BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9154
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
A + N+ TYKL KSA+TIQFFQK+FV DYDPTIEDSYL+HTE+D+ ILD
Sbjct: 5 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILD 64
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
VLDTAGQEEFSAMREQYMR GDGFL+VYSVTD+ S+E++ F+ ILRVKD+
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 116
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/112 (66%), Positives = 89/112 (79%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
A + N+ TYKL KSA+TIQFFQK+FV DYDPTIEDSYL+HTE+D+ ILD
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILD 69
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
VLDTAGQEEFSAMREQYMR GDGFL+VYSVTD+ S+E++ F+ ILRVKD+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/112 (66%), Positives = 89/112 (79%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
A + N+ TYKL KSA+TIQFFQK+FV +YDPTIEDSYL+HTE+D+ ILD
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILD 69
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
VLDTAGQEEFSAMREQYMR GDGFL+VYSVTD+ S+E++ F+ ILRVKD+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 153 bits (386), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 88/112 (78%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
A + N+ TYKL KSA+TIQFFQK+FV +YDPTIEDSY +HTE+D+ ILD
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILD 69
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
VLDTAGQEEFSAMREQYMR GDGFL+VYSVTD+ S+E++ F+ ILRVKD+
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 75/103 (72%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
Y+L KSA+TIQF Q FVTDYDPTIEDSY + +DD LD+LDTAGQEE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
F AMREQYMR G+GFLLV+SVTD+ S+E I F QILRVKD+
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR 108
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%)
Query: 12 TYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE 71
T+KL KSA+TIQF Q FV+DYDPTIEDSY + VD + LD+LDTAGQE
Sbjct: 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
EF AMREQYMR G GFLLV+++ D+QS+ + +TQILRVKD+
Sbjct: 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR 112
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 1 GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
GQEE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 1 GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
GQEE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 1 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
GQEE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 74/104 (71%)
Query: 11 TTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAGQ
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 106
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 77/111 (69%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
P +++T YKL KSA+TIQ Q FV +YDP+IEDSY + +D C+LD
Sbjct: 1 GPLGSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLD 60
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+LDTAGQEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 111
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 76/111 (68%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
+ ++T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD
Sbjct: 2 GGSGGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 61
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+LDTAGQEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 62 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 112
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 74/106 (69%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 77
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
G EE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 78 GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD 123
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
++T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDT
Sbjct: 4 GSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDT 63
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AGQEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 64 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
++T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDT
Sbjct: 4 GSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDT 63
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AGQEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 64 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 75/105 (71%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D +C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDP+IEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR++YMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDT G
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL K+A+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV ++DPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 KEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIE+SY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDT G
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 74/107 (69%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
++T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDT
Sbjct: 4 GSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDT 63
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AG EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 64 AGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 110
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 73/106 (68%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTA
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 77
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
GQEE+SAMR+QYMR G+GFL V+++ + +S+ +I + QI RVKD
Sbjct: 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 73/107 (68%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
++ YKL KSA+T+QF Q +FV YDPTIEDSY + EVD C+L++LDT
Sbjct: 1 GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDT 60
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AG E+F+AMR+ YM+ G GF LVYS+T Q ++ +++ QILRVKD
Sbjct: 61 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 107
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV + DPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 71/102 (69%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
YKL KSA+T+QF Q +FV YDPTIEDSY + EVD C+L++LDTAG E+
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
F+AMR+ YM+ G GF LVYS+T Q ++ +++ QILRVKD
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
YKL KSA+T+QF Q +FV +YDPTIEDSY + EVD C+L++LDTAG E+
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
F+AMR+ YM+ G GF LVYS+T Q ++ +++ QILRVKD
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 VEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 73/105 (69%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 IEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 71/102 (69%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
YKL KSA+T+QF Q +FV YDPTIEDSY + EVD C+L++LDTAG E+
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
F+AMR+ YM+ G GF LVYS+T Q ++ +++ QILRVKD
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 72/105 (68%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKL KSA+TIQ Q FV +YDPTIEDSY + +D +LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
EE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
YK+ KSA+T+QF F+ YDPTIED Y + EVD +L++LDTAG E+
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
F++MR+ Y++ G GF+LVYS+ +QQS+++IK QI+RVK
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK 104
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 69/112 (61%)
Query: 3 KAPNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCIL 62
K N++ +K+ KSA+T+QF FV DY+PT DSY + +D +
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
Query: 63 DVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
D+LDTAGQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 116
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
N++ +K+ KSA+T+QF FV DY+PT DSY + +D +D+LDT
Sbjct: 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 73
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AGQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 74 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 120
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
N++ +K+ KSA+T+QF FV DY+PT DSY + +D +D+LDT
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AGQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 62 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%)
Query: 6 NNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVL 65
+++ +K+ KSA+T+QF FV DY+PT DSY + +D +D+L
Sbjct: 1 GQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
DTAG E+++A+R+ Y R G+GFLLV+S+T+ +S+ F QILRVK
Sbjct: 61 DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK 108
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
++ +K+ KSA+T+QF FV DY+PT DSY + +D +D+LDTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
GQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 106
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
N++ +K+ KSA+T+QF FV DY+PT DSY + +D +D+LDT
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
AG E+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 62 AGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE 108
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 61/89 (68%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KSA+T+QF FV DY+PT DSY + +D +D+LDTAG E+++A+R+ Y R G
Sbjct: 16 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 75
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113
+GFLLV+S+T+ +S+ F QILRVK
Sbjct: 76 EGFLLVFSITEHESFTATAEFREQILRVK 104
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 14 KLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
KL KSA+ ++F K F+ +YDPT+E +Y +DD + +++LDTAGQE+
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED- 88
Query: 74 SAMREQYMRKGDGFLLVYSVTDQQSYENI 102
+ RE +MR G+GF+LVY +TD+ S+E +
Sbjct: 89 TIQREGHMRWGEGFVLVYDITDRGSFEEV 117
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 56/101 (55%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
Y++ KS++ ++F + F Y PT+ED+Y Q D +C L + DT G +
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
F AM+ + KG F+LVYS+T +QS E +K Y QI +K
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 104
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KS++ ++F + F Y PTIED+Y Q D +C L + DT G +F AM+ + KG
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113
F+LV+SVT +QS E + Y I+++K
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIK 109
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KS++TIQF + FV YDPTIE+++ + V+ L ++DTAGQ+E+S + Y
Sbjct: 14 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 73
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQIL 110
+G++LVYSVT +S+E IK + ++L
Sbjct: 74 NGYILVYSVTSIKSFEVIKVIHGKLL 99
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KS++TIQF + FV YDPTIE+++ + V+ L ++DTAGQ+E+S + Y
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQIL 110
+G++LVYSVT +S+E IK + ++L
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLL 104
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KS++TIQF + FV YDPTIE+++ + V+ L ++DTAGQ+E+S + Y
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQIL 110
+G++LVYSVT +S+E IK + ++L
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLL 104
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
KS++TIQF + FV DPTIE+++ + V+ L ++DTAGQ+E+S + Y
Sbjct: 17 KSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 76
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQIL 110
+G++LVYSVT +S+E IK + ++L
Sbjct: 77 NGYILVYSVTSIKSFEVIKVIHGKLL 102
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTA 68
+T+ KL KS+I ++F F + +PTI ++L Q +++ ++ DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
GQE F+++ Y R L+VY VT QS+ +H+ ++
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL 101
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F TDY PT+ D++ + VD + L + DTAGQE++S +R R
Sbjct: 22 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D F+L +S+ + SYEN+ + LR
Sbjct: 82 DIFVLAFSLISKASYENVLKKWMPELR 108
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F TDY PT+ D++ + VD L + DTAGQE+++ +R R
Sbjct: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D F+L +S+ + SYEN+ + LR
Sbjct: 79 DVFILAFSLISKASYENVAKKWIPELR 105
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F TDY PT+ D++ + VD L + DTAGQE+++ +R R
Sbjct: 19 KTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 85 DGFLLVYSVTDQQSYENI 102
D FLL +S+ + SYENI
Sbjct: 79 DVFLLAFSLISKASYENI 96
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+SY N+K + +I R
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDR 109
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+SY N+K + +I R
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDR 109
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + DY TI D ++ E+D L + DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ +K + +I R
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F TDY PT+ D++ + V+ L + DTAGQE+++ +R R
Sbjct: 21 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D F+L +S+ + SYEN+ + L+
Sbjct: 81 DVFILAFSLISKASYENVSKKWIPELK 107
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + DY TI D ++ E+D L + DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ +K + +I R
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + DY TI D ++ E+D L + DTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ +K + +I R
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 121
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 125
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 106
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 106
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 108
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + Y TI D ++ E+D L + DTAGQE F + Y R
Sbjct: 12 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 71
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQILR 111
G ++VY VTDQ+S+ N+K + +I R
Sbjct: 72 AHGIIVVYDVTDQESFNNVKQWLQEIDR 99
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + Y TI D ++ E+D L + DTAGQE F + Y R
Sbjct: 11 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 70
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQILR 111
G ++VY VTDQ+S+ N+K + +I R
Sbjct: 71 AHGIIVVYDVTDQESFNNVKQWLQEIDR 98
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL K+ + ++F + Y TI D ++ E+D L + DTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTDQ+S+ N+K + +I R
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQH-TEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS++ ++ + +F DY TI +L+ +V+D L + DTAGQEEF A+ + Y R
Sbjct: 18 KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG 77
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110
+LV+S TD++S+E I + +++
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVV 104
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+++ QF + F YDPT+E++Y + + L ++DTAGQ+E+S + ++
Sbjct: 37 KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQI 109
G++LVYSVT S++ I+ Y ++
Sbjct: 97 HGYVLVYSVTSLHSFQVIESLYQKL 121
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 12 TYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQ 70
YK+ KS+ ++ + F + T+ D ++ VD +L + DTAGQ
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
E F ++ + Y RK DG LL+Y VT ++S+ NI+ + I
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR 107
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 107
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
YKL K++I +F F +Y TI +L T +D+ L + DTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
F ++ Y+R ++VY +T++QS+EN + IL + K
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK 105
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N I +KL KS++ ++F + F + TI ++L T +DD ++
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS + ++F + Y TI D ++ +++ L + DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
F + Y R G ++VY VTD+ S++N+K + +I R
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDR 109
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL K+ + +F + F + + TI D ++ E+D L + DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G +LVY +T+++S++NI+++ I
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 106
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL K+ + +F + F + + TI D ++ E+D L + DTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G +LVY +T+++S++NI+++ I
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 104
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + F + TI D ++ +++ L + DTAGQE F + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G +LVY +TD++++ NIK ++ +
Sbjct: 76 AXGIILVYDITDERTFTNIKQWFKTV 101
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + F + TI D ++ +++ L + DTAGQE F + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 75
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G +LVY VTD++++ NIK ++ +
Sbjct: 76 AXGIILVYDVTDERTFTNIKQWFKTV 101
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 5 PNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILD 63
P + ++K+ K+++ +++ + F + T++ S+L + + L
Sbjct: 13 PRGSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLA 72
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+ DTAGQE F A+ Y R +G +LVY +TD+ S++ +K++ ++ ++
Sbjct: 73 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 121
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 22 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 81
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D FL+ +S+ SYEN++ + +R
Sbjct: 82 DVFLICFSLVSPASYENVRAKWFPEVR 108
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +S+ SYEN++ +
Sbjct: 76 DVFLICFSLVSPASYENVRAKW 97
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCIL 62
A N KL KS++ ++F + FV + TI ++ T V+D
Sbjct: 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKF 63
Query: 63 DVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
++ DTAGQE + ++ Y R ++V+ VT+Q S+E K + ++
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL 110
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 23 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D FL+ +S+ SYEN++ + +R
Sbjct: 83 DVFLICFSLVSPASYENVRAKWFPEVR 109
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMR--EQYMR 82
KSA+T++F K F+++YDP +ED+Y VD L V+DTA + R E+Y+
Sbjct: 34 KSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA---DLDTPRNCERYLN 90
Query: 83 KGDGFLLVYSV 93
FL+VYSV
Sbjct: 91 WAHAFLVVYSV 101
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + F + TI D ++ +++ L + DTAGQE F + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G +LVY +TD++++ NIK ++ +
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTV 101
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + F + TI D ++ +++ L + DTAGQE F + Y R
Sbjct: 33 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G +LVY VTD++++ NIK ++ +
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTV 118
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + ++F + F + TI D ++ +++ L + DTAGQE F + Y R
Sbjct: 20 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 79
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G +LVY VTD++++ NIK ++ +
Sbjct: 80 AMGIILVYDVTDERTFTNIKQWFKTV 105
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 54 EVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
EVD L + DTAGQE F ++R + R D LL +SV D+QS+EN+ ++ + +
Sbjct: 50 EVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYA 109
Query: 114 D 114
D
Sbjct: 110 D 110
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEV 128
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 35 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 94
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 95 DVFLICFSLVSPASFENVRAKWYPEV 120
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 77 DVFLICFSLVSPASFENVRAKWYPEV 102
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 77 DVFLICFSLVSPASFENVRAKWYPEV 102
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 23 KNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 83 DVFLICFSLVSPASFENVRAKWYPEV 108
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 26 KTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 85
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 86 DVFLICFSLVSPASFENVRAKWYPEV 111
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL KS++ ++F F Y TI D ++ E++ L + DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G ++VY VT +S+ N+K + +I
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLD 66
+ I +KL KS++ ++F + F + TI ++L Q +DD ++ D
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
TAGQE + ++ Y R ++VY +T+Q+++ K + ++ R
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR 108
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLD 66
N I +KL KS++ ++F + F + TI ++L T +DD ++ D
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
TAG E + ++ Y R ++VY +T+++S+ K++ ++ R
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 105
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F D TI + T E++ + DTAGQE + A+ Y R
Sbjct: 26 KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG 85
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
G L+VY ++ SYEN H+ +++ D
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELRENAD 116
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 12 TYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQ 70
++K+ K+++ +++ + F + T++ S+L + + L + DTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
E F A+ Y R +G +LVY +TD+ S++ +K++ ++ ++
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+++ + + + T+Y PT D++ VD L + DTAGQ+EF +R
Sbjct: 33 KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILRV 112
D FLL +SV S++N+ + +R
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRC 120
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + QF +K F+ D TI + EV L + DTAGQE F A+ Y R
Sbjct: 28 KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87
Query: 84 GDGFLLVYSVTDQQSYENIKHFYT 107
G L+VY +T + +Y ++ + T
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLT 111
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%)
Query: 6 NNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVL 65
++ + T K K+ + I + F ++Y PT+ D+Y + L +
Sbjct: 4 GSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 63
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
DTAGQE++ +R + D FL+ +SV S+EN+K +
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 104
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 25 KSAITIQFFQKLFVTDYDPTIE-DSYLQH-TEVDDVMCILDVLDTAGQEEFSAMREQYMR 82
K+++T F Q+ F Y TI D +L+ T ++ L + D GQ M ++Y+
Sbjct: 19 KTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIY 78
Query: 83 KGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
G LLVY +T+ QS+EN++ +YT + +V ++
Sbjct: 79 GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE 111
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 23 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 82
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 83 DVFLVCFSVVSPSSFENVKEKW 104
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLD 66
+++ T K K+ + I + F ++Y PT+ D+Y + L + D
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 60
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
TAGQE++ +R + D FL+ +SV S+EN+K +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 100
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 26 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 85
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 86 DVFLVCFSVVSPSSFENVKEKW 107
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 78 DVFLVCFSVVSPSSFENVKEKW 99
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 19 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 78
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 79 DVFLVCFSVVSPSSFENVKEKW 100
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 17 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 76
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 77 DVFLVCFSVVSPSSFENVKEKW 98
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 20 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 79
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 80 DVFLVCFSVVSPSSFENVKEKW 101
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 78 DVFLVCFSVVSPSSFENVKEKW 99
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 43 KTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEV 128
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS++ ++ F T TI +L + EVD + + DTAGQE F ++R + R
Sbjct: 22 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 81
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
D LL +SV D QS++N+ ++ + + D
Sbjct: 82 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 47 DSYLQHT----------EVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96
DS L HT EVD + + DTAGQE F ++R + R D LL +SV D
Sbjct: 37 DSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS 96
Query: 97 QSYENIKHFYTQILRVKD 114
QS++N+ ++ + + D
Sbjct: 97 QSFQNLSNWKKEFIYYAD 114
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 54 EVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+VD V L + DTAGQE F ++ Y R LL+Y VT++ S++NI+ + T+I
Sbjct: 54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLD 66
+I +KL KS++ ++F + F + TI+ ++L T +DD ++ D
Sbjct: 1 GSICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWD 60
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
TAGQE + ++ Y R ++VY +T+ ++ K++ ++ R
Sbjct: 61 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 105
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 5 PNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILD 63
P + I K+ KS+I +F Q F + PTI S++ T + +
Sbjct: 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFL 75
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAGQE F ++ Y R ++VY +T Q S+ +K + ++
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS++ ++ F T TI +L + EVD + + DTAGQE F ++R + R
Sbjct: 20 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 79
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
D LL +SV D QS++N+ ++ + + D
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEV 101
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 12 TYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQ 70
++K+ K+++ +++ + F + T+ S+L + + L + DTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
E F A+ Y R +G +LVY +TD+ S++ +K++ ++ ++
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 19 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 78
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 79 DVFLICFSLVSPASFENVRAKWYPEV 104
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+EN++ +Y ++
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEV 128
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS+I +F + F + +PTI S++ T + + + + DTAGQE F A+ Y R
Sbjct: 18 KSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRG 77
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
++VY +T ++++ +K++ ++
Sbjct: 78 SAAAIIVYDITKEETFSTLKNWVREL 103
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 1 MAKAPNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVM 59
MA AP N + +K KS + QF +K F+ D TI + + EV
Sbjct: 20 MATAPYNYSYI-FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 78
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107
L + DTAGQ F A+ Y R G L+VY +T + +Y ++ + T
Sbjct: 79 IKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLT 126
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D L+ +S+ S+EN++ +Y ++
Sbjct: 78 DVSLICFSLVSPASFENVRAKWYPEV 103
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 41 YDPTIEDSYL-QHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98
Y TI +L + VD D + + V DTAGQE F ++ + R D +LVY VT+ S
Sbjct: 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 99 YENIKHFYTQIL 110
+ENIK + + L
Sbjct: 97 FENIKSWRDEFL 108
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D L+ +S+ S+EN++ +Y ++
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEV 101
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 20 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 79
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D L+ +S+ S+EN++ +Y ++
Sbjct: 80 DVSLICFSLVSPASFENVRAKWYPEV 105
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D L+ +S+ S+EN++ +Y ++
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEV 101
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + + + F +Y PT+ D Y V +L + DTAGQE++ +R
Sbjct: 31 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 90
Query: 85 DGFLLVYSVTDQQSYENIKHFYTQILR 111
D FL+ +SV + S++N+K + L+
Sbjct: 91 DVFLICFSVVNPASFQNVKEEWVPELK 117
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y P + D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTA 68
I +KL KS++ ++F + F + TI ++L T +DD ++ DTA
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
GQE + ++ Y R ++VY +T+ ++ K++ ++ R
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 103
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE F ++ + R GFLL++ +T QQS+ N++++ +Q+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%)
Query: 4 APNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
P + KL K+ + I F + F Y PT+ ++Y+ EVD L
Sbjct: 1 GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELA 60
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107
+ DTAGQE++ +R D L+ +S+ S ENI +T
Sbjct: 61 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 104
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 9 NITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
I T K K+ + I + F ++Y PT+ D+Y + L + DTA
Sbjct: 4 GIQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
G E++ +R + D FL+ +SV S+EN+K +
Sbjct: 64 GLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 101
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K KS + QF + F D + TI + V L + DTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107
F ++ Y R G LLVY +T +++Y ++ + T
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 121
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + QF +K F D + TI + V L + DTAGQE F ++ Y R
Sbjct: 24 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 83
Query: 84 GDGFLLVYSVTDQQSYENIKHFYT 107
G LLVY +T +++Y + ++ T
Sbjct: 84 AAGALLVYDITSRETYNALTNWLT 107
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + QF +K F D + TI + V L + DTAGQE F ++ Y R
Sbjct: 23 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82
Query: 84 GDGFLLVYSVTDQQSYENIKHFYT 107
G LLVY +T +++Y + ++ T
Sbjct: 83 AAGALLVYDITSRETYNALTNWLT 106
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + ++Y PT+ D+Y + L + DTAGQE++ +R +
Sbjct: 16 KTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWT 101
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWT 101
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +QF K F +D TI + + +D L + DTAGQE F ++ Y R
Sbjct: 34 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93
Query: 84 GDGFLLVYSVTDQQSYENIKHF 105
G LLVY +T ++++ ++ +
Sbjct: 94 AAGALLVYDITRRETFNHLTSW 115
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
K+++ Q+ K F Y TI +L + VDD + + + DTAGQE F ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110
D +LV+ VT +++ + + + L
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFL 107
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
K+++ Q+ K F Y TI +L + VDD + + + DTAGQE F ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110
D +LV+ VT +++ + + + L
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFL 107
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWT 102
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWT 120
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
K+++ Q+ K F Y TI +L + VDD + + + DTAGQE F ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110
D +LV+ VT +++ + + + L
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFL 107
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWT 120
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWT 102
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+K+ K+ + +F Q LF TI D ++ E++ L + DTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ + Y R + +L Y +T ++S+ + + +I
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 21 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 80
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWT 103
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWT 102
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ R
Sbjct: 18 KTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F ++Y PT+ D+Y + L + DTAG E++ +R +
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFY 106
D FL+ +SV S+EN+K +
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKW 97
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 10 ITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTA 68
+TT K+ KS++ ++F F + TI D ++ VD L + DTA
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
GQE F + Y R G +LVY VT + ++ + ++ ++
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 113
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 38 KTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 85 DGFLLVYSVTDQQSYENI--------KHFYTQI 109
D L+ +SV S ENI KHF +
Sbjct: 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNV 130
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F F + TI + T EV++ + DTAG E + A+ Y R
Sbjct: 23 KSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRG 82
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G L+VY ++ SYEN H+ T++
Sbjct: 83 AVGALIVYDISKSSSYENCNHWLTEL 108
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS+I +F + F + +PTI S++ T + + + + DTAG E F A+ Y R
Sbjct: 19 KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG 78
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
++VY +T ++++ +K++ ++
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVREL 104
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 1 MAKAPNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
MA + + K+ K+++ + F F Y PT+ + Y+ + +V
Sbjct: 23 MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPV 82
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENI-KHFYTQI 109
L + DTAGQ+++ +R + LL + VT S++NI +Y ++
Sbjct: 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLD 66
+I +KL KS++ ++F + F + TI ++L T +DD ++ D
Sbjct: 1 GSICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
TAG E + ++ Y R ++VY +T+ ++ K++ ++ R
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 105
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +QF K F +D TI + + +D L + DTAGQE F ++ Y R
Sbjct: 23 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG 82
Query: 84 GDGFLLVYSVTDQQSYENI 102
G LLVY +T + ++ ++
Sbjct: 83 AAGALLVYDITRRDTFNHL 101
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAGQE + A+ Y R G LLVY +T + S+ENI+ + ++
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKEL 106
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE + + Y R GFLL+Y + +Q+S+ ++ + TQI
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL + +T QQS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL 119
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL + +T QQS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL 119
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL++ +T QQS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 119
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE + + Y R GF+L+Y +T+++S+ ++ + TQI
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 103
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL++ +T QQS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 119
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE + + Y R GF+L+Y +T+++S+ ++ + TQI
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + QF +K F D + TI + V L + DTAG E F ++ Y R
Sbjct: 21 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYT 107
G LLVY +T +++Y + ++ T
Sbjct: 81 AAGALLVYDITSRETYNALTNWLT 104
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYL-QHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
K+++ Q+ K F Y TI +L + VDD + + + DTAG E F ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110
D +LV+ VT +++ + + + L
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFL 107
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+ +++ +Y ++
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEV 253
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+ +++ +Y ++
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEV 253
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F +Y PT+ D+Y + VD L + DTAG E++ +R +
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 85 DGFLLVYSVTDQQSYENIK-HFYTQI 109
D FL+ +S+ S+ +++ +Y ++
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEV 253
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71
+KL K+ + +F F TI D ++ E+ L + DTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
F + + Y R +G +L Y +T + S+ ++ H+
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 16 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWT 98
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL++ +T++QS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 16 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWT 98
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAGQE + A+ Y R
Sbjct: 33 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 92
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 93 AVGALLVYDIAKHLTYENVERWLKEL 118
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAGQE++ +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWT 100
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAGQE + A+ Y R
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 101
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKEL 127
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMR------- 77
K+ + I + F +Y PT+ D+Y + VD L + DTAGQE++ +R
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 78 --EQYMRK----------GDGFLLVYSVTDQQSYENIK-HFYTQI 109
E Y + D FL+ +S+ S+EN++ +Y ++
Sbjct: 78 VGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV 122
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 104
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 39 TDYDPTIEDSYLQHTEVDD---VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
+D + ED+Y + VD + +LD+ + G+ E+ + + M+ GD +L+VYS+TD
Sbjct: 35 SDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITD 92
Query: 96 QQSYENIKHFYTQILRVK 113
+ S+E Q+ R +
Sbjct: 93 RASFEKASELRIQLRRAR 110
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F +R+ Y + ++ + VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE F+++ Y R G +LVY +T +++++++ + I
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 124
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 39 TDYDPTIEDSYLQHTEVDD---VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
+D + ED+Y + VD + +LD+ + G+ E+ + + M+ GD +L+VYS+TD
Sbjct: 66 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 123
Query: 96 QQSYENIKHFYTQILRVK 113
+ S+E Q+ R +
Sbjct: 124 RASFEKASELRIQLRRAR 141
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 39 TDYDPTIEDSYLQHTEVDD---VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
+D + ED+Y + VD + +LD+ + G+ E+ + + M+ GD +L+VYS+TD
Sbjct: 35 SDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 92
Query: 96 QQSYENIKHFYTQILRVK 113
+ S+E Q+ R +
Sbjct: 93 RASFEKASELRIQLRRAR 110
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 39 TDYDPTIEDSYLQHTEVDD---VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
+D + ED+Y + VD + +LD+ + G+ E+ + + M+ GD +L+VYS+TD
Sbjct: 35 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITD 92
Query: 96 QQSYENIKHFYTQILRVK 113
+ S+E Q+ R +
Sbjct: 93 RASFEKASELRIQLRRAR 110
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E + + Y R GF+L Y +T+++S+ ++ + TQI
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQI 106
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + + F + T Y PT+ +++ + + IL + DTAGQEE+ +R
Sbjct: 36 KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95
Query: 85 DGFLLVYSVTDQQSYENI 102
D LL ++V ++ S++NI
Sbjct: 96 DVVLLCFAVNNRTSFDNI 113
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 1 MAKAPNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVM 59
M+ N + +KL K+++ +F F Y TI +L T ++D
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
L + DTAGQE F ++ Y+R ++VY +T+ S+ +
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + + F + T Y PT+ +++ + + IL + DTAGQEE+ +R
Sbjct: 35 KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 94
Query: 85 DGFLLVYSVTDQQSYENI 102
D LL ++V ++ S++NI
Sbjct: 95 DVVLLCFAVNNRTSFDNI 112
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE++ +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
DV DTAG E+F +R+ Y ++++ VT + +Y+N+ +++ ++RV
Sbjct: 63 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 113
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAGQE + + Y R
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKEL 103
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
DV DTAG E+F +R+ Y ++++ VT + +Y+N+ +++ ++RV
Sbjct: 55 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 105
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
DV DTAG E+F +R+ Y ++++ VT + +Y+N+ +++ ++RV
Sbjct: 56 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV 106
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+ + I + F Y PT+ ++Y+ EVD L + DTAG E++ +R
Sbjct: 21 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80
Query: 85 DGFLLVYSVTDQQSYENIKHFYT 107
D L+ +S+ S ENI +T
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWT 103
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAG E + A+ Y R
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKEL 127
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAG E + A+ Y R
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 77
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKEL 103
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+F + + Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAG E + A+ Y R
Sbjct: 21 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 80
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 81 AVGALLVYDIAKHLTYENVERWLKEL 106
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRK 83
KS + +F + F + TI + + +VD + DTAG E + A+ Y R
Sbjct: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 83
Query: 84 GDGFLLVYSVTDQQSYENIKHFYTQI 109
G LLVY + +YEN++ + ++
Sbjct: 84 AVGALLVYDIAKHLTYENVERWLKEL 109
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQE 71
+KL K+++ +F F Y TI +L T ++D L + DTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYE 100
F ++ Y+R ++VY +T+ S++
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQ 95
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAG E+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 57 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 107
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAG E+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 111
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAG E+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 113
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQE 71
+KL K+++ +F F Y TI +L T ++D L + DTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
F ++ Y+R ++VY +T+ S++ +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKW 96
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 13 YKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQE 71
+KL K+++ +F F Y TI +L T ++D L + DTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYE 100
F ++ Y+R ++VY +T+ S++
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQ 90
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 8 NNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
N KL K+ + I + F Y PT+ ++Y+ EVD L + DT
Sbjct: 6 GNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDT 65
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
AGQE++ +R + L+ +S+ S EN++ +
Sbjct: 66 AGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKW 104
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N + +KL K+++ +F F Y TI +L T ++D L +
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
DTAG E F ++ Y+R ++VY +T+ S++ +
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 107
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N + +KL K+++ +F F Y TI +L T ++D L +
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
DTAG E F ++ Y+R ++VY +T+ S++ +
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 110
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 7 NNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTE-VDDVMCILDVL 65
N + +KL K+++ +F F Y TI +L T ++D L +
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYE 100
DTAG E F ++ Y+R ++VY +T+ S++
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 95
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 51 QHTEVDDVMCIL--DVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQ 108
QH ++ +C + D+ DTAGQE ++++ Y R ++V+ +++ + + K + Q
Sbjct: 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQ 141
Query: 109 I 109
+
Sbjct: 142 L 142
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 46 EDSYLQHTEVDDVMCILDVLDTAGQEEFSA-MREQYMRKGDGFLLVYSVTDQQSYENI 102
ED+Y + VD L V D Q + +R+ ++ GD FL+V+SVTD++S+ +
Sbjct: 58 EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV 115
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAG E + A+ Y R G LLV+ +T Q+Y ++ + ++
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 108
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAG E + A+ Y R G LLV+ +T Q+Y ++ + ++
Sbjct: 78 IWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 5 PNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILD 63
P + +K+ K+ +T +F F + TI + + ++D +
Sbjct: 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72
Query: 64 VLDTAGQEEF-SAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
+ DTAGQE F +M + Y R + VY +T+ S+ ++ +
Sbjct: 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 81 MRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
M GD +++VYSVTD+ S+E Q+ R +
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 107
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 46 EDSYLQHTEVDDVMCILDVLDTAGQEEF--SAMREQYMRKGDGFLLVYSVTDQQSYENIK 103
ED Y + VD L V+DT E+ S +E ++ G +++VYS+ D+ S+E+
Sbjct: 38 EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97
Query: 104 HFYTQILR 111
Q+ R
Sbjct: 98 ELRIQLRR 105
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 11 TTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
+ YK+ KSA+ + F + +Y + VD L V D Q
Sbjct: 6 SVYKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
+ + M GD +++VYSVTD+ S+E Q+ R +
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 107
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 11 TTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
+ YK+ KSA+ + F + +Y + VD L V D Q
Sbjct: 1 SVYKVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
+ + M GD +++VYSVTD+ S+E Q+ R +
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 102
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 46 EDSYLQHTEVDDVMCILDVLDTAGQEEFSA-MREQYMRKGDGFLLVYSVTDQQSYENI 102
ED+Y + VD L V D Q + +++ ++ GD FL+V+SVTD++S+ +
Sbjct: 37 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV 94
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 12 TYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCIL--DVLDTAG 69
TYK+ K+ + F +Y+ T+ T +DD ++ +V DTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105
QE+ + +++ Y G +L + VT + + +N+ +
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARW 106
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 5 PNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDV 64
PN N K+ K+A+ F + F +Y PT+ ++Y E+D L +
Sbjct: 23 PNQN--VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENI 102
DT+G + +R D L+ + ++ ++ +++
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 118
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 46 EDSYLQHTEVDDVMCILDVLDTAGQEEFSA-MREQYMRKGDGFLLVYSVTDQQSYENI 102
ED+Y + VD L V D Q + +++ ++ GD FL+V+SVTD++S+ +
Sbjct: 47 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV 104
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 5 PNNNNITTYKLXXXXXXXXXKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDV 64
PN N K+ K+A+ F + F +Y PT+ ++Y E+D L +
Sbjct: 18 PNQN--VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENI 102
DT+G + +R D L+ + ++ ++ +++
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 113
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+A+ F + F +Y PT+ ++Y E+D L + DT+G + +R
Sbjct: 20 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 85 DGFLLVYSVTDQQSYENI 102
D L+ + ++ ++ +++
Sbjct: 80 DAVLICFDISRPETLDSV 97
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEF-SAMREQYMR 82
K+ +T +F F + TI + + ++D + + DTAGQE F +M + Y R
Sbjct: 42 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 101
Query: 83 KGDGFLLVYSVTDQQSYENIKHF 105
+ VY T+ S+ ++ +
Sbjct: 102 NVHAVVFVYDXTNXASFHSLPAW 124
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTD---QQSYENIKH 104
LDT G FSAMR + + D +LV + D +Q+ E+I+H
Sbjct: 57 LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQH 99
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+A+ + + Y PT+ ++Y E ++ L + DT+G + +R
Sbjct: 40 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99
Query: 85 DGFLLVYSVTDQQSYEN-IKHFYTQIL 110
D LL + ++ ++ ++ +K + T+IL
Sbjct: 100 DAVLLCFDISRPETVDSALKKWRTEIL 126
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+A+ + + Y PT+ ++Y E ++ L + DT+G + +R
Sbjct: 24 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 83
Query: 85 DGFLLVYSVTDQQSYEN-IKHFYTQIL 110
D LL + ++ ++ ++ +K + T+IL
Sbjct: 84 DAVLLCFDISRPETVDSALKKWRTEIL 110
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 25 KSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84
K+A+ + + Y PT+ ++Y E ++ L + DT+G + +R
Sbjct: 23 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 82
Query: 85 DGFLLVYSVTDQQSYEN-IKHFYTQIL 110
D LL + ++ ++ ++ +K + T+IL
Sbjct: 83 DAVLLCFDISRPETVDSALKKWRTEIL 109
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 36 LFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
LFV + + S ++ E + CI D G E +++ R+ SVT
Sbjct: 32 LFVHGWGGSQHHSLVRAREAVGLGCICXTFDLRGHEGYASXRQ-------------SVTR 78
Query: 96 QQSYENIKHFYTQI 109
Q+ ++IK Y Q+
Sbjct: 79 AQNLDDIKAAYDQL 92
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 52 HTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD---QQSYENIKH 104
H E ++ M + LDT G F++MR + + D +LV + D Q+ E I+H
Sbjct: 45 HVETENGM--ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQH 98
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTD---QQSYENIKH 104
LDT G E F+ MR + + D +LV + D Q+ E I H
Sbjct: 60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINH 102
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
L +LDTAG + + QY +LV+ V+ +S+E+ K ++
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+ + D GQ F +M E+Y R + + DQ+ E K+
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91
++++DT G +F+ E+ MR DG ++VY
Sbjct: 83 INIIDTPGHVDFTIEVERSMRVLDGAVMVY 112
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91
++++DT G +F+ E+ MR DG ++VY
Sbjct: 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVY 113
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110
+ + D GQ F +M E+Y R + + DQ+ E K+ +L
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL 117
>pdb|2P9J|A Chain A, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|B Chain B, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|C Chain C, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|D Chain D, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|E Chain E, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|F Chain F, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|G Chain G, Crystal Structure Of Aq2171 From Aquifex Aeolicus
pdb|2P9J|H Chain H, Crystal Structure Of Aq2171 From Aquifex Aeolicus
Length = 162
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 35 KLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
KL + D D + D L +TE + + + +VLD G
Sbjct: 10 KLLIXDIDGVLTDGKLYYTEHGETIKVFNVLDGIG 44
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98
+L+V D AG+EEF + + + +L VY ++ Q+
Sbjct: 55 VLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQA 92
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98
+L+V D AG+EEF + + + +L VY ++ Q+
Sbjct: 57 VLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQA 94
>pdb|1F6R|A Chain A, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6R|B Chain B, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6R|C Chain C, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6R|D Chain D, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6R|E Chain E, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6R|F Chain F, Crystal Structure Of Apo-Bovine Alpha-Lactalbumin
pdb|1F6S|A Chain A, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|1F6S|B Chain B, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|1F6S|C Chain C, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|1F6S|D Chain D, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|1F6S|E Chain E, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|1F6S|F Chain F, Crystal Structure Of Bovine Alpha-Lactalbumin
pdb|2G4N|A Chain A, Anomalous Substructure Of Alpha-Lactalbumin
pdb|2G4N|B Chain B, Anomalous Substructure Of Alpha-Lactalbumin
pdb|2G4N|C Chain C, Anomalous Substructure Of Alpha-Lactalbumin
pdb|2G4N|D Chain D, Anomalous Substructure Of Alpha-Lactalbumin
pdb|2G4N|E Chain E, Anomalous Substructure Of Alpha-Lactalbumin
pdb|2G4N|F Chain F, Anomalous Substructure Of Alpha-Lactalbumin
Length = 123
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 47 DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89
D +L DD+MC+ +LD G + A + K D +L
Sbjct: 78 DKFLDDDLTDDIMCVKKILDKVGINYWLAHKALCSEKLDQWLC 120
>pdb|1YFJ|A Chain A, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFJ|B Chain B, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFJ|C Chain C, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFJ|D Chain D, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFJ|E Chain E, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFJ|F Chain F, T4dam In Complex With Adohcy And 15-Mer Oligonucleotide
Showing Semi-Specific And Specific Contact
pdb|1YFL|A Chain A, T4dam In Complex With Sinefungin And 16-Mer
Oligonucleotide Showing Semi-Specific And Specific
Contact And Flipped Base
pdb|1YFL|B Chain B, T4dam In Complex With Sinefungin And 16-Mer
Oligonucleotide Showing Semi-Specific And Specific
Contact And Flipped Base
pdb|1YFL|D Chain D, T4dam In Complex With Sinefungin And 16-Mer
Oligonucleotide Showing Semi-Specific And Specific
Contact And Flipped Base
pdb|1YFL|E Chain E, T4dam In Complex With Sinefungin And 16-Mer
Oligonucleotide Showing Semi-Specific And Specific
Contact And Flipped Base
Length = 259
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 42 DPTIED-SYLQHTEVDDVMCILD--VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98
+P IE L + DDV+ ++ L +EEF +RE Y + D LL
Sbjct: 53 EPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLY-------- 104
Query: 99 YENIKHF--YTQILRVKDK 115
+ HF ++ ++R+ DK
Sbjct: 105 ---VLHFHGFSNMIRINDK 120
>pdb|1Q0S|A Chain A, Binary Structure Of T4dam With Adohcy
pdb|1Q0T|A Chain A, Ternary Structure Of T4dam With Adohcy And Dna
pdb|1Q0T|B Chain B, Ternary Structure Of T4dam With Adohcy And Dna
Length = 259
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 42 DPTIED-SYLQHTEVDDVMCILD--VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98
+P IE L + DDV+ ++ L +EEF +RE Y + D LL
Sbjct: 53 EPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLY-------- 104
Query: 99 YENIKHF--YTQILRVKDK 115
+ HF ++ ++R+ DK
Sbjct: 105 ---VLHFHGFSNMIRINDK 120
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 37 FVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
FVT + +S H E V+ V + DVL A Q+ + + R+ L+ +
Sbjct: 138 FVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 197
Query: 96 QQSYENIKHFY 106
Q S + ++HFY
Sbjct: 198 QTSTKAVQHFY 208
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 37 FVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
FVT + +S H E V+ V + DVL A Q+ + + R+ L+ +
Sbjct: 159 FVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 218
Query: 96 QQSYENIKHFY 106
Q S + ++HFY
Sbjct: 219 QTSTKAVQHFY 229
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 37 FVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
FVT + +S H E V+ V + DVL A Q+ + + R+ L+ +
Sbjct: 159 FVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 218
Query: 96 QQSYENIKHFY 106
Q S + ++HFY
Sbjct: 219 QTSTKAVQHFY 229
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 37 FVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
FVT + +S H E V+ V + DVL A Q+ + + R+ L+ +
Sbjct: 151 FVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 210
Query: 96 QQSYENIKHFY 106
Q S + ++HFY
Sbjct: 211 QTSTKAVQHFY 221
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 37 FVTDYDPTIEDSYLQHTE-VDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
FVT + +S H E V+ V + DVL A Q+ + + R+ L+ +
Sbjct: 135 FVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 194
Query: 96 QQSYENIKHFY 106
Q S + ++HFY
Sbjct: 195 QTSTKAVQHFY 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,064,354
Number of Sequences: 62578
Number of extensions: 105875
Number of successful extensions: 574
Number of sequences better than 100.0: 310
Number of HSP's better than 100.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 310
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)