50%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
AF LFD +G
Sbjct: 127 VIVNAFNLFD------------------------------------------------EG 138
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG +E L R + + G+ ++E+ Q L E I+G
Sbjct: 139 DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDG 174
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 125 bits (317), Expect = 7e-36
Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 33/156 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
+ EFKEAF LFD + G ITKE L V++ G +M E D G +
Sbjct: 5 VSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEF 64
Query: 116 --IMNHCGAVVNALD--------FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+M + D F GYI + L+ L LG+ L
Sbjct: 65 LSMMGRRMKQTTSEDILRQAFRTFD------------PEGTGYIPKAALQDALLNLGDRL 112
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
E + + + + G+I ++ F+
Sbjct: 113 KPHEFAEFLGITETE-KGQIR--------YDNFINT 139
Score = 70.6 bits (174), Expect = 4e-15
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G+I+ L+ VL+ G + +M E D G+G+I F EF+ ++
Sbjct: 17 SERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ--------FPEFLSMM 68
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
E LR AFR
Sbjct: 69 ------GRRMKQTTSEDILRQAFR 86
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 123 bits (312), Expect = 5e-35
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSI- 116
+ EFKEAF LFD+ GDG I + G VMR+LGQ E+ ++L + K+
Sbjct: 9 LEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFE 68
Query: 117 --MNHCGAVVNALDFGSGGWWFKS-KSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
+ AV G+ + + + K G + ++LR VL LGE ++EEE+E +
Sbjct: 69 TFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETV 128
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+ D +G I+ +E F++ + ++
Sbjct: 129 LAG-HEDSNGCIN--------YEAFLKHILSV 151
Score = 68.0 bits (167), Expect = 4e-14
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
G I S V++ LG++ + E+ ++ D FE F+ + +
Sbjct: 25 GKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDE------LKSRRVDFETFLPM---LQ 75
Query: 207 ATTEEKTADQEEKELRDAFR 226
A + + E + + FR
Sbjct: 76 AVAKNRGQGTYE-DYLEGFR 94
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 121 bits (307), Expect = 3e-34
Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD--IN-------- 107
I E KEAF + D D DG ++KE++ + LG+ ++EL ML+E +N
Sbjct: 17 IQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIF 76
Query: 108 GKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSE 167
K D + ++ ++ +L+ +G++ ++
Sbjct: 77 SDKLSGTDSEETIRNAFAMFD--------------EQETKKLNIEYIKDLLENMGDNFNK 122
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
+E+ KE V+G G+ D + +F + + + EE+
Sbjct: 123 DEMRMTFKEAPVEG-GKFD--------YVKFTAM---IKGSGEEE 155
Score = 59.1 bits (144), Expect = 6e-11
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ G++S D++A+ + LG ++E+ M+KE G ++ F F+ I
Sbjct: 29 VDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE----APGPLN--------FTMFLSIF 76
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+++ + E+ +R+AF
Sbjct: 77 ------SDKLSGTDSEETIRNAFA 94
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 121 bits (305), Expect = 7e-34
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 35/166 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF-AREEELQQMLEEVD----------I 106
I +FKEAF + D++ DG I K++L ++G+ + EEL M++E +
Sbjct: 24 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTM 83
Query: 107 NGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLS 166
G+K + LD + +G I S L +L G +
Sbjct: 84 FGEKLKGADPEDVIMGAFKVLD--------------PDGKGSIKKSFLEELLTTGGGRFT 129
Query: 167 EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
EEI++M D G +D ++ ++ E
Sbjct: 130 PEEIKNMWAAFPPDVAGNVD--------YKNICYVI--THGEDAEG 165
Score = 52.2 bits (126), Expect = 2e-08
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 143 KNYRGYISASDLRAVLQCLGEDL-SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+N G I DLR +G EE++ MIKE G I+ F F+ +
Sbjct: 36 QNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE----ASGPIN--------FTVFLTM 83
Query: 202 VYNMGATTEEKTADQE-EKELRDAFR 226
G EK + E + AF+
Sbjct: 84 ---FG----EKLKGADPEDVIMGAFK 102
Score = 46.4 bits (111), Expect = 2e-06
Identities = 13/96 (13%), Positives = 21/96 (21%), Gaps = 47/96 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
AF++ D DG G
Sbjct: 96 VIMGAFKVLDPDGKGS-------------------------------------------- 111
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I K L ++ + G EE++ M +
Sbjct: 112 ---IKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDV 144
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 120 bits (304), Expect = 8e-34
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 33/155 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD--IN-------- 107
+ E KEAF + D+D DG I E+L + SLG+ ++EL ML+E +N
Sbjct: 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLF 74
Query: 108 GKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSE 167
G+K + + D ++ +G+I L+ +L+ +G++ S+
Sbjct: 75 GEKVSGTDPEDALRNAFSMFD--------------EDGQGFIPEDYLKDLLENMGDNFSK 120
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
EEI+++ K+ + + + + + + V+I
Sbjct: 121 EEIKNVWKDAPLK-NKQFN--------YNKMVDIK 146
Score = 59.5 bits (145), Expect = 4e-11
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++ G+I DL+ + LG ++E+ M+KE G+++ F F+ +
Sbjct: 27 QDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC----PGQLN--------FTAFLTL- 73
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
G E LR+AF
Sbjct: 74 --FGEKVSGTDP---EDALRNAFS 92
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 121 bits (306), Expect = 1e-33
Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 36/188 (19%)
Query: 44 YTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
T S + E E FR D DG G+I+ EL + S G +++L
Sbjct: 12 STGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHM 71
Query: 104 VDINGKKAGNY----SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQ 159
D N + + + ++ F+ + + G + ++++RA L
Sbjct: 72 YDKNHSGEITFDEFKDLHHFILSMREG---------FRKRD--SSGDGRLDSNEVRAALL 120
Query: 160 CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEK 219
G +SE+ + ++++ D G + F+++VE+ +
Sbjct: 121 SSGYQVSEQTFQALMRKFDRQRRGSLG--------FDDYVELSIFV-------------C 159
Query: 220 ELRDAFRE 227
+R+ F
Sbjct: 160 RVRNVFAF 167
Score = 63.9 bits (156), Expect = 3e-12
Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 66/197 (33%)
Query: 9 FSIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
FS+ ++ ++DK+ G F +F ++ I+ +E FR
Sbjct: 60 FSLATTEKLLHMYDKNHSG--EITFDEFKDLHHF---------------ILSMREGFRKR 102
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALD 128
D GDG + E+ + S G E+ Q ++ + D
Sbjct: 103 DSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQR-------------------- 142
Query: 129 FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G + Y+ + + + ++ D + G++ F
Sbjct: 143 -----------RGSLGFDDYV---------ELS---IFVCRVRNVFAFYDRERTGQVTFT 179
Query: 189 GDGYFSFEEFVEIVYNM 205
F+ F+ ++
Sbjct: 180 ------FDTFIGGSVSI 190
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 119 bits (301), Expect = 2e-33
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 42/173 (24%)
Query: 58 IVEFKEAFRLFD--KDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I + K+ F LFD DG++ +LG V R LG R E++ + G+K+ +
Sbjct: 8 IDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSLPFE 66
Query: 116 ----IMNHCGAVVNALDFGSGGWWFKSKSGH------------KNYRGYISASDLRAVLQ 159
+ G + +G+IS ++LR VL
Sbjct: 67 EFLPAYEGL---------------MDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLT 111
Query: 160 CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
LGE LS+E+++++IK D+ D +G +E+FV+ V M +K
Sbjct: 112 ALGERLSDEDVDEIIKLTDLQED------LEGNVKYEDFVKKV--MAGPYPDK 156
Score = 64.1 bits (157), Expect = 9e-13
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G + A L V +CLG + E++ + G+ + FEEF+
Sbjct: 22 DGRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKMGEKSLP--------FEEFLPA- 71
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ + + +AF+
Sbjct: 72 --YEGLMDCEQG--TFADYMEAFK 91
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 120 bits (303), Expect = 2e-33
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 40/161 (24%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
+ + K F + D+DG G ITKE+L + + G +L+++D +G +Y+
Sbjct: 51 VEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL-PYNFDLLLDQIDSDGSGKIDYTEF 109
Query: 116 IM----------NHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
I D + G I+ ++L +L +
Sbjct: 110 IAAALDRKQLSKKLIYCAFRVFD--------------VDNDGEITTAELAHILYNGNKKG 155
Query: 166 S-----EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ ++ MI++VD + DG+ID F EF E+
Sbjct: 156 NITQRDVNRVKRMIRDVDKNNDGKID--------FHEFSEM 188
Score = 63.4 bits (155), Expect = 3e-12
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++ +GYI+ L+ L+ G L + ++ ++D DG G+ID + EF+
Sbjct: 63 EDGKGYITKEQLKKGLEKDGLKL-PYNFDLLLDQIDSDGSGKID--------YTEFI--- 110
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
A ++ ++ + AFR
Sbjct: 111 ----AAALDRKQLSKK-LIYCAFR 129
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 119 bits (300), Expect = 4e-33
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 37/162 (22%)
Query: 58 IVEFKEAFRLFD--KDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
I E +E F LFD DG + ++G ++R LG E ++ Q G+KA
Sbjct: 8 IEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLE 66
Query: 116 ----IMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQC 160
I + + + + G IS++++R VL+
Sbjct: 67 EILPIYEEMSS-------------KDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKM 113
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
LGE ++E++ D+ D+ D DG +E+ ++ V
Sbjct: 114 LGERITEDQCNDIFTFCDIRED------IDGNIKYEDLMKKV 149
Score = 66.8 bits (164), Expect = 1e-13
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G + A+ + +L+CLG + +E ++ G+ EE + I
Sbjct: 22 DGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYK--------LEEILPI- 71
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ + T + E +AF+
Sbjct: 72 --YEEMSSKDTGTAAD-EFMEAFK 92
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 118 bits (297), Expect = 4e-33
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 42/156 (26%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING------------- 108
+ F+ D +GDG+++ EE+ + E+ LQ + + +D +G
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 109 ---KKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
+ + +D + G ++ ++ + + G
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLMD--------------VDGDGKLTKEEVTSFFKKHG--- 105
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
E++ + + + D +GDG I EEF+E
Sbjct: 106 -IEKVAEQVMKADANGDGYIT--------LEEFLEF 132
Score = 76.4 bits (189), Expect = 2e-17
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N G +S +++A + +E+ ++ + K +D DG+G ID EF +
Sbjct: 11 VNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEID--------QNEFAKF- 61
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
G+ + +D + L+ ++
Sbjct: 62 --YGSIQGQDLSDDKI-GLKVLYK 82
Score = 67.6 bits (166), Expect = 3e-14
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
K ++L D DGDG +TKEE+ + G E++ + + + D NG
Sbjct: 76 GLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANG 120
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 117 bits (296), Expect = 8e-33
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 41/160 (25%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
+K+AF LFD+ G G I K +G ++R+ GQ E+ E++ +
Sbjct: 4 DSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEIT----EIESTLPAEVDMEQF 59
Query: 116 --IMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCLG 162
++N F + + G I +LR VL LG
Sbjct: 60 LQVLNRPNG-------------FDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLG 106
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E LS EE+++++K V V DG ++ + +FV+++
Sbjct: 107 EKLSNEEMDELLKGVPVK-DGMVN--------YHDFVQMI 137
Score = 61.4 bits (150), Expect = 7e-12
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
++ G I + + +L+ G++ + E I E++ +D E+F+++
Sbjct: 16 RHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVD--------MEQFLQV- 62
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ E E F+
Sbjct: 63 --LNRPNGFDMPGDPE-EFVKGFQ 83
Score = 44.4 bits (106), Expect = 5e-06
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 47/95 (49%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
EF + F++FD KD
Sbjct: 77 EFVKGFQVFD-----------------------------------------------KDA 89
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDIN 107
G I EL V+ SLG+ EE+ ++L+ V +
Sbjct: 90 TGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK 124
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 117 bits (296), Expect = 3e-32
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 28/175 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEEL-----GRVMRSLGQFAREEELQQMLEEVDINGKKAG 112
I K F D + +G I+ +E+ V+ +LG + + + E G
Sbjct: 15 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 74
Query: 113 NYS---------IMNHCGAVVNALDFGSGGWWFKSKSGH------KNYRGYISASDLRAV 157
+ + K+ G I+ + +A
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
Query: 158 LQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
+ G S E+ E+ + D+D G++D +E T +
Sbjct: 135 TKAAGIIQSSEDCEETFRVCDIDESGQLD--------VDEMTRQHLGFWYTMDPA 181
Score = 67.9 bits (166), Expect = 8e-14
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 13 EFKEAFRLFDKDGDGVQARH---FRQFFSFNNSFYTTTMLYS--NSPVFLIVEFKEAFRL 67
+ + G G++ + + T + N P + + F +
Sbjct: 58 KRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDI 117
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DKD +G+IT +E ++ G E+ ++ DI+
Sbjct: 118 VDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDE 158
Score = 53.7 bits (129), Expect = 8e-09
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 147 GYISASDL-----RAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
G IS ++ V+ LG + + E G G + ++E
Sbjct: 31 GKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAG---MKYGVETDWPAYIEG 87
Query: 202 VYNMGATTEEKTADQEEKELRDAFREVEDIAD 233
+ EK A E +R + DI D
Sbjct: 88 WKKLATDELEKYAKNEPTLIRIWGDALFDIVD 119
Score = 42.5 bits (100), Expect = 6e-05
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
F + DKD +G + ++ + ++ + +E FR+ D D
Sbjct: 110 WGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSE------------DCEETFRVCDID 157
Query: 72 GDGSITKEELGRVMR 86
G + +E+ R
Sbjct: 158 ESGQLDVDEMTRQHL 172
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 115 bits (291), Expect = 4e-32
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 24/150 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
+ E +K G I+ + R LG + +++ E N +
Sbjct: 14 VDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYL 73
Query: 118 NHCGAVVNALD-----FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIED 172
+ C + ++ F N GY++ S ++ +L G+ L+++E D
Sbjct: 74 SICVHDKDNVEELIKMF---------AHFDNNCTGYLTKSQMKNILTTWGDALTDQEAID 124
Query: 173 MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ + ID ++ F E +
Sbjct: 125 ALNA--FSSEDNID--------YKLFCEDI 144
Score = 53.8 bits (130), Expect = 3e-09
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 37/140 (26%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ G IS + + LG S + + + + + +E+++E
Sbjct: 26 KSSGGKISIDNASYNARKLGLAPSSIDEKKIKELY----GDNLT--------YEQYLEY- 72
Query: 203 YNMGATTEEKTADQEEKELRDAFREVEDI-------ADEVSDCVRNTG------ELREFI 249
+ +K +EL F D ++ + + G E + +
Sbjct: 73 --LSICVHDKD---NVEELIKMFA-HFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDAL 126
Query: 250 VLREIDSGGRLVVVRFDRFV 269
S + + F
Sbjct: 127 --NAFSSEDN---IDYKLFC 141
Score = 43.7 bits (104), Expect = 1e-05
Identities = 10/97 (10%), Positives = 20/97 (20%), Gaps = 47/97 (48%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E + F FD +
Sbjct: 85 ELIKMFAHFD-----------------------------------------------NNC 97
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
G +TK ++ ++ + G ++E L
Sbjct: 98 TGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDN 134
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 119 bits (300), Expect = 2e-31
Identities = 37/269 (13%), Positives = 73/269 (27%), Gaps = 74/269 (27%)
Query: 13 EFKEAFRLFDKDGDGV-----------------QARHFRQFFSFNNSFYTTTMLYSNSPV 55
E K +D+ A ++ S Y+
Sbjct: 52 EQKAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRP 111
Query: 56 FL-------IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
++ F G G + ++L +V+ E L+++ V+ +
Sbjct: 112 SKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDT 171
Query: 109 KKAGNY----SIMNHCGAVVNA---LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL 161
K +Y ++ N A+V +D N G +S + R L
Sbjct: 172 KGRMSYITLVAVANDLAALVADFRKID--------------TNSNGTLSRKEFREHFVRL 217
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDF----------------------NGDGYFSFEEFV 199
G D + + + + D D + F + G S EE
Sbjct: 218 GFD-KKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQ 276
Query: 200 EIVYNMGATTEEKTADQEEKELRDAFREV 228
+++ + + K+ F V
Sbjct: 277 KVLEDAHIP------ESARKKFEHQFSVV 299
Score = 113 bits (284), Expect = 2e-29
Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 60/227 (26%)
Query: 11 IVEFKEAFRLFDKDGDGV--------------------QARHFRQFFSFNNS-------F 43
++ F G G + +
Sbjct: 121 TNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITL 180
Query: 44 YTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
+ FR D + +G+++++E LG F ++ +
Sbjct: 181 VAVAND--------LAALVADFRKIDTNSNGTLSRKEFREHFVRLG-FDKKSVQDALFRY 231
Query: 104 VDINGKKAGNYS----IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQ 159
D + +S + + + K+ G +S +++ VL+
Sbjct: 232 ADEDESDDVGFSEYVHLGLCLLVLRIL---------YAFADFDKS--GQLSKEEVQKVLE 280
Query: 160 CLG-EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+ + ++ E VDVD + ++EFV +V M
Sbjct: 281 DAHIPESARKKFEHQFSVVDVDDSKSLS--------YQEFVMLVLLM 319
Score = 38.6 bits (90), Expect = 0.002
Identities = 9/100 (9%), Positives = 24/100 (24%), Gaps = 48/100 (48%)
Query: 10 SIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFD 69
++ + + D
Sbjct: 251 CLLVLRILYAFAD----------------------------------------------- 263
Query: 70 KDGDGSITKEELGRVMRSLG-QFAREEELQQMLEEVDING 108
D G ++KEE+ +V+ + ++ + VD++
Sbjct: 264 FDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDD 303
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 113 bits (286), Expect = 7e-31
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 30/156 (19%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
I E F D + +GS++ E+ V+ S+G ++ ++ ++L+ +DIN + Y+
Sbjct: 38 IKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDINDRGNITYTEF 95
Query: 116 --IMNH--------CGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDL 165
A N +D K+ GYIS SD+ +++ + L
Sbjct: 96 MAGCYRWKNIESTFLKAAFNKID--------------KDEDGYISKSDIVSLVH--DKVL 139
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+I++ V G + SF+EF +
Sbjct: 140 DNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175
Score = 58.5 bits (142), Expect = 1e-10
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N+ G +S ++ VL +G + + +I +++ +D++ G I + EF+
Sbjct: 50 TNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRGNIT--------YTEFM--- 96
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
A + L+ AF
Sbjct: 97 ----AGCYRWKNIEST-FLKAAFN 115
Score = 39.6 bits (93), Expect = 5e-04
Identities = 11/96 (11%), Positives = 18/96 (18%), Gaps = 49/96 (51%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
K AF D KD
Sbjct: 109 FLKAAFNKID-----------------------------------------------KDE 121
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG I+K ++ ++ ++ V
Sbjct: 122 DGYISKSDIVSLVHDKV--LDNNDIDNFFLSVHSIK 155
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 116 bits (291), Expect = 8e-31
Identities = 34/192 (17%), Positives = 69/192 (35%), Gaps = 35/192 (18%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE------EELQQMLEEVDINGKKAGN 113
+F E + FD DG G + +EL +++ L Q ++ E++ +++ G
Sbjct: 17 QFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDD--GK 74
Query: 114 YSIMNHCGAVVNALDFGSGGWWFKSKSGH----------KNYRGYISASDLRAVLQCLGE 163
I+ + +F + KS ++ G+I +L+ L+ L E
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLE 134
Query: 164 DLS--------EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN-MGATTEEKTA 214
+ E + M+K D + DG+++ E ++ + +
Sbjct: 135 KANKTVDDTKLAEYTDLMLKLFDSNNDGKLE--------LTEMARLLPVQENFLLKFQGI 186
Query: 215 DQEEKELRDAFR 226
KE AF
Sbjct: 187 KMCGKEFNKAFE 198
Score = 104 bits (261), Expect = 2e-26
Identities = 38/254 (14%), Positives = 68/254 (26%), Gaps = 58/254 (22%)
Query: 3 YSNSPVFSIVEFKEAFRLFDK--------------------------------------- 23
+ S + + +F E + FD
Sbjct: 7 HLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQ 66
Query: 24 -DGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELG 82
+ + +L+ + EF + +R +D D G I EEL
Sbjct: 67 YGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELK 126
Query: 83 RVMRSLGQFA--------REEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGW 134
++ L + A E ML+ D N + M V G
Sbjct: 127 NFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGI 186
Query: 135 WFKS-------KSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF 187
+ ++ GYI ++L A+L+ L E +E + I +
Sbjct: 187 KMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST---YKKNIMAL 243
Query: 188 NGDGYFSFEEFVEI 201
+ G + I
Sbjct: 244 SDGGKLYRTDLALI 257
Score = 59.9 bits (145), Expect = 1e-10
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 147 GYISASDLRAVLQCLGEDLSE------EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
GY+ +L+ ++Q L + + E++ + + DG+I +
Sbjct: 31 GYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV-----ELAHVLP 85
Query: 201 IVYNMGATTEEKTADQEEKELRDAFRE 227
N + E E +R+
Sbjct: 86 TEENFLLLFRCQQLKSCE-EFMKTWRK 111
Score = 41.8 bits (98), Expect = 1e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR-LFDK 70
EF +AF L+D+DG+G + + N I + +
Sbjct: 192 EFNKAFELYDQDGNGYIDENELDALL--------KDLCEKNKQELDINNISTYKKNIMAL 243
Query: 71 DGDGSITKEELGRVMRS 87
G + + +L ++ +
Sbjct: 244 SDGGKLYRTDLALILSA 260
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 111 bits (280), Expect = 7e-30
Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 48/168 (28%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEEL-----------GRVMRSLGQFAREEELQQMLEEVDI 106
E + FR D +GDG + ++EL G + L E E+ +L+ VD
Sbjct: 39 TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDF 98
Query: 107 NGKKAGNYS----IMNHCGAVVNA---------LDFGSGGWWFKSKSGHKNYRGYISASD 153
+ YS + +++ D + G I+ +
Sbjct: 99 DRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFD--------------SDGSGKITNEE 144
Query: 154 LRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
L + ++ +E +++E D + DG +D FEEFVE+
Sbjct: 145 LGRLFG--VTEVDDETWHQVLQECDKNNDGEVD--------FEEFVEM 182
Score = 42.7 bits (101), Expect = 4e-05
Identities = 20/96 (20%), Positives = 25/96 (26%), Gaps = 49/96 (51%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
AF+ FD DG
Sbjct: 124 RLLAAFQQFD-----------------------------------------------SDG 136
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
G IT EELGR+ +E Q+L+E D N
Sbjct: 137 SGKITNEELGRLFGVTE--VDDETWHQVLQECDKNN 170
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 50/115 (43%)
Query: 155 RAVLQCLGEDLSEEEIEDMIKEV----DVDGDGRI------------------------- 185
+A + +G L+ E + ++ D +GDG++
Sbjct: 23 QAAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDS 82
Query: 186 --------------DFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFR 226
DF+ +GY + EFV +++ E L AF+
Sbjct: 83 SQIEAEVDHILQSVDFDRNGYIEYSEFVT------VCMDKQLLLSRE-RLLAAFQ 130
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 112 bits (281), Expect = 7e-30
Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 45/190 (23%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING--------- 108
I FR D+DG S+ +E + + LG + E + + + D NG
Sbjct: 36 IQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95
Query: 109 ----KKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQC---- 160
+ + + A LD ++ G ++ DLR V
Sbjct: 96 LRALRPPMSQAREAVIAAAFAKLD--------------RSGDGVVTVDDLRGVYSGRAHP 141
Query: 161 ---LGEDLSEEEIEDMIKEVD-VDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQ 216
GE +E + + D + DG++ EF + + A+ ++
Sbjct: 142 KVRSGEWTEDEVLRRFLDNFDSSEKDGQVT--------LAEFQDYYSGVSASMNTD--EE 191
Query: 217 EEKELRDAFR 226
+ A++
Sbjct: 192 FVAMMTSAWQ 201
Score = 57.0 bits (138), Expect = 6e-10
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E + R +D++G G +F L AF D+ G
Sbjct: 74 EAEGVCRKWDRNGSG--TLDLEEFL---------RALRPPMSQAREAVIAAAFAKLDRSG 122
Query: 73 DGSITKEELGRVMRS-------LGQFAREEELQQMLEEVDINGK 109
DG +T ++L V G++ +E L++ L+ D + K
Sbjct: 123 DGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEK 166
Score = 42.3 bits (100), Expect = 6e-05
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDK- 70
AF D+ GDG V R +S + + FD
Sbjct: 110 VIAAAFAKLDRSGDGVVTVDDLRGVYSGRAH-----PKVRSGEWTEDEVLRRFLDNFDSS 164
Query: 71 DGDGSITKEELGRVMRSLGQ-FAREEELQQMLEEV 104
+ DG +T E + +EE M+
Sbjct: 165 EKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSA 199
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 105 bits (264), Expect = 1e-27
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 23/174 (13%)
Query: 56 FLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF---------AREEELQQMLEEVDI 106
+ + + K + D GDG I++E+ + + + +E ++ +++ +
Sbjct: 11 YHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGL 70
Query: 107 NGKKAGNYS-----IMNHCGAVVNALDFGSGGWWFKS-KSGHKNYRGYISASDLRAVLQC 160
+ + + + + GY+S + +A LQ
Sbjct: 71 APGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQA 130
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTA 214
+G DL++++ +D + +G+I +EF+ V + EE
Sbjct: 131 VGPDLTDDKAITCFNTLDFNKNGQIS--------RDEFLVTVNDFLFGLEETAL 176
Score = 67.1 bits (164), Expect = 1e-13
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 4/96 (4%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
EF + +++ + D D
Sbjct: 60 EFLRVADQLGLAPGV--RISVEEAAVNATDSLLKMK--GEEKAMAVIQSLIMYDCIDTDK 115
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG ++ E ++++G +++ +D N
Sbjct: 116 DGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNK 151
Score = 48.2 bits (115), Expect = 6e-07
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 17/89 (19%)
Query: 147 GYISASDLRAVLQCLGEDLSE---------EEIEDMIKEVDVDGDGRIDFNGDGYFSFEE 197
G+IS D + + + +E + ++ + RI S EE
Sbjct: 29 GFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI--------SVEE 80
Query: 198 FVEIVYNMGATTEEKTADQEEKELRDAFR 226
+ + + + +
Sbjct: 81 AAVNATDSLLKMKGEEKAMAVIQSLIMYD 109
Score = 46.3 bits (110), Expect = 3e-06
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
++++ + D D DG V F+ F T + F
Sbjct: 100 AVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDD------------KAITCFNTL 147
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
D + +G I+++E + E L
Sbjct: 148 DFNKNGQISRDEFLVTVNDFLFGLEETALANAF 180
Score = 30.1 bits (68), Expect = 0.58
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
E + M + R+D GDG+ S E++ I + K + ++ +E R
Sbjct: 6 ESERAYHLRKMKTRMQ-----RVDVTGDGFISREDYELIAVRIA--KIAKLSAEKAEETR 58
Query: 223 DAFREVEDIADEVSDCVRNTGELREFIV-----LREIDSGGRLVVVRFDRFVFR 271
F V D + E V L ++ + + V ++
Sbjct: 59 QEFLRVADQLGLAPG---VRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYD 109
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 104 bits (262), Expect = 2e-27
Identities = 31/175 (17%), Positives = 67/175 (38%), Gaps = 40/175 (22%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFA-REEELQQMLEEVDINGKKAGNY---- 114
F+ DKD G I+ EL + + + ++ ++ D K N+
Sbjct: 8 FLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFT 67
Query: 115 SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMI 174
+ + N F++ ++ G I ++L+ L G LS++ + +I
Sbjct: 68 GVWKYITDWQNV---------FRTYD--RDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116
Query: 175 KEVDVDGDGRIDF----------------------NGDGY--FSFEEFVEIVYNM 205
++ D G G+I F + DG+ S+E+++ +V+++
Sbjct: 117 RKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 171
Score = 55.3 bits (134), Expect = 2e-09
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 9 FSIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
F+ V + +FD++ +F +F I +++ FR +
Sbjct: 41 FNPVTVRSIISMFDRENKA--GVNFSEFTGVWKY---------------ITDWQNVFRTY 83
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
D+D G I K EL + + G ++ ++ + D G+ +
Sbjct: 84 DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAF 129
Score = 37.2 bits (87), Expect = 0.003
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSPVFLI----- 58
I +++ FR +D+D G + +Q + ++ F+ + + I
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 59 -------VEFKEAFRLFDKDGDGSIT 77
+ FR +D D DG I
Sbjct: 133 IQGCIVLQRLTDIFRRYDTDQDGWIQ 158
Score = 28.0 bits (63), Expect = 3.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQF 36
+ FR +D D DG + Q+
Sbjct: 141 RLTDIFRRYDTDQDGWIQVSYEQY 164
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 102 bits (257), Expect = 2e-26
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 29/177 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQF--AREEELQQMLEEVDINGKKA---G 112
+ + F FD D DG + +E+ + Q A +E++++M + V +
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94
Query: 113 NYSI--------MNHCGAVVNALDFGSGGWWFKSKSGH------KNYRGYISASDLRAVL 158
+ + S + G + +L+ ++
Sbjct: 95 VNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM 154
Query: 159 QCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTAD 215
+ + +E ++ D D G+++ E V + + D
Sbjct: 155 KAFD--VPQEAAYTFFEKADTDKSGKLE--------RTELVHLFRKFWMEPYDPQWD 201
Score = 62.1 bits (151), Expect = 1e-11
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 11 IVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLY--SNSPVFLIVEFKEAFRLF 68
+ F + + N F P + + + +
Sbjct: 80 RDAVRVFFLHKGVEPVNGL--LREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVL 137
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
D DGDG++ +EL +M++ +E E+ D +
Sbjct: 138 DDDGDGTVDVDELKTMMKAFDV--PQEAAYTFFEKADTDK 175
Score = 48.3 bits (115), Expect = 7e-07
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 147 GYISASDLRAVLQCLGEDL--SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
G + ++ + + + ++E++E M V E++VE
Sbjct: 51 GKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVR-VFFLHKGVEPVNGLLREDWVEANRV 109
Query: 205 MGATTEEKTADQEEKELRDAFREVEDIADE 234
E+ E + D+ D+
Sbjct: 110 FAEAERERERRGEPSLIALLSNSYYDVLDD 139
Score = 40.2 bits (94), Expect = 4e-04
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 15/73 (20%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ + D DGDG V + + F D D
Sbjct: 131 NSYYDVLDDDGDGTVDVDELKTMMKAFD--------------VPQEAAYTFFEKADTDKS 176
Query: 74 GSITKEELGRVMR 86
G + + EL + R
Sbjct: 177 GKLERTELVHLFR 189
Score = 34.4 bits (79), Expect = 0.024
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 163 EDLSEEEIEDMIKEV----DVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEE 218
EDL + + + + D+D DG++ +E + M D++
Sbjct: 28 EDLHPKMLSR-LYKRFDTFDLDSDGKM--------EMDEVLYWPDRMRQLVNAT--DEQV 76
Query: 219 KELRDAFREVEDIADEVSDCVRNTGELREFIVL 251
+++RDA R N +++
Sbjct: 77 EKMRDAVRVFFLHKGVEPV---NGLLREDWVEA 106
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 97.7 bits (244), Expect = 5e-25
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 51/170 (30%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
I + F+ D D GS++ EE + L Q +Q++++ D +G ++
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQ---NPLVQRVIDIFDTDGNGEVDFKEF 60
Query: 115 -SIMNHCGAVVNALDFGSGGWWFKSKSGH-------------KNYRGYISASDLRAVLQC 160
++ S G + GYIS +L VL+
Sbjct: 61 IEGVSQ-----------------FSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM 103
Query: 161 L-GEDLSEEE----IEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+ G +L + + ++ I D DGDGRI FEEF +V +
Sbjct: 104 MVGNNLKDTQLQQIVDKTIINADKDGDGRIS--------FEEFCAVVGGL 145
Score = 47.2 bits (113), Expect = 7e-07
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ G +S + + L E ++ +I D DG+G +D F+EF+E V
Sbjct: 17 LDNSGSLSVEEFMS----LPELQQNPLVQRVIDIFDTDGNGEVD--------FKEFIEGV 64
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
+ +E++LR AFR
Sbjct: 65 SQFSVKGD------KEQKLRFAFR 82
Score = 41.4 bits (98), Expect = 8e-05
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSN--SPVFLIVEFKEAFRLFDK 70
+ + AFR++D D DG + S F M+ N L + DK
Sbjct: 76 KLRFAFRIYDMDKDG--------YISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADK 127
Query: 71 DGDGSITKEELGRVMRSL 88
DGDG I+ EE V+ L
Sbjct: 128 DGDGRISFEEFCAVVGGL 145
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 98.7 bits (246), Expect = 7e-25
Identities = 28/166 (16%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
++ FR D++ G +++ +L + + +L +++E +G + ++
Sbjct: 28 LLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAV---NPLGDRIIESFFPDGSQRVDFPGF 83
Query: 115 -SIMNHCGAVVNALDFGSGGWWFKSKSGH------------KNYRGYISASDLRAVLQCL 161
++ H V + + + + G IS ++ VL+ +
Sbjct: 84 VRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLM 143
Query: 162 -GEDLSEEEIED----MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G ++EE++E+ ++E D DGDG + F EF + +
Sbjct: 144 VGVQVTEEQLENIADRTVQEADEDGDGAVS--------FVEFTKSL 181
Score = 45.1 bits (107), Expect = 8e-06
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+N +GY+S DL+ + L + + +I+ DG R+D F FV ++
Sbjct: 40 RNKKGYLSRMDLQQIGA-LAVNPLGDR---IIESFFPDGSQRVD--------FPGFVRVL 87
Query: 203 ----------YNMGATTEEKTADQEEKELRDAFR 226
+ + + +L AF+
Sbjct: 88 AHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQ 121
Score = 41.3 bits (97), Expect = 1e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSN--SPVFLIVEFKEAFRLFDK 70
+ AF+L+D D DG S + ++ + L + D+
Sbjct: 115 KLHYAFQLYDLDRDG--------KISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADE 166
Query: 71 DGDGSITKEELGRVMRS 87
DGDG+++ E + +
Sbjct: 167 DGDGAVSFVEFTKSLEK 183
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 93.6 bits (233), Expect = 2e-23
Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 39/168 (23%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG---------------QFAREEELQQMLEEV 104
F FD+DG+G I + + +++ E Q +
Sbjct: 5 RIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA 64
Query: 105 DINGK--------KAGNYSIMNHCGAVVNALDFGSGGWWFKS--KSGHKNYRGYISASDL 154
D +G G + + G G ++ +D
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDG----DGAVTVADT 120
Query: 155 RAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
L G + E+ +D DGDG++ E V
Sbjct: 121 ARALTAFG--VPEDLARQAAAALDTDGDGKVG--------ETEIVPAF 158
Score = 59.4 bits (144), Expect = 6e-11
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
++ + D+DGD +F + A + D DG
Sbjct: 56 LWQGLAGIADRDGDQRI--TREEFVTGAVKRLRDK--PDRFAEMARPFLHAALGVADTDG 111
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG++T + R + + G E+ +Q +D +G
Sbjct: 112 DGAVTVADTARALTAFG--VPEDLARQAAAALDTDG 145
Score = 43.2 bits (102), Expect = 2e-05
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
A + D DGDG V + + ++A D D
Sbjct: 99 FLHAALGVADTDGDGAVTVADTARALTAFG--------------VPEDLARQAAAALDTD 144
Query: 72 GDGSITKEELGRVMR 86
GDG + + E+
Sbjct: 145 GDGKVGETEIVPAFA 159
Score = 30.1 bits (68), Expect = 0.57
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 9/71 (12%)
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAF 225
E I D DG+G I +F M A + L
Sbjct: 2 YERRIAARFTTFDQDGNGHI--------DRSDFSGAAKAMLAEFGVAARSDRGQALYGGA 53
Query: 226 -REVEDIADEV 235
+ +A
Sbjct: 54 EALWQGLAGIA 64
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 93.7 bits (233), Expect = 3e-23
Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 32/178 (17%)
Query: 56 FLIVEFKEAFRLFDKDGDGSITKEEL----GRVMRSLGQFAREEELQ-----------QM 100
K+ F +D DG+G++ + + + + G+ A E+Q +
Sbjct: 4 IASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYL 63
Query: 101 LEEVDINGKKAGNY----SIMNHCGAVVNALDFGSGGWWFKS---KSGHKNYRGYISASD 153
+E + + + + F KN G I+A +
Sbjct: 64 AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADE 123
Query: 154 LRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE 211
A L LG +S+ E + +VD +G+G + +E + V + +
Sbjct: 124 FAAWLTALG--MSKAEAAEAFNQVDTNGNGELS--------LDELLTAVRDFHFGRLD 171
Score = 49.0 bits (117), Expect = 2e-07
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 147 GYISASDL----RAVLQCLGEDLSEEEIEDMIKEVDVDGDG---RIDFNGDGYFSFEEFV 199
G + +D + + + G+D E++ + D DG + E+F+
Sbjct: 22 GALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFI 81
Query: 200 EIVYN-MGATTEEKTADQEEKELRDAFR 226
+ N + E ++
Sbjct: 82 RVTENLIFEQGEASFNRVLGPVVKGIVG 109
Score = 30.5 bits (69), Expect = 0.45
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRD 223
++ + ++ D DG+G + +F + ++ + E + L++
Sbjct: 3 AIASDRLKKRFDRWDFDGNGAL--------ERADFEKEAQHIAEAFGKDAGAAEVQTLKN 54
Query: 224 AFREVED 230
AF + D
Sbjct: 55 AFGGLFD 61
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 94.6 bits (235), Expect = 3e-23
Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 38/187 (20%)
Query: 57 LIVEFKEAFRLFDKDGDGSITKEELGR-VMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
E F+ FDK+ G + +E+ + L ++ + + + G+
Sbjct: 46 AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL 105
Query: 116 IMNHCGAVVNALDFGSGGWWFKSKSGHKNYR------------------GYISASDLRAV 157
+ DF F Y + + +
Sbjct: 106 ENK------GSEDFVE----FLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRA 155
Query: 158 LQCLG-EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQ 216
+ L E+ + KE+D +G G + F+EF + + +
Sbjct: 156 VPKLEAWGAKVEDPAALFKELDKNGTGSVT--------FDEFAAWASAVKLDADGDPDNV 207
Query: 217 EEKELRD 223
E L
Sbjct: 208 PESALEH 214
Score = 50.3 bits (120), Expect = 2e-07
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 143 KNYRGYISASDLR-AVLQCLGEDLSEEEIEDMIKEV-DVDGDGRIDFNGDGYFSFEEFVE 200
KN G + ++ L+ L D + D+ K D G F EF+E
Sbjct: 59 KNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLE 118
Query: 201 IVYNMGATTEEKTADQEEKELRDAFRE 227
EL F E
Sbjct: 119 ------FRLMLCYIYDFF-ELTVMFDE 138
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 93.2 bits (231), Expect = 3e-22
Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 41/203 (20%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE----------EELQQMLEEVDIN 107
F + ++ FD D +G I +EL R + + + + + + D
Sbjct: 10 AAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDAT 69
Query: 108 GK---------KAGNYSIMNHCGAVVNALDFGSGGWWFKS-KSGHKNYRGYISASDLRAV 157
N + + K + + GYISA++L+
Sbjct: 70 FDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNF 129
Query: 158 LQCLG--------EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV-----YN 204
L+ L + +E + M+K D + DGR+ + I+ +
Sbjct: 130 LKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRL--------DLNDLARILALQENFL 181
Query: 205 MGATTEEKTADQEEKELRDAFRE 227
+ + + + +++ F
Sbjct: 182 LQFKMDASSQVERKRDFEKIFAH 204
Score = 83.2 bits (205), Expect = 1e-18
Identities = 30/217 (13%), Positives = 67/217 (30%), Gaps = 37/217 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
K +D DG +Q + +P+ VEF + +R +D D
Sbjct: 58 IKKSFMSAYDATFDGRLQIEELANMIL-PQEENFLLIFRREAPLDNSVEFMKIWRKYDAD 116
Query: 72 GDGSITKEELGRVMRSLGQFAR--------EEELQQMLEEVDINGKKAGNYSIMNHCGAV 123
G I+ EL ++ L + +E M++ D N + + + A+
Sbjct: 117 SSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL 176
Query: 124 VNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCLGE----DLSEE 168
+++ G + ++ ++ + E +S
Sbjct: 177 QENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGG 236
Query: 169 EIED----MIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+++ ++ D++ DG+I E
Sbjct: 237 DLDKFRECLLTHCDMNKDGKIQ--------KSELALC 265
Score = 52.4 bits (125), Expect = 5e-08
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 147 GYISASDLRAVLQCLGEDL--SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
GYI +L + + + L ++ ++ ++++ D DG EE ++
Sbjct: 26 GYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILP 85
Query: 205 MGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGELREFI 249
+ + F ++ D S + EL+ F+
Sbjct: 86 QEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFL 130
Score = 42.7 bits (100), Expect = 7e-05
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 13/78 (16%)
Query: 13 EFKEAFRLFDKDGDGVQARH-----FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
+F++ F +D G + + L +
Sbjct: 197 DFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDK--------FRECLLTH 248
Query: 68 FDKDGDGSITKEELGRVM 85
D + DG I K EL +
Sbjct: 249 CDMNKDGKIQKSELALCL 266
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 87.3 bits (217), Expect = 7e-22
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I EFK AF +FD DG G I+ +ELG VMR LGQ +EEL ++EEVD +G
Sbjct: 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Score = 69.2 bits (170), Expect = 3e-15
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 8/55 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
G IS +L V++ LG++ ++EE++ +I+EVD DG G ID FEEF+ +
Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID--------FEEFLVM 81
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 85.0 bits (211), Expect = 4e-21
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISAS+LR V+ LGE L++EE+E MIKE D+DGDG+++ +EEFV++
Sbjct: 20 KDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN--------YEEFVKM- 70
Query: 203 YNMGATTEEKTADQEEKELRDAFR 226
M + LR F
Sbjct: 71 --MMTVRGGGGGNGWS-RLRRKFS 91
Score = 74.2 bits (183), Expect = 5e-17
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E KEAF++FDKD +G I+ EL VM +LG+ +EE++QM++E D++G
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDG 58
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 85.0 bits (211), Expect = 4e-21
Identities = 22/51 (43%), Positives = 36/51 (70%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E+KEAF+LFDKD D +T EELG VMR+LG ++++ +++++ D +
Sbjct: 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN 63
Score = 64.2 bits (157), Expect = 2e-13
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ ++A +L V++ LG + ++++I +++K+ D D G+ D E F+ I+
Sbjct: 25 KDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFD--------QETFLTIM 76
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 87.1 bits (216), Expect = 8e-21
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 25/174 (14%)
Query: 56 FLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFA--REEELQQMLEEVD-----ING 108
+ + K F D D DG+IT+ + + + + + E + +++ +
Sbjct: 3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLT 62
Query: 109 KKAGNYSI--------MNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQC 160
AG I M A G ++ N IS +
Sbjct: 63 AVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM 122
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTA 214
LG L + +D + DG + EEFV + + T
Sbjct: 123 LG--LDKTMAPASFDAIDTNNDGLLS--------LEEFVIAGSDFFMNDGDSTN 166
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 15/73 (20%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
FR D + D + + FF +F D + D
Sbjct: 97 PLFFRAVDTNEDNNISRDEYGIFFGMLG--------------LDKTMAPASFDAIDTNND 142
Query: 74 GSITKEELGRVMR 86
G ++ EE
Sbjct: 143 GLLSLEEFVIAGS 155
Score = 30.1 bits (68), Expect = 0.54
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRD 223
DL ++++ +D D DG I +F + +E K + K L D
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAIT--------RMDFESMAERFAKESEMK--AEHAKVLMD 51
Query: 224 AFREVED 230
+ V D
Sbjct: 52 SLTGVWD 58
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 83.7 bits (208), Expect = 8e-21
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E KEAF LFD + GSI EL MR+LG ++ E+ +++ E D G
Sbjct: 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREG 56
Score = 64.4 bits (158), Expect = 1e-13
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G I +L+ ++ LG D+ + EI +++ E D +G+G I F++F++I+
Sbjct: 22 GSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIG--------FDDFLDIM 69
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 87.5 bits (217), Expect = 1e-20
Identities = 24/199 (12%), Positives = 53/199 (26%), Gaps = 43/199 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS-- 115
+ F D+D G++ EL G + +M+ D + ++
Sbjct: 50 YTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEF 109
Query: 116 -----IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEI 170
M + + G + ++ LQ LG ++ +
Sbjct: 110 MAMYKFMELAYNLFVMNA--------------RARSGTLEPHEILPALQQLGFYIN-QRT 154
Query: 171 EDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVED 230
++ + G D N ++ I + R A++ +
Sbjct: 155 SLLLHRLFARGMAFCDLN--------CWIAICAFA-------------AQTRSAYQMIFM 193
Query: 231 IADEVSDCVRNTGELREFI 249
N E +F+
Sbjct: 194 NPYYGPMKPFNPMEFGKFL 212
Score = 52.1 bits (125), Expect = 4e-08
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 9 FSIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
S R+FD D +G F +F + + F +
Sbjct: 84 LSPQTALRMMRIFDTDFNG--HISFYEFMAMYKF---------------MELAYNLFVMN 126
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+ G++ E+ ++ LG F + +L + G
Sbjct: 127 ARARSGTLEPHEILPALQQLG-FYINQRTSLLLHRLFARGM 166
Score = 29.4 bits (66), Expect = 1.4
Identities = 3/67 (4%), Positives = 10/67 (14%), Gaps = 14/67 (20%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
F + + G ++ + + + G
Sbjct: 120 YNLFVMNARARSGTLEPHEILPAL--------QQLGFYINQ-----RTSLLLHRLFARGM 166
Query: 74 GSITKEE 80
Sbjct: 167 AFCDLNC 173
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 83.0 bits (206), Expect = 2e-20
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I KE F++ D D G+IT +EL ++ +G E E++ +++ DI+
Sbjct: 22 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK 72
Score = 66.4 bits (163), Expect = 3e-14
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ G I+ +L+ L+ +G +L E EI+D++ D+D G ID + EF+
Sbjct: 34 TDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTID--------YGEFIAA 84
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 82.0 bits (203), Expect = 1e-19
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ FKE + FD +G+G I L R++ LG EL++++ EV
Sbjct: 31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS 81
Score = 65.9 bits (161), Expect = 7e-14
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
G I L+ +L+ LG + E++ +I EV + +F+ +
Sbjct: 47 GDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFS--------YPDFLRM 93
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 87.8 bits (218), Expect = 2e-19
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 27/160 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR--------------EEELQQMLEE 103
+ E FR D + DG + ++EL R + E+++ ++
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL 389
Query: 104 VDINGKKAGNYS--IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL 161
+D++G + YS I A+ + K K+ G IS +L +
Sbjct: 390 LDMDGSGSIEYSEFI---ASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA 446
Query: 162 GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ EE+E +I++VD + DG +D F EFVE+
Sbjct: 447 DSSIQMEELESIIEQVDNNKDGEVD--------FNEFVEM 478
Score = 38.1 bits (89), Expect = 0.003
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 155 RAVLQCLGEDLSE-EEIED---MIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTE 210
+A L + L+ +E + + +++D + DG + +E V +
Sbjct: 314 QAALLYMASKLTTLDETKQLTEIFRKLDTNNDGML--------DRDELVRGYHEFMRLKG 365
Query: 211 EKTADQEEKELRDAFREVEDIADEVSDCVRNTGEL--REFI 249
+ + E +++ + + + +G + EFI
Sbjct: 366 VDSNSLIQNEGSTIEDQIDSLMPLLD--MDGSGSIEYSEFI 404
Score = 36.2 bits (84), Expect = 0.013
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 15 KEAFRLFDKDGDGV-QARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ AF++FDKDG G + + FS +S L + D + D
Sbjct: 420 ERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEEL------------ESIIEQVDNNKD 467
Query: 74 GSITKEELGRVMRSL 88
G + E ++++
Sbjct: 468 GEVDFNEFVEMLQNF 482
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 79.8 bits (198), Expect = 2e-19
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
K F FDK+ DG ++ +E V + + +E++ + EE+D++G
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDG 50
Score = 70.6 bits (174), Expect = 4e-16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
KN G +S + R V ++E+I +E+DVDG+G ++ +EF +
Sbjct: 12 KNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELN--------ADEFTSCI 63
Query: 203 YNM 205
M
Sbjct: 64 EKM 66
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 85.5 bits (212), Expect = 9e-19
Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 47/214 (21%)
Query: 11 IVEFKEAFRLFDKDGDGVQARHFRQFFSFNN--SFYTTTMLYSNSPVFLIVEFKEAFRLF 68
I ++ D+ + R+F + + + E + F+
Sbjct: 305 IKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKL 364
Query: 69 DKDGDGSITKEELGRVMRSLGQFAR--------EEELQQMLEEVDINGKKAGNYS--IM- 117
DK+GDG + K+EL L F EEE+ +L+EVD + YS I
Sbjct: 365 DKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISV 424
Query: 118 ----------NHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSE 167
N D + G I+ +L + +SE
Sbjct: 425 CMDKQILFSEERLRRAFNLFD--------------TDKSGKITKEELANLFG--LTSISE 468
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ D++ E D + D ID F+EFV +
Sbjct: 469 KTWNDVLGEADQNKDNMID--------FDEFVSM 494
Score = 47.0 bits (112), Expect = 5e-06
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 35/132 (26%)
Query: 143 KNYRGYISASDLRAVLQCLGE--------DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
KN G + +L L EEE+++++KEVD D +G I+
Sbjct: 366 KNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIE-------- 417
Query: 195 FEEFVEIVYNMGATTEEKTADQEEKELRDAFR----------EVEDIADEVSDCVRNTGE 244
+ EF+ +++ EE+ LR AF E++A+ +
Sbjct: 418 YSEFIS------VCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELANLFGLTSISEKT 470
Query: 245 LREFIVLREIDS 256
+ VL E D
Sbjct: 471 WND--VLGEADQ 480
Score = 37.0 bits (86), Expect = 0.008
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 155 RAVLQCLGEDLSE-EEIEDMI---KEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTE 210
+A + +G L+ EE +++ K++D +GDG++ +E +E
Sbjct: 338 QAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQL--------DKKELIE------GYNV 383
Query: 211 EKTADQEEKELRDAFREVEDIADEVSDCVRNTGEL--REFI 249
+ E EL++ EV++I EV G + EFI
Sbjct: 384 LRNFKNELGELKNVEEEVDNILKEVD--FDKNGYIEYSEFI 422
Score = 32.4 bits (74), Expect = 0.22
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 15/75 (20%)
Query: 15 KEAFRLFDKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ AF LFD D G + F + + + D++ D
Sbjct: 438 RRAFNLFDTDKSGKITKEELANLFGLTSISE--------------KTWNDVLGEADQNKD 483
Query: 74 GSITKEELGRVMRSL 88
I +E +M +
Sbjct: 484 NMIDFDEFVSMMHKI 498
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 81.4 bits (201), Expect = 2e-18
Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 32/165 (19%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY--- 114
I F DK +G++++E+ R+ + A +++ G+ N+
Sbjct: 28 ITRLYSRFTSLDKGENGTLSREDFQRIP----ELAINPLGDRIINAFFSEGEDQVNFRGF 83
Query: 115 -SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR-----------GYISASDLRAVLQCL- 161
+ H + + S IS +L VL+ +
Sbjct: 84 MRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV 143
Query: 162 GEDLSEEEIED----MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G ++S+E++ I+E D DGD I SF EFV+++
Sbjct: 144 GVNISDEQLGSIADRTIQEADQDGDSAI--------SFTEFVKVL 180
Score = 39.4 bits (92), Expect = 6e-04
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSN--SPVFLIVEFKEAFRLFDK 70
+ AFRL+D D D S + M+ S L + D+
Sbjct: 114 KLHFAFRLYDLDKDD--------KISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQ 165
Query: 71 DGDGSITKEELGRVMRS 87
DGD +I+ E +V+
Sbjct: 166 DGDSAISFTEFVKVLEK 182
Score = 36.7 bits (85), Expect = 0.005
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 21/93 (22%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI- 201
K G +S D + + + L + + I I +G+ +++ F F+
Sbjct: 40 KGENGTLSREDFQRIPE-LAINPLGDRI---INAFFSEGEDQVN--------FRGFMRTL 87
Query: 202 --------VYNMGATTEEKTADQEEKELRDAFR 226
+ + +L AFR
Sbjct: 88 AHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 84.8 bits (210), Expect = 2e-18
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 25/155 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR--------EEELQQMLEEVDINGK 109
E + FR DK+GDG + ++EL L E E+ +L D +
Sbjct: 345 TKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRN 404
Query: 110 KAGNYS--IMNHCGAVVNALDFGS-GGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLS 166
+YS + ++ S + ++ G IS +L +V + L
Sbjct: 405 GYIDYSEFVT----VAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFG--LDHLE 458
Query: 167 EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ ++MI +D + DG +D FEEF ++
Sbjct: 459 SKTWKEMISGIDSNNDGDVD--------FEEFCKM 485
Score = 47.0 bits (112), Expect = 4e-06
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 35/132 (26%)
Query: 143 KNYRGYISASDLRAVLQCLGED--------LSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
KN G + +L L + E E++ ++ D D +G ID
Sbjct: 357 KNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYID-------- 408
Query: 195 FEEFVEIVYNMGATTEEKTADQEEKELRDAFR----------EVEDIADEVSDCVRNTGE 244
+ EFV + K+ ++K L AF+ V+++A +
Sbjct: 409 YSEFVT------VAMDRKSLLSKDK-LESAFQKFDQDGNGKISVDELASVFGLDHLESKT 461
Query: 245 LREFIVLREIDS 256
+E ++ IDS
Sbjct: 462 WKE--MISGIDS 471
Score = 38.1 bits (89), Expect = 0.003
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 155 RAVLQCLGEDL-SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKT 213
+A L + L S+EE +++ ID NGDG +E ++ ++
Sbjct: 329 QAALLYMASKLTSQEETKELTDIFR-----HIDKNGDGQLDRQELID------GYSKLSG 377
Query: 214 ADQEEKELRDAFREVEDIADEVSDCVRNTGEL--REFI 249
+ +L EV+ I G + EF+
Sbjct: 378 EEVAVFDLPQIESEVDAILGAA--DFDRNGYIDYSEFV 413
Score = 33.5 bits (77), Expect = 0.081
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 15 KEAFRLFDKDGDGV-QARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ AF+ FD+DG+G F ++ +KE D + D
Sbjct: 429 ESAFQKFDQDGNGKISVDELASVFGLDHLES--------------KTWKEMISGIDSNND 474
Query: 74 GSITKEELGRVMRSL 88
G + EE ++++ L
Sbjct: 475 GDVDFEEFCKMIQKL 489
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 77.7 bits (192), Expect = 2e-18
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I + + F+ FD +GDG I+ ELG +++LG +E+++M+ E+D +G
Sbjct: 10 IADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDG 59
Score = 64.6 bits (158), Expect = 1e-13
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N G IS+S+L L+ LG ++ +E+ M+ E+D DGDG I F+EF +
Sbjct: 22 TNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFIS--------FDEFTDFA 72
Query: 203 YNMGATTEE 211
++
Sbjct: 73 RANRGLVKD 81
Score = 30.3 bits (69), Expect = 0.19
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 21/70 (30%)
Query: 163 EDLSEEEIEDMIKEV----DVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEE 218
+ + ++I D + + D +GDG+I S E + + +G+ T +
Sbjct: 3 AEDTPQDIAD-RERIFKRFDTNGDGKI--------SSSELGDALKTLGSVTPD------- 46
Query: 219 KELRDAFREV 228
E+R E+
Sbjct: 47 -EVRRMMAEI 55
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 79.5 bits (196), Expect = 6e-18
Identities = 15/183 (8%), Positives = 42/183 (22%), Gaps = 34/183 (18%)
Query: 56 FLIVEFKEAFR-LFDKDGDGSITKEELGRVMRSLGQFAR---------------EEELQQ 99
F + F +D + DG I ++ ++ + +
Sbjct: 9 FQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDG 68
Query: 100 MLEEVDINGK--------KAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
+ + D N + + ++ + F + I
Sbjct: 69 LRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDK 128
Query: 152 SDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE 211
+ V G + + + + + G + E F + + +
Sbjct: 129 HEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVT--------REIFARLWTEYFVSNDR 178
Query: 212 KTA 214
Sbjct: 179 GAK 181
Score = 58.7 bits (142), Expect = 1e-10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 14 FKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ + D++ D ++ + + P +L F + D GD
Sbjct: 66 WDGLRKYADENEDEQV--TKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGD 123
Query: 74 GSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
I K E V S G + + + + G
Sbjct: 124 NIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGG 156
Score = 30.6 bits (69), Expect = 0.48
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
LS+ + +++ + D N DG +++F + + T ++ E R
Sbjct: 4 HQLSDFQRNKILRVFNT----FYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEAR 59
Query: 223 DAFREVED 230
+ + D
Sbjct: 60 ATLKLIWD 67
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 75.2 bits (186), Expect = 1e-17
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ + AFR FD+DGDG IT +EL R M LGQ +EEL M+ E D++
Sbjct: 7 DLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQ 55
Score = 72.9 bits (180), Expect = 7e-17
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
++ G+I+ +LR + LG+ L +EE++ MI+E DVD DGR++ +EEF +
Sbjct: 17 QDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN--------YEEFARM 67
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 81.7 bits (202), Expect = 2e-17
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRS-----------LGQFAREEELQQMLEEVDI 106
E F DK+GDG + + EL + L A E E+ Q+L+ VD
Sbjct: 334 TKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDF 393
Query: 107 NGKKAGNYS--IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGED 164
+ YS + A+ + + G IS+++L + D
Sbjct: 394 DKNGYIEYSEFV---TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFG--VSD 448
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
+ E + ++ EVD + DG +D F+EF ++
Sbjct: 449 VDSETWKSVLSEVDKNNDGEVD--------FDEFQQM 477
Score = 47.8 bits (114), Expect = 2e-06
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 38/135 (28%)
Query: 143 KNYRGYISASDLRAVLQ-----------CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDG 191
KN G + ++L + L E E++ ++ VD D +G I+
Sbjct: 346 KNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIE----- 400
Query: 192 YFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFR----------EVEDIADEVSDCVRN 241
+ EFV + KT E+ L AFR ++A +
Sbjct: 401 ---YSEFVT------VAMDRKTLLSRER-LERAFRMFDSDNSGKISSTELATIFGVSDVD 450
Query: 242 TGELREFIVLREIDS 256
+ + VL E+D
Sbjct: 451 SETWKS--VLSEVDK 463
Score = 36.6 bits (85), Expect = 0.009
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 155 RAVLQCLGEDL-SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKT 213
+A L +G L S++E +++ ++D NGDG E +E Y + +
Sbjct: 318 QAALLYMGSKLTSQDETKELTAIFH-----KMDKNGDGQLDRAELIE-GYKELMRMKGQD 371
Query: 214 ADQEEKELRDAFREVEDIADEVSDCVRNTGEL--REFI 249
A + + EV+ + D V G + EF+
Sbjct: 372 ASMLDASAVEH--EVDQVLDAVD--FDKNGYIEYSEFV 405
Score = 33.5 bits (77), Expect = 0.085
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 15 KEAFRLFDKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ AFR+FD D G + F ++ +K DK+ D
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFGVSD--------------VDSETWKSVLSEVDKNND 466
Query: 74 GSITKEELGRVMRSLGQ 90
G + +E +++ L
Sbjct: 467 GEVDFDEFQQMLLKLCG 483
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 74.5 bits (184), Expect = 3e-17
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ + F+ FD +GDG I+ EL +R+LG +E+Q+M+ E+D +G
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDG 51
Score = 66.1 bits (162), Expect = 3e-14
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N G IS S+L L+ LG S +E++ M+ E+D DGDG ID F EF+
Sbjct: 14 TNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFID--------FNEFISF- 63
Query: 203 YNMGATTEEKTADQEEKELRDAF 225
A K++ F
Sbjct: 64 --CNANPGLM------KDVAKVF 78
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 76.2 bits (188), Expect = 3e-17
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 51/170 (30%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVM-RSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
K E++ VM + EL + + +
Sbjct: 4 TEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPER--------- 54
Query: 119 HCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG-EDLSEEEIEDMIKEV 177
I+A LR LG E +S+E+ + M++E
Sbjct: 55 ----------------------------HLITAESLRRNSGILGIEGMSKEDAQGMVREG 86
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFRE 227
D+DGDG ++ EF + M + E + E L A +
Sbjct: 87 DLDGDGALN--------QTEFCVL---MVRLSPE-MMEDAETWLEKALTQ 124
Score = 46.9 bits (112), Expect = 7e-07
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 167 EEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFR 226
E + M+ E +E+ + ++ E+ ++ EL F
Sbjct: 2 EPTEKSMLLETTSTTKMETK--------YEDMLPVM------AEKMDVEEFVSELCKGFS 47
Score = 41.9 bits (99), Expect = 4e-05
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 10 SIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFD 69
+ E + F L + + + +L + + R D
Sbjct: 38 FVSELCKGFSLLADPERH--------LITAESLRRNSGILGIEG--MSKEDAQGMVREGD 87
Query: 70 KDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
DGDG++ + E +M L E+ + LE+ N S M
Sbjct: 88 LDGDGALNQTEFCVLMVRLSP-EMMEDAETWLEKALTQELCNHNLSSM 134
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 74.2 bits (183), Expect = 4e-17
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
E +EAFR+ DKDG+G I+ EL VM +LG+ +EE+ +M+ E DI+G
Sbjct: 30 EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 78
Score = 73.1 bits (180), Expect = 1e-16
Identities = 27/60 (45%), Positives = 45/60 (75%), Gaps = 8/60 (13%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
K+ GYISA++LR V+ LGE L++EE+++MI+E D+DGDG+++ +EEFV+++
Sbjct: 40 KDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN--------YEEFVQMM 91
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 76.0 bits (187), Expect = 4e-17
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ FKE + FD + +G I L R+M LG E+++M+ EV
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGV 99
Score = 66.4 bits (162), Expect = 1e-13
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
G I L+ +++ LG + E++ MI EV I + +FV +
Sbjct: 65 GEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTIS--------YRDFVNM 111
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 73.7 bits (182), Expect = 5e-17
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR-EEELQQMLEEVDING 108
E AF++FD +GDG I +E +M+ +G+ + E+++ ++E D +G
Sbjct: 9 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDG 58
Score = 70.3 bits (173), Expect = 8e-16
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 143 KNYRGYISASDLRAVLQCLGED-LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEI 201
N G I + + ++Q +GE+ L++ E+E+ +KE D DG+G ID EF+++
Sbjct: 19 ANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID--------IPEFMDL 70
Query: 202 VYNMGATTEE 211
+ +E
Sbjct: 71 IKKSKNALKE 80
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 73.4 bits (181), Expect = 1e-16
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 48/135 (35%)
Query: 87 SLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR 146
+ + ++ L+ + ++ + F +K G
Sbjct: 2 AFSGILADADVAAALKACEAADS-----------------FNYKA----FFAKVGLTAKS 40
Query: 147 ----------------GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDF 187
G+I +L+ LQ L++ E + +K D DGDG I
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIG- 99
Query: 188 NGDGYFSFEEFVEIV 202
+E+ +V
Sbjct: 100 -------VDEWAALV 107
Score = 61.9 bits (151), Expect = 2e-12
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+ A + + F++ +F+ L + S + K+AF + D+D
Sbjct: 11 DVAAALKACEAAD----------SFNYK-AFFAKVGLTAKSAD----DIKKAFFVIDQDK 55
Query: 73 DGSITKEELGRVMRSLGQFAR---EEELQQMLEEVDING 108
G I ++EL ++ AR + E + L+ D +G
Sbjct: 56 SGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDG 94
Score = 44.5 bits (106), Expect = 3e-06
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 28/109 (25%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-----KTAD 215
L++ ++ +K + F+++ F V + ++ D
Sbjct: 3 FSGILADADVAAALKACE----------AADSFNYKAFFAKVGLTAKSADDIKKAFFVID 52
Query: 216 Q------EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
Q EE EL+ + A ++D E + F+ + DS G
Sbjct: 53 QDKSGFIEEDELKLFLQVFSAGARALTD-----AETKAFL--KAGDSDG 94
Score = 38.4 bits (90), Expect = 4e-04
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+ K+AF + D+D G F + + + + E K + D DG
Sbjct: 43 DIKKAFFVIDQDKSG--------FIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDG 94
Query: 73 DGSITKEELGRVMRS 87
DG+I +E ++++
Sbjct: 95 DGAIGVDEWAALVKA 109
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 72.6 bits (178), Expect = 6e-16
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ FK + FD +G+G I L R++ LG EL++++ EV
Sbjct: 47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGS 97
Score = 66.5 bits (162), Expect = 1e-13
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G I L+ +L+ LG + E++ +I+EV + ++
Sbjct: 63 GDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYS 104
Score = 29.5 bits (66), Expect = 0.89
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 31/70 (44%)
Query: 163 EDLSEEEIEDMIK---EVDVDGDGRI----------------------------DFNGDG 191
++ ++E E D++G+G I +
Sbjct: 40 DEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEE 99
Query: 192 YFSFEEFVEI 201
FS+ +F+ +
Sbjct: 100 TFSYSDFLRM 109
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 69.6 bits (171), Expect = 2e-15
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLG------QFAREEELQQMLEEVDING 108
E + AF+ D +GDG +T EL M +L + +E ++++ D N
Sbjct: 8 ELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNS 62
Score = 65.3 bits (160), Expect = 6e-14
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 147 GYISASDLRAVLQCLG------EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
GY++A +L+ + L +D +E +IK D + DG+I EEF+
Sbjct: 22 GYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKIS--------KEEFLN 73
Query: 201 I 201
Sbjct: 74 A 74
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 69.9 bits (172), Expect = 2e-15
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 48/134 (35%)
Query: 88 LGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR- 146
+ + + +++ + + G D+ F G K
Sbjct: 2 MTKVLKADDINKAISAFKDPGT-----------------FDYKR----FFHLVGLKGKTD 40
Query: 147 ---------------GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFN 188
G+I +L+ VL+ G DL++ E + ++ D D DG+I
Sbjct: 41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIG-- 98
Query: 189 GDGYFSFEEFVEIV 202
+EF ++V
Sbjct: 99 ------ADEFAKMV 106
Score = 64.5 bits (158), Expect = 2e-13
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQMLEEVDING 108
+ KE F + DKD G I +EEL V++ R + E + +L D +
Sbjct: 42 QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDH 93
Score = 41.0 bits (97), Expect = 5e-05
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 28/105 (26%)
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-KTA----DQ--- 216
L ++I I G F ++ F +V G T + K D+
Sbjct: 6 LKADDINKAISAFK----------DPGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQS 55
Query: 217 ---EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
EE+EL+ + +++D E + + DS
Sbjct: 56 GFIEEEELKGVLKGFSAHGRDLND-----TETKALL--AAGDSDH 93
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+ KE F + DKD G F ++ E K D D
Sbjct: 42 QVKEVFEILDKDQSG--------FIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDH 93
Query: 73 DGSITKEELGRVMRS 87
DG I +E +++
Sbjct: 94 DGKIGADEFAKMVAQ 108
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 69.5 bits (171), Expect = 3e-15
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 48/135 (35%)
Query: 87 SLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR 146
+ + +++++ L+ V G + F + G K
Sbjct: 2 AAKDLLKADDIKKALDAVKAEGS-----------------FNHKK----FFALVGLKAMS 40
Query: 147 ----------------GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDF 187
G+I +L+ VL+ G DL++ E + +K D DGDG+I
Sbjct: 41 ANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIG- 99
Query: 188 NGDGYFSFEEFVEIV 202
+EF +V
Sbjct: 100 -------IDEFETLV 107
Score = 66.1 bits (162), Expect = 7e-14
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQMLEEVDING 108
+ K+ F+ D D G I +EEL V++S R + E + L+ D +G
Sbjct: 43 DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDG 94
Score = 42.9 bits (102), Expect = 1e-05
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 28/105 (26%)
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-KTA----DQ--- 216
L ++I+ + V +G F+ ++F +V + + K D
Sbjct: 7 LKADDIKKALDAVK----------AEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADAS 56
Query: 217 ---EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
EE+EL+ + +++D E + F+ + D G
Sbjct: 57 GFIEEEELKFVLKSFAADGRDLTD-----AETKAFL--KAADKDG 94
Score = 41.0 bits (97), Expect = 4e-05
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+ K+ F+ D D G F + ++ E K + DKDG
Sbjct: 43 DVKKVFKAIDADASG--------FIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDG 94
Query: 73 DGSITKEELGRVMRS 87
DG I +E ++
Sbjct: 95 DGKIGIDEFETLVHE 109
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 69.1 bits (170), Expect = 5e-15
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 48/128 (37%)
Query: 94 EEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYR------- 146
+ ++ L F +K G +
Sbjct: 8 DADVAAALAACSAADS-----------------FKHKE----FFAKVGLASKSLDDVKKA 46
Query: 147 ---------GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
G+I +L+ LQ L++ E + + + D DGDG I
Sbjct: 47 FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIG-------- 98
Query: 195 FEEFVEIV 202
+EF ++
Sbjct: 99 VDEFAAMI 106
Score = 65.7 bits (161), Expect = 8e-14
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 43 FYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQ 99
F+ L S S + K+AF + D+D G I ++EL +++ AR + E +
Sbjct: 29 FFAKVGLASKSLD----DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKA 84
Query: 100 MLEEVDING 108
L + D +G
Sbjct: 85 FLADGDKDG 93
Score = 39.1 bits (92), Expect = 2e-04
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 28/105 (26%)
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-KTA----DQ--- 216
L + ++ + F +EF V + ++ K A DQ
Sbjct: 6 LKDADVAAALAACSAADS----------FKHKEFFAKVGLASKSLDDVKKAFYVIDQDKS 55
Query: 217 ---EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
EE EL+ + A ++D E + F+ + D G
Sbjct: 56 GFIEEDELKLFLQNFSPSARALTD-----AETKAFL--ADGDKDG 93
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 71.4 bits (175), Expect = 5e-15
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 41/172 (23%)
Query: 56 FLIVEFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
+ +E ++ F ++ G++ E R + + ++ M D NG ++
Sbjct: 19 ADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDF 78
Query: 115 -------SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL------ 161
+++ G + + L W FK +N G I +L +++ +
Sbjct: 79 LEYVAALNLVLR-GTLEHKLK-----WTFKIYDKDRN--GCIDRQELLDIVESIYKLKKA 130
Query: 162 -----------GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
EE ++ + VD +GDG++ S EFVE
Sbjct: 131 CSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQL--------SLNEFVEGA 174
Score = 48.7 bits (116), Expect = 5e-07
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 33/128 (25%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF-------- 187
F + G + + + + + + + +E M + D +GD IDF
Sbjct: 31 FLEECPS----GTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALN 86
Query: 188 --------------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFRE 227
+ +G +E ++IV ++ + + + E E +
Sbjct: 87 LVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA-EQQGKLLT 145
Query: 228 VEDIADEV 235
E++ D +
Sbjct: 146 PEEVVDRI 153
Score = 40.6 bits (95), Expect = 3e-04
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 15 KEAFRLFDKDGDGVQARH-----FRQFFSFNNSFYTTTMLYSNSPVFLIVEF-KEAFRLF 68
K F+++DKD +G R + + + E F L
Sbjct: 98 KWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLV 157
Query: 69 DKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
D++GDG ++ E R R++ + +ML
Sbjct: 158 DENGDGQLSLNEFVEGAR------RDKWVMKML 184
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 70.6 bits (173), Expect = 1e-14
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 53/182 (29%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE-----EELQQMLEEVDINGKKAGNY 114
F DG I +EL R + G E + M+ +D + +
Sbjct: 34 PLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 92
Query: 115 -------SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSE 167
+++N + D + G + +L+ L +G LS
Sbjct: 93 NEFKELWAVLNGWRQHFISFD--------------TDRSGTVDPQELQKALTTMGFRLSP 138
Query: 168 EEIEDMIKEVDVDGDGRIDF----------------------NGDGY--FSFEEFVEIVY 203
+ + + K +G+I F G F +++F++ V
Sbjct: 139 QAVNSIAKR--YSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196
Query: 204 NM 205
++
Sbjct: 197 SV 198
Score = 50.9 bits (122), Expect = 7e-08
Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 9 FSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
F++ + + D+D G + F++ ++ + +++ F
Sbjct: 70 FNLETCRLMVSMLDRDMSGTMGFNEFKELWAV------------------LNGWRQHFIS 111
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
FD D G++ +EL + + ++G + + + + NGK
Sbjct: 112 FDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK 153
Score = 41.3 bits (97), Expect = 1e-04
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSPVFLIVEF- 61
+ +++ F FD D G V + ++ F + + YS + ++
Sbjct: 101 VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYI 160
Query: 62 ---------KEAFRLFDKDGDGSIT 77
++FR D G +
Sbjct: 161 ACCVKLRALTDSFRRRDTAQQGVVN 185
Score = 27.4 bits (61), Expect = 5.2
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQF 36
++FR D GV + F
Sbjct: 168 ALTDSFRRRDTAQQGVVNFPYDDF 191
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 69.2 bits (169), Expect = 2e-14
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 34/172 (19%)
Query: 56 FLIVEFKEAFR-LFDKDGDGSITKEELGRVMRSLGQFAR---------------EEELQQ 99
F + K F D + DGSI + +M + + E+E +
Sbjct: 5 FQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRD 64
Query: 100 MLEEVDINGK--------KAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
+ DIN A + C +V + + F K + G +
Sbjct: 65 LKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDL 124
Query: 152 SDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
+ + + L ++ + + G D + E+ Y
Sbjct: 125 EEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFD--------LNRYKELYY 166
Score = 56.1 bits (135), Expect = 1e-09
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 13 EFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
E+++ D + D V + ++ + T ++ P + F+ D G
Sbjct: 61 EWRDLKGRADINKDDVV--SWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSG 118
Query: 73 DGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
DG + EE ++ + ++ + + G
Sbjct: 119 DGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGG 152
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 20/148 (13%)
Query: 147 GYISASDLRAVLQCLGE-------DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
G I +D ++ E D + ++ +++ D GR D N D S+EE++
Sbjct: 24 GSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL 83
Query: 200 EIVYNM--GATTEEKTADQEEKELRDAFREVEDI-------ADEVSDCVRNTGELREFI- 249
+ + + + F+ D+ +E + +N +
Sbjct: 84 AMWEKTIATCKSVADLPAWCQNRIPFLFK-GMDVSGDGIVDLEEFQNYCKNFQLQCADVP 142
Query: 250 -VLREIDSGGRLVVVRFDRFVFRFGRFV 276
V I GG++ +R+ + R +
Sbjct: 143 AVYNVITDGGKV-TFDLNRYKELYYRLL 169
Score = 38.0 bits (88), Expect = 0.002
Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 15/85 (17%)
Query: 3 YSNSPVFSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEF 61
++ P + F+ D GDG V F+ + +
Sbjct: 96 VADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--------------LQCADV 141
Query: 62 KEAFRLFDKDGDGSITKEELGRVMR 86
+ + G + +
Sbjct: 142 PAVYNVITDGGKVTFDLNRYKELYY 166
Score = 29.5 bits (66), Expect = 0.94
Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 185 IDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTG- 243
+D N DG +F +++ + +D + K ++ + + +D ++
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 244 ELREFIVLREIDSGGRLVVVRFDRFVFRFGRFV 276
E++ + E V + F+
Sbjct: 78 SWEEYLAMWEKTIATCKSVADLPAWCQNRIPFL 110
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 66.9 bits (164), Expect = 3e-14
Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 48/135 (35%)
Query: 87 SLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGH---- 142
SL ++ L + F SG
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDS-----------------FSPKK----FFQISGMSKKS 39
Query: 143 ------------KNYRGYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDF 187
+ G+I +L+ LQ L+ E + + D DGDG+I
Sbjct: 40 SSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIG- 98
Query: 188 NGDGYFSFEEFVEIV 202
EEF E+V
Sbjct: 99 -------AEEFQEMV 106
Score = 65.4 bits (160), Expect = 9e-14
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQMLEEVDING 108
+ KE FR+ D D G I ++EL ++ AR E + L D +G
Sbjct: 42 QLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDG 93
Score = 35.3 bits (82), Expect = 0.004
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 28/109 (25%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-----KTAD 215
L + LS +I +++ FS ++F +I ++ + + D
Sbjct: 2 LTDILSPSDIAAALRDCQ----------APDSFSPKKFFQISGMSKKSSSQLKEIFRILD 51
Query: 216 Q------EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
EE EL+ + E A ++ E + F+ D G
Sbjct: 52 NDQSGFIEEDELKYFLQRFESGARVLTA-----SETKTFL--AAADHDG 93
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 66.5 bits (163), Expect = 5e-14
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 38 SFN-NSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR--- 93
+F F+ T+ L S + K+ FR D D G + +EL ++ AR
Sbjct: 23 TFEPQKFFQTSGLSKMS----ASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELT 78
Query: 94 EEELQQMLEEVDING 108
E E + +++ D +G
Sbjct: 79 ESETKSLMDAADNDG 93
Score = 66.2 bits (162), Expect = 6e-14
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 143 KNYRGYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
+ GY+ +L+ LQ +L+E E + ++ D DGDG+I +EF
Sbjct: 52 NDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIG--------ADEFQ 103
Query: 200 EIV 202
E+V
Sbjct: 104 EMV 106
Score = 29.2 bits (66), Expect = 0.56
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 19/100 (19%)
Query: 170 IEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-----KTADQ------EE 218
I D++ D+ + F ++F + + + + D +
Sbjct: 2 ITDILSAEDIAA-ALQECQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDG 60
Query: 219 KELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
EL+ ++ + A E+++ E + + D+ G
Sbjct: 61 DELKYFLQKFQSDARELTE-----SETKSLM--DAADNDG 93
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 64.9 bits (159), Expect = 8e-14
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 146 RGYISASDLRAVLQCLGEDL--SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
IS +L+ V+Q LG L +++MI+EVD +GDG + FEEF+ +
Sbjct: 21 PNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS--------FEEFLVM-- 70
Query: 204 NMGATTE 210
M ++
Sbjct: 71 -MKKISQ 76
Score = 60.3 bits (147), Expect = 3e-12
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 60 EFKEAFRLFD-KDGD-GSITKEELGRVMRSLGQ--FAREEELQQMLEEVDING 108
E K AF +F K+GD I+KEEL VM++LG L +M+EEVD NG
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNG 58
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 65.8 bits (161), Expect = 8e-14
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQMLEEVDING 108
+ K+ F + DKD G I ++ELG +++ AR +E + ++ D +G
Sbjct: 42 DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDG 93
Score = 64.6 bits (158), Expect = 2e-13
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 147 GYISASDLRAVLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G+I +L ++L+ DLS +E + ++ D DGDG+I EEF +V
Sbjct: 56 GFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIG--------VEEFSTLV 106
Score = 32.6 bits (75), Expect = 0.034
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-----KTAD 215
+ + LS E+I+ I F F ++F ++V + ++ D
Sbjct: 2 MTDLLSAEDIKKAIGA----------FTAADSFDHKKFFQMVGLKKKSADDVKKVFHILD 51
Query: 216 Q------EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
+ EE EL + A ++S E + + D G
Sbjct: 52 KDKSGFIEEDELGSILKGFSSDARDLSA-----KETKTLM--AAGDKDG 93
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 65.0 bits (159), Expect = 1e-13
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 143 KNYRGYISASDLRAVLQCLG---EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
++ G+I +L+ L+ L+ E + + D DGDG+I EEF
Sbjct: 53 QDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIG--------VEEFQ 104
Query: 200 EIV 202
+V
Sbjct: 105 SLV 107
Score = 63.8 bits (156), Expect = 4e-13
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 43 FYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR---EEELQQ 99
F++T L S +P + K+ F + D+D G I +EEL +++ AR E +
Sbjct: 30 FFSTVGLSSKTPD----QIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKA 85
Query: 100 MLEEVDING 108
L D +G
Sbjct: 86 FLAAGDTDG 94
Score = 37.2 bits (87), Expect = 9e-04
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 28/109 (25%)
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEE-----KTAD 215
+ + LS ++IE + F+++ F V T ++ D
Sbjct: 3 ITDILSAKDIESALSSCQ----------AADSFNYKSFFSTVGLSSKTPDQIKKVFGILD 52
Query: 216 Q------EEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREIDSGG 258
Q EE+EL+ + A ++ E + F+ D+ G
Sbjct: 53 QDKSGFIEEEELQLFLKNFSSSARVLTS-----AETKAFL--AAGDTDG 94
Score = 37.2 bits (87), Expect = 0.001
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 13 EFKEAFRLFDKDGDG-VQA---RHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
+ K+ F + D+D G ++ + F + FS + T E K
Sbjct: 43 QIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLT------------SAETKAFLAAG 90
Query: 69 DKDGDGSITKEELGRVMRS 87
D DGDG I EE ++++
Sbjct: 91 DTDGDGKIGVEEFQSLVKA 109
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 63.7 bits (155), Expect = 5e-13
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
IS + RA+ + L++E+ + + E+ V+ GR+ + +F+
Sbjct: 35 TMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLK--------YPDFLSRF 86
Query: 203 YNMGATTEEKTADQ 216
+ A T T D
Sbjct: 87 SSETAATPMATGDS 100
Score = 60.6 bits (147), Expect = 5e-12
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ F FD +I++EE + Q +E+ ++ E+ +N
Sbjct: 25 AITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNA 73
Score = 39.8 bits (93), Expect = 1e-04
Identities = 9/76 (11%), Positives = 17/76 (22%), Gaps = 13/76 (17%)
Query: 13 EFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
+ F FD + FR + T +F + +
Sbjct: 25 AITQEFENFDTMKTNTISREEFRAICNRRVQILTDE------------QFDRLWNEMPVN 72
Query: 72 GDGSITKEELGRVMRS 87
G + + S
Sbjct: 73 AKGRLKYPDFLSRFSS 88
Score = 25.9 bits (57), Expect = 7.6
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 150 SASDLRAVLQCLGEDLSEEE--IEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGA 207
A+ R +L L + ++ I + D I S EEF I
Sbjct: 4 MATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTI--------SREEFRAICNRRVQ 55
Query: 208 TTEEKTADQ 216
++ D+
Sbjct: 56 ILTDEQFDR 64
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 62.4 bits (152), Expect = 9e-13
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ + F D + G + +EE + L R + + + + +D +
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFRALCTELRV--RPADAEAVFQRLDADR 74
Score = 56.2 bits (136), Expect = 2e-10
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVE 200
G + + RA+ L + + E + + +D D DG I F+EF
Sbjct: 42 GRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAIT--------FQEFAR 85
Score = 31.2 bits (71), Expect = 0.098
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 11/63 (17%)
Query: 152 SDLRAVLQCLGEDLSEEEIEDMIK---EVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGAT 208
S R L G D EE+ + D + GR+ EEF + +
Sbjct: 8 SSGRENLYFQGADGDGEELARLRSVFAACDANRSGRL--------EREEFRALCTELRVR 59
Query: 209 TEE 211
+
Sbjct: 60 PAD 62
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 63.2 bits (154), Expect = 2e-12
Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 47/179 (26%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE-----EELQQMLEEVDINGKKAGNY 114
F DG I +EL R + G E + M+ +D + +
Sbjct: 3 PLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 61
Query: 115 ----SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEI 170
+ F S + G + +L+ L +G L+ + +
Sbjct: 62 NEFKELWAVLNGWRQH---------FISF--DSDRSGTVDPQELQKALTTMGFRLNPQTV 110
Query: 171 EDMIKEVDVDGDGRIDF----------------------NGDGY--FSFEEFVEIVYNM 205
+ K G+I F G FS+++F++ V +
Sbjct: 111 NSIAKR--YSTSGKITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVMTV 167
Score = 49.7 bits (119), Expect = 1e-07
Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 9 FSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
F++ + + D+D G + F++ ++ + +++ F
Sbjct: 39 FNLETCRLMVSMLDRDMSGTMGFNEFKELWAV------------------LNGWRQHFIS 80
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
FD D G++ +EL + + ++G + + + + +GK
Sbjct: 81 FDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK 122
Score = 38.9 bits (91), Expect = 6e-04
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 17/84 (20%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSPVFLIVEF-- 61
+ +++ F FD D G V + ++ F N + YS S ++
Sbjct: 71 LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIA 130
Query: 62 --------KEAFRLFDKDGDGSIT 77
++FR D G +
Sbjct: 131 CCVKLRALTDSFRRRDSAQQGMVN 154
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 62.4 bits (152), Expect = 6e-12
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 41/177 (23%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFARE--------EELQQMLEEVDINGK 109
+ +F+ F D D ++ EL ++ + + + + M+ +D +
Sbjct: 3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 110 KAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEE 169
+ + N + W K + G I +S+L + G L+E
Sbjct: 62 GKLGF---EEFKYLWNNIK----KWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHL 114
Query: 170 IEDMIKEVDVDGDGRIDF----------------------NGDGY--FSFEEFVEIV 202
+I+ D G +DF +G G + +E++++
Sbjct: 115 YSMIIR-RYSDEGGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLT 170
Score = 45.1 bits (107), Expect = 6e-06
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 46/154 (29%)
Query: 135 WFKSKSGHKNYRGYISASDLRAVLQCLG--------EDLSEEEIEDMIKEVDVDGDGRID 186
F +G +SA++L +L + + + M+ +D D G++
Sbjct: 9 LFAQLAGDD---MEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG 65
Query: 187 FNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVED------IADEVSDCVR 240
FEEF K K+ + +++ + + E+
Sbjct: 66 --------FEEF-------------KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFE 104
Query: 241 NTG-----ELREFIVLREIDSGGRLVVVRFDRFV 269
G L I+ R D GG + FD F+
Sbjct: 105 AAGFHLNEHLYSMIIRRYSDEGGN---MDFDNFI 135
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 9 FSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
F I + + D D G + F+ ++ I +++ ++
Sbjct: 44 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN------------------IKKWQAIYKQ 85
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY 114
FD D G+I EL + G F E L M+ + ++
Sbjct: 86 FDVDRSGTIGSSELPGAFEAAG-FHLNEHLYSMIIRRYSDEGGNMDF 131
Score = 36.2 bits (84), Expect = 0.006
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 21/98 (21%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSP--------- 54
I +++ ++ FD D G + + F N Y+ + YS+
Sbjct: 76 IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNMDFDNFI 135
Query: 55 --VFLIVEFKEAFRLFDKDGDGSIT---KEELGRVMRS 87
+ + AF+ DKDG G I +E L M S
Sbjct: 136 SCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 61.6 bits (150), Expect = 8e-12
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 54/179 (30%)
Query: 65 FRLFDK--DGDGSITKEELGRVMRSLGQFARE-----EELQQMLEEVDINGKKAGNYS-- 115
+ F DG + EEL R + G E + M+ +D + ++
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 116 -----IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEI 170
+N +D ++ G + +LR + +G LS + +
Sbjct: 63 KELWAALNAWKENFMTVD--------------QDGSGTVEHHELRQAIGLMGYRLSPQTL 108
Query: 171 EDMIKEVDVDGDGRIDF----------------------NGDGY--FSFEEFVEIVYNM 205
++K +GRI F G F +++F++ +
Sbjct: 109 TTIVKR--YSKNGRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 165
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 9 FSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
FS+ + + D+D G + F++ ++ + +KE F
Sbjct: 37 FSLETCRIMIAMLDRDHTGKMGFNAFKELWAA------------------LNAWKENFMT 78
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
D+DG G++ EL + + +G + L +++ NG+
Sbjct: 79 VDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR 120
Score = 39.3 bits (92), Expect = 5e-04
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 17/85 (20%)
Query: 10 SIVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSPVFLIVEF- 61
++ +KE F D+DG G V+ RQ + + TT + YS + ++
Sbjct: 68 ALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYV 127
Query: 62 ---------KEAFRLFDKDGDGSIT 77
+ FR D GS
Sbjct: 128 ACCVKLRALTDFFRKRDHLQQGSAN 152
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 58.0 bits (141), Expect = 1e-11
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDING 108
+ F+ D +GDG+++ EE+ + E+ LQ + + +D +G
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADG 49
Score = 55.6 bits (135), Expect = 1e-10
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
N G +S +++A + +E+ ++ + K +D DG+G ID EF +
Sbjct: 11 VNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEID--------QNEFAKFY 62
Query: 203 YNM 205
++
Sbjct: 63 GSI 65
Score = 47.2 bits (113), Expect = 1e-07
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+ F+ D +GDG V + F S + + F+ D DG+
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQ------------LLQLIFKSIDADGN 50
Query: 74 GSITKEELGRVMRSL 88
G I + E + S+
Sbjct: 51 GEIDQNEFAKFYGSI 65
Score = 37.2 bits (87), Expect = 4e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 170 IEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREV 228
E + KE+DV+GDG + +EE V A E+ L+ F+ +
Sbjct: 2 AEALFKEIDVNGDGAVS--------YEEVKAFVSKKRAIK-------NEQLLQLIFKSI 45
Score = 25.6 bits (57), Expect = 5.6
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 13 EFKEAFRLFDKDGDG 27
+ F+ D DG+G
Sbjct: 37 LLQLIFKSIDADGNG 51
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 61.7 bits (150), Expect = 2e-11
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 35/160 (21%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFA-REEELQQMLEEVDINGKKAGNYSIM 117
E +R F + G T E ++ G + + Q+ D N ++
Sbjct: 20 ETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDF--- 76
Query: 118 NHCGAVVNALDFGSGG-------WWFKS--KSGHKNYRGYISASDLRAVLQCL------G 162
+ A++ W+FK G+ G I ++L + +
Sbjct: 77 ---LEFIAAVNLIMQEKMEQKLKWYFKLYDADGN----GSIDKNELLDMFMAVQALNGQQ 129
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
EE I + ++D++ DG + + EEF+ +
Sbjct: 130 TLSPEEFINLVFHKIDINNDGEL--------TLEEFINGM 161
Score = 54.0 bits (130), Expect = 7e-09
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
+ FD + DG F +F + + + K F+L+D DG+GSI
Sbjct: 63 YNTFDTNKDGFV--DFLEF---------IAAVNLIMQEKMEQKLKWYFKLYDADGNGSID 111
Query: 78 KEELGRVMRSLGQ------FAREEELQQMLEEVDING 108
K EL + ++ + EE + + ++DIN
Sbjct: 112 KNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINN 148
Score = 42.1 bits (99), Expect = 8e-05
Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 30/111 (27%)
Query: 147 GYISASDLRAVLQCLGED-LSEEEIEDMIKEVDVDGDGRIDF------------------ 187
G + + + +L G + + + I+ + D + DG +DF
Sbjct: 35 GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQK 94
Query: 188 ----------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREV 228
+G+G E +++ + A ++T E+ + F ++
Sbjct: 95 LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQT-LSPEEFINLVFHKI 144
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 15 KEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDG 74
K F+L+D DG+G ++ + + + SP I F D + DG
Sbjct: 96 KWYFKLYDADGNGSIDKN--ELLDMFMAVQALNGQQTLSPEEFI---NLVFHKIDINNDG 150
Query: 75 SITKEELGRVMRSLGQFAREEELQQML 101
+T EE M ++++L +++
Sbjct: 151 ELTLEEFINGMA------KDQDLLEIV 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 2e-10
Identities = 44/261 (16%), Positives = 81/261 (31%), Gaps = 101/261 (38%)
Query: 1 M---LYSNSPVFSIVEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFL 57
M LY S A ++++ D HF+ + F + + N+PV L
Sbjct: 1631 MGMDLYKTSKA--------AQDVWNR-AD----NHFKDTYGF-----SILDIVINNPVNL 1672
Query: 58 IVEF--------KEAFR--LFDKDGDGSITKE----ELGRVMRSLGQFAREEEL------ 97
+ F +E + +F+ DG + E E+ S + + L
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 98 Q-----------QMLEE---VDINGKKAGN----YSIMNHCGAVV---NALDFGSG---- 132
Q + L+ + + AG+ Y+ A+ + + S
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA------ALASLADVMSIESLVEVV 1786
Query: 133 ---GWWF-----KSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGR 184
G + + G NY + A + V S+E ++ +++ V
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYG--MIAINPGRV----AASFSQEALQYVVERVGKRTG-- 1838
Query: 185 IDFNGDGYFSFEEFVEIV-YN 204
VEIV YN
Sbjct: 1839 ------------WLVEIVNYN 1847
Score = 46.2 bits (109), Expect = 1e-05
Identities = 35/171 (20%), Positives = 54/171 (31%), Gaps = 42/171 (24%)
Query: 7 PVFSIVEFKEAFRLFDKDGDGVQAR-HFRQ-FFSFNNSFYTTTMLYSNSPVFLIVEFKEA 64
P S+ R Q+R F + F+N F + +S L A
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSH-LL----VPA 435
Query: 65 FRLFDKD---GDGSITKEEL---------GRVMRSLGQFAREEELQQMLEEVDINGKKAG 112
L +KD + S +++ G +R L E + ++ + +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTT 494
Query: 113 NYSIMNHCGAVVNALDFGSGGWWFKSKSG-----HKNYRGY----ISASDL 154
+ H LDFG GG SG H+N G I A L
Sbjct: 495 QFKA-TH------ILDFGPGG-----ASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 31.2 bits (70), Expect = 0.51
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 29/81 (35%)
Query: 204 NMGATTEEKTADQEEKELRDAF---REVEDIADE---------VSDCVR-NTGELREFIV 250
MG +L ++V + AD + D V N L
Sbjct: 1630 GMG------------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL----T 1673
Query: 251 LREIDSGGRLVVVRFDRFVFR 271
+ G+ + + +F
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFE 1694
Score = 30.8 bits (69), Expect = 0.69
Identities = 41/248 (16%), Positives = 69/248 (27%), Gaps = 86/248 (34%)
Query: 119 HCGAVVNALDFGSGGWW--FKSKS-------------GHKNY-RGYISASDLRAVLQCLG 162
H +V A+ W F ++ Y + S L L+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-N 331
Query: 163 E----------DLSEEEIEDMIKEVD--VDGDGRID---FNGDGYF-------SFEEFVE 200
E +L++E+++D + + + + +++ NG S
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 201 IVYNMGATTEEKTADQ------EEKE-----------------LRDAFREV-EDIADE-- 234
+ A + DQ E K L A + +D+
Sbjct: 392 TLRKAKAPSG---LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 235 ---VSDC---VRNT--GE-LREF---IVLREIDSGGRLVV-----VRFD-RFVFRFGRFV 276
D V +T G LR I R +D RL V +F + FG
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 277 VFRLGKFV 284
LG
Sbjct: 509 ASGLGVLT 516
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 58.2 bits (141), Expect = 2e-10
Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 65/203 (32%)
Query: 9 FSIVEFKEAFRLF-DKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
S E + ++ F + G + F+QFF N + ++ F
Sbjct: 11 LSATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYV-----------EQMFE 59
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNA 126
FD + DG I E + + + +++L+ + D++G
Sbjct: 60 TFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGN----------------- 102
Query: 127 LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG-------EDLSEEEIEDMIKEVDV 179
G I +L +++ + +EE + ++D+
Sbjct: 103 --------------------GCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDI 142
Query: 180 DGDGRIDFNGDGYFSFEEFVEIV 202
+GDG + S EEF+E V
Sbjct: 143 NGDGEL--------SLEEFMEGV 157
Score = 47.1 bits (112), Expect = 2e-06
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 47/171 (27%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFAREEEL-QQMLEEVDINGKKAGNYSIM 117
E + ++ F + G +T E + + +QM E D N
Sbjct: 15 ECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNK--------- 65
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEV 177
G+ ++ Y++A L + + ++++ K
Sbjct: 66 ----------------------DGYIDFMEYVAA------LSLVLKGKVDQKLRWYFKLY 97
Query: 178 DVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREV 228
DVDG+G I E + I+ + A A E+ F ++
Sbjct: 98 DVDGNGCI--------DRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKI 140
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 15 KEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDG 74
+ F+L+D DG+G R + + + F D +GDG
Sbjct: 91 RWYFKLYDVDGNGCIDRG--ELLNIIKAIRAINRCNEAMTAEEFTN--MVFDKIDINGDG 146
Query: 75 SITKEELGRVMRSLGQFAREEELQQML 101
++ EE ++ ++E L +L
Sbjct: 147 ELSLEEFMEGVQ------KDEVLLDIL 167
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 56.4 bits (136), Expect = 8e-10
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 29/160 (18%)
Query: 60 EFKEAFRLFDK-DGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
E ++ + F + G + +E+ ++ + F E+ L V + G
Sbjct: 26 EIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTV-FDKDNNGFIHFEE 84
Query: 119 HCGAVVNALDFGSGGWWFKSKSGHKNY----RGYISASDLRAVLQC------------LG 162
+ G K + Y GYI+ ++ ++
Sbjct: 85 FITVLST---TSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNED 141
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E E ++ + K +D + DG I + +EF E
Sbjct: 142 EATPEMRVKKIFKLMDKNEDGYI--------TLDEFREGS 173
Score = 41.8 bits (98), Expect = 9e-05
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 13 EFKEAFRLFDKDGDG--VQARHFRQFFSFNNSFYTT----TMLYSNSPVFLIVEFKEAFR 66
+F + ++ F G F F NN F T+L + S L + AF
Sbjct: 47 DFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFE 106
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAR------------EEELQQMLEEVDING 108
L+D + DG IT +E+ ++ S+ + E ++++ + +D N
Sbjct: 107 LYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNE 160
Score = 36.0 bits (83), Expect = 0.008
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 15 KEAFRLFDKDGDGVQAR-HFRQFF--SFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
AF L+D + DG + T+ + + V+ + F+L DK+
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVK--KIFKLMDKN 159
Query: 72 GDGSITKEELGRVMRS 87
DG IT +E +
Sbjct: 160 EDGYITLDEFREGSKV 175
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 54.8 bits (132), Expect = 4e-09
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 33/162 (20%)
Query: 58 IVEFKEAFRLFDKD--GDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY- 114
+ E F+ DG I KEE + + R ++ + D+ +
Sbjct: 36 VEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVKRNGVIEFG 94
Query: 115 ------SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQ--------C 160
+ + V + + FK + G+I +L+ ++
Sbjct: 95 EFVRSLGVFHPSAPVHEKVK-----FAFKLYDLRQT--GFIEREELKEMVVALLHESELV 147
Query: 161 LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
L ED+ E ++ + D DG+I +E+ + V
Sbjct: 148 LSEDMIEVMVDKAFVQADRKNDGKI--------DIDEWKDFV 181
Score = 52.5 bits (126), Expect = 2e-08
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
F +FD +GV F +F + + + ++PV V+F AF+L+D G I
Sbjct: 80 FDVFDVKRNGV--IEFGEFVR------SLGVFHPSAPVHEKVKF--AFKLYDLRQTGFIE 129
Query: 78 KEELGRVMRSL----GQFAREEELQQ----MLEEVDING 108
+EEL ++ +L E+ ++ + D
Sbjct: 130 REELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKN 168
Score = 37.4 bits (87), Expect = 0.003
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 15 KEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEA-----FRLFD 69
K AF+L+D G F L S + L + E F D
Sbjct: 114 KFAFKLYDLRQTG--------FIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQAD 165
Query: 70 KDGDGSITKEELGRVMR 86
+ DG I +E +
Sbjct: 166 RKNDGKIDIDEWKDFVS 182
Score = 35.9 bits (83), Expect = 0.009
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 31/123 (25%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF-------- 187
FK S G I + + L + + + DV +G I+F
Sbjct: 43 FKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLG 101
Query: 188 ---------------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDA-F 225
G+ EE E+V + +E ++ + + D F
Sbjct: 102 VFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAF 161
Query: 226 REV 228
+
Sbjct: 162 VQA 164
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 54.5 bits (131), Expect = 4e-09
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 38/165 (23%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML-EEVDINGKKAGNYSI 116
I E+ + F G ++ EE ++ + + + + + D NG ++
Sbjct: 27 IQEWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFRE 84
Query: 117 MNHCGAVVNALDFGSGG-------WWFKSKSGHKNYRGYISASDLRAVLQCLG------- 162
+ AL S G W F N GYIS +++ ++Q +
Sbjct: 85 F------IIALSVTSRGKLEQKLKWAFSMYDLDGN--GYISKAEMLEIVQAIYKMVSSVM 136
Query: 163 -----EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E E+ E + +++D + DG++ S EEF+
Sbjct: 137 KMPEDESTPEKRTEKIFRQMDTNRDGKL--------SLEEFIRGA 173
Score = 40.6 bits (95), Expect = 2e-04
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 22/125 (17%)
Query: 4 SNSPVFSIVEFKEAFRLFDKDGDGVQ-ARHFRQFFSFNNS-------FYTTTMLYSNSPV 55
S S+ EFK+ + F GD + A H + F N F + S +
Sbjct: 38 CPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKL 97
Query: 56 FLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR------------EEELQQMLEE 103
+++ AF ++D DG+G I+K E+ +++++ + E+ +++ +
Sbjct: 98 EQKLKW--AFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQ 155
Query: 104 VDING 108
+D N
Sbjct: 156 MDTNR 160
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
K AF ++D DG+G + + ++ M ++ FR D + D
Sbjct: 102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRD 161
Query: 74 GSITKEELGRVMRSLGQFAREEELQQMLE 102
G ++ EE R + + + ++L+
Sbjct: 162 GKLSLEEFIRGAK------SDPSIVRLLQ 184
Score = 31.7 bits (72), Expect = 0.19
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSF 195
F G++S + + + + + + D NGDG F
Sbjct: 34 FLRDCPS----GHLSMEEFKKIYGNFFPYGDASKFAEHVFRT-------FDANGDGTIDF 82
Query: 196 EEFVEIVYNM-GATTEEK 212
EF+ + E+K
Sbjct: 83 REFIIALSVTSRGKLEQK 100
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 51.0 bits (122), Expect = 6e-08
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 37/164 (22%)
Query: 60 EFKEAFRLFDK-DGDGSITKEELGRVMRSLGQFAREEEL-QQMLEEVDINGKKAGNYSIM 117
E ++ ++ F K G + K E ++ + F + + D + ++
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFK-- 83
Query: 118 NHCGAVVNALDFGSGG-------WWFKSKSGHKNYRGYISASDLRAVLQ----------- 159
+ AL S G W F+ N G IS ++ ++
Sbjct: 84 ----EFICALSVTSRGELNDKLIWAFQLYDLDNN--GLISYDEMLRIVDAIYKMVGSMVK 137
Query: 160 -CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
ED E+ + + +D + DG++ + EEF E
Sbjct: 138 LPEDEDTPEKRVNKIFNMMDKNKDGQL--------TLEEFCEGS 173
Score = 42.1 bits (99), Expect = 6e-05
Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
F +FD D +G F++F + S + + + AF+L+D D +G I+
Sbjct: 69 FNVFDADKNGY--IDFKEFI-------CALSVTSRGELNDKLIW--AFQLYDLDNNGLIS 117
Query: 78 KEELGRVMRSLGQFAR------------EEELQQMLEEVDING 108
+E+ R++ ++ + E+ + ++ +D N
Sbjct: 118 YDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNK 160
Score = 36.7 bits (85), Expect = 0.005
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFF--SFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
AF+L+D D +G + + + + V + F + DK+
Sbjct: 102 IWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVN--KIFNMMDKN 159
Query: 72 GDGSITKEELGRVMRS 87
DG +T EE +
Sbjct: 160 KDGQLTLEEFCEGSKR 175
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 51.4 bits (123), Expect = 7e-08
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
F LFD +G+ F +F ++ + N+P+ + F +F+L+D G I
Sbjct: 91 FDLFDTKHNGI--LGFEEFAR------ALSVFHPNAPIDDKIHF--SFQLYDLKQQGFIE 140
Query: 78 KEELGRVMRSL----GQFAREEELQQ----MLEEVDING 108
++E+ +++ + G ++ ++ EE D
Sbjct: 141 RQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKH 179
Score = 50.2 bits (120), Expect = 2e-07
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 33/162 (20%)
Query: 58 IVEFKEAFRLFDKD--GDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY- 114
I E F+ DG I KEE + + ++ + D +
Sbjct: 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILGFE 105
Query: 115 ------SIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL----GED 164
S+ + + + + + F+ + G+I +++ ++ G +
Sbjct: 106 EFARALSVFHPNAPIDDKIH-----FSFQLYDLKQQ--GFIERQEVKQMVVATLAESGMN 158
Query: 165 LSEEEIED----MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
L + IED +E D DG+I EE+ +V
Sbjct: 159 LKDTVIEDIIDKTFEEADTKHDGKI--------DKEEWRSLV 192
Score = 36.3 bits (84), Expect = 0.007
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGD 73
+F+L+D G ++ + +Q + + M ++ + I++ + F D D
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMV--VATLAESGMNLKDTVIEDIID--KTFEEADTKHD 180
Query: 74 GSITKEELGRVMR 86
G I KEE ++
Sbjct: 181 GKIDKEEWRSLVL 193
Score = 32.1 bits (73), Expect = 0.16
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 31/123 (25%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF-------- 187
FK S G I+ + + L + S + + D +G + F
Sbjct: 54 FKKISSAVIDDGLINKEEFQLALFKTNKKESLF-ADRVFDLFDTKHNGILGFEEFARALS 112
Query: 188 ---------------------NGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDA-F 225
G+ +E ++V A + D +++ D F
Sbjct: 113 VFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTF 172
Query: 226 REV 228
E
Sbjct: 173 EEA 175
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 51.2 bits (122), Expect = 1e-07
Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 70/208 (33%)
Query: 9 FSIVEFKEAFRLFDK-DGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
F+ E + +R F G+ F+ +S T F F
Sbjct: 88 FTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTY---------AHF--LFN 136
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNA 126
FD DG+G+I E+ + L + E+L+ DIN
Sbjct: 137 AFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKD----------------- 179
Query: 127 LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQ------------CLGEDLSEEEIEDMI 174
G I+ ++ A+++ L ED E +E
Sbjct: 180 --------------------GCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFF 219
Query: 175 KEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+++D + DG + + +EF+E
Sbjct: 220 QKMDRNQDGVV--------TIDEFLETC 239
Score = 36.6 bits (84), Expect = 0.008
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFF--SFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
K AF L+D + DG + ++ T + VE F+ D++
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVE--RFFQKMDRN 225
Query: 72 GDGSITKEELGRVMR 86
DG +T +E +
Sbjct: 226 QDGVVTIDEFLETCQ 240
Score = 27.7 bits (61), Expect = 5.1
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+ G I D L L E+++ D N DG + EE + I+
Sbjct: 140 ADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFN--------LYDINKDGCITKEEMLAIM 191
Query: 203 YNMGATTEEKTADQEEKELRDAFREVEDIADEV 235
++ T ++ + +
Sbjct: 192 KSIYDMMGRHTYPILRED------APLEHVERF 218
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 50.4 bits (120), Expect = 1e-07
Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 70/208 (33%)
Query: 9 FSIVEFKEAFRLF-DKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
F+ E + +R F ++ GV F+Q ++ + F
Sbjct: 48 FTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTY-----------AHYLFN 96
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNA 126
FD GS+ E+ + L + E+L+ DIN
Sbjct: 97 AFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD----------------- 139
Query: 127 LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG------------EDLSEEEIEDMI 174
GYI+ ++ +++ + ED + ++
Sbjct: 140 --------------------GYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFF 179
Query: 175 KEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+++D + DG + + +EF+E
Sbjct: 180 QKMDKNKDGIV--------TLDEFLESC 199
Score = 35.7 bits (82), Expect = 0.011
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFS--FNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
+ F L+D + DG + ++ T + V+ F+ DK+
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVD--VFFQKMDKN 185
Query: 72 GDGSITKEELGRVMR 86
DG +T +E +
Sbjct: 186 KDGIVTLDEFLESCQ 200
Score = 29.6 bits (66), Expect = 1.2
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 14/93 (15%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
G + D L L E++ D N DGY + EE ++IV
Sbjct: 100 TTQTGSVKFEDFVTALSILLRGTVHEKLRWTFN--------LYDINKDGYINKEEMMDIV 151
Query: 203 YNMGATTEEKTADQEEKELRDAFREVEDIADEV 235
+ + T +++ D
Sbjct: 152 KAIYDMMGKYTYPVLKED------TPRQHVDVF 178
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 49.6 bits (118), Expect = 2e-07
Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 33/163 (20%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFAREEEL-QQMLEEVDINGKKAGNYSIM 117
E ++ F G IT+++ + + Q + D N ++
Sbjct: 34 ELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDF--- 90
Query: 118 NHCGAVVNALDFGSG----GWWFKSKSGHKNYRGYISASDLRAVLQCLG----------- 162
++ G W F N G IS +++ ++ +
Sbjct: 91 KEYVIALHMTTAGKTNQKLEWAFSLYDVDGN--GTISKNEVLEIVMAIFKMITPEDVKLL 148
Query: 163 ---EDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E+ E+ E + K + D ++ + +EF+E
Sbjct: 149 PDDENTPEKRAEKIWKYFGKNDDDKL--------TEKEFIEGT 183
Score = 39.2 bits (91), Expect = 7e-04
Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 4 SNSPVFSIVEFKEAFRLFDKDGDGVQ--ARHFRQFFSFNN---SFYTTTMLYSNSPVFLI 58
+ + +F+ + F D D FR F S + F + +
Sbjct: 46 CPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKT 105
Query: 59 VE-FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEE 103
+ + AF L+D DG+G+I+K E+ ++ ++ + E+++ + ++
Sbjct: 106 NQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDD 151
Score = 37.7 bits (87), Expect = 0.002
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 17 AFRLFDKDGDGVQARH-----FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
AF L+D DG+G +++ F + + E + ++ F K+
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAE--KIWKYFGKN 169
Query: 72 GDGSITKEELGRVMRS 87
D +T++E +
Sbjct: 170 DDDKLTEKEFIEGTLA 185
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 49.9 bits (119), Expect = 2e-07
Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 36/166 (21%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRV-------MRSLGQFAREEELQQMLEEVDINGKK 110
I+ F S+ +V + L +E + ++
Sbjct: 50 ILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSL 109
Query: 111 -----AGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCL---- 161
S+ + + + + G ++ DL ++ CL
Sbjct: 110 SFEDFLDLLSVFSDTATPDIKSHYAFRIF-------DFDDDGTLNREDLSRLVNCLTGEG 162
Query: 162 -GEDLSEEEIED----MIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
LS E++ +++E D+D DG I + EF ++
Sbjct: 163 EDTRLSASEMKQLIDNILEESDIDRDGTI--------NLSEFQHVI 200
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
R+F + F F + F T ++ AFR+FD D DG++
Sbjct: 97 CRVFSTS-PAKDSLSFEDFLDLLSVFSDTATPD--------IKSHYAFRIFDFDDDGTLN 147
Query: 78 KEELGRVMRSL-----GQFAREEELQQ----MLEEVDING 108
+E+L R++ L E++Q +LEE DI+
Sbjct: 148 REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187
Score = 34.1 bits (78), Expect = 0.034
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 12 VEFKEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSP--------VFLIVEFKE 63
++ AFR+FD D DG + + L + +++
Sbjct: 129 IKSHYAFRIFDFDDDG--------TLNREDLSRLVNCLTGEGEDTRLSASEMKQLID--N 178
Query: 64 AFRLFDKDGDGSITKEELGRVM 85
D D DG+I E V+
Sbjct: 179 ILEESDIDRDGTINLSEFQHVI 200
Score = 27.1 bits (60), Expect = 7.0
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 186 DFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
DF+ DG + E+ +V + E+ E +
Sbjct: 139 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL 175
Score = 26.7 bits (59), Expect = 8.0
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 165 LSEEEIEDMIK---EVDVDGDGRIDFNGDGYFSFEEFVEI 201
L+++EI + E+ ++ + FE+ + +
Sbjct: 45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSL 84
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 46.7 bits (111), Expect = 4e-07
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQC-LGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
+ S K + DL+ +L+ + + ++ + KE+D++ DG ++
Sbjct: 16 YHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVN-------- 67
Query: 195 FEEFVEIVYNMGATTEEKTADQEEKE 220
F+EF+ +V MG +K+ ++ KE
Sbjct: 68 FQEFLILVIKMGVAAHKKSHEESHKE 93
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 49.1 bits (117), Expect = 5e-07
Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 70/208 (33%)
Query: 9 FSIVEFKEAFRLF-DKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
F+ E + +R F ++ GV F++ +S +T F
Sbjct: 61 FTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTY-----------AHFLFN 109
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNA 126
FD D +G+++ E+ + + L + +E+L DIN
Sbjct: 110 AFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKD----------------- 152
Query: 127 LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQ------------CLGEDLSEEEIEDMI 174
GYI+ ++ +++ L ED + +E
Sbjct: 153 --------------------GYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFF 192
Query: 175 KEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
+++D + DG + + +EF+E
Sbjct: 193 QKMDKNKDGVV--------TIDEFIESC 212
Score = 41.8 bits (98), Expect = 1e-04
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 4 SNSPVFSIVEFKEAFRLFDKDGDGVQ--ARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEF 61
S V + FKE + F GD F F + +N + + L
Sbjct: 77 CPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTV 136
Query: 62 KE----AFRLFDKDGDGSITKEELGRVMRSLGQFAR------------EEELQQMLEEVD 105
+E AF L+D + DG ITKEE+ +M+++ + ++ +++D
Sbjct: 137 QEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196
Query: 106 ING 108
N
Sbjct: 197 KNK 199
Score = 37.2 bits (86), Expect = 0.004
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 15 KEAFRLFDKDGDG-VQARHFRQFFS--FNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
AF L+D + DG + ++ T + VE F+ DK+
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVE--TFFQKMDKN 198
Query: 72 GDGSITKEELGRVMR 86
DG +T +E +
Sbjct: 199 KDGVVTIDEFIESCQ 213
Score = 28.7 bits (64), Expect = 2.4
Identities = 23/177 (12%), Positives = 47/177 (26%), Gaps = 51/177 (28%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
E + +R F ++ G + +E +
Sbjct: 65 ELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHF------------------ 106
Query: 119 HCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
+ NA D ++ G +S D L L +E++
Sbjct: 107 ----LFNAFD--------------TDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFN--- 145
Query: 179 VDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEV 235
D N DGY + EE ++I+ + + T +++ +
Sbjct: 146 -----LYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKED------APRQHVETF 191
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 47.9 bits (114), Expect = 8e-07
Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 25/158 (15%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQF-AREEELQQMLEEVDINGKKAGNYS-I 116
E ++ ++ F G + ++ + F + + D N +S
Sbjct: 26 EVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEF 85
Query: 117 MNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG------------ED 164
+ W FK + GYI+ +++ ++ + E+
Sbjct: 86 IQALSVTSRGTLDEKLRWAFKLYDLDND--GYITRNEMLDIVDAIYQMVGNTVELPEEEN 143
Query: 165 LSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIV 202
E+ ++ + +D + DG++ + +EF E
Sbjct: 144 TPEKRVDRIFAMMDKNADGKL--------TLQEFQEGS 173
Score = 43.3 bits (102), Expect = 2e-05
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 22/125 (17%)
Query: 4 SNSPVFSIVEFKEAFRLFDKDGD-GVQARHFRQFFSFNNS-------FYTTTMLYSNSPV 55
S F++ ++ F GD A F N F + S +
Sbjct: 38 CPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTL 97
Query: 56 FLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR------------EEELQQMLEE 103
+ + AF+L+D D DG IT+ E+ ++ ++ Q E+ + ++
Sbjct: 98 DEKLRW--AFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAM 155
Query: 104 VDING 108
+D N
Sbjct: 156 MDKNA 160
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 15 KEAFRLFDKDGDGVQARH-FRQFF--SFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKD 71
+ AF+L+D D DG R+ + T + + V+ F + DK+
Sbjct: 102 RWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVD--RIFAMMDKN 159
Query: 72 GDGSITKEELGRVMRS 87
DG +T +E ++
Sbjct: 160 ADGKLTLQEFQEGSKA 175
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 47.5 bits (113), Expect = 1e-06
Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 70/206 (33%)
Query: 9 FSIVEFKEAFRLF-DKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
F+ E + +R F ++ GV F+Q ++ + F
Sbjct: 15 FTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTY-----------AHYLFN 63
Query: 67 LFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNA 126
FD GS+ E+ + L + E+L+ DIN
Sbjct: 64 AFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD----------------- 106
Query: 127 LDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLG------------EDLSEEEIEDMI 174
GYI+ ++ +++ + ED + ++
Sbjct: 107 --------------------GYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFF 146
Query: 175 KEVDVDGDGRIDFNGDGYFSFEEFVE 200
+++D + DG + + +EF+E
Sbjct: 147 QKMDKNKDGIV--------TLDEFLE 164
Score = 30.2 bits (68), Expect = 0.53
Identities = 24/177 (13%), Positives = 44/177 (24%), Gaps = 51/177 (28%)
Query: 60 EFKEAFRLF-DKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIMN 118
E + +R F ++ G + +E ++
Sbjct: 19 ELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHY------------------ 60
Query: 119 HCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVD 178
+ NA D G + D L L E++
Sbjct: 61 ----LFNAFD--------------TTQTGSVKFEDFVTALSILLRGTVHEKLRWTFN--- 99
Query: 179 VDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEV 235
D N DGY + EE ++IV + + T +++ D
Sbjct: 100 -----LYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKED------TPRQHVDVF 145
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 48.5 bits (116), Expect = 1e-06
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 25/132 (18%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDI------NGKKAGNYS 115
K +L + +G E ++ E L ++E +D N +
Sbjct: 322 KVTEQLIEAISNGDF--ESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKP 379
Query: 116 IMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIK 175
+ L +S I+ + Q L +
Sbjct: 380 VHTTILNPHIHLM--------GDESA------CIAYIRIT---QYLDAGGIPRTAQSEET 422
Query: 176 EVDVDGDGRIDF 187
V DG+
Sbjct: 423 RVWHRRDGKWQI 434
Score = 47.7 bits (114), Expect = 3e-06
Identities = 10/68 (14%), Positives = 15/68 (22%), Gaps = 8/68 (11%)
Query: 43 FYTTTMLYSNSPVFLIVEFK--EAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQM 100
FY + NS V D I + + + + G Q
Sbjct: 367 FYFENLWSRNS---KPVHTTILNPHIHLMGDESACIAYIRITQYLDAGG---IPRTAQSE 420
Query: 101 LEEVDING 108
V
Sbjct: 421 ETRVWHRR 428
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 44.8 bits (106), Expect = 8e-06
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 18 FRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGSIT 77
R+F + F F + F T ++ AFR+FD D DG++
Sbjct: 66 CRVFSTS-PAKDSLSFEDFLDLLSVFSDTATPD--------IKSHYAFRIFDFDDDGTLN 116
Query: 78 KEELGRVMRSL-----GQFAREEELQQ----MLEEVDING 108
+E+L R++ L E++Q +LEE DI+
Sbjct: 117 REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Score = 44.0 bits (104), Expect = 1e-05
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 147 GYISASDLRAVLQCL-----GEDLSEEEIED----MIKEVDVDGDGRIDFNGDGYFSFEE 197
G ++ DL ++ CL LS E++ +++E D+D DG I + E
Sbjct: 113 GTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTI--------NLSE 164
Query: 198 FVEIV 202
F ++
Sbjct: 165 FQHVI 169
Score = 34.4 bits (79), Expect = 0.027
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 15 KEAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEF------KEAFRLF 68
AFR+FD D DG + + L +
Sbjct: 101 HYAFRIFDFDDDG--------TLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEES 152
Query: 69 DKDGDGSITKEELGRVMRS 87
D D DG+I E V+
Sbjct: 153 DIDRDGTINLSEFQHVISR 171
Score = 27.0 bits (60), Expect = 6.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 186 DFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
DF+ DG + E+ +V + E+ E +
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL 144
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 42.3 bits (100), Expect = 8e-06
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-CLGEDLSEEE-IEDMIKEVDVDGDGRIDFNGDGYF 193
F+ + + +S +L+ ++Q L ++D+ +E+D +GDG +
Sbjct: 13 FEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVS------- 65
Query: 194 SFEEFVEIV 202
FEEF +V
Sbjct: 66 -FEEFQVLV 73
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 42.1 bits (99), Expect = 2e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
K G+++ R +L L + ++ + D+D DG++ EEF+
Sbjct: 25 KTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLT--------AEEFI 71
Score = 40.1 bits (94), Expect = 1e-04
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
++++ F DK G +T + ++ + +L + DI+
Sbjct: 15 KYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQD 62
Score = 33.2 bits (76), Expect = 0.030
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 21/78 (26%)
Query: 13 EFKEAFRLFDKDGDG----VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
++++ F DK G QAR ++ S+ P + + L
Sbjct: 15 KYRQLFNSHDKTMSGHLTGPQARTI--------------LMQSSLPQ---AQLASIWNLS 57
Query: 69 DKDGDGSITKEELGRVMR 86
D D DG +T EE M
Sbjct: 58 DIDQDGKLTAEEFILAMH 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 51/375 (13%), Positives = 97/375 (25%), Gaps = 142/375 (37%)
Query: 3 YSNSPVFSIVEFKEAFR--LFDKDG-------DGVQ-ARHFRQFFSFNNSFYT--TTMLY 50
+S++ I + R L K VQ A+ + +FN S TT
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILLTT--- 272
Query: 51 SNSPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAR--EEELQQMLEEVDING 108
V + + ++T +E + + Q + EV
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDE------VKSLLLKYLDCRPQDLPREV---- 322
Query: 109 KKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISAS-------DLRA----- 156
N ++ ++ G W I +S + R
Sbjct: 323 -LTTNPRRLSIIAE---SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 157 ------------VLQCLGEDLSEEEIEDMIKE---------------------------- 176
+L + D+ + ++ ++ +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 177 -----------VD-------VDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEE 218
VD D D I D YF + I +++ K + E
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----YSHIGHHL------KNIEHPE 488
Query: 219 KELRDAFREV-------------EDIADEVSDCVRNT-GELR---EFIVLREIDSGGRLV 261
+ FR V + A S + NT +L+ +I + D
Sbjct: 489 RM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDP----- 539
Query: 262 VVRFDRFVFRFGRFV 276
+++R V F+
Sbjct: 540 --KYERLVNAILDFL 552
Score = 41.0 bits (95), Expect = 5e-04
Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 71/224 (31%)
Query: 31 RHFRQFFSFNNSFYTTT----MLYSNSP---VFLIVEFKEAFRLFDKDGDGSITKEELGR 83
+ F + F S + T +++ + V ++V + L +K S T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSI 431
Query: 84 VMRSLGQFAREEEL-QQMLEEVDINGK---------KAGNYS---IMNHCGAVVNA---- 126
+ + E L + +++ +I Y I +H + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 127 ------LDFGSGGWWFKSKSGH------------------KNYRGYISASD------LRA 156
LDF + + K H K Y+ YI +D + A
Sbjct: 492 LFRMVFLDFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 157 VLQCL---GEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEE 197
+L L E+L + D++ RI + FEE
Sbjct: 548 ILDFLPKIEENLICSKYTDLL---------RIALMAEDEAIFEE 582
Score = 37.9 bits (87), Expect = 0.004
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 49/238 (20%)
Query: 127 LDFGSGGWWFKSKS-GHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRI 185
+DF +G ++ K ++ D + V LS+EEI+ +I D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 186 DF------NGDGYFSF-EEFVEIVYNMGAT---TEEKTADQEEK---ELRD-AFREVEDI 231
F + F EE + I Y + TE++ + E RD + + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 232 AD-EVS--DCVRNTGELREFIVLREIDSGGRLVV---------------VRFDRFVFRFG 273
A VS +LR+ L E+ +++ + +
Sbjct: 127 AKYNVSRLQPYL---KLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 274 RFVVF--RLGKF-----VVFMFEVFCDHYNEISAGVSPTILNPDRTSLDFREAGEGKR 324
F +F L V+ M + I + + L R
Sbjct: 182 -FKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELR 235
Score = 36.0 bits (82), Expect = 0.016
Identities = 45/309 (14%), Positives = 81/309 (26%), Gaps = 115/309 (37%)
Query: 7 PVFSIVEFKE----------AFRLFD----KDGDGVQARHFRQFFSFNNSFYTTTMLYSN 52
+ S E RLF K + VQ +F +L N
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-----KFVE--------EVLRIN 90
Query: 53 SPVFLIVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFA-----REE---ELQQMLEEV 104
FL+ K R + E+ R+ FA R + +L+Q L E+
Sbjct: 91 YK-FLMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 105 DINGKKAGNYSI--MNHCGAVVNALD----------FGSGGWWFKSKSGHKNYRGYISAS 152
+ A N I + G ALD +W
Sbjct: 148 ----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--------------- 188
Query: 153 DLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
L S E + +M++++ +ID N
Sbjct: 189 --------LKNCNSPETVLEMLQKLLY----QIDPNWT---------------------- 214
Query: 213 TADQEEKELRDAFREVEDIADEVSDCVRNTGELREFIVLREI---------DSGGRLVVV 263
+ + I E+ +++ +VL + + ++++
Sbjct: 215 ---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 264 RFDRFVFRF 272
+ V F
Sbjct: 272 TRFKQVTDF 280
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 40.9 bits (96), Expect = 4e-05
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F +G K GY++ DLR +++ L ++ ++K++D DG++
Sbjct: 15 FHKFAGDK---GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG---- 67
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEKE 220
F+ F ++ + + +++
Sbjct: 68 ----FQSFFSLIAGLTIACNDYFVVHMKQK 93
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 44.1 bits (103), Expect = 4e-05
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 23/151 (15%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNY----S 115
EF+ +F FD+ G + E+ + S+G E E +++ VD N +
Sbjct: 726 EFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFID 785
Query: 116 IMNHCGAVVNALD--FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDM 173
M+ A + D S FK +G KN YI+ +LR L D +E I M
Sbjct: 786 FMSRETADTDTADQVMAS----FKILAGDKN---YITVDELRRELP---PDQAEYCIARM 835
Query: 174 IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYN 204
D G + F +Y
Sbjct: 836 APYNGRDAV-------PGALDYMSFSTALYG 859
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 40.8 bits (96), Expect = 5e-05
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
K+ G++S ++R + G L + + D G++ ++F
Sbjct: 21 KDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLS--------KDQFA 67
Score = 38.5 bits (90), Expect = 3e-04
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
++ E F DKD DG ++ E+ + G L + D
Sbjct: 11 KYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDC 58
Score = 32.8 bits (75), Expect = 0.029
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 13 EFKEAFRLFDKDGDG----VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
++ E F DKD DG ++ R L + P + L
Sbjct: 11 KYDEIFLKTDKDMDGFVSGLEVREI--------------FLKTGLPS---TLLAHIWSLC 53
Query: 69 DKDGDGSITKEELGRVMR 86
D G ++K++
Sbjct: 54 DTKDCGKLSKDQFALAFH 71
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 40.6 bits (95), Expect = 6e-05
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F SG + + ++ S+L+ +L LG+ E + ++ +D + D +D
Sbjct: 19 FHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVD---- 74
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
F+E+ + ++ + E +K+ R
Sbjct: 75 ----FQEYCVFLSSIAMMSNEFFEGFPDKQPR 102
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 40.6 bits (95), Expect = 6e-05
Identities = 12/87 (13%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-CLGEDLSEEE-IEDMIKEVDVDGDGRIDFNGDGYF 193
F + + + + +S ++ + ++ L L + +++ +K +DV+ D +
Sbjct: 28 FFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELK------- 80
Query: 194 SFEEFVEIVYNMGATTEEKTADQEEKE 220
F E+ ++ + +K + K+
Sbjct: 81 -FNEYWRLIGELAKEIRKKKDLKIRKK 106
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 40.7 bits (95), Expect = 7e-05
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F SG + + ++ S+L+ +L LG+ E + ++ +D + D +D
Sbjct: 28 FHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD---- 83
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEKELR 222
F+E+ + + E +K+ R
Sbjct: 84 ----FQEYCVFLSCIAMMCNEFFEGFPDKQPR 111
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 135 WFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
F+S + +IS S + LS E+ + + D D DG +
Sbjct: 27 QFRSLQPDPS--SFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALT-------- 74
Query: 195 FEEFV 199
EF
Sbjct: 75 LPEFC 79
Score = 37.0 bits (86), Expect = 0.001
Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 2/52 (3%)
Query: 58 IVEFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+ FR D I+ EL + E D +
Sbjct: 21 REYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCD 70
Score = 31.6 bits (72), Expect = 0.094
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 21/80 (26%)
Query: 11 IVEFKEAFRLFDKDGDG----VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFR 66
+ FR D A++F S + E +
Sbjct: 21 REYYVNQFRSLQPDPSSFISGSVAKNF--------------FTKSKLSI---PELSYIWE 63
Query: 67 LFDKDGDGSITKEELGRVMR 86
L D D DG++T E
Sbjct: 64 LSDADCDGALTLPEFCAAFH 83
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 40.3 bits (94), Expect = 1e-04
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAR--------EEELQQM----LEEVDING 108
F++ D DG+ + EL + + + E+EL + L + D N
Sbjct: 73 YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNN 129
Score = 40.3 bits (94), Expect = 2e-04
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 20/66 (30%)
Query: 147 GYISASDLRAVLQCL--------GEDLSEEEIEDMI----KEVDVDGDGRIDFNGDGYFS 194
+ +L + + +SE+E+ ++I ++ D + DG I
Sbjct: 83 NLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI--------D 134
Query: 195 FEEFVE 200
+ EF +
Sbjct: 135 YAEFAK 140
Score = 32.6 bits (74), Expect = 0.062
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 17 AFRLFDKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDGDGS 75
F++ D DG+ + + + + S LI R DK+ DG
Sbjct: 73 YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGY 132
Query: 76 ITKEELGRVMR 86
I E + ++
Sbjct: 133 IDYAEFAKSLQ 143
Score = 29.6 bits (66), Expect = 0.70
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 153 DLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEK 212
L V+ ++S +E++ ++ D++G+ E + ++ +
Sbjct: 52 HLEGVINKPEAEMSPQELQLHYFKM-------HDYDGNNLLDGLELSTAITHVHKEEGSE 104
Query: 213 TADQEEKELRDAFREVEDIADEV 235
A ++ E+ +I D V
Sbjct: 105 QAPLMSED------ELINIIDGV 121
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 38.9 bits (91), Expect = 2e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
+ G+I S + L E+ + + D D DG + +EF
Sbjct: 20 PDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALT--------LDEFC 66
Score = 37.4 bits (87), Expect = 6e-04
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+ F+ D +G I EL + E D +
Sbjct: 10 YYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKD 57
Score = 31.6 bits (72), Expect = 0.075
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 21/78 (26%)
Query: 13 EFKEAFRLFDKDGDG----VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLF 68
+ F+ D +G A+ F S P+ +E + L
Sbjct: 10 YYVNQFKTIQPDLNGFIPGSAAKEF--------------FTKSKLPI---LELSHIWELS 52
Query: 69 DKDGDGSITKEELGRVMR 86
D D DG++T +E
Sbjct: 53 DFDKDGALTLDEFCAAFH 70
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F SG + + ++ S+L+ +L LG+ E + ++ +D + D +D
Sbjct: 16 FHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD---- 71
Query: 191 GYFSFEEFVEIV 202
F+E+ +
Sbjct: 72 ----FQEYCVFL 79
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 42.1 bits (98), Expect = 2e-04
Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 69/239 (28%)
Query: 16 EAFRLFDKDGDGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEA---------FR 66
+ F+ D + G + SF+ + + + EA +
Sbjct: 676 KIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRK 735
Query: 67 LFDK--DGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSI-MNHCGAV 123
LF + D ++ EL +L +V ++ C ++
Sbjct: 736 LFVQLAGDDMEVS----------------ATELMNILNKVVTRHPDLKTDGFGIDTCRSM 779
Query: 124 VNALDFGSGGW---------WFKSKSGHKNYR-------GYISASDLRAVLQCLGEDLSE 167
V +D + G W K Y+ G I +++L + G L++
Sbjct: 780 VAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQ 839
Query: 168 EEIEDMIKEVDVDGDGRIDF----------------------NGDG--YFSFEEFVEIV 202
+I+ D G +DF NG G + +E++++
Sbjct: 840 HIYSMIIRRYS-DETGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVNIQEWLQLT 897
Score = 38.6 bits (89), Expect = 0.003
Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 56/197 (28%)
Query: 95 EELQQMLEEVDINGKKAGNYSI-MNHCGAVVNALDFGSGGW---------WFKSKSGHKN 144
+ELQ +L + K + C ++VN +D G W + ++
Sbjct: 553 KELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTI 612
Query: 145 YR-------GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF---------- 187
+R G +SA ++R ++ G L + + ++ D + IDF
Sbjct: 613 FRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL 671
Query: 188 ------------NGDG--YFSFEEFV--------------EIVYNMGATTEEKTADQEEK 219
G ++ ++M + E +EE+
Sbjct: 672 EILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEER 731
Query: 220 ELRDAFREVEDIADEVS 236
+ R F ++ EVS
Sbjct: 732 QFRKLFVQLAGDDMEVS 748
Score = 30.9 bits (69), Expect = 0.62
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQF-----FSFNNSFYTTTML-YSNSP--------V 55
I +++ ++ F+ D G + + F N Y+ + YS+ +
Sbjct: 803 IKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDETGNMDFDNFI 862
Query: 56 FLIVEFK---EAFRLFDKDGDGSIT 77
+V AFR DK+G G I
Sbjct: 863 SCLVRLDAMFRAFRSLDKNGTGQIQ 887
Score = 30.1 bits (67), Expect = 1.00
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 5 NSPVFSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKE 63
+ F I + + D D G + F+ ++ I +++
Sbjct: 767 KTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNN------------------IKKWQG 808
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLG 89
++ F+ D G+I EL + G
Sbjct: 809 IYKRFETDRSGTIGSNELPGAFEAAG 834
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 39.1 bits (91), Expect = 3e-04
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
G+I+ R G L + + + D++ DGR+D EF
Sbjct: 47 GFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMD--------QVEFS 89
Score = 28.7 bits (64), Expect = 1.2
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 20/77 (25%)
Query: 13 EFKEAFR-LFDKDG--DGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFD 69
+ + F L G G QAR+F S P + + L D
Sbjct: 34 KHDQQFHSLKPISGFITGDQARNF--------------FFQSGLPQ---PVLAQIWALAD 76
Query: 70 KDGDGSITKEELGRVMR 86
+ DG + + E M+
Sbjct: 77 MNNDGRMDQVEFSIAMK 93
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 38.2 bits (89), Expect = 3e-04
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F S K + +S +L+ +L + + I+++ + +D + D ++D
Sbjct: 18 FHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVD---- 73
Query: 191 GYFSFEEFVEIV 202
F+EF+ +V
Sbjct: 74 ----FQEFISLV 81
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 38.2 bits (89), Expect = 4e-04
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 140 SGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFS 194
S + + IS S R +LQ L + + + + +I+ +D + DGRI
Sbjct: 22 SKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRIS-------- 73
Query: 195 FEEFVEIVYNMGATTEEKTADQEEK 219
F+E+ ++ + + +QE++
Sbjct: 74 FDEYWTLIGGITGPIAKLIHEQEQQ 98
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 38.4 bits (89), Expect = 5e-04
Identities = 15/90 (16%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ------CLGEDLSEEEIEDMIKEVDVDGDGRIDFNG 189
F S + ++ + + +++ E+ +E+ IE +++++D + D ++
Sbjct: 18 FHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLS--- 74
Query: 190 DGYFSFEEFVEIVYNMGATTEEKTADQEEK 219
FEEF+ ++ + + EK + +E
Sbjct: 75 -----FEEFIMLMARLTWASHEKMHEGDEG 99
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 37.8 bits (88), Expect = 5e-04
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ--CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYF 193
F SG + + +S +L+ +++ ++ E I+D++K +D + D ID
Sbjct: 16 FHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEID------- 68
Query: 194 SFEEFVEIV 202
F+E+ +
Sbjct: 69 -FKEYSVFL 76
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 37.5 bits (87), Expect = 6e-04
Identities = 13/89 (14%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F S + + +S +++ +L +GE + EE ++ ++ +D + D ++D
Sbjct: 17 FHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVD---- 72
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEK 219
F+E+ + + + + ++
Sbjct: 73 ----FQEYAVFLALITVMSNDFFQGSPDR 97
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 37.5 bits (87), Expect = 6e-04
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F SG + ++ +L+ +++ L ++ ++ ++K++D +GD ++D
Sbjct: 15 FSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVD---- 70
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEK 219
F EF+ V + + + K
Sbjct: 71 ----FSEFIVFVAAITSACHKYFEKAGLK 95
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 37.1 bits (86), Expect = 8e-04
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F+ +G + + ++L+ +LQ + E + + +D + D +D
Sbjct: 16 FQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD---- 71
Query: 191 GYFSFEEFVEIV 202
F E+V +
Sbjct: 72 ----FVEYVRSL 79
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F + SG + + +S +L+ +L L +E ++ ++D + D +D
Sbjct: 16 FHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVD---- 71
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEK 219
F EFV +V + + +Q++K
Sbjct: 72 ----FNEFVVLVAALTVACNDFFQEQQKK 96
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 36.7 bits (85), Expect = 0.001
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F + SG + + +S +L+ +LQ L + ++ ++KE+D +GDG +D
Sbjct: 15 FHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVD---- 70
Query: 191 GYFSFEEFVEIV 202
F+EFV +V
Sbjct: 71 ----FQEFVVLV 78
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 38.0 bits (88), Expect = 0.001
Identities = 19/172 (11%), Positives = 46/172 (26%), Gaps = 44/172 (25%)
Query: 66 RLFDK--DGDGSITKEELGRVMRSLGQFARE------EELQQMLEEVDINGKKAGNYSIM 117
I +L ++ +E + ++ +++ +
Sbjct: 9 HHSSGLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEF 68
Query: 118 NHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQC----LGEDLSEEEIEDM 173
+ + + G + +SDL ++ G +S E + +
Sbjct: 69 ARL--------WKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLV 120
Query: 174 IKEVDVDGDGRIDF----------------------NGDG-YFSFEEFVEIV 202
D GR+ F +G G Y + E++ +V
Sbjct: 121 TLRYS-DSVGRVSFPSLVCFLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSLV 171
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 36.7 bits (85), Expect = 0.001
Identities = 7/49 (14%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGK 109
+++ +R + G + + ++ G + L ++ + D +GK
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLKKSGL--PDLILGKIWDLADTDGK 59
Score = 35.2 bits (81), Expect = 0.004
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNG 189
G + A D A L+ G L + + + D DG G +
Sbjct: 22 AGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQE 66
Score = 33.2 bits (76), Expect = 0.024
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 14 FKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRLFDKDG 72
+++ +R + G V A F S P + + + L D DG
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLK-----------KSGLP---DLILGKIWDLADTDG 58
Query: 73 DGSITKEELGRVMR 86
G ++K+E +R
Sbjct: 59 KGVLSKQEFFVALR 72
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVY 203
G++S ++ VL L + + + + D+D DG +D +EF ++
Sbjct: 29 GFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLD--------RDEFAVAMF 75
Score = 28.6 bits (64), Expect = 1.1
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 20/94 (21%)
Query: 11 IVEFKEAFR-LFDKDG--DGVQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKEAFRL 67
++ F L +G G + + +L S PV + L
Sbjct: 14 KAKYDAIFDSLSPVNGFLSGDKVKPV--------------LLNSKLPV---DILGRVWEL 56
Query: 68 FDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
D D DG + ++E M + +E + L
Sbjct: 57 SDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMSL 90
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 36.0 bits (83), Expect = 0.002
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F+ +G IS ++ + ++ M+K++D+D DG++D
Sbjct: 19 FQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLD---- 74
Query: 191 GYFSFEEFVEIVYNMGATTEEKTADQEEK 219
F+EF+ ++ + + +K
Sbjct: 75 ----FQEFLNLIGGLAIACHDSFIKSTQK 99
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 35.9 bits (83), Expect = 0.002
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ---CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGY 192
F SG + + +S +L+ ++Q +G L + EI +++++D + D ++
Sbjct: 16 FHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN------ 69
Query: 193 FSFEEFVEIV 202
F+E+V +
Sbjct: 70 --FQEYVTFL 77
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 35.5 bits (82), Expect = 0.003
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQ-----CLGEDLSEEEIEDMIKEVDVDGDGRIDFNGD 190
F SG + + + S+L+ ++ L E +E ++ +++ +D +GDG D
Sbjct: 15 FHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECD---- 70
Query: 191 GYFSFEEFVEIV 202
F+EF+ V
Sbjct: 71 ----FQEFMAFV 78
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 37.9 bits (87), Expect = 0.004
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 42/149 (28%)
Query: 95 EELQQMLEEVDINGKKAGNYSI-MNHCGAVVNALDFGSGGW---------WFKSKSGHKN 144
ELQ +L V + + + C +V+ LD G W K + K
Sbjct: 551 FELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKI 610
Query: 145 YR-------GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDF---------- 187
YR G +++ ++R L+ G L + + ++ D + IDF
Sbjct: 611 YREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL 669
Query: 188 ------------NGDG--YFSFEEFVEIV 202
G ++
Sbjct: 670 EILFKIFKQLDPENTGTIQLDLISWLSFS 698
Score = 29.8 bits (66), Expect = 1.5
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 18/85 (21%)
Query: 11 IVEFKEAFRLFDKDGDG-VQARHFRQ-----FFSFNNSFYTTTML-YSNSP--------V 55
I ++++ +R D D G + + R+ F + + +++ V
Sbjct: 604 IQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFADDELIIDFDNFV 663
Query: 56 FLIVEFK---EAFRLFDKDGDGSIT 77
+V + + F+ D + G+I
Sbjct: 664 RCLVRLEILFKIFKQLDPENTGTIQ 688
Score = 29.4 bits (65), Expect = 1.8
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 5 NSPVFSIVEFKEAFRLFDKDGDG-VQARHFRQFFSFNNSFYTTTMLYSNSPVFLIVEFKE 63
S FSI K + D+DG G + + F ++ I ++++
Sbjct: 568 KSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK------------------IQKYQK 609
Query: 64 AFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQML 101
+R D D G++ E+ + + G F +L Q++
Sbjct: 610 IYREIDVDRSGTMNSYEMRKALEEAG-FKLPCQLHQVI 646
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 37.2 bits (85), Expect = 0.007
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 25/117 (21%)
Query: 135 WFKS--KSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGY 192
W S + KN ++ +L+ L+ L + + + +E D ++
Sbjct: 12 WIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLED----- 66
Query: 193 FSFEEFVEIVYNMGATTEEKTADQEEKELRDAFREVEDIADEVSDCVRNTGELREFI 249
EE + + E+ AF E A+ +S L F+
Sbjct: 67 ---EEIETFYKML----------TQRAEIDRAFEEAAGSAETLS-----VERLVTFL 105
Score = 36.0 bits (82), Expect = 0.014
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 61 FKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYS 115
R DK+ D + +EL ++ L + +++ E D + +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDE 67
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 31.8 bits (72), Expect = 0.10
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFV 199
G I+ ++ + + L + + K DVD DG +D EEF
Sbjct: 65 GKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLD--------DEEFA 107
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 30.7 bits (69), Expect = 0.20
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 62 KEAFRLFDKDGDGSITKEELGRVMRSLGQ------------FAREEELQQM----LEEVD 105
K F L D + DG + ++EL + + EEE +M ++ VD
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 106 ING 108
N
Sbjct: 83 TNQ 85
Score = 30.3 bits (68), Expect = 0.25
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 143 KNYRGYISASDLRAVLQCLGEDLS------------EEEIEDMIKEVDVDGDGRIDFNGD 190
N G + +L A+ E + EEE M + V +D N D
Sbjct: 31 INSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMK----NVDTNQD 86
Query: 191 GYFSFEEFVE 200
+ EEF+
Sbjct: 87 RLVTLEEFLA 96
Score = 28.0 bits (62), Expect = 1.4
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 15 KEAFRLFDKDGDGVQARH-FRQFFSFNNSFYTTTMLYSNSPVFLIVEFKE----AFRLFD 69
K F L D + DGV F+ + + E + D
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 70 KDGDGSITKEE 80
+ D +T EE
Sbjct: 83 TNQDRLVTLEE 93
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 30.5 bits (69), Expect = 0.21
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 18/74 (24%)
Query: 136 FKSKSGHKNYRGYISASDLRAVLQC-LGEDLSEEE------IEDMIKEVDVDGDGRIDFN 188
F + I L +++ LS + + D+ ++ D + D +ID
Sbjct: 16 FHKYTRRD---DKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKID-- 70
Query: 189 GDGYFSFEEFVEIV 202
F EF+ ++
Sbjct: 71 ------FSEFLSLL 78
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 30.0 bits (68), Expect = 0.25
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
G ++++DL + + + + +S K DV+ DGR++
Sbjct: 29 GKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVN 68
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 31.2 bits (70), Expect = 0.29
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAR--------EEELQQMLEEVDINGK 109
F + DK+ DG +T EE+ ++ + +E ++EE+D
Sbjct: 104 FDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNL 156
Score = 26.6 bits (58), Expect = 9.7
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 146 RGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM 205
+ ++ +L+ + L + + + VD + DGR+ EE EI+
Sbjct: 76 KQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLT--------AEEVKEIIALS 127
Query: 206 GATTEEKTADQEEKELRDAFREVED 230
+ + + E E D
Sbjct: 128 ASANKLSKIKERADEYTALIMEELD 152
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 31.5 bits (70), Expect = 0.29
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 133 GWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRIDFN 188
W F H GY+S ++L + L E + D+D D I +
Sbjct: 158 HWQFGQLDQHPI-DGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALD 210
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 31.5 bits (70), Expect = 0.37
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 127 LDFGSGGWWFKSK-----SGHKNYRGYISASD 153
L +GG F S+ +G + Y S +
Sbjct: 387 LISSAGGQLFYSRPVVSANGEPTVKLYTSVEN 418
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 28.6 bits (64), Expect = 0.60
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 121 GAVVNALDFGSGGWWF-KSKSGHKNYRGYISAS 152
G + L+ GWW+ + G K ++G++ ++
Sbjct: 31 GVSMEVLERNPNGWWYCQILDGVKPFKGWVPSN 63
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 30.8 bits (69), Expect = 0.61
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 168 EEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEK----ELRD 223
+ KE+++D + + + E + A A+++E + +
Sbjct: 260 YRLHQKAKELNLDITYKELSGTERHTKTPELAHLEAQYEARPAIPYAEKQEALTVMQAAN 319
Query: 224 AFREVEDIADEVSDCVRNTG-ELREFIVL-REIDSGGRLVVVRFDRF 268
E+E IA E+ VR G ++ +L R+ + +V F +
Sbjct: 320 RRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADY 366
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 29.6 bits (66), Expect = 0.62
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 60 EFKEAFRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
E + F +D+DGD +T+ E ++ L E+E + + +
Sbjct: 81 EIEAIFTKYDQDGDQELTEHEHQQMRDDL-----EKEREDLDLDHS 121
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide
bonds, hormone-growth factor comple; 1.30A {Homo
sapiens} SCOP: b.42.1.1
Length = 162
Score = 30.0 bits (67), Expect = 0.65
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 103 EVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
V I G + Y M G + L + F+ + Y Y S
Sbjct: 55 TVAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFEEEIRPDGYNVYRSE 103
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold,
signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1
Length = 194
Score = 30.1 bits (67), Expect = 0.74
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 101 LEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
L V I G + Y M G + L + F+ + Y Y S
Sbjct: 65 LRTVAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFEEEIRPDGYNVYRSE 115
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 29.6 bits (66), Expect = 0.87
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
+ D D DG I EE +R ++ L D
Sbjct: 21 HKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHRED 61
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 29.8 bits (67), Expect = 1.2
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 18/66 (27%)
Query: 166 SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRDAF 225
E++I +++ + G ID +V N A + T D K
Sbjct: 112 DEQQISAAVEKA-IKKFGGIDI-------------LVNNASAISLTNTLDTPTKR----L 153
Query: 226 REVEDI 231
+ ++
Sbjct: 154 DLMMNV 159
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 28.9 bits (65), Expect = 1.6
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 36/142 (25%)
Query: 165 LSEEEIEDMIKEVDVDGDGRI-DFN-GDGYFSFE--EFVEIVY------NMGATTEEK-- 212
+S E E+ + + G I D+ G+G++ EF +Y +EK
Sbjct: 1 MSLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD 60
Query: 213 --TADQEEKELRD----------AFREVEDIADEVSDCVRNTGELREFIVLREIDSGGRL 260
+ KE+ D +F +++D +S+ R +L+ GR+
Sbjct: 61 SVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKR---------ILK---DDGRV 108
Query: 261 VVVRFDRFVFRFGRFVVFRLGK 282
+++ + + G + R+ +
Sbjct: 109 IIIDWRKENTGIGPPLSIRMDE 130
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
G I+++DL + + + + +D DVD +G I+
Sbjct: 11 GTINSTDLTMLKRSVLR--AITLTDDAKARADVDKNGSIN 48
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex,
structural protein; 2.22A {Homo sapiens} PDB: 3unp_A
4dxr_A* 4dxs_A*
Length = 198
Score = 28.5 bits (63), Expect = 2.4
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 162 GEDLSEEEIEDMIKEV----DVDGDGRIDF 187
G ++EE++ ++K+ D G D+
Sbjct: 1 GPGVTEEQVHHIVKQALQRYSEDRIGLADY 30
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 28.7 bits (64), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 142 HKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
N G ++++DL + + + + +S K DV+ DGR++
Sbjct: 575 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVN 619
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling
protein; HET: SCR; 1.50A {Homo sapiens}
Length = 155
Score = 27.7 bits (61), Expect = 3.2
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 101 LEEVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
V I G + Y M+ G + + F F+ ++ Y Y S
Sbjct: 56 AGFVVITGVMSRRYLCMDFRGNIFGSHYFDPENCRFQHQTLENGYDVYHSP 106
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 28.3 bits (64), Expect = 3.2
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 154 LRAVLQCLGEDL-------SEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNM- 205
L+A + L + +E +I+ + ++D+ +D +E++ Y +
Sbjct: 30 LQAAAKILERGIADIVLVGNEADIKALAGDLDLSKAKIVDPKTYEK--KDEYINAFYELR 87
Query: 206 ---GATTEE 211
G T E
Sbjct: 88 KHKGITLEN 96
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold,
immunoglobulin fold, hormone/growth factor/transferase
complex; 2.28A {Homo sapiens} SCOP: b.42.1.1
Length = 164
Score = 27.8 bits (61), Expect = 3.5
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 103 EVDINGKKAGNYSIMNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISA 151
V + G + G Y MN G ++ + F NY +A
Sbjct: 74 RVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNA 122
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 28.4 bits (64), Expect = 3.5
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 79 EELGRVMRSLGQFAREEELQQMLEEVDINGKKAGNYSIM 117
E V + + E+ + + +Y M
Sbjct: 227 SEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSM 265
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR
genomics, joint center for structural genomics, JCSG;
HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Length = 138
Score = 27.5 bits (61), Expect = 3.9
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 163 EDLSEEEIEDMIKEVDVDGDGRIDFNGDGY 192
L+E+E + ++ V + GR+
Sbjct: 7 NILNEQEALERLQSVSL---GRVVVRRSDE 33
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA,
national project on protein structural and functional
analyses; 1.90A {Thermus thermophilus}
Length = 145
Score = 27.3 bits (60), Expect = 4.1
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 154 LRAVLQCLGEDLSEEEIEDM-------IKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMG 206
LRAVL L + L+ EE+ + ++ + +G E F+ V
Sbjct: 39 LRAVLHALRDRLTVEEVAQLAAQLPMLVRGLYYEGWDPTGKPLK-ERHKEAFLAHVAEEL 97
Query: 207 ATTEEKTADQEEKELRDAFREVEDIADE 234
T D E R F+ + +
Sbjct: 98 KTPSGPAVD-PEAATRAVFKVLSREISQ 124
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 27.8 bits (63), Expect = 4.4
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 148 YISASDLRAVLQCLGE--DLSEEEIEDMIKEVDVDGDGRID 186
+ + L + DL +++ + ++K ++ G +
Sbjct: 33 SRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRA-LEALGGLH 72
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural
genomics, PSI-2, protein structure initiative; HET: PGE;
1.86A {Staphylococcus aureus subsp}
Length = 282
Score = 27.6 bits (61), Expect = 5.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 153 DLRAVLQCLGEDLSEEEIEDMIKEVDVDG 181
+L+ + L +S E++ + E D G
Sbjct: 236 ELKTTINKLTGKISTSEMQRLNYEADGKG 264
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 27.6 bits (62), Expect = 5.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 67 LFDKDGDGSITKEELGRVM 85
+DKD +G + L VM
Sbjct: 205 QYDKDANGKVEMTRLMGVM 223
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 27.3 bits (61), Expect = 5.9
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 12/66 (18%)
Query: 201 IVYNMGATTEEKTADQEEKELRDAFREVEDIADEV----------SDCVRNTGELREFIV 250
I ++ ++ + RD +E ++A + + + +
Sbjct: 125 IQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYA- 183
Query: 251 LREIDS 256
+++
Sbjct: 184 -HYLNN 188
>3r6u_A Choline-binding protein; substrate binding protein,
ABC-transporter, extracellular, transport protein; 1.61A
{Bacillus subtilis} PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A
3ppr_A*
Length = 284
Score = 27.6 bits (61), Expect = 6.0
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 153 DLRAVLQCLGEDLSEEEIEDMIKEVDVDG 181
+L +++ + + ++++ EVD +
Sbjct: 237 ELEGIIKKMLGKIDTATMQELNYEVDGNL 265
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 27.2 bits (61), Expect = 7.0
Identities = 5/12 (41%), Positives = 11/12 (91%)
Query: 165 LSEEEIEDMIKE 176
L+E+EI+ M+++
Sbjct: 119 LNEDEIQKMVRD 130
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone,
chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB:
1xjh_A
Length = 292
Score = 27.2 bits (61), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 165 LSEEEIEDMIKEVDVDGDGRI----DFNGDGY-FSFEEFVEI 201
L +EE++ ++ E DG I D+ G+ Y F+ + EI
Sbjct: 244 LPDEEVDSILAE-----DGEIDMHCDYCGNHYLFNAMDIAEI 280
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 27.1 bits (61), Expect = 7.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 67 LFDKDGDGSITKEELGRVM 85
+DK DGSI + L V+
Sbjct: 193 QYDKLQDGSIKMKPLMGVI 211
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes,
cation-PI interactions, classical hydrogen bonds,
protein binding; 1.80A {Archaeoglobus fulgidus} SCOP:
c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Length = 275
Score = 27.1 bits (60), Expect = 7.4
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 153 DLRAVLQCLGEDLSEEEIEDMIKEVDVDG 181
L +VL+ L + + + + + + DV+
Sbjct: 229 KLISVLKLLEDRIDTDTMRALNYQYDVEK 257
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 27.6 bits (60), Expect = 7.7
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 164 DLSEEEIEDMIKEVDVDGDGRIDFNGDGYFSFEEFVEIVYNMGATTEEKTADQEEKELRD 223
DL+E+E+++ IK++ D + +E V+I + E + +
Sbjct: 21 DLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNET 80
Query: 224 AFREVEDIADEVSDCVRNTGELREFIVLRE 253
+ E+ + + T E +F+ R
Sbjct: 81 DHKTNENGETDDNIETVMTQE--QFVKRRR 108
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 27.1 bits (61), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 243 GELREFI--VLREIDSGGRLVVVRF----DRFVFRF 272
E+ + + L + GGRL ++ F DR V RF
Sbjct: 251 EEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRF 286
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 26.6 bits (58), Expect = 8.2
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 65 FRLFDKDGDGSITKEELGRVMRSLGQFAREEELQQMLEEVD 105
+L D D +G + EE +R + D
Sbjct: 21 HKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGED 61
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 27.4 bits (61), Expect = 8.3
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 45/126 (35%)
Query: 70 KDGDGSITKEELGRVMRSLG-QFAREEELQQMLEEVDINGKKAGNYSIMNHCGAVVNALD 128
+D D IT EL ++++ FA+ E+ E D G YS GA
Sbjct: 373 RDIDAVITTRELAKMIKDAKIPFAKLED-----SEAD---PAMGEYS-----GA---GAI 416
Query: 129 FGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIE----------DMIKEVD 178
FG+ G G + A L+ + E+E + IKE +
Sbjct: 417 FGATG-------------GV-----MEAALRSAKDFAENAELEDIEYKQVRGLNGIKEAE 458
Query: 179 VDGDGR 184
V+ +
Sbjct: 459 VEINNN 464
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 26.8 bits (60), Expect = 8.4
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 165 LSEEEIEDMIKE 176
LS+++IE+M+K
Sbjct: 138 LSKDDIENMVKN 149
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function,
PSI, protein structure initiative, midwest center for
structural genomics; 1.71A {Bacillus subtilis} SCOP:
b.34.15.1
Length = 128
Score = 26.1 bits (57), Expect = 9.2
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 117 MNHCGAVVNALDFGSGGWWFKSKSGHKNYRGYISASDLRAVLQCLGEDLSEEEIEDMIKE 176
M+H + +D G+ +F+S + K Y + +L + L E + E +I E
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMEKRYSQM-TPHELNTEIALLSEKARKAEQHGIINE 59
Query: 177 VDV 179
+ V
Sbjct: 60 LAV 62
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 25.0 bits (55), Expect = 9.4
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 147 GYISASDLRAVLQCLGEDLSEEEIEDMIKEVDVDGDGRID 186
G I+ +D+ + Q G+ + + ++ D++ DG I+
Sbjct: 13 GVINMADVMILAQSFGKAIGNPGVN---EKADLNNDGVIN 49
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 26.8 bits (60), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 165 LSEEEIEDMIKE 176
L++ EI MIK+
Sbjct: 116 LTDSEIASMIKD 127
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses,
GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus
kaustophilus}
Length = 101
Score = 25.7 bits (57), Expect = 9.9
Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 165 LSEEEIEDMIKEVD---VDGDGRIDFNGDGYFSFEEFVE 200
L+EEE++ ++++ D + + I + F+++++
Sbjct: 3 LTEEEVQALLEKADGWKLADERWIVKK----YRFQDYLQ 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.411
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,531,882
Number of extensions: 371028
Number of successful extensions: 3257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2375
Number of HSP's successfully gapped: 802
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)