Query psy9154
Match_columns 115
No_of_seqs 112 out of 1120
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 20:19:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.3E-35 2.9E-40 184.9 12.4 108 7-114 4-112 (205)
2 KOG0092|consensus 100.0 1.4E-33 3.1E-38 175.2 11.4 105 10-114 3-108 (200)
3 KOG0080|consensus 100.0 4.7E-32 1E-36 164.6 13.0 109 7-115 6-115 (209)
4 KOG0094|consensus 100.0 3E-32 6.5E-37 169.8 12.3 107 8-114 18-125 (221)
5 KOG0078|consensus 100.0 2.2E-31 4.7E-36 167.8 14.1 107 8-114 8-115 (207)
6 KOG0079|consensus 100.0 4.7E-32 1E-36 162.7 9.4 107 8-114 4-111 (198)
7 KOG0394|consensus 100.0 1.2E-31 2.7E-36 165.7 8.9 106 9-114 6-112 (210)
8 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.2E-30 9.2E-35 162.8 14.6 105 9-113 2-107 (182)
9 KOG0087|consensus 100.0 1.3E-30 2.7E-35 164.2 11.4 109 6-114 8-117 (222)
10 KOG0095|consensus 100.0 2.6E-30 5.6E-35 155.7 11.4 106 9-114 4-110 (213)
11 KOG0098|consensus 100.0 5.9E-30 1.3E-34 158.6 12.9 105 9-113 3-108 (216)
12 cd04133 Rop_like Rop subfamily 100.0 7.8E-30 1.7E-34 160.8 13.4 101 13-113 2-103 (176)
13 cd04131 Rnd Rnd subfamily. Th 100.0 9E-30 1.9E-34 160.8 13.6 103 12-114 1-104 (178)
14 cd01875 RhoG RhoG subfamily. 100.0 1.6E-29 3.5E-34 161.1 14.6 102 11-112 2-104 (191)
15 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.9E-29 6.3E-34 163.9 15.4 107 7-113 8-115 (232)
16 cd04120 Rab12 Rab12 subfamily. 100.0 5.6E-29 1.2E-33 159.9 14.6 101 13-113 1-102 (202)
17 cd04121 Rab40 Rab40 subfamily. 100.0 1E-28 2.3E-33 157.2 15.2 104 10-113 4-108 (189)
18 KOG0086|consensus 100.0 6.5E-29 1.4E-33 150.1 10.7 108 7-114 4-112 (214)
19 KOG0093|consensus 100.0 8.3E-29 1.8E-33 148.6 11.1 107 7-113 16-123 (193)
20 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.7E-28 5.8E-33 153.6 13.9 102 12-113 1-103 (175)
21 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4E-28 8.6E-33 153.7 14.4 101 13-113 1-102 (182)
22 cd04102 RabL3 RabL3 (Rab-like3 100.0 4E-28 8.6E-33 155.8 14.2 100 13-112 1-106 (202)
23 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.9E-28 8.5E-33 157.8 14.1 102 12-113 1-103 (222)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.3E-27 2.9E-32 150.0 14.5 101 12-112 2-102 (172)
25 cd04136 Rap_like Rap-like subf 100.0 2E-27 4.3E-32 147.3 14.1 102 12-113 1-102 (163)
26 cd04122 Rab14 Rab14 subfamily. 100.0 3E-27 6.4E-32 147.3 14.8 102 12-113 2-104 (166)
27 PLN03071 GTP-binding nuclear p 100.0 3.5E-27 7.5E-32 153.3 15.4 105 9-113 10-115 (219)
28 PTZ00369 Ras-like protein; Pro 100.0 3.8E-27 8.2E-32 149.9 14.7 103 10-112 3-105 (189)
29 cd01871 Rac1_like Rac1-like su 100.0 2.9E-27 6.3E-32 148.8 13.9 101 12-112 1-102 (174)
30 PF00071 Ras: Ras family; Int 100.0 3E-27 6.5E-32 146.5 13.7 101 14-114 1-102 (162)
31 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.8E-27 1E-31 147.3 14.4 100 13-112 1-101 (170)
32 cd04176 Rap2 Rap2 subgroup. T 100.0 5.2E-27 1.1E-31 145.6 14.0 101 12-112 1-101 (163)
33 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.7E-27 1E-31 150.7 14.2 100 13-112 1-102 (201)
34 cd04175 Rap1 Rap1 subgroup. T 100.0 9E-27 1.9E-31 144.8 14.3 101 12-112 1-101 (164)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 1.3E-26 2.7E-31 144.0 14.6 101 13-113 1-102 (168)
36 cd01867 Rab8_Rab10_Rab13_like 100.0 1.4E-26 3E-31 144.5 14.7 103 11-113 2-105 (167)
37 cd04144 Ras2 Ras2 subfamily. 100.0 7.7E-27 1.7E-31 148.6 13.8 100 14-113 1-100 (190)
38 cd04117 Rab15 Rab15 subfamily. 100.0 1.2E-26 2.6E-31 144.2 14.3 101 13-113 1-102 (161)
39 PLN00023 GTP-binding protein; 100.0 8.1E-27 1.8E-31 157.4 14.2 106 8-113 17-136 (334)
40 PLN03110 Rab GTPase; Provision 99.9 2.5E-26 5.5E-31 148.9 15.9 113 1-113 1-114 (216)
41 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.2E-26 4.7E-31 142.1 14.7 102 12-113 1-102 (162)
42 cd04124 RabL2 RabL2 subfamily. 99.9 2.2E-26 4.9E-31 142.9 14.4 100 13-112 1-101 (161)
43 KOG0088|consensus 99.9 5.8E-28 1.2E-32 146.7 6.7 108 7-114 8-116 (218)
44 cd01865 Rab3 Rab3 subfamily. 99.9 2.9E-26 6.2E-31 142.8 14.4 101 13-113 2-103 (165)
45 cd04116 Rab9 Rab9 subfamily. 99.9 3.5E-26 7.7E-31 142.8 14.6 105 9-113 2-107 (170)
46 cd04127 Rab27A Rab27a subfamil 99.9 3.1E-26 6.7E-31 144.2 14.4 102 11-112 3-115 (180)
47 cd04143 Rhes_like Rhes_like su 99.9 1.9E-26 4.1E-31 152.1 13.9 100 13-112 1-100 (247)
48 cd04110 Rab35 Rab35 subfamily. 99.9 4.9E-26 1.1E-30 145.9 15.2 104 10-113 4-108 (199)
49 cd04109 Rab28 Rab28 subfamily. 99.9 3.4E-26 7.3E-31 148.2 14.2 101 13-113 1-103 (215)
50 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6.3E-26 1.4E-30 141.2 14.9 102 12-113 2-104 (166)
51 cd04134 Rho3 Rho3 subfamily. 99.9 2.5E-26 5.5E-31 146.1 13.0 100 14-113 2-102 (189)
52 cd04111 Rab39 Rab39 subfamily. 99.9 4.6E-26 9.9E-31 147.3 14.3 102 12-113 2-105 (211)
53 smart00173 RAS Ras subfamily o 99.9 5.7E-26 1.2E-30 141.0 14.3 100 13-112 1-100 (164)
54 cd04140 ARHI_like ARHI subfami 99.9 6.5E-26 1.4E-30 141.2 14.5 101 13-113 2-102 (165)
55 cd00877 Ran Ran (Ras-related n 99.9 4.6E-26 9.9E-31 142.3 13.7 101 13-113 1-102 (166)
56 KOG0393|consensus 99.9 1E-27 2.2E-32 151.4 6.0 105 10-114 2-108 (198)
57 cd01864 Rab19 Rab19 subfamily. 99.9 1.3E-25 2.9E-30 139.7 14.7 102 11-112 2-104 (165)
58 cd04125 RabA_like RabA-like su 99.9 9.7E-26 2.1E-30 143.2 14.4 101 13-113 1-102 (188)
59 KOG0091|consensus 99.9 6.6E-27 1.4E-31 142.6 8.5 105 9-113 5-111 (213)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.9E-25 4.2E-30 138.4 15.0 101 12-112 2-102 (164)
61 cd04130 Wrch_1 Wrch-1 subfamil 99.9 6.4E-26 1.4E-30 142.3 12.7 100 13-112 1-101 (173)
62 cd04132 Rho4_like Rho4-like su 99.9 1E-25 2.3E-30 142.7 13.8 100 13-112 1-102 (187)
63 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-25 3.1E-30 138.9 14.1 100 13-112 1-103 (162)
64 cd01868 Rab11_like Rab11-like. 99.9 2.2E-25 4.9E-30 138.5 14.9 103 11-113 2-105 (165)
65 cd04113 Rab4 Rab4 subfamily. 99.9 2.2E-25 4.8E-30 138.0 14.5 101 13-113 1-102 (161)
66 smart00174 RHO Rho (Ras homolo 99.9 1.2E-25 2.5E-30 140.9 12.9 99 15-113 1-100 (174)
67 cd01866 Rab2 Rab2 subfamily. 99.9 3.6E-25 7.9E-30 138.3 15.1 103 11-113 3-106 (168)
68 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.9E-25 6.4E-30 138.9 14.2 102 12-113 2-105 (170)
69 smart00176 RAN Ran (Ras-relate 99.9 1.5E-25 3.3E-30 143.8 13.1 96 18-113 1-97 (200)
70 cd04118 Rab24 Rab24 subfamily. 99.9 2.9E-25 6.3E-30 141.4 14.0 101 13-113 1-103 (193)
71 KOG0083|consensus 99.9 1.9E-27 4E-32 141.0 3.5 98 16-113 1-100 (192)
72 cd04103 Centaurin_gamma Centau 99.9 3.8E-25 8.3E-30 137.3 13.9 95 13-113 1-95 (158)
73 cd04177 RSR1 RSR1 subgroup. R 99.9 5.5E-25 1.2E-29 137.4 14.3 101 12-112 1-101 (168)
74 cd01861 Rab6 Rab6 subfamily. 99.9 7E-25 1.5E-29 135.6 14.4 101 13-113 1-102 (161)
75 cd04112 Rab26 Rab26 subfamily. 99.9 1.1E-24 2.4E-29 138.7 14.3 101 13-113 1-103 (191)
76 KOG0097|consensus 99.9 3.3E-25 7E-30 132.8 10.7 111 1-112 1-112 (215)
77 cd01892 Miro2 Miro2 subfamily. 99.9 9.6E-25 2.1E-29 136.7 13.3 101 10-110 2-104 (169)
78 PLN03108 Rab family protein; P 99.9 2.2E-24 4.8E-29 139.3 15.2 103 11-113 5-108 (210)
79 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.8E-24 3.8E-29 134.3 13.8 101 13-113 1-105 (164)
80 cd01860 Rab5_related Rab5-rela 99.9 2.7E-24 5.8E-29 133.3 14.4 102 12-113 1-103 (163)
81 cd04146 RERG_RasL11_like RERG/ 99.9 1.4E-24 3.1E-29 135.1 13.0 100 14-113 1-101 (165)
82 smart00175 RAB Rab subfamily o 99.9 3.7E-24 7.9E-29 132.6 14.3 101 13-113 1-102 (164)
83 cd04135 Tc10 TC10 subfamily. 99.9 1.6E-24 3.5E-29 135.7 12.7 100 13-112 1-101 (174)
84 cd01870 RhoA_like RhoA-like su 99.9 2.1E-24 4.5E-29 135.3 12.9 101 12-112 1-102 (175)
85 PTZ00132 GTP-binding nuclear p 99.9 8.1E-24 1.8E-28 137.0 15.2 107 7-113 4-111 (215)
86 cd01873 RhoBTB RhoBTB subfamil 99.9 3.1E-24 6.7E-29 137.3 12.5 100 12-113 2-118 (195)
87 cd01863 Rab18 Rab18 subfamily. 99.9 1.1E-23 2.4E-28 130.4 14.2 101 13-113 1-102 (161)
88 cd01862 Rab7 Rab7 subfamily. 99.9 1.2E-23 2.5E-28 131.3 14.3 100 13-112 1-101 (172)
89 cd04123 Rab21 Rab21 subfamily. 99.9 1.7E-23 3.7E-28 129.1 14.4 101 13-113 1-102 (162)
90 cd04147 Ras_dva Ras-dva subfam 99.9 1.1E-23 2.4E-28 134.9 13.8 100 14-113 1-100 (198)
91 cd04142 RRP22 RRP22 subfamily. 99.9 9.3E-24 2E-28 135.4 13.4 101 13-113 1-110 (198)
92 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-23 2.3E-28 136.9 13.6 96 13-112 1-96 (220)
93 KOG0081|consensus 99.9 4.9E-26 1.1E-30 138.4 2.4 105 8-112 5-119 (219)
94 PLN03118 Rab family protein; P 99.9 3.8E-23 8.1E-28 133.6 15.2 104 8-112 10-115 (211)
95 cd04139 RalA_RalB RalA/RalB su 99.9 4.3E-23 9.3E-28 127.7 14.0 100 13-112 1-100 (164)
96 cd04114 Rab30 Rab30 subfamily. 99.9 8.5E-23 1.8E-27 127.3 14.9 104 10-113 5-109 (169)
97 cd04148 RGK RGK subfamily. Th 99.9 4.1E-23 9E-28 134.3 14.0 99 13-113 1-102 (221)
98 KOG0395|consensus 99.9 1.3E-23 2.9E-28 134.2 11.2 104 11-114 2-105 (196)
99 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.2E-23 4.7E-28 130.0 11.8 96 14-112 1-96 (164)
100 cd04149 Arf6 Arf6 subfamily. 99.9 3.2E-23 7E-28 129.7 11.6 97 11-111 8-104 (168)
101 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.6E-23 7.9E-28 128.4 11.7 95 13-111 1-95 (159)
102 smart00177 ARF ARF-like small 99.9 4.4E-23 9.5E-28 129.8 12.1 98 10-111 11-108 (175)
103 cd01893 Miro1 Miro1 subfamily. 99.9 9.5E-23 2.1E-27 127.1 13.4 100 13-113 1-101 (166)
104 cd00154 Rab Rab family. Rab G 99.9 1.6E-22 3.5E-27 123.9 14.1 101 13-113 1-102 (159)
105 cd00876 Ras Ras family. The R 99.9 1.6E-22 3.5E-27 124.5 14.0 100 14-113 1-100 (160)
106 cd00157 Rho Rho (Ras homology) 99.9 1.1E-22 2.4E-27 126.8 13.3 101 13-113 1-102 (171)
107 PLN00223 ADP-ribosylation fact 99.9 7.1E-23 1.5E-27 129.6 11.8 98 10-111 15-112 (181)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.8E-22 3.8E-27 127.9 13.5 101 11-112 2-104 (183)
109 cd04137 RheB Rheb (Ras Homolog 99.9 2.3E-22 5E-27 126.6 13.9 100 13-112 2-101 (180)
110 cd04129 Rho2 Rho2 subfamily. 99.9 2E-22 4.4E-27 128.0 13.4 101 13-113 2-103 (187)
111 PF08477 Miro: Miro-like prote 99.9 2.6E-22 5.7E-27 118.8 13.0 99 14-112 1-102 (119)
112 PTZ00133 ADP-ribosylation fact 99.9 1.2E-22 2.6E-27 128.6 12.0 97 11-111 16-112 (182)
113 KOG4252|consensus 99.9 1.8E-24 3.9E-29 133.9 2.6 107 7-113 15-122 (246)
114 cd04158 ARD1 ARD1 subfamily. 99.9 2.7E-22 5.8E-27 125.5 11.3 95 14-112 1-95 (169)
115 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.2E-22 9.2E-27 124.5 11.3 95 14-112 1-95 (167)
116 cd04154 Arl2 Arl2 subfamily. 99.9 1E-21 2.2E-26 123.2 12.8 101 7-111 9-109 (173)
117 COG1100 GTPase SAR1 and relate 99.9 1.3E-21 2.7E-26 126.6 13.1 103 11-113 4-108 (219)
118 cd04157 Arl6 Arl6 subfamily. 99.9 1.1E-21 2.4E-26 121.3 11.0 96 14-112 1-97 (162)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.1E-21 1.3E-25 119.9 11.8 98 11-112 14-111 (174)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.3E-20 5E-25 115.3 12.6 96 14-112 1-96 (160)
121 KOG1673|consensus 99.9 1.6E-21 3.4E-26 118.3 6.0 108 7-114 15-123 (205)
122 cd04151 Arl1 Arl1 subfamily. 99.8 3E-20 6.5E-25 114.9 11.5 93 14-110 1-93 (158)
123 cd04159 Arl10_like Arl10-like 99.8 8.1E-20 1.8E-24 112.0 13.0 95 14-111 1-95 (159)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.8 5.1E-20 1.1E-24 113.6 11.4 95 14-112 1-95 (158)
125 smart00178 SAR Sar1p-like memb 99.8 1.7E-19 3.7E-24 114.3 12.8 98 10-111 15-112 (184)
126 cd00879 Sar1 Sar1 subfamily. 99.8 2.3E-19 5E-24 113.9 13.2 99 10-112 17-115 (190)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.8E-19 6E-24 111.2 12.3 96 14-112 1-102 (167)
128 KOG0073|consensus 99.8 1.1E-18 2.4E-23 106.6 11.0 98 9-110 13-110 (185)
129 cd04105 SR_beta Signal recogni 99.8 3.3E-18 7.1E-23 110.1 12.1 98 14-111 2-101 (203)
130 KOG0096|consensus 99.8 6E-19 1.3E-23 110.0 8.2 106 10-115 8-114 (216)
131 PF00025 Arf: ADP-ribosylation 99.8 4E-19 8.7E-24 111.9 7.5 100 9-112 11-110 (175)
132 cd04155 Arl3 Arl3 subfamily. 99.8 1E-17 2.2E-22 104.8 13.4 99 9-111 11-109 (173)
133 TIGR00231 small_GTP small GTP- 99.8 1.1E-17 2.3E-22 102.1 12.8 101 12-112 1-104 (161)
134 cd01890 LepA LepA subfamily. 99.8 5E-18 1.1E-22 106.6 10.9 95 14-108 2-115 (179)
135 KOG0070|consensus 99.8 1.6E-18 3.4E-23 107.7 6.8 102 8-113 13-114 (181)
136 KOG3883|consensus 99.8 3E-17 6.4E-22 99.6 11.1 105 11-115 8-116 (198)
137 cd01891 TypA_BipA TypA (tyrosi 99.8 1.3E-17 2.7E-22 106.5 9.7 95 14-109 4-113 (194)
138 cd04171 SelB SelB subfamily. 99.7 4.3E-17 9.3E-22 100.7 10.8 89 14-103 2-97 (164)
139 cd01898 Obg Obg subfamily. Th 99.7 5.8E-17 1.3E-21 100.9 10.8 98 14-112 2-108 (170)
140 PTZ00099 rab6; Provisional 99.7 1.1E-16 2.4E-21 101.0 10.9 79 35-113 3-82 (176)
141 TIGR02528 EutP ethanolamine ut 99.7 2E-17 4.4E-22 100.5 6.0 79 14-107 2-85 (142)
142 cd00882 Ras_like_GTPase Ras-li 99.7 7.1E-16 1.5E-20 93.0 12.1 90 17-106 1-91 (157)
143 cd01878 HflX HflX subfamily. 99.7 3.8E-16 8.3E-21 100.2 11.3 100 10-112 39-149 (204)
144 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 5.1E-16 1.1E-20 96.4 11.3 83 14-96 2-86 (168)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.7 5.5E-16 1.2E-20 109.7 11.9 97 11-111 202-308 (442)
146 KOG4423|consensus 99.7 3.6E-20 7.9E-25 115.3 -8.2 103 9-111 22-126 (229)
147 KOG0075|consensus 99.7 3.6E-17 7.7E-22 98.6 4.9 97 11-110 19-115 (186)
148 KOG0071|consensus 99.7 5E-16 1.1E-20 93.0 9.4 98 11-112 16-113 (180)
149 KOG0074|consensus 99.7 1.1E-15 2.5E-20 91.7 11.0 100 8-110 13-112 (185)
150 cd01897 NOG NOG1 is a nucleola 99.7 1.8E-15 4E-20 94.0 11.4 96 14-112 2-110 (168)
151 TIGR03156 GTP_HflX GTP-binding 99.7 3.7E-15 8.1E-20 102.8 12.1 100 11-112 188-297 (351)
152 TIGR01393 lepA GTP-binding pro 99.6 3.8E-15 8.2E-20 108.7 11.8 96 14-109 5-119 (595)
153 PRK00093 GTP-binding protein D 99.6 1.6E-14 3.5E-19 102.1 12.5 94 13-108 2-107 (435)
154 PRK03003 GTP-binding protein D 99.6 1.5E-14 3.1E-19 103.4 12.3 96 12-110 38-143 (472)
155 PRK03003 GTP-binding protein D 99.6 1.4E-14 2.9E-19 103.5 12.1 97 11-110 210-319 (472)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.1E-14 2.3E-19 89.2 9.8 93 13-107 2-104 (157)
157 PRK05291 trmE tRNA modificatio 99.6 1.2E-14 2.5E-19 103.3 11.3 95 11-107 214-318 (449)
158 PRK04213 GTP-binding protein; 99.6 1.8E-15 4E-20 96.8 6.5 83 8-95 5-102 (201)
159 PRK12299 obgE GTPase CgtA; Rev 99.6 1.6E-14 3.6E-19 99.1 11.5 100 13-113 159-266 (335)
160 cd01879 FeoB Ferrous iron tran 99.6 1.3E-14 2.8E-19 89.2 10.0 81 17-99 1-90 (158)
161 PRK15494 era GTPase Era; Provi 99.6 8.1E-15 1.8E-19 100.8 9.9 98 10-111 50-158 (339)
162 TIGR03598 GTPase_YsxC ribosome 99.6 1.9E-14 4.1E-19 90.8 10.5 92 8-102 14-119 (179)
163 KOG1707|consensus 99.6 8.4E-15 1.8E-19 104.3 9.7 106 7-113 4-110 (625)
164 cd01881 Obg_like The Obg-like 99.6 1.6E-14 3.4E-19 90.2 9.4 95 17-112 1-109 (176)
165 TIGR00436 era GTP-binding prot 99.6 2.3E-14 5.1E-19 95.8 10.4 93 14-110 2-104 (270)
166 cd04167 Snu114p Snu114p subfam 99.6 1.4E-14 3.1E-19 93.8 9.0 95 14-109 2-119 (213)
167 CHL00189 infB translation init 99.6 4.9E-14 1.1E-18 104.4 12.3 95 9-103 241-341 (742)
168 TIGR00487 IF-2 translation ini 99.6 5.5E-14 1.2E-18 102.4 12.2 93 9-102 84-180 (587)
169 TIGR02729 Obg_CgtA Obg family 99.6 7.7E-14 1.7E-18 95.6 12.3 100 13-113 158-268 (329)
170 PRK00454 engB GTP-binding prot 99.6 6.7E-14 1.5E-18 89.1 11.0 90 8-99 20-122 (196)
171 cd01894 EngA1 EngA1 subfamily. 99.6 3.9E-14 8.5E-19 86.8 9.6 83 16-100 1-93 (157)
172 cd00881 GTP_translation_factor 99.6 4.3E-14 9.4E-19 89.1 9.9 84 14-99 1-101 (189)
173 cd04163 Era Era subfamily. Er 99.6 1.1E-13 2.3E-18 85.2 10.8 86 11-96 2-95 (168)
174 PRK11058 GTPase HflX; Provisio 99.6 1.1E-13 2.4E-18 97.7 11.8 98 13-111 198-304 (426)
175 cd01889 SelB_euk SelB subfamil 99.6 4E-14 8.7E-19 90.2 8.7 88 13-100 1-108 (192)
176 cd04168 TetM_like Tet(M)-like 99.5 7E-14 1.5E-18 92.0 9.5 97 14-111 1-114 (237)
177 TIGR03594 GTPase_EngA ribosome 99.5 2.2E-13 4.8E-18 96.2 12.5 92 10-103 170-274 (429)
178 TIGR00491 aIF-2 translation in 99.5 1.2E-13 2.6E-18 100.6 11.0 92 13-104 5-116 (590)
179 TIGR03594 GTPase_EngA ribosome 99.5 2.2E-13 4.8E-18 96.1 12.0 83 14-98 1-93 (429)
180 PRK05306 infB translation init 99.5 2.5E-13 5.5E-18 101.4 12.3 92 9-102 287-382 (787)
181 cd01896 DRG The developmentall 99.5 4.7E-13 1E-17 87.9 12.1 91 14-106 2-101 (233)
182 KOG0076|consensus 99.5 1.4E-13 3.1E-18 85.1 8.6 99 11-112 16-121 (197)
183 TIGR00475 selB selenocysteine- 99.5 2.5E-13 5.5E-18 99.1 11.3 89 13-103 1-96 (581)
184 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 2.3E-13 4.9E-18 89.0 9.7 99 14-114 1-110 (232)
185 cd01895 EngA2 EngA2 subfamily. 99.5 4E-13 8.7E-18 83.3 10.0 89 12-102 2-103 (174)
186 cd04169 RF3 RF3 subfamily. Pe 99.5 3.2E-13 6.9E-18 90.3 10.1 84 14-97 4-108 (267)
187 PRK12297 obgE GTPase CgtA; Rev 99.5 6.9E-13 1.5E-17 93.4 11.7 99 14-113 160-269 (424)
188 PF01926 MMR_HSR1: 50S ribosom 99.5 3E-12 6.5E-17 75.4 12.7 91 14-106 1-104 (116)
189 PRK10218 GTP-binding protein; 99.5 8.6E-13 1.9E-17 96.5 12.2 85 12-96 5-104 (607)
190 PRK09518 bifunctional cytidyla 99.5 5.2E-13 1.1E-17 99.4 11.3 92 11-104 449-553 (712)
191 cd01850 CDC_Septin CDC/Septin. 99.5 3.7E-13 8E-18 90.3 8.8 60 11-70 3-73 (276)
192 PRK05433 GTP-binding protein L 99.5 9.9E-13 2.2E-17 96.2 11.4 95 13-107 8-121 (600)
193 PRK04004 translation initiatio 99.5 1.4E-12 3E-17 95.2 11.7 95 11-105 5-119 (586)
194 COG2229 Predicted GTPase [Gene 99.5 1.4E-12 3E-17 81.4 10.0 101 7-110 5-117 (187)
195 PRK15467 ethanolamine utilizat 99.5 3.4E-13 7.4E-18 83.7 7.1 80 14-108 3-87 (158)
196 PRK00089 era GTPase Era; Revie 99.5 1.8E-12 3.8E-17 87.6 10.9 83 11-95 4-96 (292)
197 cd01876 YihA_EngB The YihA (En 99.4 2.9E-12 6.3E-17 79.0 10.7 93 14-109 1-109 (170)
198 PF02421 FeoB_N: Ferrous iron 99.4 4.6E-12 9.9E-17 78.3 11.0 84 13-98 1-93 (156)
199 PRK09518 bifunctional cytidyla 99.4 2.3E-12 5E-17 96.1 11.2 84 11-96 274-367 (712)
200 cd01885 EF2 EF2 (for archaea a 99.4 4.6E-12 1E-16 82.6 11.3 88 14-102 2-115 (222)
201 smart00010 small_GTPase Small 99.4 9.7E-13 2.1E-17 77.8 7.3 71 13-111 1-72 (124)
202 PRK00093 GTP-binding protein D 99.4 5.1E-12 1.1E-16 89.5 11.2 92 10-103 171-275 (435)
203 PRK12296 obgE GTPase CgtA; Rev 99.4 6.8E-12 1.5E-16 89.7 11.7 100 12-113 159-270 (500)
204 cd04170 EF-G_bact Elongation f 99.4 3E-12 6.4E-17 85.6 9.2 92 14-105 1-109 (268)
205 TIGR01394 TypA_BipA GTP-bindin 99.4 3.8E-12 8.2E-17 93.1 10.3 97 14-111 3-114 (594)
206 cd01888 eIF2_gamma eIF2-gamma 99.4 6.6E-12 1.4E-16 80.8 9.8 46 60-105 83-132 (203)
207 PRK12298 obgE GTPase CgtA; Rev 99.4 1E-11 2.2E-16 86.9 11.5 99 14-113 161-270 (390)
208 cd00880 Era_like Era (E. coli 99.4 3.7E-12 8E-17 77.5 8.1 90 17-108 1-99 (163)
209 cd01899 Ygr210 Ygr210 subfamil 99.4 2.2E-11 4.8E-16 83.1 11.8 81 15-95 1-111 (318)
210 PRK13351 elongation factor G; 99.4 2.7E-12 5.9E-17 95.4 7.9 93 10-105 6-118 (687)
211 cd04166 CysN_ATPS CysN_ATPS su 99.4 5.3E-12 1.2E-16 81.5 8.1 81 14-96 1-113 (208)
212 PRK12317 elongation factor 1-a 99.4 7E-12 1.5E-16 88.7 9.2 85 11-95 5-119 (425)
213 PF09439 SRPRB: Signal recogni 99.3 4.2E-12 9.1E-17 80.1 6.9 96 13-111 4-104 (181)
214 cd04104 p47_IIGP_like p47 (47- 99.3 1.5E-11 3.2E-16 78.8 9.6 81 12-92 1-89 (197)
215 TIGR00991 3a0901s02IAP34 GTP-b 99.3 4.1E-11 8.8E-16 81.2 11.7 85 8-94 34-129 (313)
216 TIGR00483 EF-1_alpha translati 99.3 1E-11 2.2E-16 87.9 9.1 90 9-99 4-124 (426)
217 PRK09554 feoB ferrous iron tra 99.3 4.8E-11 1E-15 89.5 12.0 96 11-111 2-110 (772)
218 PRK09602 translation-associate 99.3 9.8E-11 2.1E-15 82.2 12.7 82 13-94 2-113 (396)
219 PRK00741 prfC peptide chain re 99.3 2.2E-11 4.7E-16 88.1 9.6 86 11-96 9-115 (526)
220 TIGR00485 EF-Tu translation el 99.3 5.5E-11 1.2E-15 83.4 11.1 95 1-95 1-110 (394)
221 KOG0072|consensus 99.3 3.7E-12 7.9E-17 76.9 4.2 91 10-104 16-106 (182)
222 KOG1423|consensus 99.3 5.8E-11 1.3E-15 79.8 9.8 92 5-96 65-168 (379)
223 TIGR00503 prfC peptide chain r 99.3 9.3E-11 2E-15 84.9 11.1 87 10-96 9-116 (527)
224 TIGR00490 aEF-2 translation el 99.3 4.2E-11 9.2E-16 89.5 9.5 87 10-96 17-122 (720)
225 cd01853 Toc34_like Toc34-like 99.3 1.8E-10 3.8E-15 76.4 11.5 86 8-95 27-126 (249)
226 TIGR03680 eif2g_arch translati 99.3 6.8E-11 1.5E-15 83.3 9.6 93 10-103 2-127 (406)
227 PRK12736 elongation factor Tu; 99.3 1.6E-10 3.5E-15 81.1 11.3 95 1-95 1-110 (394)
228 PRK10512 selenocysteinyl-tRNA- 99.2 1.4E-10 3.1E-15 85.2 11.3 87 14-103 2-97 (614)
229 cd01886 EF-G Elongation factor 99.2 1.2E-10 2.6E-15 78.0 9.9 83 14-96 1-100 (270)
230 COG1160 Predicted GTPases [Gen 99.2 1.6E-10 3.4E-15 81.1 10.5 93 13-107 4-109 (444)
231 PRK12735 elongation factor Tu; 99.2 1.5E-10 3.3E-15 81.3 10.4 96 1-96 1-111 (396)
232 COG1159 Era GTPase [General fu 99.2 9E-11 2E-15 78.4 8.5 87 9-95 3-97 (298)
233 TIGR00437 feoB ferrous iron tr 99.2 1.7E-10 3.7E-15 84.6 10.7 77 19-97 1-86 (591)
234 PF00009 GTP_EFTU: Elongation 99.2 2.8E-10 6E-15 72.4 10.3 84 12-96 3-106 (188)
235 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2E-10 4.3E-15 73.5 9.7 81 13-95 1-95 (196)
236 PF10662 PduV-EutP: Ethanolami 99.2 8.3E-11 1.8E-15 71.5 7.2 72 14-98 3-78 (143)
237 cd01884 EF_Tu EF-Tu subfamily. 99.2 2.4E-10 5.2E-15 73.3 9.7 85 12-96 2-101 (195)
238 PRK04000 translation initiatio 99.2 1.9E-10 4.1E-15 81.2 10.0 96 8-104 5-133 (411)
239 KOG0077|consensus 99.2 1.9E-10 4.2E-15 70.9 8.3 96 12-111 20-115 (193)
240 COG0486 ThdF Predicted GTPase 99.2 3.6E-10 7.9E-15 79.5 10.2 83 12-96 217-309 (454)
241 cd01883 EF1_alpha Eukaryotic e 99.2 2.1E-10 4.5E-15 74.7 8.2 83 14-96 1-113 (219)
242 TIGR00484 EF-G translation elo 99.2 3.6E-10 7.8E-15 84.2 9.6 89 11-101 9-116 (689)
243 PF04548 AIG1: AIG1 family; I 99.1 2.2E-09 4.8E-14 69.6 12.0 81 13-95 1-95 (212)
244 CHL00071 tufA elongation facto 99.1 9.6E-10 2.1E-14 77.6 10.9 92 5-96 5-111 (409)
245 PLN03126 Elongation factor Tu; 99.1 1.5E-09 3.2E-14 77.9 10.7 88 9-96 78-180 (478)
246 COG3596 Predicted GTPase [Gene 99.1 3.5E-10 7.6E-15 75.0 6.0 87 9-97 36-131 (296)
247 PRK00049 elongation factor Tu; 99.1 1.8E-09 3.8E-14 76.0 9.9 96 1-96 1-111 (396)
248 PLN00043 elongation factor 1-a 99.0 1.2E-09 2.7E-14 77.8 7.8 85 11-95 6-120 (447)
249 TIGR00993 3a0901s04IAP86 chlor 99.0 6.2E-09 1.4E-13 76.6 11.3 101 10-112 116-230 (763)
250 COG0218 Predicted GTPase [Gene 99.0 9.4E-09 2E-13 65.5 10.8 97 9-108 21-133 (200)
251 cd04165 GTPBP1_like GTPBP1-lik 99.0 3.2E-09 6.8E-14 69.5 8.7 81 14-96 1-122 (224)
252 TIGR02034 CysN sulfate adenyly 99.0 1.9E-09 4.1E-14 76.1 8.1 84 13-96 1-116 (406)
253 PTZ00258 GTP-binding protein; 99.0 1.4E-08 2.9E-13 71.2 11.9 87 8-94 17-126 (390)
254 COG1160 Predicted GTPases [Gen 99.0 4.3E-09 9.4E-14 74.0 9.3 87 11-99 177-276 (444)
255 PRK05124 cysN sulfate adenylyl 99.0 4.3E-09 9.3E-14 75.6 9.6 88 9-96 24-143 (474)
256 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2.2E-09 4.7E-14 65.4 6.5 53 14-70 85-138 (141)
257 KOG1191|consensus 99.0 8.4E-09 1.8E-13 73.1 10.1 94 12-107 268-374 (531)
258 PF05783 DLIC: Dynein light in 99.0 7.1E-09 1.5E-13 74.1 9.4 101 10-113 23-131 (472)
259 PTZ00141 elongation factor 1- 99.0 9.1E-09 2E-13 73.4 9.9 87 10-96 5-121 (446)
260 KOG3905|consensus 99.0 7.9E-09 1.7E-13 70.4 8.9 101 12-115 52-160 (473)
261 COG1084 Predicted GTPase [Gene 99.0 3E-08 6.5E-13 67.3 11.5 101 9-111 165-277 (346)
262 PRK12739 elongation factor G; 98.9 1.1E-08 2.4E-13 76.5 10.3 86 10-97 6-110 (691)
263 COG1163 DRG Predicted GTPase [ 98.9 8E-09 1.7E-13 70.1 8.1 94 9-104 60-162 (365)
264 PLN03127 Elongation factor Tu; 98.9 1.2E-08 2.7E-13 72.7 9.4 89 8-96 57-160 (447)
265 PRK05506 bifunctional sulfate 98.9 1.1E-08 2.3E-13 75.8 9.2 88 9-96 21-140 (632)
266 PF00350 Dynamin_N: Dynamin fa 98.9 3.9E-08 8.5E-13 61.1 10.5 50 62-111 103-156 (168)
267 PRK09601 GTP-binding protein Y 98.9 5.9E-08 1.3E-12 67.4 12.2 82 13-94 3-107 (364)
268 KOG1707|consensus 98.9 1.3E-08 2.7E-13 73.4 8.8 102 5-108 418-520 (625)
269 cd01900 YchF YchF subfamily. 98.9 1.4E-08 3E-13 68.2 8.5 80 15-94 1-103 (274)
270 PF05049 IIGP: Interferon-indu 98.9 8.7E-09 1.9E-13 71.6 7.3 82 11-92 34-123 (376)
271 cd00066 G-alpha G protein alph 98.9 3.3E-08 7.1E-13 67.8 9.9 38 59-96 160-197 (317)
272 PF00735 Septin: Septin; Inte 98.9 1.4E-08 3.1E-13 68.5 7.7 59 11-69 3-72 (281)
273 PRK12740 elongation factor G; 98.9 9.6E-09 2.1E-13 76.5 7.2 88 18-105 1-105 (668)
274 PLN00116 translation elongatio 98.8 2.8E-08 6E-13 75.7 9.1 97 9-106 16-144 (843)
275 COG0370 FeoB Fe2+ transport sy 98.8 5.7E-08 1.2E-12 71.3 10.2 85 11-97 2-95 (653)
276 cd01856 YlqF YlqF. Proteins o 98.8 1.9E-08 4.1E-13 63.1 6.8 57 10-70 113-170 (171)
277 PRK00007 elongation factor G; 98.8 6.8E-08 1.5E-12 72.3 10.7 90 9-100 7-115 (693)
278 KOG3886|consensus 98.8 1E-08 2.2E-13 66.7 4.9 93 13-107 5-105 (295)
279 KOG0705|consensus 98.8 1E-08 2.2E-13 73.7 4.8 98 8-111 26-123 (749)
280 cd01859 MJ1464 MJ1464. This f 98.8 5.2E-08 1.1E-12 60.1 7.2 55 11-69 100-155 (156)
281 PRK07560 elongation factor EF- 98.8 4.8E-08 1E-12 73.5 8.2 88 11-98 19-125 (731)
282 PTZ00416 elongation factor 2; 98.8 8.6E-08 1.9E-12 73.0 9.4 88 11-98 18-130 (836)
283 KOG0090|consensus 98.7 6E-08 1.3E-12 62.4 6.8 93 13-109 39-135 (238)
284 KOG1489|consensus 98.7 1.6E-07 3.6E-12 63.7 9.1 101 13-114 197-308 (366)
285 cd01858 NGP_1 NGP-1. Autoanti 98.7 8E-08 1.7E-12 59.4 6.9 55 11-69 101-156 (157)
286 cd04178 Nucleostemin_like Nucl 98.7 1E-07 2.2E-12 60.1 7.2 55 11-69 116-171 (172)
287 TIGR03596 GTPase_YlqF ribosome 98.7 2.7E-07 5.8E-12 62.2 9.5 57 10-70 116-173 (276)
288 COG0532 InfB Translation initi 98.7 1.6E-07 3.5E-12 67.2 8.6 93 12-104 5-102 (509)
289 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.9E-07 4.2E-12 63.2 7.7 58 10-71 119-177 (287)
290 cd01882 BMS1 Bms1. Bms1 is an 98.6 5.9E-07 1.3E-11 58.8 9.6 80 10-96 37-116 (225)
291 COG5256 TEF1 Translation elong 98.6 3.4E-07 7.3E-12 64.0 7.5 86 11-96 6-121 (428)
292 cd01855 YqeH YqeH. YqeH is an 98.6 2.3E-07 5.1E-12 59.0 5.9 24 13-36 128-151 (190)
293 KOG1145|consensus 98.5 6.9E-07 1.5E-11 64.5 8.3 92 10-104 151-248 (683)
294 COG5019 CDC3 Septin family pro 98.5 9.3E-07 2E-11 61.0 8.4 65 9-73 20-95 (373)
295 PF03193 DUF258: Protein of un 98.5 1.5E-07 3.3E-12 58.5 3.9 23 14-36 37-59 (161)
296 cd01851 GBP Guanylate-binding 98.5 4.8E-06 1E-10 54.6 10.3 95 12-107 7-116 (224)
297 PRK12288 GTPase RsgA; Reviewed 98.5 3.1E-07 6.6E-12 63.7 4.8 23 15-37 208-230 (347)
298 cd01849 YlqF_related_GTPase Yl 98.4 1.5E-06 3.3E-11 53.6 7.1 55 10-69 98-154 (155)
299 TIGR00092 GTP-binding protein 98.4 3.3E-06 7.3E-11 58.9 9.3 82 13-94 3-108 (368)
300 COG4917 EutP Ethanolamine util 98.4 3.8E-07 8.3E-12 54.2 3.9 73 14-98 3-79 (148)
301 KOG0468|consensus 98.4 2E-06 4.3E-11 63.6 8.3 100 9-108 125-245 (971)
302 KOG1547|consensus 98.4 2.5E-06 5.4E-11 56.3 8.0 64 10-73 44-117 (336)
303 KOG3887|consensus 98.4 5.3E-07 1.1E-11 59.4 4.7 88 13-104 28-121 (347)
304 COG1161 Predicted GTPases [Gen 98.4 1.2E-06 2.5E-11 60.3 6.5 57 10-70 130-187 (322)
305 PRK14845 translation initiatio 98.4 2.4E-06 5.2E-11 66.3 8.7 82 23-104 472-573 (1049)
306 KOG2655|consensus 98.4 1.5E-06 3.2E-11 60.2 6.9 62 9-70 18-89 (366)
307 COG0536 Obg Predicted GTPase [ 98.4 4.3E-06 9.2E-11 57.4 8.2 99 15-114 162-271 (369)
308 KOG0462|consensus 98.3 2.6E-06 5.7E-11 61.6 7.4 97 13-109 61-174 (650)
309 COG0480 FusA Translation elong 98.3 3.8E-06 8.3E-11 62.9 7.9 102 9-110 7-126 (697)
310 COG2262 HflX GTPases [General 98.3 1.4E-05 3.1E-10 56.0 10.2 103 8-111 188-299 (411)
311 cd01854 YjeQ_engC YjeQ/EngC. 98.3 9.7E-07 2.1E-11 59.8 4.2 25 13-37 162-186 (287)
312 TIGR00157 ribosome small subun 98.3 1E-06 2.2E-11 58.4 4.2 24 13-36 121-144 (245)
313 PRK12289 GTPase RsgA; Reviewed 98.3 2.3E-06 4.9E-11 59.5 6.0 22 15-36 175-196 (352)
314 COG0012 Predicted GTPase, prob 98.2 1.8E-05 3.8E-10 55.0 9.3 83 12-94 2-108 (372)
315 smart00053 DYNc Dynamin, GTPas 98.2 2.9E-05 6.4E-10 51.4 10.0 28 10-37 24-51 (240)
316 PTZ00327 eukaryotic translatio 98.2 9.8E-06 2.1E-10 58.3 7.4 89 8-96 30-153 (460)
317 KOG1954|consensus 98.2 2.2E-05 4.8E-10 54.8 8.7 102 11-112 57-210 (532)
318 COG5192 BMS1 GTP-binding prote 98.2 1E-05 2.2E-10 59.3 7.3 81 8-95 65-145 (1077)
319 COG1162 Predicted GTPases [Gen 98.2 2E-06 4.4E-11 58.2 3.3 21 14-34 166-186 (301)
320 PRK00098 GTPase RsgA; Reviewed 98.2 3.5E-06 7.5E-11 57.4 4.5 24 13-36 165-188 (298)
321 TIGR03597 GTPase_YqeH ribosome 98.1 6.8E-06 1.5E-10 57.4 5.6 24 13-36 155-178 (360)
322 TIGR02836 spore_IV_A stage IV 98.1 7.6E-05 1.7E-09 53.1 10.5 106 8-113 13-180 (492)
323 COG1217 TypA Predicted membran 98.1 1.3E-05 2.9E-10 57.2 6.5 83 13-95 6-103 (603)
324 COG1618 Predicted nucleotide k 98.1 1.3E-05 2.9E-10 49.8 5.6 56 11-68 4-59 (179)
325 KOG0082|consensus 98.0 1.1E-05 2.4E-10 55.9 5.2 37 60-96 195-231 (354)
326 KOG1491|consensus 98.0 7E-05 1.5E-09 51.6 8.8 88 8-95 16-126 (391)
327 PRK13796 GTPase YqeH; Provisio 98.0 1.4E-05 3.1E-10 55.9 5.7 23 13-35 161-183 (365)
328 KOG4273|consensus 98.0 2.2E-05 4.7E-10 52.3 6.0 92 14-107 6-102 (418)
329 KOG1486|consensus 98.0 2.3E-05 4.9E-10 52.2 6.0 90 9-100 59-156 (364)
330 KOG0458|consensus 98.0 5.6E-05 1.2E-09 55.1 8.0 87 9-95 174-290 (603)
331 PRK08118 topology modulation p 98.0 7.9E-06 1.7E-10 51.2 3.2 22 14-35 3-24 (167)
332 PF13207 AAA_17: AAA domain; P 98.0 7.5E-06 1.6E-10 48.2 2.9 22 14-35 1-22 (121)
333 COG0481 LepA Membrane GTPase L 98.0 4E-05 8.7E-10 55.0 6.9 97 14-110 11-126 (603)
334 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.4E-10 51.1 3.2 23 13-35 1-23 (178)
335 COG4108 PrfC Peptide chain rel 97.9 3.9E-05 8.5E-10 54.5 5.9 83 14-96 14-117 (528)
336 PRK07261 topology modulation p 97.9 1.3E-05 2.9E-10 50.4 3.2 22 14-35 2-23 (171)
337 COG0050 TufB GTPases - transla 97.9 5.5E-05 1.2E-09 51.4 6.1 95 1-95 1-110 (394)
338 KOG0461|consensus 97.9 0.00013 2.8E-09 50.7 8.0 86 11-96 6-106 (522)
339 KOG1144|consensus 97.9 6.4E-05 1.4E-09 56.5 6.8 88 8-95 471-575 (1064)
340 smart00275 G_alpha G protein a 97.9 0.00022 4.8E-09 49.6 9.1 37 59-95 183-219 (342)
341 PRK13768 GTPase; Provisional 97.8 8.6E-05 1.9E-09 49.5 6.7 36 61-96 98-141 (253)
342 KOG3859|consensus 97.8 5.4E-05 1.2E-09 51.1 5.4 62 8-69 38-104 (406)
343 PF03266 NTPase_1: NTPase; In 97.8 4E-05 8.7E-10 48.1 4.6 52 14-67 1-52 (168)
344 PF13671 AAA_33: AAA domain; P 97.8 1.7E-05 3.8E-10 47.9 2.7 19 15-33 2-20 (143)
345 PRK14738 gmk guanylate kinase; 97.8 5.4E-05 1.2E-09 49.0 4.6 30 6-35 7-36 (206)
346 PF13521 AAA_28: AAA domain; P 97.8 2E-05 4.4E-10 48.9 2.4 22 14-35 1-22 (163)
347 PRK06217 hypothetical protein; 97.7 3.9E-05 8.5E-10 48.6 3.2 23 13-35 2-24 (183)
348 KOG1424|consensus 97.7 0.00011 2.5E-09 53.0 5.7 54 12-69 314-368 (562)
349 PF00004 AAA: ATPase family as 97.7 5.3E-05 1.2E-09 44.9 3.2 21 15-35 1-21 (132)
350 cd02019 NK Nucleoside/nucleoti 97.7 6.2E-05 1.3E-09 40.3 3.1 21 15-35 2-22 (69)
351 smart00382 AAA ATPases associa 97.7 5.7E-05 1.2E-09 44.6 3.3 27 13-39 3-29 (148)
352 PRK03839 putative kinase; Prov 97.6 5.9E-05 1.3E-09 47.6 3.2 21 14-34 2-22 (180)
353 PRK14530 adenylate kinase; Pro 97.6 6.3E-05 1.4E-09 48.8 3.4 21 13-33 4-24 (215)
354 PF13555 AAA_29: P-loop contai 97.6 7.7E-05 1.7E-09 39.1 3.0 21 14-34 25-45 (62)
355 COG1126 GlnQ ABC-type polar am 97.6 5.4E-05 1.2E-09 49.3 2.9 22 14-35 30-51 (240)
356 TIGR03348 VI_IcmF type VI secr 97.6 0.0006 1.3E-08 54.3 9.2 78 15-96 114-214 (1169)
357 cd02042 ParA ParA and ParB of 97.6 0.002 4.4E-08 36.8 9.2 82 15-107 2-84 (104)
358 PRK05480 uridine/cytidine kina 97.6 0.0001 2.2E-09 47.6 4.0 23 12-34 6-28 (209)
359 cd00009 AAA The AAA+ (ATPases 97.6 0.00076 1.6E-08 40.1 7.6 25 13-37 20-44 (151)
360 TIGR02322 phosphon_PhnN phosph 97.6 6.8E-05 1.5E-09 47.2 3.1 22 14-35 3-24 (179)
361 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00056 1.2E-08 41.4 6.9 22 14-35 24-45 (133)
362 PF07728 AAA_5: AAA domain (dy 97.6 6.1E-05 1.3E-09 45.5 2.7 21 14-34 1-21 (139)
363 PRK10078 ribose 1,5-bisphospho 97.6 6.7E-05 1.5E-09 47.7 3.0 22 14-35 4-25 (186)
364 PF13238 AAA_18: AAA domain; P 97.6 6.5E-05 1.4E-09 44.3 2.8 21 15-35 1-21 (129)
365 PRK14737 gmk guanylate kinase; 97.6 9.9E-05 2.2E-09 47.1 3.8 22 14-35 6-27 (186)
366 COG1419 FlhF Flagellar GTP-bin 97.6 0.00051 1.1E-08 48.5 7.5 24 12-35 203-226 (407)
367 cd00071 GMPK Guanosine monopho 97.6 8.2E-05 1.8E-09 45.1 3.1 21 15-35 2-22 (137)
368 PRK14532 adenylate kinase; Pro 97.6 8.5E-05 1.8E-09 47.1 3.2 21 14-34 2-22 (188)
369 PF00005 ABC_tran: ABC transpo 97.5 7.8E-05 1.7E-09 44.8 2.7 22 14-35 13-34 (137)
370 COG1116 TauB ABC-type nitrate/ 97.5 8.2E-05 1.8E-09 49.2 3.0 20 15-34 32-51 (248)
371 PRK13949 shikimate kinase; Pro 97.5 9.8E-05 2.1E-09 46.4 3.2 21 14-34 3-23 (169)
372 TIGR03263 guanyl_kin guanylate 97.5 9.4E-05 2E-09 46.5 3.0 22 14-35 3-24 (180)
373 TIGR00101 ureG urease accessor 97.5 0.00012 2.6E-09 47.2 3.3 23 13-35 2-24 (199)
374 PRK08233 hypothetical protein; 97.5 0.00014 3E-09 45.7 3.5 23 12-34 3-25 (182)
375 TIGR01360 aden_kin_iso1 adenyl 97.5 0.00011 2.3E-09 46.4 3.0 20 14-33 5-24 (188)
376 KOG3347|consensus 97.5 0.0001 2.3E-09 45.3 2.7 24 10-33 5-28 (176)
377 PHA00729 NTP-binding motif con 97.5 0.00017 3.6E-09 47.3 3.8 24 12-35 17-40 (226)
378 cd01428 ADK Adenylate kinase ( 97.5 0.00012 2.5E-09 46.5 3.0 21 14-34 1-21 (194)
379 PF05729 NACHT: NACHT domain 97.5 0.00012 2.6E-09 45.0 2.9 21 15-35 3-23 (166)
380 PRK13851 type IV secretion sys 97.5 0.0019 4.1E-08 45.1 9.0 25 12-36 162-186 (344)
381 PF13401 AAA_22: AAA domain; P 97.5 0.00011 2.4E-09 43.7 2.7 23 14-36 6-28 (131)
382 COG1136 SalX ABC-type antimicr 97.5 0.00011 2.5E-09 48.1 2.9 21 15-35 34-54 (226)
383 KOG0448|consensus 97.5 0.0031 6.8E-08 47.2 10.4 93 9-101 106-250 (749)
384 PF04665 Pox_A32: Poxvirus A32 97.5 0.00013 2.8E-09 48.3 3.1 26 10-35 11-36 (241)
385 PRK05416 glmZ(sRNA)-inactivati 97.5 0.0022 4.8E-08 43.7 9.1 21 14-34 8-28 (288)
386 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.2E-09 46.0 3.2 22 13-34 3-24 (183)
387 PTZ00088 adenylate kinase 1; P 97.4 0.00014 3.1E-09 47.8 3.2 22 13-34 7-28 (229)
388 cd02023 UMPK Uridine monophosp 97.4 0.00014 3.1E-09 46.5 3.1 21 15-35 2-22 (198)
389 PF13191 AAA_16: AAA ATPase do 97.4 0.00012 2.7E-09 45.8 2.7 21 13-33 25-45 (185)
390 KOG2484|consensus 97.4 0.0002 4.3E-09 50.3 3.8 56 10-69 250-306 (435)
391 PRK00300 gmk guanylate kinase; 97.4 0.00015 3.2E-09 46.6 3.1 23 13-35 6-28 (205)
392 TIGR01351 adk adenylate kinase 97.4 0.00015 3.2E-09 47.0 3.0 21 14-34 1-21 (210)
393 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.3E-09 45.6 3.0 20 15-34 2-21 (183)
394 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0029 6.3E-08 40.1 8.8 87 14-110 27-118 (177)
395 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00016 3.5E-09 42.1 2.8 20 14-33 17-36 (107)
396 PRK00625 shikimate kinase; Pro 97.4 0.00018 3.8E-09 45.4 3.2 21 14-34 2-22 (173)
397 PRK02496 adk adenylate kinase; 97.4 0.00018 4E-09 45.5 3.3 22 13-34 2-23 (184)
398 PF03205 MobB: Molybdopterin g 97.4 0.00015 3.2E-09 44.2 2.8 22 14-35 2-23 (140)
399 COG1120 FepC ABC-type cobalami 97.4 0.00015 3.3E-09 48.4 3.0 20 15-34 31-50 (258)
400 KOG2485|consensus 97.4 0.00019 4.1E-09 49.0 3.4 30 9-38 140-169 (335)
401 PRK05057 aroK shikimate kinase 97.4 0.00018 4E-09 45.2 3.2 22 13-34 5-26 (172)
402 TIGR00235 udk uridine kinase. 97.4 0.00024 5.2E-09 45.9 3.8 23 12-34 6-28 (207)
403 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.3E-09 50.2 3.0 20 15-34 32-51 (338)
404 COG1936 Predicted nucleotide k 97.4 0.00017 3.6E-09 45.3 2.8 21 13-33 1-21 (180)
405 PRK10646 ADP-binding protein; 97.4 0.0032 6.8E-08 39.0 8.2 22 14-35 30-51 (153)
406 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 44.8 2.5 21 15-35 1-21 (163)
407 cd03238 ABC_UvrA The excision 97.4 0.00022 4.7E-09 45.2 3.2 21 13-33 22-42 (176)
408 PRK13695 putative NTPase; Prov 97.3 0.00024 5.1E-09 44.6 3.2 22 13-34 1-22 (174)
409 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00022 4.8E-09 46.2 3.1 22 14-35 32-53 (218)
410 COG3638 ABC-type phosphate/pho 97.3 0.00021 4.5E-09 47.1 2.9 20 15-34 33-52 (258)
411 cd02025 PanK Pantothenate kina 97.3 0.00021 4.6E-09 46.7 2.9 20 15-34 2-21 (220)
412 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0031 6.7E-08 35.0 7.4 77 15-105 2-79 (99)
413 COG0194 Gmk Guanylate kinase [ 97.3 0.00025 5.4E-09 45.1 3.1 24 13-36 5-28 (191)
414 PRK13947 shikimate kinase; Pro 97.3 0.00026 5.7E-09 44.1 3.1 21 14-34 3-23 (171)
415 PRK06547 hypothetical protein; 97.3 0.00035 7.6E-09 44.1 3.6 25 10-34 13-37 (172)
416 PF13173 AAA_14: AAA domain 97.3 0.00027 6E-09 42.2 3.1 24 14-37 4-27 (128)
417 TIGR00960 3a0501s02 Type II (G 97.3 0.00026 5.6E-09 45.9 3.1 22 14-35 31-52 (216)
418 PRK01889 GTPase RsgA; Reviewed 97.3 0.00028 6E-09 49.4 3.3 22 14-35 197-218 (356)
419 PRK14528 adenylate kinase; Pro 97.3 0.00029 6.3E-09 44.8 3.2 20 14-33 3-22 (186)
420 PF02367 UPF0079: Uncharacteri 97.3 0.00064 1.4E-08 40.6 4.4 22 14-35 17-38 (123)
421 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00029 6.2E-09 45.5 3.2 22 14-35 29-50 (211)
422 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00029 6.3E-09 45.3 3.1 22 14-35 28-49 (205)
423 cd02021 GntK Gluconate kinase 97.3 0.0003 6.4E-09 43.0 3.0 21 15-35 2-22 (150)
424 TIGR01166 cbiO cobalt transpor 97.3 0.00028 6E-09 44.9 3.0 22 14-35 20-41 (190)
425 cd03264 ABC_drug_resistance_li 97.3 0.00028 6E-09 45.6 3.0 22 14-35 27-48 (211)
426 PF00625 Guanylate_kin: Guanyl 97.3 0.00032 6.9E-09 44.4 3.2 20 15-34 5-24 (183)
427 COG0703 AroK Shikimate kinase 97.3 0.00029 6.2E-09 44.3 2.9 21 13-33 3-23 (172)
428 TIGR02315 ABC_phnC phosphonate 97.3 0.0003 6.5E-09 46.3 3.1 22 14-35 30-51 (243)
429 TIGR02673 FtsE cell division A 97.3 0.00031 6.7E-09 45.4 3.1 22 14-35 30-51 (214)
430 COG1117 PstB ABC-type phosphat 97.3 0.00024 5.3E-09 46.3 2.5 19 15-33 36-54 (253)
431 cd03292 ABC_FtsE_transporter F 97.3 0.00032 6.9E-09 45.3 3.2 22 14-35 29-50 (214)
432 cd03261 ABC_Org_Solvent_Resist 97.3 0.00031 6.8E-09 46.1 3.1 22 14-35 28-49 (235)
433 TIGR03608 L_ocin_972_ABC putat 97.3 0.00032 7E-09 45.0 3.2 22 14-35 26-47 (206)
434 COG3842 PotA ABC-type spermidi 97.3 0.00027 5.9E-09 49.2 3.0 21 15-35 34-54 (352)
435 cd01130 VirB11-like_ATPase Typ 97.2 0.0048 1E-07 39.2 8.5 23 13-35 26-48 (186)
436 PRK00279 adk adenylate kinase; 97.2 0.00033 7.2E-09 45.5 3.2 20 14-33 2-21 (215)
437 PLN02200 adenylate kinase fami 97.2 0.00057 1.2E-08 45.2 4.3 23 12-34 43-65 (234)
438 cd03269 ABC_putative_ATPase Th 97.2 0.00033 7.1E-09 45.2 3.2 22 14-35 28-49 (210)
439 COG0802 Predicted ATPase or ki 97.2 0.0028 6.1E-08 39.0 7.0 22 14-35 27-48 (149)
440 PRK14529 adenylate kinase; Pro 97.2 0.00034 7.3E-09 45.9 3.2 21 13-33 1-21 (223)
441 PRK13900 type IV secretion sys 97.2 0.0039 8.5E-08 43.3 8.5 25 12-36 160-184 (332)
442 cd03259 ABC_Carb_Solutes_like 97.2 0.00034 7.3E-09 45.2 3.2 22 14-35 28-49 (213)
443 PRK10751 molybdopterin-guanine 97.2 0.00047 1E-08 43.5 3.6 22 13-34 7-28 (173)
444 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00035 7.5E-09 45.4 3.1 22 14-35 32-53 (220)
445 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00035 7.6E-09 45.1 3.1 22 14-35 28-49 (213)
446 cd03265 ABC_DrrA DrrA is the A 97.2 0.00036 7.8E-09 45.4 3.2 22 14-35 28-49 (220)
447 PRK06762 hypothetical protein; 97.2 0.00036 7.9E-09 43.3 3.1 22 14-35 4-25 (166)
448 cd03218 ABC_YhbG The ABC trans 97.2 0.00035 7.7E-09 45.7 3.1 22 14-35 28-49 (232)
449 TIGR03015 pepcterm_ATPase puta 97.2 0.00033 7.1E-09 46.7 3.1 22 14-35 45-66 (269)
450 KOG0410|consensus 97.2 0.0035 7.5E-08 43.4 7.9 99 11-110 177-284 (410)
451 cd03229 ABC_Class3 This class 97.2 0.00038 8.3E-09 43.9 3.2 22 14-35 28-49 (178)
452 cd03224 ABC_TM1139_LivF_branch 97.2 0.00035 7.5E-09 45.4 3.1 22 14-35 28-49 (222)
453 cd03260 ABC_PstB_phosphate_tra 97.2 0.00038 8.2E-09 45.4 3.2 23 14-36 28-50 (227)
454 cd00464 SK Shikimate kinase (S 97.2 0.00034 7.3E-09 42.7 2.8 21 14-34 1-21 (154)
455 smart00072 GuKc Guanylate kina 97.2 0.00038 8.2E-09 44.2 3.1 22 15-36 5-26 (184)
456 cd01128 rho_factor Transcripti 97.2 0.00039 8.4E-09 46.4 3.3 24 14-37 18-41 (249)
457 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00037 8.1E-09 45.2 3.2 22 14-35 33-54 (221)
458 cd00227 CPT Chloramphenicol (C 97.2 0.00038 8.2E-09 43.8 3.1 22 14-35 4-25 (175)
459 COG4525 TauB ABC-type taurine 97.2 0.00034 7.5E-09 45.2 2.8 20 15-34 34-53 (259)
460 cd01672 TMPK Thymidine monopho 97.2 0.00037 8E-09 44.1 3.0 20 15-34 3-22 (200)
461 cd03263 ABC_subfamily_A The AB 97.2 0.00036 7.7E-09 45.3 3.0 22 14-35 30-51 (220)
462 PTZ00301 uridine kinase; Provi 97.2 0.00047 1E-08 44.8 3.5 22 12-33 3-24 (210)
463 COG4615 PvdE ABC-type sideroph 97.2 0.00086 1.9E-08 47.6 4.9 82 15-111 352-433 (546)
464 cd03219 ABC_Mj1267_LivG_branch 97.2 0.00036 7.7E-09 45.8 3.0 22 14-35 28-49 (236)
465 TIGR00073 hypB hydrogenase acc 97.2 0.00042 9.1E-09 44.8 3.2 25 11-35 21-45 (207)
466 PRK13541 cytochrome c biogenes 97.2 0.00041 8.9E-09 44.3 3.2 23 14-36 28-50 (195)
467 cd03301 ABC_MalK_N The N-termi 97.2 0.00042 9.1E-09 44.8 3.2 22 14-35 28-49 (213)
468 cd03258 ABC_MetN_methionine_tr 97.2 0.00041 8.8E-09 45.5 3.2 22 14-35 33-54 (233)
469 cd03256 ABC_PhnC_transporter A 97.2 0.00038 8.1E-09 45.8 3.0 22 14-35 29-50 (241)
470 cd03257 ABC_NikE_OppD_transpor 97.2 0.0004 8.7E-09 45.3 3.1 22 14-35 33-54 (228)
471 cd03266 ABC_NatA_sodium_export 97.2 0.00041 8.9E-09 45.0 3.1 22 14-35 33-54 (218)
472 PRK11629 lolD lipoprotein tran 97.2 0.00041 9E-09 45.5 3.2 22 14-35 37-58 (233)
473 PRK11248 tauB taurine transpor 97.2 0.00041 8.8E-09 46.3 3.2 22 14-35 29-50 (255)
474 PRK08099 bifunctional DNA-bind 97.2 0.00039 8.5E-09 49.3 3.2 27 9-35 216-242 (399)
475 TIGR01189 ccmA heme ABC export 97.2 0.00043 9.4E-09 44.3 3.2 22 14-35 28-49 (198)
476 PF03029 ATP_bind_1: Conserved 97.2 0.00025 5.3E-09 47.0 2.1 35 61-95 92-134 (238)
477 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00039 8.4E-09 46.4 3.0 21 14-34 32-52 (254)
478 PRK13540 cytochrome c biogenes 97.2 0.00044 9.4E-09 44.4 3.2 22 14-35 29-50 (200)
479 PRK14526 adenylate kinase; Pro 97.2 0.00045 9.7E-09 45.0 3.2 21 14-34 2-22 (211)
480 PRK15177 Vi polysaccharide exp 97.2 0.00054 1.2E-08 44.5 3.6 22 14-35 15-36 (213)
481 PF01637 Arch_ATPase: Archaeal 97.2 0.00036 7.9E-09 45.0 2.8 24 13-36 21-44 (234)
482 PF00485 PRK: Phosphoribulokin 97.2 0.00037 8.1E-09 44.5 2.8 19 15-33 2-20 (194)
483 COG0466 Lon ATP-dependent Lon 97.2 0.0003 6.6E-09 52.7 2.6 21 13-33 351-371 (782)
484 KOG0467|consensus 97.2 0.0013 2.9E-08 49.7 5.8 99 9-107 6-123 (887)
485 PRK05541 adenylylsulfate kinas 97.2 0.00045 9.7E-09 43.4 3.0 23 12-34 7-29 (176)
486 cd03235 ABC_Metallic_Cations A 97.2 0.00041 9E-09 44.8 2.9 22 14-35 27-48 (213)
487 PRK04040 adenylate kinase; Pro 97.2 0.00046 1E-08 44.1 3.1 23 13-35 3-25 (188)
488 cd03296 ABC_CysA_sulfate_impor 97.1 0.00046 9.9E-09 45.5 3.1 22 14-35 30-51 (239)
489 PRK09270 nucleoside triphospha 97.1 0.0006 1.3E-08 44.7 3.7 25 10-34 31-55 (229)
490 TIGR01978 sufC FeS assembly AT 97.1 0.00045 9.8E-09 45.5 3.1 22 14-35 28-49 (243)
491 KOG1532|consensus 97.1 0.00039 8.5E-09 47.0 2.8 27 8-34 15-41 (366)
492 PRK11247 ssuB aliphatic sulfon 97.1 0.00047 1E-08 46.1 3.2 22 14-35 40-61 (257)
493 KOG0447|consensus 97.1 0.0036 7.8E-08 46.3 7.7 26 9-34 305-330 (980)
494 TIGR03864 PQQ_ABC_ATP ABC tran 97.1 0.00048 1E-08 45.3 3.2 22 14-35 29-50 (236)
495 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.00045 9.7E-09 42.2 2.8 22 14-35 28-49 (144)
496 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00047 1E-08 47.7 3.2 22 13-34 163-184 (325)
497 cd03268 ABC_BcrA_bacitracin_re 97.1 0.00046 1E-08 44.5 3.0 22 14-35 28-49 (208)
498 PRK10895 lipopolysaccharide AB 97.1 0.00049 1.1E-08 45.4 3.2 22 14-35 31-52 (241)
499 PRK10908 cell division protein 97.1 0.0005 1.1E-08 44.7 3.2 22 14-35 30-51 (222)
500 cd03214 ABC_Iron-Siderophores_ 97.1 0.00053 1.1E-08 43.3 3.2 22 14-35 27-48 (180)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.3e-35 Score=184.91 Aligned_cols=108 Identities=32% Similarity=0.599 Sum_probs=103.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
+...+.|||+++|++|||||||+.||..+.|.+.+..|++ ++....+.++++.+++++|||+||++|+.+...||++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 4677899999999999999999999999999999999999 777888999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
++|+|||+|+.+||+++..|++++.++..
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~ 112 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYAS 112 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhcc
Confidence 99999999999999999999999999854
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.4e-33 Score=175.24 Aligned_cols=105 Identities=31% Similarity=0.618 Sum_probs=99.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
..++||+++|+.+||||||+.||..+.|.+...+|++ .++.+.+.+++..++|+||||+||++|.++.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4689999999999999999999999999998899999 777889999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+|||+++.+||..++.|++++.+..+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~ 108 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS 108 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998654
No 3
>KOG0080|consensus
Probab=100.00 E-value=4.7e-32 Score=164.58 Aligned_cols=109 Identities=29% Similarity=0.506 Sum_probs=102.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
+.....+||++||++|||||||+.||..+.|.+..+.+++ ++..+...+++..+++.+|||+||++|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 4566789999999999999999999999999998888888 777888899999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhcC
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVKDK 115 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~~~ 115 (115)
++|+|||++.+++|.++..|++++..|+.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn 115 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTN 115 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCC
Confidence 999999999999999999999999988653
No 4
>KOG0094|consensus
Probab=100.00 E-value=3e-32 Score=169.84 Aligned_cols=107 Identities=32% Similarity=0.560 Sum_probs=101.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+|++++|+.+||||||+.||+.+.|...|.+|++ ++..+...+.+..+.|++|||+||++|+++.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 455679999999999999999999999999999999999 7778889999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+|+|||++|..||++...|++++++.++
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~g 125 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERG 125 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998765
No 5
>KOG0078|consensus
Probab=99.98 E-value=2.2e-31 Score=167.82 Aligned_cols=107 Identities=35% Similarity=0.590 Sum_probs=103.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++||++||||+++.||..+.|...+.+|++ ++..+.+.+++..+.+++|||+||++|..+...||++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 677899999999999999999999999999999999999 7778999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
++||||+++..||+++..|++.|.++.+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~ 115 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHAS 115 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999865
No 6
>KOG0079|consensus
Probab=99.98 E-value=4.7e-32 Score=162.70 Aligned_cols=107 Identities=33% Similarity=0.592 Sum_probs=101.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
...+.+|.+|+||+|||||+|+.||..+.|+..|..|++ ++....+.+++..++|+|||++|+++|+.+...|+++.++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 345678999999999999999999999999999999999 7778889999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+|+|||+++.+||.+++.|+++|++.++
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd 111 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD 111 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc
Confidence 9999999999999999999999998765
No 7
>KOG0394|consensus
Probab=99.97 E-value=1.2e-31 Score=165.68 Aligned_cols=106 Identities=34% Similarity=0.594 Sum_probs=100.8
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
+...+||+++|++|||||||+++|.+.+|...+..|++ ++..+.+.+++..+.+++|||+||++|.++...+|+++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 45679999999999999999999999999999999999 77789999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+++||+++++||++|..|.+++..+.+
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcC
Confidence 999999999999999999999988754
No 8
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=4.2e-30 Score=162.78 Aligned_cols=105 Identities=25% Similarity=0.436 Sum_probs=98.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+...+||+++|++|||||||+.+|..+.|.+.+.|+.+..+...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 45679999999999999999999999999999999999777777888999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
+|||+++++||+++ ..|++++.++.
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~ 107 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC 107 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999999997 89999998764
No 9
>KOG0087|consensus
Probab=99.97 E-value=1.3e-30 Score=164.21 Aligned_cols=109 Identities=30% Similarity=0.505 Sum_probs=103.8
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
+....+.|||+++||+|||||-|+.||..+.|..+..+|++ ++....+.++++.++.+||||+||++|+.+...||+++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46778899999999999999999999999999999999999 77788899999999999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
.+++||||+++..+|+++..|+++++.+.+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad 117 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD 117 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999875
No 10
>KOG0095|consensus
Probab=99.97 E-value=2.6e-30 Score=155.66 Aligned_cols=106 Identities=31% Similarity=0.548 Sum_probs=101.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....|||+++|+.|||||+|++||..+-|++....+++ ++..+.+.+++..+++++|||+||++|+++...||+.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45679999999999999999999999999999999999 77799999999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
||+||++=..||+-+.+|+.+|.+|..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 11
>KOG0098|consensus
Probab=99.97 E-value=5.9e-30 Score=158.58 Aligned_cols=105 Identities=30% Similarity=0.508 Sum_probs=99.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
..+.+|++++||.|||||+|+.||....|.+.+..|.+ ++-...+.++++.++|++|||+|++.+.+....||+++.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 34689999999999999999999999999999999999 44467789999999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||||+++++||++|..|+.+++++.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~ 108 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHS 108 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999984
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=7.8e-30 Score=160.79 Aligned_cols=101 Identities=37% Similarity=0.595 Sum_probs=94.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||+.+|..+.|..++.+|.++.+...+..++..+.+++|||+|+++|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 79999999999999999999999999999999997777777888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhhh
Q psy9154 93 VTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
+++++||+++ +.|++++.++.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~ 103 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA 103 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999998 78999998764
No 13
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=9e-30 Score=160.79 Aligned_cols=103 Identities=24% Similarity=0.438 Sum_probs=95.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
++||+++|++|||||||+++|.++.|...+.++.++.+...+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999998777777888999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHhhhc
Q psy9154 92 SVTDQQSYENI-KHFYTQILRVKD 114 (115)
Q Consensus 92 d~~~~~s~~~~-~~~~~~i~~~~~ 114 (115)
|+++++||+++ ..|++++.++.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~ 104 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP 104 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC
Confidence 99999999996 899999988653
No 14
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=1.6e-29 Score=161.14 Aligned_cols=102 Identities=34% Similarity=0.600 Sum_probs=94.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|+++||||||+.||..+.|.+.+.++.++.+...+.+++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 46899999999999999999999999999999999877766677889999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 91 YSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
||+++++||+++. .|++++.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~ 104 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH 104 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999996 699888764
No 15
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.9e-29 Score=163.89 Aligned_cols=107 Identities=22% Similarity=0.393 Sum_probs=98.7
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.+....+||+++|++|||||||+.+|..+.|...+.++.+..+...+.+++..+.+++|||+|+++|..+++.+++++|+
T Consensus 8 ~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred cCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 35567899999999999999999999999999999999987777778889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
+|+|||+++++||+++ ..|++++.++.
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~ 115 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC 115 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC
Confidence 9999999999999984 89999998764
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=5.6e-29 Score=159.87 Aligned_cols=101 Identities=25% Similarity=0.549 Sum_probs=93.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+.|+++|++|||||||++||..+.|...+.++.+ +++.+.+.+++..+.+++||++|+++|..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999998999988 555667888999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+++++||+++..|++.+.++.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~ 102 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYA 102 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987754
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1e-28 Score=157.22 Aligned_cols=104 Identities=26% Similarity=0.396 Sum_probs=94.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+||+++|++|||||||+.+|..+.|...+.++.+ +.....+.+++..+.+++||++|+.+|..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999999999888888877 444566778899999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||+++++||+++..|++++.++.
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~ 108 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA 108 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 18
>KOG0086|consensus
Probab=99.96 E-value=6.5e-29 Score=150.07 Aligned_cols=108 Identities=30% Similarity=0.485 Sum_probs=100.5
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
+...+.+|++++|++|+|||+|+++|+.++|.....++++ ++-...+.++++.++++||||+||++|++....||+++.
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 4567789999999999999999999999999999999999 555778899999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+.+||||+++++||+++..|+.+++...+
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs 112 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLAS 112 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999987643
No 19
>KOG0093|consensus
Probab=99.96 E-value=8.3e-29 Score=148.57 Aligned_cols=107 Identities=27% Similarity=0.525 Sum_probs=99.1
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
+.-...+|+.++|++.||||||+.|+.+..|.+.+..|++ ++..+.+.-..+.+++++|||+|+++|+.+...|+++++
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 4566788999999999999999999999999999999999 666777777889999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|||||++|.+||..++.|...|..++
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktys 123 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYS 123 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeee
Confidence 9999999999999999999999987653
No 20
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=2.7e-28 Score=153.63 Aligned_cols=102 Identities=35% Similarity=0.573 Sum_probs=93.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||+.+|.++.|...+.|+.++.+...+.+++..+.+++||++|++++..++..+++++|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999989999998777666778899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhhh
Q psy9154 92 SVTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
|+++++||+++. .|+.++.++.
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~ 103 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC 103 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999996 5999887654
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=4e-28 Score=153.74 Aligned_cols=101 Identities=21% Similarity=0.401 Sum_probs=93.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++||+++.|.+.+.+|.+ +.+.+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988999998 444567888899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+++++||+++..|+.++.+..
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~ 102 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN 102 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4e-28 Score=155.82 Aligned_cols=100 Identities=22% Similarity=0.393 Sum_probs=89.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeC-----CeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVD-----DVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
+||+++|++|||||||+++++++.|...+.+|++. ...+.+.++ ++.+.+++||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888899883 334444443 567899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||+++++||+++..|+.++.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNK 106 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 23
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=3.9e-28 Score=157.79 Aligned_cols=102 Identities=24% Similarity=0.435 Sum_probs=93.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
++||+++|++|||||||+.+|..+.|...+.||.++.+...+.+++..+.|++|||+|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999999999999999777777788999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHH-HHHHHHHHhhh
Q psy9154 92 SVTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
|+++++||+++ ..|..++.+..
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~ 103 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC 103 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999 56887776543
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=1.3e-27 Score=150.04 Aligned_cols=101 Identities=53% Similarity=0.912 Sum_probs=94.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||++++..+.|...+.++.+..+...+.+++..+.+++||++|+.++..++..+++.+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 48999999999999999999999999888889988777777788999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+++++||+.+.+|+..+.+.
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~ 102 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRV 102 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHh
Confidence 999999999999999888775
No 25
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=2e-27 Score=147.25 Aligned_cols=102 Identities=58% Similarity=1.037 Sum_probs=94.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||+++++.+.|...+.++.++.+...+..++..+.+++||++|++++..++..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999999888888888777777788899999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+.+..|++.+.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~ 102 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVK 102 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=3e-27 Score=147.33 Aligned_cols=102 Identities=34% Similarity=0.589 Sum_probs=92.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+||+++|++|||||||++++.++.|...+.++.+..+ ...+..++..+.+++||++|+.++..++..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888887444 45667888899999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||+++++||+++..|++++.+..
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~ 104 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT 104 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987653
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3.5e-27 Score=153.27 Aligned_cols=105 Identities=30% Similarity=0.515 Sum_probs=95.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
++..+||+++|++|||||||+++++.+.|...+.++.+ +.....+..++..+.+++||++|+.+|..++..++++++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 47889999999999999999999999999988999988 44455566777889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||+++++||+++..|++++.+..
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~ 115 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC 115 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=3.8e-27 Score=149.89 Aligned_cols=103 Identities=65% Similarity=1.067 Sum_probs=96.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+||+++|++|||||||++++.++.|...+.++.+..+...+.+++..+.+++|||+|++++..++..++++++++|+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45799999999999999999999999998888898887777777888999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||+++++||+.+..|+..+.++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~ 105 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRV 105 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998775
No 29
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.9e-27 Score=148.78 Aligned_cols=101 Identities=35% Similarity=0.600 Sum_probs=92.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||+.+++.+.|..++.++..+.+...+..++..+.+.+|||+|+.++..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999988776667778888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhh
Q psy9154 92 SVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|+++++||+++. .|+..+.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~ 102 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH 102 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999995 699888764
No 30
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=3e-27 Score=146.48 Aligned_cols=101 Identities=39% Similarity=0.718 Sum_probs=95.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
||+++|+++||||||+++|.++.|.+.+.++.+ +.+...+..++..+.+++||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999986 6677888899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhc
Q psy9154 93 VTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+++++||+++..|++.+.++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~ 102 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP 102 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999998754
No 31
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=4.8e-27 Score=147.28 Aligned_cols=100 Identities=32% Similarity=0.546 Sum_probs=92.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.||+++|++|||||||+++|+++.|...+.++.+ +.....+.+++..+.+++||++|+.+|..++..+++++|++++||
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 3899999999999999999999999999999988 444566778888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++|+.+..|++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~ 101 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKE 101 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 32
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=5.2e-27 Score=145.61 Aligned_cols=101 Identities=51% Similarity=0.946 Sum_probs=94.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
++||+++|++|||||||+++++.+.+.+.+.++..+.+...+.+++..+.+++||++|++++..++..+++++|++|+||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999988888887777777888888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+++++||+++..|+..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~ 101 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRV 101 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.7e-27 Score=150.72 Aligned_cols=100 Identities=32% Similarity=0.552 Sum_probs=91.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
+||+++|++|||||||+++|.++.|...+.++.+ +.....+.++ +..+.+++||++|++++..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 6999999999999999999999999888889988 4445666777 7889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
||+++++||+++..|+.++.+.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~ 102 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSK 102 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 34
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=9e-27 Score=144.75 Aligned_cols=101 Identities=58% Similarity=1.046 Sum_probs=94.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
++||+++|++|||||||+++++.+.+...+.++.+..+...+..++..+.+++|||+|+.++..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888888777777788888999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++|+.+..|+..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~ 101 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRV 101 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999865
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=1.3e-26 Score=143.96 Aligned_cols=101 Identities=31% Similarity=0.586 Sum_probs=93.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||+++++++.+...+.++.+ +.....+..++..+.+++|||+|+..+..++..+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988888888 444666778889999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+.+..|+.++.++.
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~ 102 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEG 102 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhc
Confidence 9999999999999999998764
No 36
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=1.4e-26 Score=144.49 Aligned_cols=103 Identities=35% Similarity=0.600 Sum_probs=93.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+.+||+++|+++||||||++++.++.|...+.++.+. .....+..++..+.+++||++|+.++..++..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999999999988888884 445567778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||+++++||+.+..|+..+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~ 105 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA 105 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC
Confidence 999999999999999999998763
No 37
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=7.7e-27 Score=148.58 Aligned_cols=100 Identities=58% Similarity=1.007 Sum_probs=92.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||+++|..+.|...+.++.++.+...+.+++..+.+++|||+|+.+|..++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 69999999999999999999999988888998877766677888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q psy9154 94 TDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~~ 113 (115)
++++||+.+..|++.+.+..
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~ 100 (190)
T cd04144 81 TSRSTFERVERFREQIQRVK 100 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.95 E-value=1.2e-26 Score=144.22 Aligned_cols=101 Identities=31% Similarity=0.624 Sum_probs=92.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++.++.|.+.+.++.+ +.....+.+++..+.+++||++|+.++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888888 444566778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+++++||+.+..|++++.++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~ 102 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA 102 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988754
No 39
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=8.1e-27 Score=157.36 Aligned_cols=106 Identities=17% Similarity=0.333 Sum_probs=94.7
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeC-------------CeEEEEEEEeCCCccch
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVD-------------DVMCILDVLDTAGQEEF 73 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~l~~~d~~g~~~~ 73 (115)
.....+||+++|+.|||||||+++|+++.|...+.+|++. ...+.+.++ +..+.++|||++|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 4667899999999999999999999999999888899884 445555554 35688999999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
..++..|+++++++|+|||+++++||+++..|++++.++.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~ 136 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATG 136 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998763
No 40
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=2.5e-26 Score=148.94 Aligned_cols=113 Identities=30% Similarity=0.509 Sum_probs=100.2
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHH
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQ 79 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 79 (115)
|+..........+||+++|++|||||||+++|.++.+...+.++.+ +.....+.+++..+.+++||++|+.++..+...
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 4455555566789999999999999999999999999888888887 444667788888999999999999999999999
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++.++++|+|||++++++|+++..|+..+.++.
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~ 114 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA 114 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988764
No 41
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=2.2e-26 Score=142.13 Aligned_cols=102 Identities=61% Similarity=1.034 Sum_probs=94.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
++||+++|++|||||||++++.++.|...+.++.++.+...+.+++..+.+++||++|++++..++..+++.++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999999888888888777777788888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+++..|+..+.+..
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~ 102 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVK 102 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 42
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=2.2e-26 Score=142.91 Aligned_cols=100 Identities=28% Similarity=0.536 Sum_probs=90.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++..+.|.+.+.++.+ ..+......++..+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999887777766 444555667888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++.+++++..|+.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~ 101 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY 101 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999765
No 43
>KOG0088|consensus
Probab=99.95 E-value=5.8e-28 Score=146.68 Aligned_cols=108 Identities=29% Similarity=0.546 Sum_probs=99.8
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.-+...||++++|..-||||||+-||+.++|...+.+|.. .+..+.+.+.+....++||||+||++|..+-+.||++++
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 4566789999999999999999999999999988888877 666888889999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+++||||++|++||+.++.|..+++...+
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlG 116 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLG 116 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988654
No 44
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=2.9e-26 Score=142.82 Aligned_cols=101 Identities=27% Similarity=0.541 Sum_probs=91.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++.++.|...+.++.+. .....+..++..+.+++||++|+.++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888874 34455667788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+++..|++++.++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~ 103 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS 103 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 45
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.95 E-value=3.5e-26 Score=142.81 Aligned_cols=105 Identities=32% Similarity=0.555 Sum_probs=94.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.+..+||+++|+++||||||++++.++.+.+.+.++.+ +.....+..++..+.+++||++|++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999999888777777 44456677889999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|||+++++||+.+..|+.++.++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYA 107 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhc
Confidence 99999999999999999999987653
No 46
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.95 E-value=3.1e-26 Score=144.24 Aligned_cols=102 Identities=27% Similarity=0.492 Sum_probs=90.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeC----------CeEEEEEEEeCCCccchhhhHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVD----------DVMCILDVLDTAGQEEFSAMREQ 79 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~l~~~d~~g~~~~~~~~~~ 79 (115)
+.+||+++|++|||||||++++.++.|.+.+.++.+. .....+... +..+.+++||++|+.++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 5699999999999999999999999999988888883 334444433 45688999999999999999999
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++++|++|+|||+++++||.++..|+.++.+.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 115 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH 115 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998775
No 47
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=1.9e-26 Score=152.13 Aligned_cols=100 Identities=38% Similarity=0.637 Sum_probs=93.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||+++|+++.|...+.++.++.+.+.+.+++..+.++||||+|+..|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888899887777778889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++++||+++..|+++|.+.
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~ 100 (247)
T cd04143 81 LDNRESFEEVCRLREQILET 100 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999865
No 48
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=4.9e-26 Score=145.87 Aligned_cols=104 Identities=34% Similarity=0.592 Sum_probs=93.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+||+++|++|||||||+++|.++.|...+.++.+ +.....+.+++..+.+.+||++|+..+..++..++++++++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3579999999999999999999999999888888887 444566677888889999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||+++++||+.+..|++.+....
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~ 108 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC 108 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=3.4e-26 Score=148.21 Aligned_cols=101 Identities=33% Similarity=0.585 Sum_probs=92.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCC-eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDD-VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
+||+++|+++||||||+++|.++.|...+.++.+ +.+...+.+.+ ..+.+++||++|+..+..+...+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999988 66666677654 578999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||+++++||+++..|+..+.++.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~ 103 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVL 103 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998763
No 50
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=6.3e-26 Score=141.21 Aligned_cols=102 Identities=37% Similarity=0.674 Sum_probs=92.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+++||++|+.++..++..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888888877 44456677788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||+++++||+++..|+.++.+..
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~ 104 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA 104 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC
Confidence 99999999999999999998754
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=2.5e-26 Score=146.13 Aligned_cols=100 Identities=34% Similarity=0.543 Sum_probs=91.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||+++|.++.|...+.++.+..+...+..++..+.+++||++|++.+..++..+++.++++|+|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999998888998877766677788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhhh
Q psy9154 94 TDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 94 ~~~~s~~~~~-~~~~~i~~~~ 113 (115)
++++||+++. .|+..+.++.
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~ 102 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHC 102 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 9999999996 6999988653
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=4.6e-26 Score=147.29 Aligned_cols=102 Identities=32% Similarity=0.587 Sum_probs=91.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEe-CCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEV-DDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
++||+++|++|||||||++++.++.+...+.++.+ +.+...+.+ ++..+.+++||++|++.+..+...+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 68999999999999999999999999888888887 555555655 4677899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||+++++||+++..|++++.+..
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~ 105 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHI 105 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998753
No 53
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.94 E-value=5.7e-26 Score=140.97 Aligned_cols=100 Identities=73% Similarity=1.175 Sum_probs=93.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++.++.+...+.++..+.+......++..+.+++||++|++++..++..+++.++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999998888888887777777788889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
++++++|+.+..|+..+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~ 100 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRV 100 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.94 E-value=6.5e-26 Score=141.22 Aligned_cols=101 Identities=44% Similarity=0.774 Sum_probs=92.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++.++.|...+.++.+..+......+...+.+++||++|+.++..++..+++.++++|+|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888887666666777888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q psy9154 93 VTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++++||+++..|++.+.+..
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~ 102 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIK 102 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887753
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=4.6e-26 Score=142.29 Aligned_cols=101 Identities=30% Similarity=0.539 Sum_probs=91.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||+++++.+.+...+.++.+ +.....+..++..+.+++|||+|++++..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5999999999999999999999999888888887 444455566788899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+++++||++++.|++++.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~ 102 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC 102 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 56
>KOG0393|consensus
Probab=99.94 E-value=1e-27 Score=151.41 Aligned_cols=105 Identities=35% Similarity=0.553 Sum_probs=99.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+..+||++|||.++|||+|+..+..+.|+..|.||+.+.+...+.++ ++.+.+.+|||+||++|..+++..|.++|+|+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 45799999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhhhc
Q psy9154 89 LVYSVTDQQSYENI-KHFYTQILRVKD 114 (115)
Q Consensus 89 l~~d~~~~~s~~~~-~~~~~~i~~~~~ 114 (115)
+||++.+++||+++ ..|+.+++++++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp 108 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP 108 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC
Confidence 99999999999997 679999999874
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.3e-25 Score=139.70 Aligned_cols=102 Identities=27% Similarity=0.561 Sum_probs=92.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|++|||||||++++..+.+...+.++.+ +.....+..++..+.+++||+||+.++..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 469999999999999999999999999888777776 4445667788888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||+++++||+.+..|+..+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~ 104 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY 104 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh
Confidence 99999999999999999999875
No 58
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=9.7e-26 Score=143.16 Aligned_cols=101 Identities=38% Similarity=0.664 Sum_probs=91.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++.++.|...+.++.+ +.....+.+++..+.+++||++|+.++..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999877888887 444566778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+++++||+++..|++++.++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~ 102 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA 102 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 59
>KOG0091|consensus
Probab=99.94 E-value=6.6e-27 Score=142.59 Aligned_cols=105 Identities=31% Similarity=0.543 Sum_probs=94.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEe-CCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEV-DDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
-.+++++++|||+-||||||+++|..++|.+-..||++ +++...+.+ .+..++|++|||+||++|+++...||+++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 35689999999999999999999999999988889999 665544444 4778999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++++||++|++||+++..|+.+...+-
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~ 111 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMAT 111 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999987653
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.94 E-value=1.9e-25 Score=138.43 Aligned_cols=101 Identities=74% Similarity=1.139 Sum_probs=93.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|+++||||||+++++++.+...+.++..+.+...+.+++..+.+++|||||+.++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999999888888888766667778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++|+.+..|+..+.+.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~ 102 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRV 102 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 61
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=6.4e-26 Score=142.26 Aligned_cols=100 Identities=35% Similarity=0.557 Sum_probs=91.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++.++.|..++.++..+.+...+.+++..+.+++||++|+.++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999999999999989998877777777888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhh
Q psy9154 93 VTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~-~~~~~i~~~ 112 (115)
+++++||+++. .|+..+.+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~ 101 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH 101 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999984 799888764
No 62
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1e-25 Score=142.72 Aligned_cols=100 Identities=32% Similarity=0.573 Sum_probs=89.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++.++.|...+.++.+..+...+... +..+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888886665556655 77889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhh
Q psy9154 92 SVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|+++++||+++. .|+..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~ 102 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF 102 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999996 599888654
No 63
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.94 E-value=1.4e-25 Score=138.85 Aligned_cols=100 Identities=36% Similarity=0.567 Sum_probs=89.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeC--CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVD--DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+||+++|+++||||||++++.++.+...+.++.+. .....+.+. +..+.+++||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999998888888874 334555666 778899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+..+.+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~ 103 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE 103 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 64
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.94 E-value=2.2e-25 Score=138.50 Aligned_cols=103 Identities=32% Similarity=0.548 Sum_probs=93.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|+++||||||++++.++.+...+.++.+ +.....+..++..+.+++||++|+.++..++..+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999999888888887 4446667788888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++|+++..|+.++.+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~ 105 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA 105 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=2.2e-25 Score=138.03 Aligned_cols=101 Identities=30% Similarity=0.529 Sum_probs=91.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.++.+...+.++.+ +.....+.+++..+.+++||++|+.++..++..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888888877 444556677888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+++..|+.++....
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~ 102 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA 102 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 66
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=1.2e-25 Score=140.86 Aligned_cols=99 Identities=38% Similarity=0.645 Sum_probs=90.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT 94 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~ 94 (115)
|+++|++|||||||+++|.++.|...+.++....+...+..++..+.+++|||+|++++..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888888777777788899999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HHHHHHHhhh
Q psy9154 95 DQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 95 ~~~s~~~~~-~~~~~i~~~~ 113 (115)
+++||+++. .|++.+.++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~ 100 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC 100 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC
Confidence 999999996 5999988753
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=3.6e-25 Score=138.26 Aligned_cols=103 Identities=31% Similarity=0.527 Sum_probs=92.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|+++||||||++++.++.+...+.++.+ +.....+..++..+.+.+||++|++++..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999999888777777 4445666778888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||+++++||+.+..|+.++.++.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~ 106 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS 106 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=2.9e-25 Score=138.92 Aligned_cols=102 Identities=29% Similarity=0.507 Sum_probs=91.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh-hhHHHHhhcCCEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS-AMREQYMRKGDGFLL 89 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~~~~~~~~il 89 (115)
.+||+++|++|||||||++++..+.+...+.++.+ +.....+.+++..+.+++||++|+.++. .+...+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999999888888877 4445667788889999999999999886 578889999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||+++++||+.+..|++++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~ 105 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHS 105 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhc
Confidence 999999999999999999988753
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=1.5e-25 Score=143.79 Aligned_cols=96 Identities=28% Similarity=0.501 Sum_probs=88.5
Q ss_pred ECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 18 VGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 18 ~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
+|++|||||||+++|+.+.|...+.++.+ +.....+.+++..+.+++|||+|+++|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888889987 55566677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9154 97 QSYENIKHFYTQILRVK 113 (115)
Q Consensus 97 ~s~~~~~~~~~~i~~~~ 113 (115)
+||+++..|++++.++.
T Consensus 81 ~S~~~i~~w~~~i~~~~ 97 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC 97 (200)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998864
No 70
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=2.9e-25 Score=141.36 Aligned_cols=101 Identities=27% Similarity=0.538 Sum_probs=90.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
+||+++|+++||||||+++|.++.|.. .+.++.+..+ ...+.+++..+.+++||++|+.++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999974 5777877544 55678889999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||++++++|+++..|++.+.+..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~ 103 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE 103 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999987753
No 71
>KOG0083|consensus
Probab=99.94 E-value=1.9e-27 Score=140.99 Aligned_cols=98 Identities=29% Similarity=0.563 Sum_probs=90.7
Q ss_pred EEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 16 VVVGDGGVGKSAITIQFFQKLFVT-DYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 16 ~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
+++|++++|||+|+-||..+.|.. +..++++ ++..+.+.+++..+++++|||+||++|++....||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 478999999999999999998874 5678888 66677889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q psy9154 94 TDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|..||++++.|+.+|.+|.
T Consensus 81 ankasfdn~~~wlsei~ey~ 100 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA 100 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999885
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=3.8e-25 Score=137.28 Aligned_cols=95 Identities=23% Similarity=0.399 Sum_probs=83.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||+.+++.+.|.+.+.++.+ .+...+.+++..+.+++||++|+.. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 5899999999999999999999999877666544 3456678899999999999999975 346789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q psy9154 93 VTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++++||+++..|++++.+++
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~ 95 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYR 95 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=5.5e-25 Score=137.39 Aligned_cols=101 Identities=55% Similarity=0.989 Sum_probs=93.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+++||++|+.+|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999999999888888888777777788888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++++.+..|.+.+.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~ 101 (168)
T cd04177 81 SVTSEASLNELGELREQVLRI 101 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=7e-25 Score=135.63 Aligned_cols=101 Identities=32% Similarity=0.542 Sum_probs=91.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.+..+...+.++.+ +.....+.+++..+.+++||+||+.++..+...+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999887777777 555667778888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+.+..|+..+.+..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~ 102 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER 102 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=1.1e-24 Score=138.74 Aligned_cols=101 Identities=33% Similarity=0.631 Sum_probs=89.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
+||+++|+++||||||++++..+.+.. .+.++.+ +.....+.+++..+.+++||++|+.++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 5667776 43344567888899999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||+++++||+++..|+..+.+..
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~ 103 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA 103 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 76
>KOG0097|consensus
Probab=99.93 E-value=3.3e-25 Score=132.77 Aligned_cols=111 Identities=35% Similarity=0.535 Sum_probs=100.4
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHH
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQ 79 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 79 (115)
|+..| -...+.||.+++|+.|||||+|++.|...+|....+++++. +-...+.+.++.+++++|||+||++|+.....
T Consensus 1 m~~~p-ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 1 MTAAP-YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred CCCCc-cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHH
Confidence 44555 34567899999999999999999999999999999999994 44667889999999999999999999999999
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
||+++.+.++|||++++++++++..|+.+.++.
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~l 112 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNL 112 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhcc
Confidence 999999999999999999999999999987764
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=9.6e-25 Score=136.69 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=90.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
...+||+++|++|||||||+++|+++.|. ..+.+|.+..+ ...+.+++..+.+.+||++|+..+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 34799999999999999999999999998 88888888544 45677788888999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
++|||++++++|+.+..|++.+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~ 104 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYF 104 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 78
>PLN03108 Rab family protein; Provisional
Probab=99.93 E-value=2.2e-24 Score=139.30 Aligned_cols=103 Identities=31% Similarity=0.526 Sum_probs=92.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|++|||||||++++....|...+.++.+ +.....+.+++..+.+++||++|+..+..++..+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 469999999999999999999999999888788877 4445567788888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++|+++..|+..+.++.
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~ 108 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA 108 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887653
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.93 E-value=1.8e-24 Score=134.27 Aligned_cols=101 Identities=33% Similarity=0.511 Sum_probs=88.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC--CCCCCCCCCcc-eeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK--LFVTDYDPTIE-DSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+||+++|++|||||||++++..+ .|.+++.++.+ +.....+.+. +..+.+.+||++|+..+..+...+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 68788888887 4444455554 57789999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||++++++|+.+..|++.+.+..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS 105 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987753
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.93 E-value=2.7e-24 Score=133.26 Aligned_cols=102 Identities=30% Similarity=0.582 Sum_probs=92.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
++||+++|+++||||||++++.++.+...+.++.+. .....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999999998777777774 4466778889999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||.+++++|+.++.|+..+.+..
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~ 103 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA 103 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987753
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.93 E-value=1.4e-24 Score=135.05 Aligned_cols=100 Identities=40% Similarity=0.727 Sum_probs=88.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-hhhhHHHHhhcCCEEEEEEe
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-FSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~~~~~il~~d 92 (115)
||+++|++|||||||+++++.+.|...+.++....+.....+++..+.+++||++|+.. .......+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 69999999999999999999999988888887755666677888999999999999885 34566778999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q psy9154 93 VTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++++||+.+..|+..+.+..
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~ 101 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIK 101 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=3.7e-24 Score=132.58 Aligned_cols=101 Identities=37% Similarity=0.646 Sum_probs=90.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.+..+...+.++.+ +.....+..++..+.+++||++|+.++..+...+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 6999999999999999999999998777777777 344556677888889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++.+++.+..|+..+.++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~ 102 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA 102 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
No 83
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=1.6e-24 Score=135.69 Aligned_cols=100 Identities=33% Similarity=0.582 Sum_probs=91.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++..+.|...+.++..+.+...+.+++..+.+++||++|+..+..++..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877666677788888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhh
Q psy9154 93 VTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~-~~~~~i~~~ 112 (115)
++++++|+.+. .|++.+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~ 101 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY 101 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999995 688888764
No 84
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=2.1e-24 Score=135.29 Aligned_cols=101 Identities=34% Similarity=0.547 Sum_probs=90.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+.||+++|++|||||||++++.++.|...+.++....+...+.+++..+.+.+|||+|++++..++..++.++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36999999999999999999999999888888888766666778888899999999999999999888999999999999
Q ss_pred eCCCHHHHHHHH-HHHHHHHhh
Q psy9154 92 SVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|++++++|+++. .|+..+.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~ 102 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF 102 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh
Confidence 999999999995 688888764
No 85
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=8.1e-24 Score=136.97 Aligned_cols=107 Identities=31% Similarity=0.550 Sum_probs=95.0
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
......+||+++|++|||||||+++++.+.+...+.++.+ +.....+..++..+.+++||++|+.++..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3566679999999999999999999999999888889988 444455566788899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++.||.++..|+..+.+..
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 111 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC 111 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987653
No 86
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=3.1e-24 Score=137.29 Aligned_cols=100 Identities=32% Similarity=0.432 Sum_probs=80.7
Q ss_pred eeeEEEECCCCCcHHHHHH-HHHhCC-----CCCCCCCCcc--eeEEEE--------EEeCCeEEEEEEEeCCCccchhh
Q psy9154 12 TYKLVVVGDGGVGKSAITI-QFFQKL-----FVTDYDPTIE--DSYLQH--------TEVDDVMCILDVLDTAGQEEFSA 75 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~-~~~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~l~~~d~~g~~~~~~ 75 (115)
.+||+++|++|||||||+. ++.++. |...+.||.+ +.+... ..+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 665543 4566778875 333322 25688899999999999875 3
Q ss_pred hHHHHhhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHhhh
Q psy9154 76 MREQYMRKGDGFLLVYSVTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 76 ~~~~~~~~~~~~il~~d~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
++..+++++|++|+|||+++++||+++. .|++++.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~ 118 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC
Confidence 5667899999999999999999999997 6999987754
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.92 E-value=1.1e-23 Score=130.36 Aligned_cols=101 Identities=32% Similarity=0.573 Sum_probs=90.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.+..+...+.++.+. .....+..++..+.+++||++|+..+..+...+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999999987777777774 33455667778889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++|+.+..|++.+.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~ 102 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYS 102 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhC
Confidence 9999999999999999998764
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.92 E-value=1.2e-23 Score=131.30 Aligned_cols=100 Identities=35% Similarity=0.631 Sum_probs=89.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.+..+...+.++.+ +.....+.+.+..+.+++||+||+..+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777777 445566778888899999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++++++..|.+++.+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~ 101 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQ 101 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.92 E-value=1.7e-23 Score=129.15 Aligned_cols=101 Identities=28% Similarity=0.607 Sum_probs=89.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|++|||||||++++.++.+.+.+.++.. ......+...+..+.+++||++|+..+..+++.+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999998776666665 334555666778889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++++.+..|++++.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~ 102 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMR 102 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.1e-23 Score=134.87 Aligned_cols=100 Identities=39% Similarity=0.656 Sum_probs=91.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||+++++++.+...+.++..+.....+.+++..+.+++||++|+..+..++..++.++|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 79999999999999999999999988888887766666677888888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q psy9154 94 TDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++++|+.+..|+..+.+..
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~ 100 (198)
T cd04147 81 DDPESFEEVERLREEILEVK 100 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 91
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=9.3e-24 Score=135.36 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=85.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh--------hhHHHHhhc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS--------AMREQYMRK 83 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~~~~ 83 (115)
+||+++|+++||||||+++|.++.|...+.|+.+ +.+...+.+++..+.+++|||+|...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888877 4445566778888999999999965432 123456789
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 84 GDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 84 ~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|++|+|||+++++||+.+..|++.+.++.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~ 110 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETR 110 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988753
No 92
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.92 E-value=1.1e-23 Score=136.95 Aligned_cols=96 Identities=24% Similarity=0.445 Sum_probs=82.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|+++||||||+++|+.+.|.. +.++.+..+... . ...+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~--~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-Q--WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-E--eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999999975 566666332211 1 245789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++++||+++..|+..+.+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~ 96 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT 96 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999888764
No 93
>KOG0081|consensus
Probab=99.92 E-value=4.9e-26 Score=138.39 Aligned_cols=105 Identities=29% Similarity=0.494 Sum_probs=94.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC---------CeEEEEEEEeCCCccchhhhH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD---------DVMCILDVLDTAGQEEFSAMR 77 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~l~~~d~~g~~~~~~~~ 77 (115)
...+.+|.+.+||+||||||++.+|..++|.....++++ ++..+.+.++ ++.+.+++|||+||++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 345678999999999999999999999999999999999 5555655442 467899999999999999999
Q ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 78 EQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 78 ~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
..+++++-+++++||++++.||-+++.|+.+++-+
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h 119 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH 119 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998865
No 94
>PLN03118 Rab family protein; Provisional
Probab=99.91 E-value=3.8e-23 Score=133.55 Aligned_cols=104 Identities=31% Similarity=0.566 Sum_probs=88.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+. .+.++.+ +.....+..++..+.+.+|||+|++++..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 4445799999999999999999999998874 5566666 3445566778888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKH-FYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~-~~~~i~~~ 112 (115)
+|+|||++++++|+++.. |...+..+
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~ 115 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELY 115 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999976 66666543
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.91 E-value=4.3e-23 Score=127.69 Aligned_cols=100 Identities=53% Similarity=0.910 Sum_probs=93.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++....+...+.++..+.+......++..+.+++||++|+..+..++..+++.+++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 59999999999999999999999998888888887777777788889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
++++.+|+++..|+..+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~ 100 (164)
T cd04139 81 ITDMESFTATAEFREQILRV 100 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=8.5e-23 Score=127.26 Aligned_cols=104 Identities=29% Similarity=0.537 Sum_probs=92.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+||+++|++|||||||++++..+.+.+.+.++.+ +.....+.+.+..+.+++||++|+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3469999999999999999999999888777777776 555566778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||++++++++.+..|+.++....
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~ 109 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYA 109 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999887653
No 97
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=4.1e-23 Score=134.34 Aligned_cols=99 Identities=35% Similarity=0.569 Sum_probs=85.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhh-cCCEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMR-KGDGFLL 89 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~-~~~~~il 89 (115)
+||+++|++|||||||+++|..+.+. ..+.++.+ +.+...+.+++....+.+||++|+. ..+...++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 66777776 6667778888888999999999998 344556777 9999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||+++++||+.+..|+..+.+..
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~ 102 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNR 102 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 98
>KOG0395|consensus
Probab=99.91 E-value=1.3e-23 Score=134.22 Aligned_cols=104 Identities=64% Similarity=1.055 Sum_probs=99.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|.+|||||+|..+|+.+.|...|.|++++.+.+.+.+++..+.+.|+||+|+..+..+...++..++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
|+++++.||+.+..+++.|.+.++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~ 105 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKG 105 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999976554
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.91 E-value=2.2e-23 Score=129.98 Aligned_cols=96 Identities=17% Similarity=0.331 Sum_probs=84.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
.|+++|++|||||||++++.++.+...+.|+.+... ..++...+.+++||++|+.++..++..+++++|++|+|||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 379999999999999999999988888888877322 23455678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy9154 94 TDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~ 112 (115)
+++.+|+.++.|+.++.+.
T Consensus 78 t~~~s~~~~~~~l~~~~~~ 96 (164)
T cd04162 78 ADSERLPLARQELHQLLQH 96 (164)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999988653
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=3.2e-23 Score=129.72 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=81.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|+++||||||++++..+.+.. +.++.+..+. .+. ...+.+++||++|+.++..++..+++++|++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999888754 5666663322 222 2457899999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHh
Q psy9154 91 YSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~ 111 (115)
||++++.+|+++..|+.++.+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~ 104 (168)
T cd04149 84 VDSADRDRIDEARQELHRIIN 104 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhc
Confidence 999999999999998887764
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.91 E-value=3.6e-23 Score=128.38 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=80.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|+++||||||++++..+.+. .+.|+.+... ..+.. ..+.+++||++|+.++..++..+++++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999988886 4667766332 22232 45789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy9154 93 VTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~ 111 (115)
++++++|+++.+|+..+.+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~ 95 (159)
T cd04150 77 SNDRERIGEAREELQRMLN 95 (159)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999998888754
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=4.4e-23 Score=129.84 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=82.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+++||++|+.++..++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 34699999999999999999999988884 46677663332 2222 35789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
|||++++++++++..|+..+.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~ 108 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLN 108 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=9.5e-23 Score=127.10 Aligned_cols=100 Identities=24% Similarity=0.371 Sum_probs=83.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++..+.|...++++.. .+.....+++..+.+.+|||+|+..+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 4899999999999999999999999766544333 333444566788899999999999888887888899999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhhh
Q psy9154 93 VTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
+++++||+.+. .|++.+++..
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~ 101 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG 101 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999985 6888887653
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.90 E-value=1.6e-22 Score=123.87 Aligned_cols=101 Identities=34% Similarity=0.659 Sum_probs=90.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+++||||||++++.++.+...+.++.+ +.....+...+....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888777777 444566677778889999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++++++++.+..|+..+....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~ 102 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA 102 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
No 105
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.90 E-value=1.6e-22 Score=124.55 Aligned_cols=100 Identities=66% Similarity=1.035 Sum_probs=91.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||++++.++.+...+.++..+.+......++..+.+++||++|+..+..+...+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999999998888888888876677777777888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q psy9154 94 TDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++++++++..|+..+.+..
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~ 100 (160)
T cd00876 81 TDRESFEEIKGYREQILRVK 100 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888754
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.90 E-value=1.1e-22 Score=126.78 Aligned_cols=101 Identities=38% Similarity=0.591 Sum_probs=89.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++.++.+...+.++..+.+.......+..+.+++||+||+.++..++..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999997777787776666667778888999999999999998888889999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhhh
Q psy9154 93 VTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
++++++|..+ ..|+..+.++.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~ 102 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC 102 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC
Confidence 9999998887 45888777653
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=7.1e-23 Score=129.60 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=82.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|+++||||||++++..+.+. .+.|+.+.... .+ ....+.+++||++|+.++..++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999988885 45677763332 22 3345789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
|||++++++++.+..|+..+.+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~ 112 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLN 112 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999888887754
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.90 E-value=1.8e-22 Score=127.88 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=84.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEe-CCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEV-DDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
..+||+++|++|||||||++++..+.+... .++.+ ......+.. ++..+.+++|||+|++++..++..+++.+|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999999888654 55555 333333333 346788999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|||++++++++.+..|+.++.+.
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~ 104 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRF 104 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999888764
No 109
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.90 E-value=2.3e-22 Score=126.63 Aligned_cols=100 Identities=39% Similarity=0.674 Sum_probs=91.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
.||+++|++|||||||++++.++.+...+.++....+......++..+.+++||++|+.++..++..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999999988878888776666667778888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++.++|+.+..|+..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDM 101 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 110
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=2e-22 Score=127.98 Aligned_cols=101 Identities=33% Similarity=0.532 Sum_probs=89.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
.||+++|++|||||||++++..+.+.+.+.++....+...+..++..+.+.+||++|+..+..+...+++.+++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 69999999999999999999999888877777776666667778888899999999999988888888999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhhh
Q psy9154 93 VTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 93 ~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
++++++|+.+. .|++.+.++.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~ 103 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC 103 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999996 6999988653
No 111
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=2.6e-22 Score=118.77 Aligned_cols=99 Identities=29% Similarity=0.451 Sum_probs=75.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
||+++|++|||||||++++++..+. ..+.+..+ ...............+++||++|+..+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999886 12223333 33334556667776799999999999888878889999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
||+++++||+.+..|+..+.+.
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~ 102 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNI 102 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHH
T ss_pred EcCCChHHHHHHHHHHHHHHHH
Confidence 9999999999986655444443
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=1.2e-22 Score=128.61 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=82.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|+++||||||++++..+.+.. +.+|.+..+. .+. ...+.+++||++|+.++..++..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999888864 5667663332 222 3457899999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHh
Q psy9154 91 YSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~ 111 (115)
||++++++|+.+..|+..+.+
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~ 112 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLS 112 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHh
Confidence 999999999999988887754
No 113
>KOG4252|consensus
Probab=99.89 E-value=1.8e-24 Score=133.89 Aligned_cols=107 Identities=33% Similarity=0.511 Sum_probs=98.0
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
......+|++++|..+|||+|+++||+.+.|...+..+++ ++....+.++.+.+.+.+||++|+++|..+...||+++.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 4556689999999999999999999999999999999999 555666778888888999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+.+|||+-+|+.||+...+|++.+..-.
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKET 122 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988654
No 114
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=2.7e-22 Score=125.51 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=80.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|+++||||||++++.+..+.. +.+|.+.... .+ ....+.+++||++|+.++..++..+++.+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987754 6677663332 22 33457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy9154 94 TDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~ 112 (115)
+++++|+++..|+..+.+.
T Consensus 77 s~~~s~~~~~~~~~~~~~~ 95 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTE 95 (169)
T ss_pred CcHHHHHHHHHHHHHHhcC
Confidence 9999999999999998753
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.89 E-value=4.2e-22 Score=124.48 Aligned_cols=95 Identities=17% Similarity=0.329 Sum_probs=81.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
+|+++|+++||||||++++.+. +...+.++.+.. ...+.. ..+.+++||++|+..+..++..+++++|++|+|||.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 5899999999999999999976 767777887743 223333 456789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy9154 94 TDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~ 112 (115)
+++++|+.+..|+..+.+.
T Consensus 77 s~~~s~~~~~~~l~~l~~~ 95 (167)
T cd04161 77 SDDDRVQEVKEILRELLQH 95 (167)
T ss_pred CchhHHHHHHHHHHHHHcC
Confidence 9999999999999998764
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=1e-21 Score=123.17 Aligned_cols=101 Identities=17% Similarity=0.327 Sum_probs=83.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
...+..+||+++|++|||||||++++.+..+ ..+.++.+. ....+..+ .+.+++||++|+..+..++..+++++|+
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF-QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc-ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3456679999999999999999999998755 445566652 22333444 4678999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+++|||++++++|+.+..|+..+.+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQ 109 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 117
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=126.65 Aligned_cols=103 Identities=33% Similarity=0.535 Sum_probs=89.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEE-EEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQH-TEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|++|||||||++++.++.+.+.+.++.+..+... .......+++.+|||+|+.+++.++..|+.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 459999999999999999999999999999999988554433 3344448889999999999999999999999999999
Q ss_pred EEeCCC-HHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTD-QQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~-~~s~~~~~~~~~~i~~~~ 113 (115)
|||.++ ..+++....|++++...+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~ 108 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELA 108 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhC
Confidence 999999 667888899999988765
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=1.1e-21 Score=121.32 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=80.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC-CCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL-FVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+|+++|+++||||||++++.+.. +...+.++.+... ... ....+.+++||+||+.++..++..+++++|++|+|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999876 3556677776322 112 2345678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
++++.++..+..|+..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ 97 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNH 97 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999887653
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=6.1e-21 Score=119.90 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=82.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|+++||||||++++..+.+.. +.++.+..+. ....+ .+.+.+||++|+..+...+..+++++|++|+|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 36899999999999999999999988865 4566664332 22333 46799999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+++++++..+..|+..+.+.
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~ 111 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAH 111 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhc
Confidence 9999999999998888887654
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=2.3e-20 Score=115.31 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=79.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||++++.++.+.. ..++.+... ..+.. +..+.+.+||++|+..+..++..++..+|++|+|+|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 68999999999999999999998864 345555222 22232 3457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy9154 94 TDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~ 112 (115)
+++.++..+..|+.++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~ 96 (160)
T cd04156 78 SDEARLDESQKELKHILKN 96 (160)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 9999999999999888653
No 121
>KOG1673|consensus
Probab=99.85 E-value=1.6e-21 Score=118.34 Aligned_cols=108 Identities=19% Similarity=0.387 Sum_probs=98.8
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.+....+||.++||+.+|||||+-.|+++.+.+++..+.+. +..+.+.+.+..+.+.+||.+|++++..+.+..+.++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 36677999999999999999999999999998888888884 44778899999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
+++++||+++++++..+.+|+++.+..++
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~Nk 123 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNK 123 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999887653
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.85 E-value=3e-20 Score=114.86 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=75.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|+++||||||++++..+.+.. +.++.+.... .+ ....+.+++||++|+.++..++..+++.++++|+|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 79999999999999999998887754 4555553221 22 23456899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy9154 94 TDQQSYENIKHFYTQIL 110 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~ 110 (115)
+++.++..+..|+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (158)
T cd04151 77 TDRDRLGTAKEELHAML 93 (158)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999988777776554
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=8.1e-20 Score=111.96 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=81.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
.|+++|++|||||||++++.+..+...+.++.+..... +..++ +.+.+||++|+..+..++..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 37999999999999999999999988888887743332 33333 6899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy9154 94 TDQQSYENIKHFYTQILR 111 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~ 111 (115)
++++++..+..|+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (159)
T cd04159 78 ADRTALEAAKNELHDLLE 95 (159)
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 999999999888888754
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=5.1e-20 Score=113.63 Aligned_cols=95 Identities=21% Similarity=0.366 Sum_probs=78.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
||+++|++|||||||++++.++.+ ..+.++.+... ....+. ...+.+||+||+..+..++..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 799999999999999999998875 34455555222 223333 46789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy9154 94 TDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~~ 112 (115)
++++++..+..|+..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (158)
T cd00878 77 SDRERIEEAKEELHKLLNE 95 (158)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999888764
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=1.7e-19 Score=114.35 Aligned_cols=98 Identities=13% Similarity=0.265 Sum_probs=80.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|.+|||||||++++.++.+.. +.++.+... ..+..+ .+++.+||++|+..+..++..++.++|++|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 446999999999999999999999887753 344444221 222333 3678899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
|+|+++++++.....|+.++.+
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~ 112 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLS 112 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHc
Confidence 9999999999999999888765
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=2.3e-19 Score=113.89 Aligned_cols=99 Identities=15% Similarity=0.306 Sum_probs=82.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
....||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ ..+++||+||+..+..++..++++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 45799999999999999999999988774 455565532 22334444 568899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+|++++++|+....|+.++.+.
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~ 115 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSD 115 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888753
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=2.8e-19 Score=111.17 Aligned_cols=96 Identities=22% Similarity=0.350 Sum_probs=76.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC------CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF------VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
+|+++|++|||||||++++..... ...+.++.+... ..+.++ ...+.+||+||+..+..++..++..+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999976432 223344444222 223333 46789999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|+|.+++++++.+..|+..+.+.
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~ 102 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRN 102 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999887663
No 128
>KOG0073|consensus
Probab=99.80 E-value=1.1e-18 Score=106.55 Aligned_cols=98 Identities=18% Similarity=0.356 Sum_probs=80.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+..+++|.++|..++|||+++++|.+.. .....|+.+- ..+ ++..+.+.+++||.+||...++.|+.||..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf-~Ik--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGF-QIK--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccce-eeE--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 4559999999999999999999999776 3445555551 122 33445668999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHH
Q psy9154 89 LVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~ 110 (115)
.|+|.+|+..++....-++++.
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL 110 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELL 110 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHH
Confidence 9999999999888877666654
No 129
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.79 E-value=3.3e-18 Score=110.10 Aligned_cols=98 Identities=11% Similarity=0.218 Sum_probs=76.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC-CEEEEEEe
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG-DGFLLVYS 92 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~-~~~il~~d 92 (115)
+|+++|+++||||+|+.++..+.+...+.++............+....+++||+||+.+++.....+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998876655442221111111123456789999999999999999999999 99999999
Q ss_pred CCCH-HHHHHHHHHHHHHHh
Q psy9154 93 VTDQ-QSYENIKHFYTQILR 111 (115)
Q Consensus 93 ~~~~-~s~~~~~~~~~~i~~ 111 (115)
.++. +++..+..|+..+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~ 101 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILT 101 (203)
T ss_pred CccchhHHHHHHHHHHHHHH
Confidence 9997 788888887766543
No 130
>KOG0096|consensus
Probab=99.79 E-value=6e-19 Score=110.05 Aligned_cols=106 Identities=28% Similarity=0.507 Sum_probs=94.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEE-EeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+|++++|+.|.|||++++|.+.+.|+..+.++.+....... ..+...+++..|||.|++.+..++..||-++.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 56899999999999999999999999999999999994443333 33334589999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhcC
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVKDK 115 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~~~ 115 (115)
++||++.+-++.++..|.+++.+.++|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~N 114 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVREN 114 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcC
Confidence 999999999999999999999998764
No 131
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=4e-19 Score=111.93 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=82.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|.+++||||+++++..+.+.. ..||.+.. ...+..++ +.+.+||.+|+..++.++..|+.+++++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 3678999999999999999999999776543 55666532 22334444 46789999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|.++++.+......+..+...
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLND 110 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTS
T ss_pred EEEecccceeecccccchhhhcch
Confidence 999999999999999888887764
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=1e-17 Score=104.75 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=79.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|++|||||||++++.+..+. .+.++.+.. ...+...+ ..+.+||++|+..+...+..+++.+++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 344899999999999999999999987664 344555522 22333443 56889999999999888899999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+|+|+++..++.....|+..+.+
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~ 109 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLE 109 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHh
Confidence 99999999999998888877654
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=1.1e-17 Score=102.06 Aligned_cols=101 Identities=31% Similarity=0.472 Sum_probs=83.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+||+++|.+|+|||||++++....+...+.++.. +.....+..++..+.+.+||+||+.++..++..++..+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999887666666666 33344456777778899999999999999999999999999999
Q ss_pred EeCCCH-HHHHHHH-HHHHHHHhh
Q psy9154 91 YSVTDQ-QSYENIK-HFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~-~s~~~~~-~~~~~i~~~ 112 (115)
+|+... .++.... .|...+.+.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~ 104 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHH 104 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHh
Confidence 999987 7777765 777777654
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.78 E-value=5e-18 Score=106.64 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC-------CCCCCCCCc------c-eeEEEEE--Ee---CCeEEEEEEEeCCCccchh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL-------FVTDYDPTI------E-DSYLQHT--EV---DDVMCILDVLDTAGQEEFS 74 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~-------~~~~~~~~~------~-~~~~~~~--~~---~~~~~~l~~~d~~g~~~~~ 74 (115)
+|+++|+++||||||++++++.. +...+.++. + ....... .+ ++..+.+++|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 222232222 1 1111222 22 5677889999999999999
Q ss_pred hhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHH
Q psy9154 75 AMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 75 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~ 108 (115)
.+...+++.+|++|+|||+++..+++.+..|...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~ 115 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA 115 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH
Confidence 9999999999999999999998777777766543
No 135
>KOG0070|consensus
Probab=99.77 E-value=1.6e-18 Score=107.75 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=85.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+.+|+++|..++||||++.++..+++... .||++-.... +.+. .+.+++||.+||.+++.++..|++.++++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 355689999999999999999999998888665 8888833222 2333 66799999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|.|.+|++-+..+++-+..+....
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~ 114 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEP 114 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence 99999999999999988877776654
No 136
>KOG3883|consensus
Probab=99.76 E-value=3e-17 Score=99.59 Aligned_cols=105 Identities=36% Similarity=0.512 Sum_probs=88.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeC-CeEEEEEEEeCCCccch-hhhHHHHhhcCCE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVD-DVMCILDVLDTAGQEEF-SAMREQYMRKGDG 86 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~-~~~~~~~~~~~~~ 86 (115)
.-.|++++|..+||||+++.+++.+.-. .++.+|+++.|...+..+ +..-.+.++||.|-..+ ..+-..|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4689999999999999999999866554 467788998887766554 44568899999998877 6677789999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhcC
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVKDK 115 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~~~ 115 (115)
++|||+..|++||+.+...-++|.+++++
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdK 116 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDK 116 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999888888887764
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=1.3e-17 Score=106.52 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=69.7
Q ss_pred eEEEECCCCCcHHHHHHHHHh--CCCCCCCC------------CCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ--KLFVTDYD------------PTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
+|+++|+++||||||+++++. +.|...+. .+.+ ........+......+++|||||+.+|..+..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 56654431 1122 12223334445567889999999999999999
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
.+++.+|++++|||+++. .+.....|+..+
T Consensus 84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~ 113 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKA 113 (194)
T ss_pred HHHHhcCEEEEEEECCCC-ccHHHHHHHHHH
Confidence 999999999999999884 233334444444
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=4.3e-17 Score=100.72 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=62.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhC---CCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK---LFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
.|+++|+++||||||++++.+. .+..++.+... +.........+ ...+.+|||||+.++......++.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999863 33322222222 21122233331 3478999999999988777778899999999
Q ss_pred EEeCCC---HHHHHHHH
Q psy9154 90 VYSVTD---QQSYENIK 103 (115)
Q Consensus 90 ~~d~~~---~~s~~~~~ 103 (115)
|+|+++ +++++.+.
T Consensus 81 V~d~~~~~~~~~~~~~~ 97 (164)
T cd04171 81 VVAADEGIMPQTREHLE 97 (164)
T ss_pred EEECCCCccHhHHHHHH
Confidence 999987 55555443
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=5.8e-17 Score=100.90 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=66.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----chhhhHHHHh---hcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----EFSAMREQYM---RKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~~~~~~~~---~~~~ 85 (115)
.|+++|.++||||||++++.+..... .++.+..+........++. ..+.+|||||.. ....+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 68999999999999999998755421 1111111111112222322 468999999963 2223444444 4599
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQ-QSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~-~s~~~~~~~~~~i~~~ 112 (115)
++++|+|++++ ++++++..|++++.+.
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~ 108 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELY 108 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 8999999999998765
No 140
>PTZ00099 rab6; Provisional
Probab=99.73 E-value=1.1e-16 Score=100.98 Aligned_cols=79 Identities=32% Similarity=0.531 Sum_probs=71.5
Q ss_pred CCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 35 KLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+.|.+.+.+|++ +.+.+.+.+++..+.+.||||+|++++..++..+++++|++|+|||+++++||+.+..|+..+.+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 568888999998 5556667889999999999999999999999999999999999999999999999999999997753
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=2e-17 Score=100.50 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=58.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc-----chhhhHHHHhhcCCEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE-----EFSAMREQYMRKGDGFL 88 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-----~~~~~~~~~~~~~~~~i 88 (115)
||+++|++|||||||++++.+..+. +.++... .... .+|||||+. .+..+.. .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 3333321 1111 589999973 3444444 488999999
Q ss_pred EEEeCCCHHHHHHHHHHHH
Q psy9154 89 LVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~ 107 (115)
+|||++++.++.. ..|.+
T Consensus 68 lv~d~~~~~s~~~-~~~~~ 85 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFAS 85 (142)
T ss_pred EEecCCCCCcCCC-hhHHH
Confidence 9999999998765 34544
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.70 E-value=7.1e-16 Score=93.00 Aligned_cols=90 Identities=44% Similarity=0.751 Sum_probs=75.6
Q ss_pred EECCCCCcHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 17 VVGDGGVGKSAITIQFFQKLF-VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 17 i~G~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
++|++|+|||||++++.+... .....++..+..............+.+||++|...+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 4445555545455555666778899999999999888888889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy9154 96 QQSYENIKHFY 106 (115)
Q Consensus 96 ~~s~~~~~~~~ 106 (115)
+.+++.+..|+
T Consensus 81 ~~~~~~~~~~~ 91 (157)
T cd00882 81 RESFENVKEWL 91 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999998883
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.70 E-value=3.8e-16 Score=100.25 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCC--CCCcceeEEEEEEeCCeEEEEEEEeCCCccc---------hhhhHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY--DPTIEDSYLQHTEVDDVMCILDVLDTAGQEE---------FSAMRE 78 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------~~~~~~ 78 (115)
...++|+++|++|||||||++++.+..+.... .++. +.....+...+. ..+.+|||||... +....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL-DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec-cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 44689999999999999999999987653221 2222 222233333332 2688999999732 11111
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
..+..+|++++++|++++.++..+..|.+.+...
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~ 149 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL 149 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc
Confidence 2366899999999999999998888888777654
No 144
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.70 E-value=5.1e-16 Score=96.40 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=63.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.|+++|+++||||||++++..+.+.....+... +.....+... .....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998887654333222 1111222222 23567899999999999999999999999999999
Q ss_pred eCCCH
Q psy9154 92 SVTDQ 96 (115)
Q Consensus 92 d~~~~ 96 (115)
|.++.
T Consensus 82 d~~~~ 86 (168)
T cd01887 82 AADDG 86 (168)
T ss_pred ECCCC
Confidence 99883
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=5.5e-16 Score=109.66 Aligned_cols=97 Identities=22% Similarity=0.364 Sum_probs=73.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MREQY 80 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~ 80 (115)
..+||+++|++|||||||++++.+... ...++.+..+.....+.+++.. +.+|||+|...+.. ....+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 358999999999999999999998643 3455555556556666666654 67999999865432 23457
Q ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 81 MRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
++.+|++++|||++++.+++.. |+..+..
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK 308 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh
Confidence 8899999999999998888775 7776643
No 146
>KOG4423|consensus
Probab=99.69 E-value=3.6e-20 Score=115.29 Aligned_cols=103 Identities=29% Similarity=0.509 Sum_probs=93.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCe-EEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDV-MCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
..+.+|+.++|+.|||||++++|++...|...|..+++ ++..+.+.++.. .+.+++||+.||+++..|...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 46689999999999999999999999999999999999 665666777655 4588999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
..+|||+++..+|+....|.+++..
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdlds 126 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDS 126 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccC
Confidence 9999999999999999999998754
No 147
>KOG0075|consensus
Probab=99.69 E-value=3.6e-17 Score=98.60 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=83.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+..+.++|...+|||||++....+.+.+.-.|+.+-... .+....+.+.+||.+||.+++.++.+|+++++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 3678999999999999999999999999888899884332 3445666788999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHH
Q psy9154 91 YSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~ 110 (115)
+|..+++.++..++=+..+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL 115 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLL 115 (186)
T ss_pred eecCCcccchhhHHHHHHHh
Confidence 99999998888876665554
No 148
>KOG0071|consensus
Probab=99.69 E-value=5e-16 Score=93.03 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=79.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+++|+++|..++||||++-.+.-+.. ....||++-. .. .+..+.++|++||.+|+.+.+.+|..||.++.++|+|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFn-ve--tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN-VE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-ccccccccee-EE--EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 478999999999999999999987765 3445666621 22 2334667899999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.|..+++-.++++.=+..|.+.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIIND 113 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCC
Confidence 9999998888887766555443
No 149
>KOG0074|consensus
Probab=99.69 E-value=1.1e-15 Score=91.66 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=80.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
+..+++||.++|-.++|||+|++.+..... ....||.+- ..+.+. ....+.+++||.+|+...+..|..||.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GF-n~k~v~-~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGF-NTKKVE-YDGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCc-ceEEEe-ecCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 457899999999999999999999876544 344555552 233333 23457899999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
|+|.|.+|+.-|+.+..-+.++.
T Consensus 90 IyVIDS~D~krfeE~~~el~ELl 112 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELL 112 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHh
Confidence 99999999988998877666554
No 150
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=1.8e-15 Score=94.01 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=63.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEeCCeEEEEEEEeCCCccch----------hhhHHHHhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTD-YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----------SAMREQYMR 82 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~~~~~~ 82 (115)
+|+++|++|||||||++++.+..+... +..+..+...... ....+.+.+|||||.... ..+. ....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHH-HHHh
Confidence 799999999999999999998877432 1111112111122 223468999999997421 1111 1122
Q ss_pred cCCEEEEEEeCCCHHH--HHHHHHHHHHHHhh
Q psy9154 83 KGDGFLLVYSVTDQQS--YENIKHFYTQILRV 112 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s--~~~~~~~~~~i~~~ 112 (115)
.+|++|+|+|.+++++ ++....|++.+.+.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~ 110 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL 110 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh
Confidence 3689999999998765 46677888888654
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.65 E-value=3.7e-15 Score=102.83 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=71.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc---------chhhhHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE---------EFSAMREQY 80 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~---------~~~~~~~~~ 80 (115)
..++|+++|.++||||||++++.+..+.. ....+..+.....+.+.+. ..+.+|||+|.. .|.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 45899999999999999999999876432 2222223444445555322 368899999972 122222 25
Q ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 81 MRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+..+|++++|+|++++.+++.+..|...+.+.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l 297 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEEL 297 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHh
Confidence 78999999999999999988888777766654
No 152
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.64 E-value=3.8e-15 Score=108.66 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=71.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC-------CCCCCCCCc------c-eeEEEEE--Ee---CCeEEEEEEEeCCCccchh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL-------FVTDYDPTI------E-DSYLQHT--EV---DDVMCILDVLDTAGQEEFS 74 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~-------~~~~~~~~~------~-~~~~~~~--~~---~~~~~~l~~~d~~g~~~~~ 74 (115)
+++++|+.++|||||+.+++... +...+..+. + ......+ .+ ++..+.+++|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998642 222222221 2 1112222 22 4667899999999999999
Q ss_pred hhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 75 AMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 75 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
.....++..+|++|+|+|+++..+......|...+
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~ 119 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL 119 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH
Confidence 99999999999999999999977777766665543
No 153
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.6e-14 Score=102.15 Aligned_cols=94 Identities=22% Similarity=0.199 Sum_probs=67.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc--------hhhhHHHHhh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE--------FSAMREQYMR 82 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--------~~~~~~~~~~ 82 (115)
.+|+++|.+|||||||++++.+... ....+.+..+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999997764 23333333344455555655 5789999999876 3334456788
Q ss_pred cCCEEEEEEeCCCHHHH--HHHHHHHHH
Q psy9154 83 KGDGFLLVYSVTDQQSY--ENIKHFYTQ 108 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~--~~~~~~~~~ 108 (115)
.+|++|+|+|.+++.+. ..+..|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~ 107 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK 107 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999884332 344555543
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.5e-14 Score=103.39 Aligned_cols=96 Identities=23% Similarity=0.252 Sum_probs=66.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccc--------hhhhHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEE--------FSAMREQYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~--------~~~~~~~~~ 81 (115)
..+|+++|.++||||||++++.+..... ...+... +.....+.+++. .+.+|||+|... +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4789999999999999999999876431 2222222 334444455554 477999999752 334456688
Q ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
+.+|++|+|+|++++.++.. ..|...+.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~ 143 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLR 143 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHH
Confidence 99999999999998755432 33444443
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.4e-14 Score=103.53 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=70.2
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCc----------cchhhhH-
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ----------EEFSAMR- 77 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----------~~~~~~~- 77 (115)
..+||+++|.++||||||++++++..+. .....+..+.....+..++.. +.+|||+|. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987652 233334445555556666665 469999995 2333333
Q ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 78 EQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 78 ~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
..+++.+|++|+|+|++++.++..+. ++..+.
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~ 319 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI 319 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH
Confidence 24678999999999999988888774 444443
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.61 E-value=1.1e-14 Score=89.20 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=65.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hHHHHhh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MREQYMR 82 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~~ 82 (115)
++|+++|++|+|||||++++.+.... .....+..+.........+ ..+.+|||||...+.. ....++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 2233333333333334443 4678999999765432 2234677
Q ss_pred cCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 83 KGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
.+|++++|+|++++.+....+.|..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~ 104 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL 104 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999888777766543
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.61 E-value=1.2e-14 Score=103.27 Aligned_cols=95 Identities=26% Similarity=0.335 Sum_probs=70.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhh--------HHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAM--------REQY 80 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--------~~~~ 80 (115)
..+||+++|.++||||||++++.+... ......+..+.....+.+++. .+.+|||+|..++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 358999999999999999999998764 334444444555555666654 5789999998654321 2346
Q ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 81 MRKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
+..+|++++|+|.+++.+++....|..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~ 318 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE 318 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh
Confidence 889999999999999888887665543
No 158
>PRK04213 GTP-binding protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=96.84 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCC-----------ccchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG-----------QEEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------~~~~~~~ 76 (115)
++...++|+++|.+|||||||++++.+..+...+.+... .....+... .+.+||||| ++.++.+
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 344578999999999999999999998877544444322 112222222 488999999 5677777
Q ss_pred HHHHhh-c---CCEEEEEEeCCC
Q psy9154 77 REQYMR-K---GDGFLLVYSVTD 95 (115)
Q Consensus 77 ~~~~~~-~---~~~~il~~d~~~ 95 (115)
+..++. . ++++++|+|.++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCcc
Confidence 666665 3 456677777654
No 159
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.6e-14 Score=99.05 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=70.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----hhhhHH---HHhhcC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----FSAMRE---QYMRKG 84 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~---~~~~~~ 84 (115)
..|.|+|.++||||||++++...... ..++-|......-.+.+. ....+.+||+||..+ ...+.. .+++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 56899999999999999999875432 223323223223333332 223578999998642 222333 345679
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++|+|+|+++.++++.+..|.+++..+.
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~ 266 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYS 266 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999889999999999998764
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=1.3e-14 Score=89.16 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=58.5
Q ss_pred EECCCCCcHHHHHHHHHhCCCCCCCCC-CcceeEEEEEEeCCeEEEEEEEeCCCccchhh------hHHHHhh--cCCEE
Q psy9154 17 VVGDGGVGKSAITIQFFQKLFVTDYDP-TIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA------MREQYMR--KGDGF 87 (115)
Q Consensus 17 i~G~~~vGKtsl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~~~~~~~--~~~~~ 87 (115)
++|++|||||||++++.+..+.....+ +..+.....+.+++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764433222 22233344455555 4688999999887654 4556665 89999
Q ss_pred EEEEeCCCHHHH
Q psy9154 88 LLVYSVTDQQSY 99 (115)
Q Consensus 88 il~~d~~~~~s~ 99 (115)
|+++|.+++++.
T Consensus 79 i~v~d~~~~~~~ 90 (158)
T cd01879 79 VNVVDATNLERN 90 (158)
T ss_pred EEEeeCCcchhH
Confidence 999999986553
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=8.1e-15 Score=100.83 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=64.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-hhhhHH-------H
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-FSAMRE-------Q 79 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~-------~ 79 (115)
...++|+++|+++||||||++++++..+.. ....+........+..++. ++.||||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887752 1111112223333444443 578999999843 222221 2
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHH-HHHHHHHh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIK-HFYTQILR 111 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~-~~~~~i~~ 111 (115)
++.++|++++|+|.++ ++..+. .|++.+.+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~ 158 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS 158 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh
Confidence 4779999999999766 555553 45555544
No 162
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.60 E-value=1.9e-14 Score=90.82 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEE-EEEeCCeEEEEEEEeCCCc----------cchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQ-HTEVDDVMCILDVLDTAGQ----------EEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~g~----------~~~~~~ 76 (115)
+.....+|+++|++|||||||++++.+..+...+.++.+..... ....++ .+.+|||||. ..+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 44668899999999999999999999887554444444432211 122222 5889999994 334455
Q ss_pred HHHHhhc---CCEEEEEEeCCCHHHHHHH
Q psy9154 77 REQYMRK---GDGFLLVYSVTDQQSYENI 102 (115)
Q Consensus 77 ~~~~~~~---~~~~il~~d~~~~~s~~~~ 102 (115)
...+++. ++++++++|.+++-+....
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 5566664 5799999999885554444
No 163
>KOG1707|consensus
Probab=99.60 E-value=8.4e-15 Score=104.32 Aligned_cols=106 Identities=21% Similarity=0.401 Sum_probs=85.6
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
......++|+++|+.|||||||+..++...|+++.++.......+ ..+....+...+.|++....-+.....-++.+|+
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 356678999999999999999999999999988766655533332 3344445557899998766666666778899999
Q ss_pred EEEEEeCCCHHHHHHH-HHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
++++|++++++|++.+ ..|+..|++..
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~ 110 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLF 110 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhccc
Confidence 9999999999999999 56999998864
No 164
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=1.6e-14 Score=90.21 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=64.7
Q ss_pred EECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----hhhhH---HHHhhcCCEEE
Q psy9154 17 VVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----FSAMR---EQYMRKGDGFL 88 (115)
Q Consensus 17 i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~---~~~~~~~~~~i 88 (115)
++|++|||||||++++.+..+. ..+..+..+........++ ...+.+||+||... ...+. ..++..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999999987641 2222222222222333331 34578999999632 22222 33577899999
Q ss_pred EEEeCCCH------HHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQ------QSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~------~s~~~~~~~~~~i~~~ 112 (115)
+|+|.+++ .+++.+..|..++...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLY 109 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHh
Confidence 99999998 5888888888887654
No 165
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.59 E-value=2.3e-14 Score=95.81 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch-----hhh---HHHHhhc
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF-----SAM---REQYMRK 83 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----~~~---~~~~~~~ 83 (115)
+|+++|.+|||||||++++.+.++.. ..+.+...... .+...+ ..++.+|||||.... ..+ ...++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999887642 22223332222 222222 246889999996532 111 2346789
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 84 GDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 84 ~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
+|++++|+|.++..+.+ ..++..+.
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~ 104 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQ 104 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHH
Confidence 99999999999876664 34444443
No 166
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.59 E-value=1.4e-14 Score=93.78 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=66.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCC-----------CCC------cc-eeEE--EEEEe---CCeEEEEEEEeCCCc
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDY-----------DPT------IE-DSYL--QHTEV---DDVMCILDVLDTAGQ 70 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~-----------~~~------~~-~~~~--~~~~~---~~~~~~l~~~d~~g~ 70 (115)
+|+++|+.++|||||+.+++........ ..+ .+ .... ..+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875443211 000 00 0001 11111 355788999999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
.++......++..+|++++|+|.++..++.. ..|+..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~ 119 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHA 119 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 9998888899999999999999988766543 3444443
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=4.9e-14 Score=104.44 Aligned_cols=95 Identities=23% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc---eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE---DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.....+|+++|+.++|||||++++....+.....+... ..+......++....+.||||||+..|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 34567999999999999999999998777543322211 222222333445678999999999999999999999999
Q ss_pred EEEEEEeCCC---HHHHHHHH
Q psy9154 86 GFLLVYSVTD---QQSYENIK 103 (115)
Q Consensus 86 ~~il~~d~~~---~~s~~~~~ 103 (115)
++|+|+|+++ +.+++.+.
T Consensus 321 iaILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH
Confidence 9999999988 45665554
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.58 E-value=5.5e-14 Score=102.39 Aligned_cols=93 Identities=24% Similarity=0.265 Sum_probs=69.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
..+..+|+++|+.++|||||++++.+..+.....+... +.....+.+.+. ..+.||||||+..|..++..++..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 34568999999999999999999998877654332222 211223333322 1688999999999999999999999999
Q ss_pred EEEEeCCC---HHHHHHH
Q psy9154 88 LLVYSVTD---QQSYENI 102 (115)
Q Consensus 88 il~~d~~~---~~s~~~~ 102 (115)
|+|+|+++ +++.+.+
T Consensus 163 ILVVda~dgv~~qT~e~i 180 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI 180 (587)
T ss_pred EEEEECCCCCCHhHHHHH
Confidence 99999987 4555544
No 169
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.58 E-value=7.7e-14 Score=95.61 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=70.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----hhhhHHHH---hhcC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----FSAMREQY---MRKG 84 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~~~---~~~~ 84 (115)
..|+++|.++||||||++++...... ..++.+......-.+.+++ ...+.+||+||..+ ...+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 57899999999999999999976532 2233232222233333333 34688999999742 22344444 4469
Q ss_pred CEEEEEEeCCCH---HHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQ---QSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~---~s~~~~~~~~~~i~~~~ 113 (115)
+++++|+|+++. ++++.+..|.+++..+.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 999999999987 78999999999887764
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.57 E-value=6.7e-14 Score=89.05 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCc----------cchhhhH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ----------EEFSAMR 77 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----------~~~~~~~ 77 (115)
......+|+++|++|||||||++++.+..+...+.++.+........ .....+.+|||||. ..+..+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ecCCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 44567899999999999999999999887655555555532222111 11257899999993 3455566
Q ss_pred HHHhhcC---CEEEEEEeCCCHHHH
Q psy9154 78 EQYMRKG---DGFLLVYSVTDQQSY 99 (115)
Q Consensus 78 ~~~~~~~---~~~il~~d~~~~~s~ 99 (115)
..+++.+ +++++++|.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCH
Confidence 6667655 678888898875443
No 171
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=3.9e-14 Score=86.77 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=57.9
Q ss_pred EEECCCCCcHHHHHHHHHhCC--CCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hHHHHhhcCC
Q psy9154 16 VVVGDGGVGKSAITIQFFQKL--FVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MREQYMRKGD 85 (115)
Q Consensus 16 ~i~G~~~vGKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~ 85 (115)
+++|.+|||||||++++.+.. +.....++..+.........+ ..+.+|||||...+.. ....++..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999765 223333333333333344444 4688999999887543 3345678899
Q ss_pred EEEEEEeCCCHHHHH
Q psy9154 86 GFLLVYSVTDQQSYE 100 (115)
Q Consensus 86 ~~il~~d~~~~~s~~ 100 (115)
++++++|..++.+..
T Consensus 79 ~ii~v~d~~~~~~~~ 93 (157)
T cd01894 79 VILFVVDGREGLTPA 93 (157)
T ss_pred EEEEEEeccccCCcc
Confidence 999999998754443
No 172
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.57 E-value=4.3e-14 Score=89.07 Aligned_cols=84 Identities=23% Similarity=0.233 Sum_probs=62.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-----------------eeEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-----------------DSYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
+|+++|++|+|||||++++.+............ ......+. .....+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE--WPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe--eCCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998776544322110 11111122 22457889999999999888
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSY 99 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~ 99 (115)
...++..+|++++++|.+++.+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~ 101 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQP 101 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcH
Confidence 88999999999999999886544
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.56 E-value=1.1e-13 Score=85.17 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=57.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hHHHHhh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MREQYMR 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~~ 82 (115)
...+|+++|.+|+|||||++++.+...........................+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999775532211111111111112233345788999999654322 3344678
Q ss_pred cCCEEEEEEeCCCH
Q psy9154 83 KGDGFLLVYSVTDQ 96 (115)
Q Consensus 83 ~~~~~il~~d~~~~ 96 (115)
.+|++++|+|.+++
T Consensus 82 ~~d~i~~v~d~~~~ 95 (168)
T cd04163 82 DVDLVLFVVDASEP 95 (168)
T ss_pred hCCEEEEEEECCCc
Confidence 89999999999987
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=1.1e-13 Score=97.67 Aligned_cols=98 Identities=23% Similarity=0.178 Sum_probs=66.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch--hhhH------HHHhhc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF--SAMR------EQYMRK 83 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~------~~~~~~ 83 (115)
.+|+++|.++||||||++++.+..+.. +...+..+.....+.+.+. ..+.+|||+|..+. ..+. ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999866432 2222222333334444432 14679999997432 1112 234678
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 84 GDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 84 ~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+|++|+|+|++++.+++.+..|.+.+..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e 304 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEE 304 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHH
Confidence 9999999999999888888665554443
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.55 E-value=4e-14 Score=90.22 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=56.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC----CCCCCC-----CCCcc-eeEEEEEE----------eCCeEEEEEEEeCCCccc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK----LFVTDY-----DPTIE-DSYLQHTE----------VDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~----~~~~~~-----~~~~~-~~~~~~~~----------~~~~~~~l~~~d~~g~~~ 72 (115)
++|+++|++++|||||+++++.. .+.... ..|.. ......+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999963 221111 12222 11111111 123367889999999876
Q ss_pred hhhhHHHHhhcCCEEEEEEeCCCHHHHH
Q psy9154 73 FSAMREQYMRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 73 ~~~~~~~~~~~~~~~il~~d~~~~~s~~ 100 (115)
+..........+|++++|+|.++..+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHH
Confidence 5443334456789999999998844333
No 176
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.54 E-value=7e-14 Score=91.98 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=66.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCC------CCCCCc----------c-eeEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVT------DYDPTI----------E-DSYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~------~~~~~~----------~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
+|+++|..++|||||+.+++...-.. ....+. + ..............++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998531110 000010 0 111222233344567899999999999988
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
...+++.+|++++|+|.++..+. ....|+..+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~ 114 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK 114 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH
Confidence 88999999999999999986443 34455555543
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=2.2e-13 Score=96.16 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=65.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh----------hH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA----------MR 77 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~ 77 (115)
...+||+++|.++||||||++++++.... .....+..+.....+..++. .+.+|||||..++.. +.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 44689999999999999999999976532 23333433444444445554 578999999754332 11
Q ss_pred -HHHhhcCCEEEEEEeCCCHHHHHHHH
Q psy9154 78 -EQYMRKGDGFLLVYSVTDQQSYENIK 103 (115)
Q Consensus 78 -~~~~~~~~~~il~~d~~~~~s~~~~~ 103 (115)
..+++.+|++|+|+|++++.+....+
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~ 274 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR 274 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH
Confidence 24688999999999999987766653
No 178
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.54 E-value=1.2e-13 Score=100.61 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=67.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEe-------------CCeEEEEEEEeCCCccchhh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYD----PTIEDSYLQHTEV-------------DDVMCILDVLDTAGQEEFSA 75 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~l~~~d~~g~~~~~~ 75 (115)
--|+++|++++|||||++++.+..+..... .+.+..+...-.. ......+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 459999999999999999999887754322 2223222111000 01112388999999999999
Q ss_pred hHHHHhhcCCEEEEEEeCCC---HHHHHHHHH
Q psy9154 76 MREQYMRKGDGFLLVYSVTD---QQSYENIKH 104 (115)
Q Consensus 76 ~~~~~~~~~~~~il~~d~~~---~~s~~~~~~ 104 (115)
++..+++.+|++++|+|+++ +.+++.+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~ 116 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNI 116 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH
Confidence 99999999999999999997 677777653
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.53 E-value=2.2e-13 Score=96.14 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=61.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCc--------cchhhhHHHHhhc
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ--------EEFSAMREQYMRK 83 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--------~~~~~~~~~~~~~ 83 (115)
+|+++|.++||||||++++.+.... ..++.+..+.....+.+++. .+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 6899999999999999999987642 23333333444555555555 4889999995 3444556668899
Q ss_pred CCEEEEEEeCCCHHH
Q psy9154 84 GDGFLLVYSVTDQQS 98 (115)
Q Consensus 84 ~~~~il~~d~~~~~s 98 (115)
+|++++|+|..++.+
T Consensus 79 ad~vl~vvD~~~~~~ 93 (429)
T TIGR03594 79 ADVILFVVDGREGLT 93 (429)
T ss_pred CCEEEEEEeCCCCCC
Confidence 999999999987433
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=2.5e-13 Score=101.40 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
..+...|+++|+.++|||||++++....+......... ......+.+++ ..+.||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45678899999999999999999988776543222211 11122334444 4688999999999999999999999999
Q ss_pred EEEEeCCC---HHHHHHH
Q psy9154 88 LLVYSVTD---QQSYENI 102 (115)
Q Consensus 88 il~~d~~~---~~s~~~~ 102 (115)
|||+|+++ +++.+.+
T Consensus 365 ILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI 382 (787)
T ss_pred EEEEECCCCCCHhHHHHH
Confidence 99999988 5555554
No 181
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.52 E-value=4.7e-13 Score=87.86 Aligned_cols=91 Identities=21% Similarity=0.183 Sum_probs=61.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh-------hhHHHHhhcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS-------AMREQYMRKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~~~ 85 (115)
+|+++|.++||||||++++.+.... ..++.+..+.....+.+++ ..+++||+||..+.. .....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7999999999999999999976532 2233222233333334444 468899999975332 12335788999
Q ss_pred EEEEEEeCCCHH-HHHHHHHHH
Q psy9154 86 GFLLVYSVTDQQ-SYENIKHFY 106 (115)
Q Consensus 86 ~~il~~d~~~~~-s~~~~~~~~ 106 (115)
++++|+|+++++ ..+.+.+.+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l 101 (233)
T cd01896 80 LILMVLDATKPEGHREILEREL 101 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHH
Confidence 999999998865 444444433
No 182
>KOG0076|consensus
Probab=99.52 E-value=1.4e-13 Score=85.09 Aligned_cols=99 Identities=20% Similarity=0.383 Sum_probs=74.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC---CCC----CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK---LFV----TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~ 83 (115)
..+.++|+|..++|||+|+...... .+. ....++++-. .-++.+. ...+.|||.+||+..++++..||..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 4678999999999999999887532 111 1223333321 1222333 3468899999999999999999999
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 84 GDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 84 ~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++++|+++|.++++-|+....-++.+.+.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~ 121 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVEN 121 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888777766543
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.52 E-value=2.5e-13 Score=99.06 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=67.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC---CCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK---LFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+.|+++|+.++|||||++++.+. .+..++..... +.....+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 33333333333 22233344444 67899999999999888888899999999
Q ss_pred EEEeCCC---HHHHHHHH
Q psy9154 89 LVYSVTD---QQSYENIK 103 (115)
Q Consensus 89 l~~d~~~---~~s~~~~~ 103 (115)
+|+|+++ +++++.+.
T Consensus 79 LVVDa~~G~~~qT~ehl~ 96 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA 96 (581)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 9999998 67776664
No 184
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.51 E-value=2.3e-13 Score=89.05 Aligned_cols=99 Identities=20% Similarity=0.320 Sum_probs=62.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCC---CCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-----hHHHHhhcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYD---PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-----MREQYMRKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----~~~~~~~~~~ 85 (115)
||+++|..++||||+.+.+.++-.+.+.. +|..... ..+. ....+.+++||+||+..+.. .....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~-~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK-SHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE-EEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE-EEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999977666553332221 2222111 1111 23344789999999986644 4677899999
Q ss_pred EEEEEEeCCCHH---HHHHHHHHHHHHHhhhc
Q psy9154 86 GFLLVYSVTDQQ---SYENIKHFYTQILRVKD 114 (115)
Q Consensus 86 ~~il~~d~~~~~---s~~~~~~~~~~i~~~~~ 114 (115)
++|+|+|+.+.+ .+..+...++.+.++++
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp 110 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP 110 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHST
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCC
Confidence 999999999433 35555556666666554
No 185
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=4e-13 Score=83.32 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=60.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch----------hhh-HH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----------SAM-RE 78 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~-~~ 78 (115)
.++|+++|++|+|||||++++.+.... .....+...........++. .+.+||+||..+. ..+ ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999987543 22222222333333444544 3679999996432 111 12
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHH
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENI 102 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~ 102 (115)
.++..+|++++|+|.+++.+....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL 103 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH
Confidence 356789999999999998776554
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.50 E-value=3.2e-13 Score=90.27 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=60.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC--CCCC--------CCCCcc-----------eeEEEEEEeCCeEEEEEEEeCCCccc
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL--FVTD--------YDPTIE-----------DSYLQHTEVDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~--~~~~--------~~~~~~-----------~~~~~~~~~~~~~~~l~~~d~~g~~~ 72 (115)
+|+++|++++|||||+++++... .... ...+.. ........+....+++++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 69999999999999999998421 1100 000111 11222334455667899999999999
Q ss_pred hhhhHHHHhhcCCEEEEEEeCCCHH
Q psy9154 73 FSAMREQYMRKGDGFLLVYSVTDQQ 97 (115)
Q Consensus 73 ~~~~~~~~~~~~~~~il~~d~~~~~ 97 (115)
|......+++.+|++|+|+|.++..
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~ 108 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGV 108 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCc
Confidence 9887778899999999999998753
No 187
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=6.9e-13 Score=93.43 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=67.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----chhhhHHHH---hhcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----EFSAMREQY---MRKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~~~~~~~---~~~~~ 85 (115)
.|+++|.++||||||++++.+.+.. ..++-+......-.+.+. ....+.+||+||.. ....+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 7999999999999999999976532 122222222222222332 13458899999963 223344444 44599
Q ss_pred EEEEEEeCCCH---HHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQ---QSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~---~s~~~~~~~~~~i~~~~ 113 (115)
++|+|+|+++. ++++++..|.+++..+.
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~ 269 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYN 269 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhc
Confidence 99999999865 67888888988888764
No 188
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=3e-12 Score=75.44 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=58.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch---------hhhHHHHhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF---------SAMREQYMR 82 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---------~~~~~~~~~ 82 (115)
+|+++|.+|||||||++++.+.... .....+........+.+++..+ .++||||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999975432 2222333333334455666654 59999995421 111223347
Q ss_pred cCCEEEEEEeCCCH--HHHHHHHHHH
Q psy9154 83 KGDGFLLVYSVTDQ--QSYENIKHFY 106 (115)
Q Consensus 83 ~~~~~il~~d~~~~--~s~~~~~~~~ 106 (115)
.+|++++|+|.+++ ++..++-.|+
T Consensus 79 ~~d~ii~vv~~~~~~~~~~~~~~~~l 104 (116)
T PF01926_consen 79 KSDLIIYVVDASNPITEDDKNILREL 104 (116)
T ss_dssp TESEEEEEEETTSHSHHHHHHHHHHH
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999998884 2344444443
No 189
>PRK10218 GTP-binding protein; Provisional
Probab=99.49 E-value=8.6e-13 Score=96.46 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=65.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh--CCCCCCCC------------CCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ--KLFVTDYD------------PTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
.-+|+++|+.++|||||+.+++. +.+..... .+.+ ........+....+++++|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 35899999999999999999996 44433221 1122 222334445556678999999999999999
Q ss_pred HHHHhhcCCEEEEEEeCCCH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~ 96 (115)
...+++.+|++|+|+|.++.
T Consensus 85 v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred HHHHHHhCCEEEEEEecccC
Confidence 99999999999999999885
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=5.2e-13 Score=99.44 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=67.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----------chhhhH-
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----------EFSAMR- 77 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~- 77 (115)
...||+++|.++||||||++++++... ...+..+..+.....+.+++.. +.+|||+|.. .+..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 358999999999999999999998864 3444445555555555666665 5599999953 222222
Q ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHH
Q psy9154 78 EQYMRKGDGFLLVYSVTDQQSYENIKH 104 (115)
Q Consensus 78 ~~~~~~~~~~il~~d~~~~~s~~~~~~ 104 (115)
..+++.+|++++|+|++++.++..+..
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i 553 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV 553 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH
Confidence 235789999999999999888777653
No 191
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=3.7e-13 Score=90.34 Aligned_cols=60 Identities=32% Similarity=0.510 Sum_probs=45.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCC----------CCCCcc-eeEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTD----------YDPTIE-DSYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
..++|+++|.+|+|||||++++++..+... ..++.. ......+..++..+.+.+|||||-
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 468999999999999999999998877543 223332 333444556788889999999994
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.47 E-value=9.9e-13 Score=96.23 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=67.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC--CCCC-----CCCC------Ccc-eeEEEE--EEe---CCeEEEEEEEeCCCccch
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK--LFVT-----DYDP------TIE-DSYLQH--TEV---DDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~--~~~~-----~~~~------~~~-~~~~~~--~~~---~~~~~~l~~~d~~g~~~~ 73 (115)
-+++++|+.++|||||+.+++.. .+.. .+.. +-+ ...... +.+ ++..+.+++|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 47999999999999999999863 2211 1100 011 111111 111 456789999999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
......++..+|++|+|+|+++..+......|..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~ 121 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 121 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999998655555555544
No 193
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.46 E-value=1.4e-12 Score=95.25 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=66.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEe---CCeE-----E-----EEEEEeCCCccch
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD----PTIEDSYLQHTEV---DDVM-----C-----ILDVLDTAGQEEF 73 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~-----~-----~l~~~d~~g~~~~ 73 (115)
+...|+++|+.++|||||++++.+........ ++.+..+...-.. .+.. . .+.||||||+..|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 34679999999999999999998665432222 1222111111000 0111 1 2689999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCC---HHHHHHHHHH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTD---QQSYENIKHF 105 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~~~~ 105 (115)
..++...+..+|++|+|+|+++ +++++.+..+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~ 119 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL 119 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH
Confidence 9999999999999999999998 7788777543
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=81.43 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=74.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCC--------CC----CCcceeEEEEEEeCCeEEEEEEEeCCCccchh
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--------YD----PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS 74 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 74 (115)
...+...||+++|+-++|||++++.+........ +. .|+...+-. +.+ .....+++++||||.++.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~-~~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IEL-DEDTGVHLFGTPGQERFK 82 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEE-cCcceEEEecCCCcHHHH
Confidence 3567789999999999999999999987764211 11 112211111 122 222458899999999999
Q ss_pred hhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 75 AMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 75 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
-|+..+++++.++|++.|.+++..+ +....+..+.
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~ 117 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT 117 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHh
Confidence 9999999999999999999999888 5555555443
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.46 E-value=3.4e-13 Score=83.70 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=52.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc-----chhhhHHHHhhcCCEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE-----EFSAMREQYMRKGDGFL 88 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-----~~~~~~~~~~~~~~~~i 88 (115)
||+++|.++||||||++++.+. +... .++.. +.+... .+|||||+. .+..+. ..+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~~-~~~~~------v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTLA-RKTQA------VEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-CccC-ccceE------EEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEEE
Confidence 7999999999999999997654 3211 11111 122222 269999973 222222 3478999999
Q ss_pred EEEeCCCHHHHHHHHHHHHH
Q psy9154 89 LVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~ 108 (115)
+|+|.++.+++ +..|+..
T Consensus 70 ~v~d~~~~~s~--~~~~~~~ 87 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLD 87 (158)
T ss_pred EEEeCCCcccc--cCHHHHh
Confidence 99999998775 3345544
No 196
>PRK00089 era GTPase Era; Reviewed
Probab=99.45 E-value=1.8e-12 Score=87.56 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=56.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh--------hhHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTD--YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS--------AMREQY 80 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~ 80 (115)
..-.|+++|.+|||||||++++++...... .+.+........... ...++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 456799999999999999999998766422 122222211111121 23678999999965422 223346
Q ss_pred hhcCCEEEEEEeCCC
Q psy9154 81 MRKGDGFLLVYSVTD 95 (115)
Q Consensus 81 ~~~~~~~il~~d~~~ 95 (115)
+..+|++++++|+++
T Consensus 82 ~~~~D~il~vvd~~~ 96 (292)
T PRK00089 82 LKDVDLVLFVVDADE 96 (292)
T ss_pred HhcCCEEEEEEeCCC
Confidence 778999999999998
No 197
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.44 E-value=2.9e-12 Score=78.98 Aligned_cols=93 Identities=15% Similarity=0.297 Sum_probs=61.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCcc----------chhhhHHHHhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQE----------EFSAMREQYMR 82 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~~~~~ 82 (115)
.|+++|++|+|||||++.+.++.+.....++.+... ........ .+.+||+||.. .+..+...++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997766665555554222 22222222 78899999832 34445555555
Q ss_pred c---CCEEEEEEeCCCH--HHHHHHHHHHHHH
Q psy9154 83 K---GDGFLLVYSVTDQ--QSYENIKHFYTQI 109 (115)
Q Consensus 83 ~---~~~~il~~d~~~~--~s~~~~~~~~~~i 109 (115)
. .+.+++++|.++. .....+..|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~ 109 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL 109 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc
Confidence 4 4688899998765 3334455666543
No 198
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.43 E-value=4.6e-12 Score=78.32 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=56.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch------hhhHHHHh--hc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF------SAMREQYM--RK 83 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~------~~~~~~~~--~~ 83 (115)
++|+++|.|+||||||.+++.+.... .+++.+..+.....+...+. .+.+.|+||.-.. +.+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999987744 24444444555555666664 5779999994322 23444444 58
Q ss_pred CCEEEEEEeCCCHHH
Q psy9154 84 GDGFLLVYSVTDQQS 98 (115)
Q Consensus 84 ~~~~il~~d~~~~~s 98 (115)
.|++|.|.|.++.+.
T Consensus 79 ~D~ii~VvDa~~l~r 93 (156)
T PF02421_consen 79 PDLIIVVVDATNLER 93 (156)
T ss_dssp SSEEEEEEEGGGHHH
T ss_pred CCEEEEECCCCCHHH
Confidence 999999999998543
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.43 E-value=2.3e-12 Score=96.07 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=58.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc--------hhhhHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE--------FSAMREQY 80 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--------~~~~~~~~ 80 (115)
...+|+++|.++||||||++++++.... ...+....+.......+++. .+.+|||+|... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4578999999999999999999987542 22221112333333344444 578999999653 33445567
Q ss_pred hhcCCEEEEEEeCCCH
Q psy9154 81 MRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~ 96 (115)
+..+|++|+|+|.++.
T Consensus 352 ~~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 352 VSLADAVVFVVDGQVG 367 (712)
T ss_pred HHhCCEEEEEEECCCC
Confidence 8999999999999873
No 200
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.43 E-value=4.6e-12 Score=82.62 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=62.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC--CCCC----------------CCCcceeEEEEEEe--------CCeEEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF--VTDY----------------DPTIEDSYLQHTEV--------DDVMCILDVLDT 67 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~--~~~~----------------~~~~~~~~~~~~~~--------~~~~~~l~~~d~ 67 (115)
+|+++|..++|||||+.+++...- .... ..+... ......+ ++..+.+++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~-~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKS-SAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhcccccc-ceEEEEEecCcccccCCCceEEEEECC
Confidence 589999999999999999985321 1100 001000 0011112 244788999999
Q ss_pred CCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHH
Q psy9154 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENI 102 (115)
Q Consensus 68 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~ 102 (115)
||+.+|......+++.+|++|+|+|+++..+....
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~ 115 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE 115 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH
Confidence 99999999999999999999999999987655543
No 201
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.42 E-value=9.7e-13 Score=77.81 Aligned_cols=71 Identities=28% Similarity=0.311 Sum_probs=54.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYD-PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
+||+++|+.|||||+|+.|+....|...+. ++.+ +..+...+++.++++++||
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998888865443 3333 3333445677788888889
Q ss_pred eCCCHHHHHHHHHHHHHHHh
Q psy9154 92 SVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~ 111 (115)
+.++.++++.+ |...+..
T Consensus 55 ~~~~~~s~~~~--~~~~i~~ 72 (124)
T smart00010 55 RVDDRDSADNK--NVPEVLV 72 (124)
T ss_pred EccCHHHHHHH--hHHHHHh
Confidence 88888888776 7776654
No 202
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=5.1e-12 Score=89.47 Aligned_cols=92 Identities=26% Similarity=0.326 Sum_probs=62.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch----------hhhH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----------SAMR 77 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----------~~~~ 77 (115)
...++|+++|.++||||||++++++.... .....+..+.....+..++. .+.+|||||..+. ..+.
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 34799999999999999999999976422 22233333333333444444 4679999995432 1122
Q ss_pred -HHHhhcCCEEEEEEeCCCHHHHHHHH
Q psy9154 78 -EQYMRKGDGFLLVYSVTDQQSYENIK 103 (115)
Q Consensus 78 -~~~~~~~~~~il~~d~~~~~s~~~~~ 103 (115)
..+++.+|++|+|+|++++.+.....
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~ 275 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR 275 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH
Confidence 23678999999999999977766543
No 203
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.40 E-value=6.8e-12 Score=89.74 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----hhhhH---HHHhhc
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----FSAMR---EQYMRK 83 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~---~~~~~~ 83 (115)
...|+|||.++||||||++++.+.... ..++.+......-.+...+ ..+.+||+||... ...+. ..++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 367999999999999999999876443 2233333333333344444 4688999999532 22222 234667
Q ss_pred CCEEEEEEeCCCH----HHHHHHHHHHHHHHhhh
Q psy9154 84 GDGFLLVYSVTDQ----QSYENIKHFYTQILRVK 113 (115)
Q Consensus 84 ~~~~il~~d~~~~----~s~~~~~~~~~~i~~~~ 113 (115)
++++|+|+|+++. +.++.+..|..++.++.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 9999999999863 45666777777776553
No 204
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=3e-12 Score=85.59 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=61.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCC------CCcce-----------eEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYD------PTIED-----------SYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
+|+++|.+|+|||||+++++...-..... .+..+ .......+......+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532211000 01000 00111122223457889999999988888
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSYENIKHF 105 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~ 105 (115)
...++..+|++++|+|.++.........|
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~ 109 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW 109 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH
Confidence 88899999999999999986555444333
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=3.8e-12 Score=93.06 Aligned_cols=97 Identities=14% Similarity=0.268 Sum_probs=68.4
Q ss_pred eEEEECCCCCcHHHHHHHHHh--CCCCCCCCC------------Ccc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ--KLFVTDYDP------------TIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~--~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
+|+++|+.++|||||+.+++. +.+...... .-+ ........+.....++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999986 344322110 011 11222233334457899999999999999999
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
.+++.+|++++|+|+++. .......|+..+.+
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~ 114 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE 114 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH
Confidence 999999999999999873 23444556665544
No 206
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.39 E-value=6.6e-12 Score=80.82 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=37.0
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH----HHHHHHHHH
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ----QSYENIKHF 105 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~----~s~~~~~~~ 105 (115)
..+.||||||+.++.......+..+|++++|+|++++ ++++.+..|
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~ 132 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL 132 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH
Confidence 5789999999998887777788889999999999873 455555444
No 207
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=1e-11 Score=86.89 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=67.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch-------hhhHHHHhhcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF-------SAMREQYMRKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-------~~~~~~~~~~~~ 85 (115)
.|.|+|.++||||||++++.+.+.. ..++.|......-.+...+ ...+.++|+||...- .......+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 6999999999999999999976532 1233333332233333332 224789999996531 112223577899
Q ss_pred EEEEEEeCC---CHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVT---DQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~---~~~s~~~~~~~~~~i~~~~ 113 (115)
++++++|++ +.+.++.+..|++++.++.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 999999998 5667888889999888763
No 208
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.38 E-value=3.7e-12 Score=77.46 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=59.9
Q ss_pred EECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-------hHHHHhhcCCEE
Q psy9154 17 VVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-------MREQYMRKGDGF 87 (115)
Q Consensus 17 i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~~~~~ 87 (115)
++|.+|+|||||++++.+..... ...++............ ....+.+||++|...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999998765542 11122222222222222 145688999999776543 333478899999
Q ss_pred EEEEeCCCHHHHHHHHHHHHH
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~ 108 (115)
++++|.++..+..... |...
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~ 99 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLEL 99 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHH
Confidence 9999999987766664 4433
No 209
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.36 E-value=2.2e-11 Score=83.15 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=55.5
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCC-C-----CCCCcceeEEEE----------------EEeCC-eEEEEEEEeCCCc-
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVT-D-----YDPTIEDSYLQH----------------TEVDD-VMCILDVLDTAGQ- 70 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~-~-----~~~~~~~~~~~~----------------~~~~~-~~~~l~~~d~~g~- 70 (115)
|+++|.++||||||++++.+..+.. + ..|+.+..+... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876531 1 223333222110 00122 3467999999997
Q ss_pred ---cchhhhHHH---HhhcCCEEEEEEeCCC
Q psy9154 71 ---EEFSAMREQ---YMRKGDGFLLVYSVTD 95 (115)
Q Consensus 71 ---~~~~~~~~~---~~~~~~~~il~~d~~~ 95 (115)
..+..+... .++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 455555555 4889999999999973
No 210
>PRK13351 elongation factor G; Reviewed
Probab=99.36 E-value=2.7e-12 Score=95.40 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=67.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCC-------------CC-------CCCCCcceeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLF-------------VT-------DYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
....+|+++|+.++|||||+++++...- .. ....+.. .....+......+++|||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~---~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE---SAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc---cceEEEEECCEEEEEEECCC
Confidence 3467999999999999999999985311 00 0111111 11112223356789999999
Q ss_pred ccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHH
Q psy9154 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHF 105 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~ 105 (115)
+.++......+++.+|++|+|+|.++..+......|
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 999999899999999999999999997776665555
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.36 E-value=5.3e-12 Score=81.52 Aligned_cols=81 Identities=14% Similarity=0.065 Sum_probs=54.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCC--------------------------C------CCCcceeEEEEEEeCCeEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTD--------------------------Y------DPTIEDSYLQHTEVDDVMCI 61 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~--------------------------~------~~~~~~~~~~~~~~~~~~~~ 61 (115)
+|+++|.+++|||||+++++...-.-. . .....+.....+.. ....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence 689999999999999999974321100 0 00000111111222 3346
Q ss_pred EEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 62 l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
+.+|||||+.+|.......+..+|++|+|+|++++
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 78999999988876666678899999999999875
No 212
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.35 E-value=7e-12 Score=88.66 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=57.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC--CC------------CCC---------------Ccc-eeEEEEEEeCCeEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV--TD------------YDP---------------TIE-DSYLQHTEVDDVMC 60 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~------------~~~---------------~~~-~~~~~~~~~~~~~~ 60 (115)
..++|+++|..++|||||+.+++...-. .. ... ..+ ..-.....+.....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3799999999999999999999832111 00 000 001 00011122334456
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
.+.+|||||+.+|.......+..+|++|+|+|+++
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 78999999998886655556789999999999987
No 213
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=4.2e-12 Score=80.13 Aligned_cols=96 Identities=20% Similarity=0.345 Sum_probs=61.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEe-CCeEEEEEEEeCCCccchhhhHHH---HhhcCCEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEV-DDVMCILDVLDTAGQEEFSAMREQ---YMRKGDGFL 88 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~---~~~~~~~~i 88 (115)
-.|+++|++|+|||+|..++..+...+...+. ..... ... ....-.+.+.|+||+.+.+..... +...+.++|
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 36899999999999999999999665544433 22111 111 223335789999999988764443 588999999
Q ss_pred EEEeCCC-HHHHHHHHHHHHHHHh
Q psy9154 89 LVYSVTD-QQSYENIKHFYTQILR 111 (115)
Q Consensus 89 l~~d~~~-~~s~~~~~~~~~~i~~ 111 (115)
+|.|.+. ...+..+.+++-++..
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~ 104 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILS 104 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHH
Confidence 9999974 5556666666555543
No 214
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.35 E-value=1.5e-11 Score=78.84 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=48.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce--eEEEEEEeC-CeEEEEEEEeCCCccchhhhHHH-----Hhhc
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED--SYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQ-----YMRK 83 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~-----~~~~ 83 (115)
.+||+++|++|||||||++.+.+...........+. .......+. .....+.+||++|.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 379999999999999999999986554322222121 000000111 11235889999997643222222 3567
Q ss_pred CCEEEEEEe
Q psy9154 84 GDGFLLVYS 92 (115)
Q Consensus 84 ~~~~il~~d 92 (115)
+|+++++.+
T Consensus 81 ~d~~l~v~~ 89 (197)
T cd04104 81 YDFFIIISS 89 (197)
T ss_pred cCEEEEEeC
Confidence 898888743
No 215
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.34 E-value=4.1e-11 Score=81.17 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=53.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHH------
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQ------ 79 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~------ 79 (115)
.....++|+++|.+||||||+++++++.... ....+............+ ...+.++||||..+...+...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 3467899999999999999999999976532 122111111111112233 357899999997654322211
Q ss_pred -Hhh--cCCEEEEEEeCC
Q psy9154 80 -YMR--KGDGFLLVYSVT 94 (115)
Q Consensus 80 -~~~--~~~~~il~~d~~ 94 (115)
++. +.|++++|..++
T Consensus 112 ~~l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLD 129 (313)
T ss_pred HHhhcCCCCEEEEEeccC
Confidence 121 589999996554
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.34 E-value=1e-11 Score=87.93 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=62.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh--CCCCCCC-----------------------------CCCcceeEEEEEEeCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ--KLFVTDY-----------------------------DPTIEDSYLQHTEVDD 57 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 57 (115)
....++|+++|+.++|||||+.+++. +...... ..... .-.....+..
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~T-id~~~~~~~~ 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVT-IDVAHWKFET 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCce-EEEEEEEEcc
Confidence 34569999999999999999999985 2222100 00000 0011122334
Q ss_pred eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHH
Q psy9154 58 VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSY 99 (115)
Q Consensus 58 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~ 99 (115)
....+.+||+||+++|.......+..+|++|+|+|+++++++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~ 124 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE 124 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence 456789999999998877666678899999999999997543
No 217
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.31 E-value=4.8e-11 Score=89.49 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=62.2
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccchhh----------hHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEEFSA----------MREQ 79 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~~~ 79 (115)
..++|+++|.++||||||.+++.+..... ....+... .+...+.....++++||+||...+.. ....
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 45799999999999999999998765422 11222111 22223344455788999999876532 1223
Q ss_pred Hh--hcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 80 YM--RKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 80 ~~--~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
++ ..+|++++|+|.++.+.- .+|..++.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e 110 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE 110 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH
Confidence 33 378999999999985442 234444444
No 218
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=9.8e-11 Score=82.15 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=56.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC-CCC-----CCcceeEEEE-E---------------EeC-CeEEEEEEEeCCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT-DYD-----PTIEDSYLQH-T---------------EVD-DVMCILDVLDTAG 69 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~-----~~~~~~~~~~-~---------------~~~-~~~~~l~~~d~~g 69 (115)
+||.++|.++||||||++++.+..+.. +++ |+.+..+... + ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876643 332 2222111100 0 011 2336789999999
Q ss_pred c----cchhhhHHHH---hhcCCEEEEEEeCC
Q psy9154 70 Q----EEFSAMREQY---MRKGDGFLLVYSVT 94 (115)
Q Consensus 70 ~----~~~~~~~~~~---~~~~~~~il~~d~~ 94 (115)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4445555555 88999999999997
No 219
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.31 E-value=2.2e-11 Score=88.09 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=60.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh--CCCCCC--------CCCCc----------c-eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ--KLFVTD--------YDPTI----------E-DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~~--------~~~~~----------~-~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
..-+|+++|+.++|||||+.+++. +..... ...+. + ........+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999973 111100 00010 0 11122223334456789999999
Q ss_pred ccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 70 QEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
+.+|......+++.+|++|+|+|.++.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~g 115 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKG 115 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCC
Confidence 999988888889999999999999884
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=5.5e-11 Score=83.45 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=63.1
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCC-------CC-----CCCC--CCcc-eeEEEEEEeCCeEEEEEEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKL-------FV-----TDYD--PTIE-DSYLQHTEVDDVMCILDVL 65 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~-------~~-----~~~~--~~~~-~~~~~~~~~~~~~~~l~~~ 65 (115)
|+...-......++|+++|..++|||||+.+++... +. .... ..-+ ..-.....+......+.+|
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 443334456668999999999999999999997321 00 0000 0001 0011223334445678899
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
||||+.+|..........+|++++|+|+++
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 999999887666666778899999999987
No 221
>KOG0072|consensus
Probab=99.29 E-value=3.7e-12 Score=76.88 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=71.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+.+|+++|..|+|||++.-|+.-++... ..|+++... -.+..++.++++||..|+-..+..|..||.+.+++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv---e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV---ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc---cccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 378999999999999999988887655533 445555221 1223367789999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHH
Q psy9154 90 VYSVTDQQSYENIKH 104 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~ 104 (115)
|+|.+|++.......
T Consensus 92 VVDssd~dris~a~~ 106 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGV 106 (182)
T ss_pred EEeccchhhhhhhHH
Confidence 999999876655543
No 222
>KOG1423|consensus
Probab=99.28 E-value=5.8e-11 Score=79.77 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc------hhhhH-
Q psy9154 5 PNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE------FSAMR- 77 (115)
Q Consensus 5 ~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~------~~~~~- 77 (115)
+++...+.+.|++||.|+||||+|.+.+++.+................-.+.....++.|+||||--. +..+.
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 34566788999999999999999999999988876544333333333334445556788999999321 11111
Q ss_pred -----HHHhhcCCEEEEEEeCCCH
Q psy9154 78 -----EQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 78 -----~~~~~~~~~~il~~d~~~~ 96 (115)
...+..||++++++|++++
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCC
Confidence 1246689999999999963
No 223
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.27 E-value=9.3e-11 Score=84.88 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=61.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh-CCCCCCC---------CCCcc-----------eeEEEEEEeCCeEEEEEEEeCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ-KLFVTDY---------DPTIE-----------DSYLQHTEVDDVMCILDVLDTA 68 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~-~~~~~~~---------~~~~~-----------~~~~~~~~~~~~~~~l~~~d~~ 68 (115)
...-+|+++|++++|||||+.+++. ....... ..+.. .............+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3466999999999999999999863 1111000 00111 1112233445556789999999
Q ss_pred CccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 69 g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
|+.+|......+++.+|++|+|+|.++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 9999888777889999999999999874
No 224
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.27 E-value=4.2e-11 Score=89.46 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=63.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC---------------CCCCC---CCCCcce-eEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK---------------LFVTD---YDPTIED-SYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~---------------~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
...-+|+++|+.++|||||+.+++.. .+.+. ...|... .........+..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999752 11111 1122221 11112234566788999999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.+|.......++.+|++|+|+|..+.
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCC
Confidence 99988888899999999999999873
No 225
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.27 E-value=1.8e-10 Score=76.40 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=53.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh--h-h------
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS--A-M------ 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--~-~------ 76 (115)
.....++|+++|.+|||||||++++++...... ..+............++ ..+.++||||-.+.. . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence 455679999999999999999999998754322 21222221222223333 467899999965441 1 1
Q ss_pred -HHHHhh--cCCEEEEEEeCCC
Q psy9154 77 -REQYMR--KGDGFLLVYSVTD 95 (115)
Q Consensus 77 -~~~~~~--~~~~~il~~d~~~ 95 (115)
...++. ..++++++..++.
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCC
Confidence 122343 4678888765554
No 226
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.26 E-value=6.8e-11 Score=83.28 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=61.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCC------Cccee-----------------EEEEEEeCC------eEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDP------TIEDS-----------------YLQHTEVDD------VMC 60 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~------~~~~~-----------------~~~~~~~~~------~~~ 60 (115)
+..++|+++|+.++|||||++++.+... ..+.. |.... +......++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 4578999999999999999999964322 11111 11100 000000011 135
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC----HHHHHHHH
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD----QQSYENIK 103 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----~~s~~~~~ 103 (115)
.+.+||+||+++|..........+|++++|+|+++ +++.+.+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~ 127 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM 127 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH
Confidence 78999999999998877888889999999999985 33455444
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.25 E-value=1.6e-10 Score=81.13 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCC------------CCC--CCcc-eeEEEEEEeCCeEEEEEEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVT------------DYD--PTIE-DSYLQHTEVDDVMCILDVL 65 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~------------~~~--~~~~-~~~~~~~~~~~~~~~l~~~ 65 (115)
|++.........++|+++|+.++|||||+.++++..... ... ..-+ ........+......+.++
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 444454556678999999999999999999998531100 000 0011 0011122333344567899
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
||||+.+|..........+|++++|+|.++
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 999999887766667788999999999987
No 228
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.25 E-value=1.4e-10 Score=85.24 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=61.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC---CCCCCC--CCCcceeEEEEEEe-CCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK---LFVTDY--DPTIEDSYLQHTEV-DDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
-|.++|+.++|||||++++.+. .+.++. ..|....+. .... ++. .+.+||+||+++|.......+.++|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 4789999999999999999853 232222 222221111 1212 222 478999999999987777788999999
Q ss_pred EEEEeCCC---HHHHHHHH
Q psy9154 88 LLVYSVTD---QQSYENIK 103 (115)
Q Consensus 88 il~~d~~~---~~s~~~~~ 103 (115)
++|+|+++ +.+.+.+.
T Consensus 79 lLVVda~eg~~~qT~ehl~ 97 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLA 97 (614)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 99999988 56666653
No 229
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.24 E-value=1.2e-10 Score=78.02 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=56.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCC-------------CCC---Ccc-eeEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTD-------------YDP---TIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~-------------~~~---~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
+|+++|.+++|||||+++++...-... +.+ .-+ ........+.....++.++||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211000 000 000 001111112223457889999999988888
Q ss_pred HHHHhhcCCEEEEEEeCCCH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~ 96 (115)
...+++.+|++|+|.|..+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g 100 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHHHHHcCEEEEEEECCCC
Confidence 88899999999999999874
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.24 E-value=1.6e-10 Score=81.05 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=68.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh---------hhHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS---------AMREQYM 81 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~ 81 (115)
..|+++|-|+||||||.+|+++.... ..++.+..+..+....+.+.. +.+.||+|-.... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999987654 445555557667777777776 7899999955322 2334467
Q ss_pred hcCCEEEEEEeCCC--HHHHHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTD--QQSYENIKHFYT 107 (115)
Q Consensus 82 ~~~~~~il~~d~~~--~~s~~~~~~~~~ 107 (115)
..||++|+|+|... ...-+.+.+|+.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr 109 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR 109 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999987 333444555554
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.23 E-value=1.5e-10 Score=81.27 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhC-------CCC-----CCCC--CCcc-eeEEEEEEeCCeEEEEEEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQK-------LFV-----TDYD--PTIE-DSYLQHTEVDDVMCILDVL 65 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~-------~~~-----~~~~--~~~~-~~~~~~~~~~~~~~~l~~~ 65 (115)
|++..-.+....++|+++|..++|||||+.++++. .+. .... ..-+ ........+......+.|+
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 44445456667899999999999999999999862 110 0000 0011 0011112233344567899
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
||||+.+|.......+..+|++++|+|+.+.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 9999988876666777889999999999873
No 232
>COG1159 Era GTPase [General function prediction only]
Probab=99.23 E-value=9e-11 Score=78.44 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-----hH---HHH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-----MR---EQY 80 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----~~---~~~ 80 (115)
.+..--|+++|.|+||||||++++++.+..-..............-+.....++.|.||||-.+=.. |. ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3456779999999999999999999987763222111111122222223366788999999443221 22 234
Q ss_pred hhcCCEEEEEEeCCC
Q psy9154 81 MRKGDGFLLVYSVTD 95 (115)
Q Consensus 81 ~~~~~~~il~~d~~~ 95 (115)
+.++|+++++.|.++
T Consensus 83 l~dvDlilfvvd~~~ 97 (298)
T COG1159 83 LKDVDLILFVVDADE 97 (298)
T ss_pred hccCcEEEEEEeccc
Confidence 678999999999988
No 233
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.22 E-value=1.7e-10 Score=84.55 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCCCcHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhh------HHHHhh--cCCEEEE
Q psy9154 19 GDGGVGKSAITIQFFQKLFVTD-YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAM------REQYMR--KGDGFLL 89 (115)
Q Consensus 19 G~~~vGKtsl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------~~~~~~--~~~~~il 89 (115)
|+++||||||++++.+..+... ++.+..+.....+..++. .+++|||||+..+... ...++. .+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998776432 222222434444455554 4789999998876543 333433 7899999
Q ss_pred EEeCCCHH
Q psy9154 90 VYSVTDQQ 97 (115)
Q Consensus 90 ~~d~~~~~ 97 (115)
|+|.++.+
T Consensus 79 VvDat~le 86 (591)
T TIGR00437 79 VVDASNLE 86 (591)
T ss_pred EecCCcch
Confidence 99998843
No 234
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.22 E-value=2.8e-10 Score=72.36 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=60.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCC--------------------CCCCcceeEEEEEEeCCeEEEEEEEeCCCcc
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTD--------------------YDPTIEDSYLQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
..+|+++|+.++|||||+.+++...-... ...+... .............+.++|+||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~-~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDL-SFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSS-EEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccc-ccccccccccccceeeccccccc
Confidence 57899999999999999999985432110 0111111 11111212445578899999999
Q ss_pred chhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 72 EFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
+|.......+..+|++|+|+|..+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g 106 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDG 106 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTB
T ss_pred ceeecccceecccccceeeeecccc
Confidence 9998888889999999999999874
No 235
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.22 E-value=2e-10 Score=73.49 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=52.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCC---CCcceeEEEEEEeCCeEEEEEEEeCCCccchh--------hhHH---
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYD---PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS--------AMRE--- 78 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~--- 78 (115)
.+|+++|.+|||||||++.+++........ +............++. .+.+.||||-.+.. .+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999775432221 1111222223334443 68899999954321 1111
Q ss_pred HHhhcCCEEEEEEeCCC
Q psy9154 79 QYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~ 95 (115)
....+.|++|+|.++.+
T Consensus 79 ~~~~g~~~illVi~~~~ 95 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR 95 (196)
T ss_pred hcCCCCEEEEEEEECCC
Confidence 12346899999999887
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.21 E-value=8.3e-11 Score=71.53 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=48.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----chhhhHHHHhhcCCEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----EFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~~~~~~~~~~~~~~il 89 (115)
||+++|..|+|||||++++.+... .+..|....+.. .+.||||.- .+.......-.++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~-----------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD-----------NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc-----------cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998655 333443322211 247999843 222223334448999999
Q ss_pred EEeCCCHHH
Q psy9154 90 VYSVTDQQS 98 (115)
Q Consensus 90 ~~d~~~~~s 98 (115)
+.|.+++.+
T Consensus 70 l~dat~~~~ 78 (143)
T PF10662_consen 70 LQDATEPRS 78 (143)
T ss_pred EecCCCCCc
Confidence 999988644
No 237
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.21 E-value=2.4e-10 Score=73.25 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=58.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCC------CC-----CC---Ccc-eeEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVT------DY-----DP---TIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~------~~-----~~---~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
.++|+++|..++|||||+.+++...-.. .+ .+ .-+ ........+.....++.+.||||..+|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531000 00 00 001 111112223334457789999999988777
Q ss_pred HHHHhhcCCEEEEEEeCCCH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~ 96 (115)
....+..+|++++|+|....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG 101 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC
Confidence 77788899999999999874
No 238
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.21 E-value=1.9e-10 Score=81.19 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=60.4
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC------CCccee-----------------EEEEEEeC------Ce
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD------PTIEDS-----------------YLQHTEVD------DV 58 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~------~~~~~~-----------------~~~~~~~~------~~ 58 (115)
+....++|+++|+.++|||||+.++.+. +..... .|.... +......+ +.
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3445799999999999999999988543 111111 111100 00000000 01
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC----HHHHHHHHH
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD----QQSYENIKH 104 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----~~s~~~~~~ 104 (115)
...+.+|||||+.+|..........+|++++|+|+++ +++.+.+..
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~ 133 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA 133 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH
Confidence 3578999999998887655555667899999999995 445555543
No 239
>KOG0077|consensus
Probab=99.20 E-value=1.9e-10 Score=70.94 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.-|++++|-.++|||||++-+.+.... .+.||...... ...+.+- ++..+|.+|...-+..+..|+..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE-~l~Ig~m--~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE-ELSIGGM--TFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChH-HheecCc--eEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 569999999999999999999876663 34444331111 1233333 5779999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHh
Q psy9154 92 SVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~ 111 (115)
|+.+.+-|...+.-++.+..
T Consensus 96 da~d~er~~es~~eld~ll~ 115 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLS 115 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHh
Confidence 99999988888776665443
No 240
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.18 E-value=3.6e-10 Score=79.46 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=64.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MREQYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~ 81 (115)
-+|++++|.|+||||||+|.+++..-. ...+.|..+.....+.+++.+ +++.||+|..+... -....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 489999999999999999999975433 455566667777777788875 66999999765443 223457
Q ss_pred hcCCEEEEEEeCCCH
Q psy9154 82 RKGDGFLLVYSVTDQ 96 (115)
Q Consensus 82 ~~~~~~il~~d~~~~ 96 (115)
..||.+++++|.+.+
T Consensus 295 ~~ADlvL~v~D~~~~ 309 (454)
T COG0486 295 EEADLVLFVLDASQP 309 (454)
T ss_pred HhCCEEEEEEeCCCC
Confidence 799999999999995
No 241
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.17 E-value=2.1e-10 Score=74.68 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=55.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC--CC--------------C----------CCC---Ccc-eeEEEEEEeCCeEEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF--VT--------------D----------YDP---TIE-DSYLQHTEVDDVMCILD 63 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~--~~--------------~----------~~~---~~~-~~~~~~~~~~~~~~~l~ 63 (115)
+|+++|+.++|||||+.+++...- .. . +.+ .-+ ........+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999963210 00 0 000 000 00011112223446789
Q ss_pred EEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 64 ~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
+|||||+.++.......+..+|++|+|+|+++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999988877666778889999999999984
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.15 E-value=3.6e-10 Score=84.23 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=61.2
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCC-C---CCC--C----------cc---eeEEEEEEeCCeEEEEEEEeCCCcc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVT-D---YDP--T----------IE---DSYLQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~---~~~--~----------~~---~~~~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
..-+|+++|..++|||||+++++...-.. . ... + -+ +.....+.+ ...++.+|||||..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCCc
Confidence 34589999999999999999997421110 0 000 0 00 111122223 34578999999999
Q ss_pred chhhhHHHHhhcCCEEEEEEeCCCHHHHHH
Q psy9154 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYEN 101 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~il~~d~~~~~s~~~ 101 (115)
++......+++.+|++|+|+|.++......
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~ 116 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS 116 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH
Confidence 988888889999999999999988544443
No 243
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.15 E-value=2.2e-09 Score=69.60 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=48.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCC---CCcceeEEEEEEeCCeEEEEEEEeCCCccch----h----hhHH---
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYD---PTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----S----AMRE--- 78 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~----~~~~--- 78 (115)
++|+++|..|+||||+++.+++...-.... +....+......+++.. +.++||||-.+- . .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999776543321 11113333444566654 679999993321 1 1111
Q ss_pred HHhhcCCEEEEEEeCCC
Q psy9154 79 QYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~ 95 (115)
....+.+++++|+.+++
T Consensus 79 ~~~~g~ha~llVi~~~r 95 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR 95 (212)
T ss_dssp HTTT-ESEEEEEEETTB
T ss_pred hccCCCeEEEEEEecCc
Confidence 12346899999999884
No 244
>CHL00071 tufA elongation factor Tu
Probab=99.14 E-value=9.6e-10 Score=77.60 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCC------CCC--------CCcce-eEEEEEEeCCeEEEEEEEeCCC
Q psy9154 5 PNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVT------DYD--------PTIED-SYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 5 ~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~------~~~--------~~~~~-~~~~~~~~~~~~~~l~~~d~~g 69 (115)
-..+....++|+++|..++|||||++++++..-.. .+. ..-+. .......+......+.|.||||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 33455667999999999999999999998641110 000 00110 0011122333345678999999
Q ss_pred ccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 70 QEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
..+|.......+..+|++++++|..+.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 888877667778899999999999863
No 245
>PLN03126 Elongation factor Tu; Provisional
Probab=99.11 E-value=1.5e-09 Score=77.86 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCC------CCCCC--------CCCcce-eEEEEEEeCCeEEEEEEEeCCCccch
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKL------FVTDY--------DPTIED-SYLQHTEVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~------~~~~~--------~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~ 73 (115)
....++|+++|+.++|||||+.+++... ....+ ....+. .......+......+.++|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4557999999999999999999998521 11100 000110 00111122233447789999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.......+..+|++++|+|..+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 87777778899999999998874
No 246
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=3.5e-10 Score=75.02 Aligned_cols=87 Identities=20% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCC-CC-CcceeEEEEEEeCCeEEEEEEEeCCCccc-------hhhhHHH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY-DP-TIEDSYLQHTEVDDVMCILDVLDTAGQEE-------FSAMREQ 79 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-------~~~~~~~ 79 (115)
....++|+++|..|+|||||+++++.+...+.. .+ ...........+++ -.+.+||+||-.+ |+.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 345689999999999999999999976554322 11 11111111122333 3578999998544 6666777
Q ss_pred HhhcCCEEEEEEeCCCHH
Q psy9154 80 YMRKGDGFLLVYSVTDQQ 97 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~ 97 (115)
++...|.++++.+..|+.
T Consensus 114 ~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 114 YLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HhhhccEEEEeccCCCcc
Confidence 888999999999998863
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.08 E-value=1.8e-09 Score=75.98 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCC---CC---C------C--CCcc-eeEEEEEEeCCeEEEEEEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFV---TD---Y------D--PTIE-DSYLQHTEVDDVMCILDVL 65 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~---~~---~------~--~~~~-~~~~~~~~~~~~~~~l~~~ 65 (115)
|++..-......++|+++|..++|||||+.++++.... .. + . ..-+ ........+......+.+.
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 34444445567899999999999999999999863110 00 0 0 0001 0011122233344567899
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
||||..+|.......+..+|++++++|..+.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence 9999988877666778899999999999874
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.03 E-value=1.2e-09 Score=77.79 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=60.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCC------------------------CCC---Ccc-eeEEEEEEeCCeEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTD------------------------YDP---TIE-DSYLQHTEVDDVMC 60 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~------------------------~~~---~~~-~~~~~~~~~~~~~~ 60 (115)
..++|+++|+.++|||||+.+++...- ... ..+ .-+ ..............
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 468999999999999999999974211 000 000 000 00011122344556
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
.+.+.|+||+.+|.......+..+|++|+|+|+++
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 78999999999999988889999999999999987
No 249
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=6.2e-09 Score=76.57 Aligned_cols=101 Identities=24% Similarity=0.274 Sum_probs=59.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCC-CCCCC-CCCcceeEEEEEEeCCeEEEEEEEeCCCccchh-------hh---H
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKL-FVTDY-DPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS-------AM---R 77 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~---~ 77 (115)
...++|+++|.+||||||+++.+++.. +.... .+............++ ..+.++||||-.... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 346799999999999999999999865 32221 1111121122222333 468899999955421 11 1
Q ss_pred HHHhh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 78 EQYMR--KGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 78 ~~~~~--~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
..++. ..|++|+|..++.......-..+++.|.+.
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~l 230 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDV 230 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHH
Confidence 12334 479999998876433322233555555544
No 250
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.03 E-value=9.4e-09 Score=65.50 Aligned_cols=97 Identities=21% Similarity=0.328 Sum_probs=65.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCC----------ccchhhhH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAG----------QEEFSAMR 77 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~ 77 (115)
.....-|+++|-++||||||++.+++.+-......|.|-+. ..-..+++. +.+.|.|| ++.+..+.
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 33556899999999999999999999764444555566322 333444554 78999998 44556677
Q ss_pred HHHhhc---CCEEEEEEeCCCHHH--HHHHHHHHHH
Q psy9154 78 EQYMRK---GDGFLLVYSVTDQQS--YENIKHFYTQ 108 (115)
Q Consensus 78 ~~~~~~---~~~~il~~d~~~~~s--~~~~~~~~~~ 108 (115)
..|++. -.+++++.|.-.+-. -..+-+|+.+
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~ 133 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE 133 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 778774 367888888876322 2233445543
No 251
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.02 E-value=3.2e-09 Score=69.47 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=54.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-----------------------cc-ee------EE---------EEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPT-----------------------IE-DS------YL---------QHTE 54 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~-----------------------~~-~~------~~---------~~~~ 54 (115)
||+++|+.++|||||+.+|..+.|.+..... .+ +. +. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999987775421100 00 00 00 0011
Q ss_pred eCCeEEEEEEEeCCCccchhhhHHHHhh--cCCEEEEEEeCCCH
Q psy9154 55 VDDVMCILDVLDTAGQEEFSAMREQYMR--KGDGFLLVYSVTDQ 96 (115)
Q Consensus 55 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~--~~~~~il~~d~~~~ 96 (115)
.....+.+.|+||..+|.......+. .+|++++|.|+.++
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 12346789999999988665554454 68999999998764
No 252
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.02 E-value=1.9e-09 Score=76.07 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=55.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC--CC-----------CCCC--------c----------c-eeEEEEEEeCCeEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV--TD-----------YDPT--------I----------E-DSYLQHTEVDDVMC 60 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~--~~-----------~~~~--------~----------~-~~~~~~~~~~~~~~ 60 (115)
++|+++|+.++|||||+.+++...-. .. ...+ . + ..............
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999732110 00 0000 0 0 00011112223345
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
++.|+||||+.+|.......+..+|++|+|+|....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 788999999999876666678899999999998764
No 253
>PTZ00258 GTP-binding protein; Provisional
Probab=99.01 E-value=1.4e-08 Score=71.16 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=55.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCe---------------EEEEEEEeCCCcc
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDV---------------MCILDVLDTAGQE 71 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~ 71 (115)
.....++|.++|.|+||||||++++.+..... +++.+.-+...-.+.+.+. ..++++.|+||-.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34556899999999999999999997654432 3333322222222222211 2358999999943
Q ss_pred c----hhhhH---HHHhhcCCEEEEEEeCC
Q psy9154 72 E----FSAMR---EQYMRKGDGFLLVYSVT 94 (115)
Q Consensus 72 ~----~~~~~---~~~~~~~~~~il~~d~~ 94 (115)
. -..+. ...++.+|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2 11222 23466899999999974
No 254
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.00 E-value=4.3e-09 Score=73.98 Aligned_cols=87 Identities=29% Similarity=0.341 Sum_probs=62.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----------hhhhHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----------FSAMRE 78 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~~ 78 (115)
..+||+++|-|+||||||++++++..-. .....|.-+.....+..+++. +.+.||+|-.+ |.-.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999976443 233344445555666677775 55899998443 222222
Q ss_pred -HHhhcCCEEEEEEeCCCHHHH
Q psy9154 79 -QYMRKGDGFLLVYSVTDQQSY 99 (115)
Q Consensus 79 -~~~~~~~~~il~~d~~~~~s~ 99 (115)
..+..+++++++.|.+.+-+-
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchH
Confidence 357789999999999996553
No 255
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.00 E-value=4.3e-09 Score=75.55 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC--CC-----------CCCC--------cce-----------eEEEEEEeC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV--TD-----------YDPT--------IED-----------SYLQHTEVD 56 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~-----------~~~~--------~~~-----------~~~~~~~~~ 56 (115)
....++|+++|..++|||||+.+++...-. .. ...+ ..+ .........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 455799999999999999999999743211 00 0000 000 001111222
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
....++.|+||||+.+|.......+..+|++++|+|+.+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3345788999999988876555667999999999999764
No 256
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.99 E-value=2.2e-09 Score=65.41 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=36.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
+++++|.+|||||||++++.+..... .....+ ......+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876642 122222 22233344443 4789999984
No 257
>KOG1191|consensus
Probab=98.98 E-value=8.4e-09 Score=73.10 Aligned_cols=94 Identities=23% Similarity=0.281 Sum_probs=63.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-hh------h--hHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-FS------A--MREQY 80 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~------~--~~~~~ 80 (115)
-++|+++|.|+||||||+|.+.+..-. ...+.|.-+-....+.+++.+ +.+.||+|-.+ -. + -....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence 489999999999999999999976554 233334445455556666665 56999999655 11 1 22335
Q ss_pred hhcCCEEEEEEeC--CCHHHHHHHHHHHH
Q psy9154 81 MRKGDGFLLVYSV--TDQQSYENIKHFYT 107 (115)
Q Consensus 81 ~~~~~~~il~~d~--~~~~s~~~~~~~~~ 107 (115)
+..+|++++++|. ++.++-..+.+.+.
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~ 374 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILE 374 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHH
Confidence 6789999999999 55545444444433
No 258
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.96 E-value=7.1e-09 Score=74.14 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=72.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC--CeEEEEEEEeCCCccchhhhHHHHhhc---
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD--DVMCILDVLDTAGQEEFSAMREQYMRK--- 83 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~d~~g~~~~~~~~~~~~~~--- 83 (115)
...=.|+|+|+.++|||+|+.+|.+.. ...++.+ ++.+..+.-+ .....+++|...|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345689999999999999999987543 3334445 3333333222 234578999999877777777666653
Q ss_pred -CCEEEEEEeCCCHHH-HHHHHHHHHHHHhhh
Q psy9154 84 -GDGFLLVYSVTDQQS-YENIKHFYTQILRVK 113 (115)
Q Consensus 84 -~~~~il~~d~~~~~s-~~~~~~~~~~i~~~~ 113 (115)
--.+|||.|++.|=. ++.|+.|+..++++-
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i 131 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHI 131 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHH
Confidence 358889999999866 778899999888764
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.96 E-value=9.1e-09 Score=73.41 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=60.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh--CCCCCC------------------------CCC---Ccc-eeEEEEEEeCCeE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ--KLFVTD------------------------YDP---TIE-DSYLQHTEVDDVM 59 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~~------------------------~~~---~~~-~~~~~~~~~~~~~ 59 (115)
...++|+++|+.++|||||+.+++. +..... ..+ .-+ .............
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3468999999999999999999975 111100 000 000 0001112233445
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
..+.|.|+||+.+|.......+..+|++|+|+|.++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 6789999999999988778888999999999999874
No 260
>KOG3905|consensus
Probab=98.96 E-value=7.9e-09 Score=70.38 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=75.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEE--eCCeEEEEEEEeCCCccchhhhHHHHhhcC----
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTE--VDDVMCILDVLDTAGQEEFSAMREQYMRKG---- 84 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~---- 84 (115)
.-.|+++|+.++|||||+.++.+.. .+.+..+ ++.+-.+. ..+...++.+|-..|..-+..+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 4579999999999999999998775 2333333 33333332 223345788999999888888887776643
Q ss_pred CEEEEEEeCCCH-HHHHHHHHHHHHHHhhhcC
Q psy9154 85 DGFLLVYSVTDQ-QSYENIKHFYTQILRVKDK 115 (115)
Q Consensus 85 ~~~il~~d~~~~-~s~~~~~~~~~~i~~~~~~ 115 (115)
-.+||+.|++++ .-++.++.|..-+.++.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidk 160 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDK 160 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999 6699999999999887653
No 261
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.95 E-value=3e-08 Score=67.35 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc--chhh------hHHH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE--EFSA------MREQ 79 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~~~------~~~~ 79 (115)
......|++.|.|+||||||++++.+.+.. ..|+-|.-..+.-+...+ ...+|+.||||-- .... ..-.
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 344678999999999999999999876654 345544433333333333 3468899999922 2222 1122
Q ss_pred Hhh-cCCEEEEEEeCCC--HHHHHHHHHHHHHHHh
Q psy9154 80 YMR-KGDGFLLVYSVTD--QQSYENIKHFYTQILR 111 (115)
Q Consensus 80 ~~~-~~~~~il~~d~~~--~~s~~~~~~~~~~i~~ 111 (115)
.++ -.++++++||.+. .-+.+.-...+.+|..
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~ 277 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKE 277 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHH
Confidence 333 3588999999887 3445555556666554
No 262
>PRK12739 elongation factor G; Reviewed
Probab=98.95 E-value=1.1e-08 Score=76.46 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=59.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCC--CCC--CC--------------C-CCcceeEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKL--FVT--DY--------------D-PTIEDSYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~--~~~--~~--------------~-~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
....+|+++|..++|||||+++++... ... .. . ...-+.....+.++ ..++.++||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 346789999999999999999997421 100 00 0 00001111222333 456889999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCCHH
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTDQQ 97 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~~~ 97 (115)
.++.......++.+|++|+|+|..+.-
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~ 110 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGV 110 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCC
Confidence 988888888999999999999998753
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.93 E-value=8e-09 Score=70.08 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=63.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-------hHHHH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-------MREQY 80 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~ 80 (115)
+.-...++++|.|+||||||++++.+.+.. ..|+-|......-...+ ...++|+.|+||--.-.+ .....
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeee
Confidence 344678999999999999999999876654 24444444433333333 445688999997332211 22235
Q ss_pred hhcCCEEEEEEeCCCHHH-HHHHHH
Q psy9154 81 MRKGDGFLLVYSVTDQQS-YENIKH 104 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s-~~~~~~ 104 (115)
.+.||.+|+|.|+....+ .+.+..
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ 162 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIER 162 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHH
Confidence 779999999999997655 444433
No 264
>PLN03127 Elongation factor Tu; Provisional
Probab=98.93 E-value=1.2e-08 Score=72.72 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=58.7
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhC------CCCCCC------C--CCcc-eeEEEEEEeCCeEEEEEEEeCCCccc
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQK------LFVTDY------D--PTIE-DSYLQHTEVDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~------~~~~~~------~--~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~ 72 (115)
.....++|+++|..++|||||+.++.+. .....+ . ..-+ ........+.....++.|.||||..+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3455789999999999999999999622 100000 0 0001 00111223333445788999999998
Q ss_pred hhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 73 FSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 73 ~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
|..........+|++++|+|..+.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCC
Confidence 876666667789999999999763
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.92 E-value=1.1e-08 Score=75.84 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCC------------CCCCc-c--e-----------------eEEEEEEeC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTD------------YDPTI-E--D-----------------SYLQHTEVD 56 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~------------~~~~~-~--~-----------------~~~~~~~~~ 56 (115)
....++|+++|.+++|||||+.+++...-.-. ...+. . + .........
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 44568999999999999999999985321100 00000 0 0 000011122
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
....++.|+||||..+|.......+..+|++++|+|.++.
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 2334678999999988876666678899999999999764
No 266
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.92 E-value=3.9e-08 Score=61.13 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=37.1
Q ss_pred EEEEeCCCccc----hhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 62 LDVLDTAGQEE----FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 62 l~~~d~~g~~~----~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+.|.|+||-.. ...+...++..+|++|+|.+.+...+-.....|.+....
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~ 156 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP 156 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC
Confidence 67999999642 335777888999999999999996555555556555443
No 267
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.92 E-value=5.9e-08 Score=67.41 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=52.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCe---------------EEEEEEEeCCCccc----
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDV---------------MCILDVLDTAGQEE---- 72 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~---- 72 (115)
++|.++|.|+||||||.+++.+.... .+++.+.-+...-.+.+.+. ...+++.|+||-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999976632 23333322222222222221 13589999999432
Q ss_pred hhhhHHH---HhhcCCEEEEEEeCC
Q psy9154 73 FSAMREQ---YMRKGDGFLLVYSVT 94 (115)
Q Consensus 73 ~~~~~~~---~~~~~~~~il~~d~~ 94 (115)
...+... .++.+|+++.|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222222 467899999999984
No 268
>KOG1707|consensus
Probab=98.91 E-value=1.3e-08 Score=73.44 Aligned_cols=102 Identities=19% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhc
Q psy9154 5 PNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK 83 (115)
Q Consensus 5 ~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~ 83 (115)
+......-++|.++|+.++|||.+++.|++..+..++..+... +....+...++.-.+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 3455666799999999999999999999999888766555553 33455566677777788887654 332222222 67
Q ss_pred CCEEEEEEeCCCHHHHHHHHHHHHH
Q psy9154 84 GDGFLLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 84 ~~~~il~~d~~~~~s~~~~~~~~~~ 108 (115)
||+++++||.+++.||+-+..-++.
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~ 520 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNK 520 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHH
Confidence 9999999999999999988776554
No 269
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.90 E-value=1.4e-08 Score=68.22 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=50.4
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCe---------------EEEEEEEeCCCccc----hh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDV---------------MCILDVLDTAGQEE----FS 74 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~----~~ 74 (115)
|.++|.++||||||.+++.+..... +++.+.-+...-.+.+.+. ...+++.|+||-.+ ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999766532 2332222222222222221 23589999999432 22
Q ss_pred hhHHH---HhhcCCEEEEEEeCC
Q psy9154 75 AMREQ---YMRKGDGFLLVYSVT 94 (115)
Q Consensus 75 ~~~~~---~~~~~~~~il~~d~~ 94 (115)
.+... .++.+|+++.|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 23233 356799999999874
No 270
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=8.7e-09 Score=71.62 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=42.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC-CC--cceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHH-----hh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD-PT--IEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQY-----MR 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~-----~~ 82 (115)
..++|+++|++|+|||||+|.+.+-.-..... ++ ...+.............+.+||.||...-......| +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 46899999999999999999997533322111 11 111111111222222247799999954333333333 44
Q ss_pred cCCEEEEEEe
Q psy9154 83 KGDGFLLVYS 92 (115)
Q Consensus 83 ~~~~~il~~d 92 (115)
..|.+|++.+
T Consensus 114 ~yD~fiii~s 123 (376)
T PF05049_consen 114 RYDFFIIISS 123 (376)
T ss_dssp G-SEEEEEES
T ss_pred ccCEEEEEeC
Confidence 6798888776
No 271
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.88 E-value=3.3e-08 Score=67.77 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.+.+.+||++|+...+..|..++.+++++|+|+|+++-
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence 46688999999999999999999999999999999873
No 272
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.87 E-value=1.4e-08 Score=68.46 Aligned_cols=59 Identities=25% Similarity=0.486 Sum_probs=39.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC----------CCcc-eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD----------PTIE-DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
..++|+++|.+|+|||||++.+++........ .+.. ......+..++..+.+.++||||
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 36899999999999999999999765543321 1111 22233445578889999999998
No 273
>PRK12740 elongation factor G; Reviewed
Probab=98.86 E-value=9.6e-09 Score=76.49 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=58.4
Q ss_pred ECCCCCcHHHHHHHHHhCCCC--C--CC--CCCcce-----------eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHH
Q psy9154 18 VGDGGVGKSAITIQFFQKLFV--T--DY--DPTIED-----------SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQY 80 (115)
Q Consensus 18 ~G~~~vGKtsl~~~~~~~~~~--~--~~--~~~~~~-----------~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~ 80 (115)
+|+.++|||||+++++...-. . .. ..+..+ ..............+.+|||||..++......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643111 0 00 001111 001111222234678999999999888888889
Q ss_pred hhcCCEEEEEEeCCCHHHHHHHHHH
Q psy9154 81 MRKGDGFLLVYSVTDQQSYENIKHF 105 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s~~~~~~~ 105 (115)
+..+|++++++|.++..+......|
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~ 105 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW 105 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH
Confidence 9999999999999987666555444
No 274
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.83 E-value=2.8e-08 Score=75.73 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC--CC---------CC-------CCcceeEEEEEEe--------------C
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV--TD---------YD-------PTIEDSYLQHTEV--------------D 56 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~---------~~-------~~~~~~~~~~~~~--------------~ 56 (115)
....-+|+++|+.++|||||+.+++...-. .. +. .+.. .....+.+ .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~-~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCcee-cceeEEEeecccccccccccccC
Confidence 344568999999999999999999853311 00 00 0000 00011111 2
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~ 106 (115)
+....+++.||||+.+|.......++.+|++|+|+|+.+.-......-|-
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~ 144 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR 144 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH
Confidence 23567899999999999888888899999999999999864444433443
No 275
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.83 E-value=5.7e-08 Score=71.27 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=58.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch------hhhHHHHhh-
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF------SAMREQYMR- 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~------~~~~~~~~~- 82 (115)
...+|+++|+|+||||||.+++.+.... .+++....+...-.....+. ++++.|.||--.. +.....|+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3567999999999999999999976544 45554444544444444444 4789999984322 233334443
Q ss_pred -cCCEEEEEEeCCCHH
Q psy9154 83 -KGDGFLLVYSVTDQQ 97 (115)
Q Consensus 83 -~~~~~il~~d~~~~~ 97 (115)
+.|++|-+.|.+|.+
T Consensus 80 ~~~D~ivnVvDAtnLe 95 (653)
T COG0370 80 GKPDLIVNVVDATNLE 95 (653)
T ss_pred CCCCEEEEEcccchHH
Confidence 569999999999954
No 276
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.83 E-value=1.9e-08 Score=63.13 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=38.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~ 70 (115)
...++++++|.++||||||++++.+..+.. .....+... ...+..+ ..+.++||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999877642 222222221 2223333 34789999983
No 277
>PRK00007 elongation factor G; Reviewed
Probab=98.82 E-value=6.8e-08 Score=72.29 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh--CCCCC--CC--------------CCCcc-eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ--KLFVT--DY--------------DPTIE-DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~--~~--------------~~~~~-~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
....-+|+++|..++|||||+++++. +.... .. ..... +.....+.+. ...+.+.||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 33456999999999999999999974 21100 00 00000 1111222333 45788999999
Q ss_pred ccchhhhHHHHhhcCCEEEEEEeCCCHHHHH
Q psy9154 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~ 100 (115)
..++..-....+..+|++|+|+|....-.-.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~q 115 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQ 115 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchh
Confidence 9888776677888999999999988753333
No 278
>KOG3886|consensus
Probab=98.80 E-value=1e-08 Score=66.73 Aligned_cols=93 Identities=20% Similarity=0.363 Sum_probs=58.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC---CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-----hHHHHhhcC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT---DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-----MREQYMRKG 84 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----~~~~~~~~~ 84 (115)
=||+++|.+|+||||+--.+..+-... ....|+.-........+ ...+++||++||+.+.. .....++..
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 489999999999999865555332211 11122221111111122 34688999999996644 334568899
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
++.|.+||+...+-...+..+-+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk 105 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQK 105 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHH
Confidence 99999999988755555544443
No 279
>KOG0705|consensus
Probab=98.78 E-value=1e-08 Score=73.74 Aligned_cols=98 Identities=23% Similarity=0.427 Sum_probs=79.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
+...++|+.|+|+.++|||+|++||+.+.|.....+.. ..+.+.+.++++...+.+.|.+|..+ ..|..+.|++
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdav 99 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAV 99 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcC-ccceeeEEeeccceEeeeecccCCch-----hhhhhhccce
Confidence 45668999999999999999999999999977654444 44556666788888889999888444 3577899999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
|++|.+.+..+|+.++.....+..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~ 123 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSS 123 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhccc
Confidence 999999999999999887766543
No 280
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=5.2e-08 Score=60.10 Aligned_cols=55 Identities=25% Similarity=0.261 Sum_probs=37.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEE-EEeCCeEEEEEEEeCCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQH-TEVDDVMCILDVLDTAG 69 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~g 69 (115)
...+++++|.++||||||++++.+... ....++.+...... ...+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999996543 33344444322222 22222 588999998
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.76 E-value=4.8e-08 Score=73.47 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=60.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCC---------CC-------CCccee-EEEEEEeCCeEEEEEEEeCCCcc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTD---------YD-------PTIEDS-YLQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~---------~~-------~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
..-+|+++|+.++|||||+.+++...- ... +. .+.... ........+....+.+.||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 345799999999999999999985211 100 00 000000 00011224456788999999999
Q ss_pred chhhhHHHHhhcCCEEEEEEeCCCHHH
Q psy9154 72 EFSAMREQYMRKGDGFLLVYSVTDQQS 98 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~il~~d~~~~~s 98 (115)
+|.......++.+|++|+|+|....-.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~ 125 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVM 125 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCC
Confidence 998888888999999999999887533
No 282
>PTZ00416 elongation factor 2; Provisional
Probab=98.75 E-value=8.6e-08 Score=73.02 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCC-CCc-ce-----------eE--EEEEEeC--------CeEEEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYD-PTI-ED-----------SY--LQHTEVD--------DVMCILDVL 65 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~-~~~-~~-----------~~--~~~~~~~--------~~~~~l~~~ 65 (115)
..-+|+++|+.++|||||+.+++...- ..... .+. .+ .. .....+. +....+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 344999999999999999999985211 10000 000 00 00 0111121 235678999
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCCHHH
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s 98 (115)
||||..+|..-....++.+|++|+|+|..+.-.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~ 130 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC 130 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence 999999998878888999999999999988533
No 283
>KOG0090|consensus
Probab=98.73 E-value=6e-08 Score=62.35 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=62.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhh---cCCEEEE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMR---KGDGFLL 89 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~---~~~~~il 89 (115)
-.|+++|..++|||+|..++..+.+.....+... ..-...+++.. +++.|.||+.+.+.-...+++ .+-++++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 5699999999999999999998855443332222 11222333333 789999999998887777777 6889999
Q ss_pred EEeCCC-HHHHHHHHHHHHHH
Q psy9154 90 VYSVTD-QQSYENIKHFYTQI 109 (115)
Q Consensus 90 ~~d~~~-~~s~~~~~~~~~~i 109 (115)
|.|..- ..-...+.+++-++
T Consensus 115 VVDSa~f~k~vrdvaefLydi 135 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDI 135 (238)
T ss_pred EEeccccchhhHHHHHHHHHH
Confidence 998754 33344444444333
No 284
>KOG1489|consensus
Probab=98.73 E-value=1.6e-07 Score=63.66 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=68.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh----hh---HHHHhhcC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS----AM---REQYMRKG 84 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----~~---~~~~~~~~ 84 (115)
.-+-+||-|++|||||++++...+.. ..|.-|......-.+.+++.. .+.+=|.||..+-. .+ ....++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 34679999999999999999866542 223322222222223333332 38899999844322 22 23345679
Q ss_pred CEEEEEEeCCCH---HHHHHHHHHHHHHHhhhc
Q psy9154 85 DGFLLVYSVTDQ---QSYENIKHFYTQILRVKD 114 (115)
Q Consensus 85 ~~~il~~d~~~~---~s~~~~~~~~~~i~~~~~ 114 (115)
+..++|.|++.+ .-|+.++..+.++..|..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 999999999998 889999999999887754
No 285
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.71 E-value=8e-08 Score=59.43 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=34.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g 69 (115)
...+|+++|.+|||||||++++.+...... .+..+... ...+.... .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 357899999999999999999987644321 22222211 11122222 266899998
No 286
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.70 E-value=1e-07 Score=60.05 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=36.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g 69 (115)
..++++++|.++||||||++++.+...... .+..+... ...+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 358999999999999999999997654321 22222111 22223332 478999998
No 287
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=2.7e-07 Score=62.16 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=37.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
...++++++|.++||||||++++.+...... ....+ ......+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3468999999999999999999997654322 11222 11122233332 3689999996
No 288
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-07 Score=67.23 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=68.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..=|+++|+-.-|||||+..+-.......-...+. ...-..+..+ .....+.|.||||++-|..|+.+-..-+|++||
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 35689999999999999999987666532221111 2222223332 133468899999999999999999999999999
Q ss_pred EEeCCC---HHHHHHHHH
Q psy9154 90 VYSVTD---QQSYENIKH 104 (115)
Q Consensus 90 ~~d~~~---~~s~~~~~~ 104 (115)
+.|++| |++.++++.
T Consensus 85 VVa~dDGv~pQTiEAI~h 102 (509)
T COG0532 85 VVAADDGVMPQTIEAINH 102 (509)
T ss_pred EEEccCCcchhHHHHHHH
Confidence 999999 667666543
No 289
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.64 E-value=1.9e-07 Score=63.18 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=38.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCcc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
...++++++|.++||||||++++.+...... ....+.+. ...+.++. .+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3468999999999999999999997654322 22222111 22233333 37799999953
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.64 E-value=5.9e-07 Score=58.84 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=51.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
.....|+++|.+|+|||+|++.+....-........+. . .+ ......++.+.|+||.. ..+. ...+.+|++++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 44577999999999999999999864221111111111 1 11 11234567899999854 2222 34678999999
Q ss_pred EEeCCCH
Q psy9154 90 VYSVTDQ 96 (115)
Q Consensus 90 ~~d~~~~ 96 (115)
++|.+..
T Consensus 110 viDa~~~ 116 (225)
T cd01882 110 LIDASFG 116 (225)
T ss_pred EEecCcC
Confidence 9998764
No 291
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.4e-07 Score=64.01 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=60.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC--CCCCC----CC---CCcc-e-e-------------------EEEEEEeCCeEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK--LFVTD----YD---PTIE-D-S-------------------YLQHTEVDDVMC 60 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~----~~---~~~~-~-~-------------------~~~~~~~~~~~~ 60 (115)
..++++++|+..+|||||+-|++.. .+.+. +. ...+ + + ...........+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4799999999999999999999742 22110 00 0000 1 1 111223334556
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.+.+.|+||..+|-...-...+.||+.|||.|+.+.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC
Confidence 789999999999888777788899999999999886
No 292
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.56 E-value=2.3e-07 Score=59.02 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.+++++|.+|||||||++++.+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999754
No 293
>KOG1145|consensus
Probab=98.54 E-value=6.9e-07 Score=64.55 Aligned_cols=92 Identities=24% Similarity=0.269 Sum_probs=68.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.+.-=|.++|+-.-|||||+..+-+..... ....|.. .-|...+. +++ .+.|.||||+.-|..|+.+--.-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~--~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGK--SITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCC--EEEEecCCcHHHHHHHHhccCccccE
Confidence 345568999999999999999998765542 2222222 22333333 454 57799999999999999999999999
Q ss_pred EEEEEeCCC---HHHHHHHHH
Q psy9154 87 FLLVYSVTD---QQSYENIKH 104 (115)
Q Consensus 87 ~il~~d~~~---~~s~~~~~~ 104 (115)
++||+...| +++.+.++.
T Consensus 228 vVLVVAadDGVmpQT~EaIkh 248 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLEAIKH 248 (683)
T ss_pred EEEEEEccCCccHhHHHHHHH
Confidence 999999988 677776653
No 294
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.53 E-value=9.3e-07 Score=61.00 Aligned_cols=65 Identities=29% Similarity=0.483 Sum_probs=46.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCC----------CCCcc-eeEEEEEEeCCeEEEEEEEeCCCccch
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY----------DPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~ 73 (115)
.-..+.|+++|++|.|||||++.+++....... .++.. ..+...+.-++..+.|.+.||||--++
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 456799999999999999999999977444321 12222 222334455678889999999996554
No 295
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=1.5e-07 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-++++|.+|||||||++.+....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999999763
No 296
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.46 E-value=4.8e-06 Score=54.55 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=56.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC--CCCCCC---CCCcceeEEEEEEe-CCeEEEEEEEeCCCccch------hhhHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK--LFVTDY---DPTIEDSYLQHTEV-DDVMCILDVLDTAGQEEF------SAMREQ 79 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~------~~~~~~ 79 (115)
-.-|.++|++++|||+|++++.+. .|.-.. ..|.+. +...... .+....+.+.||+|.... ..+...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi-~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI-WMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccce-EEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 456889999999999999999988 665221 222221 1111111 123457889999985432 122223
Q ss_pred Hhhc--CCEEEEEEeCCC-HHHHHHHHHHHH
Q psy9154 80 YMRK--GDGFLLVYSVTD-QQSYENIKHFYT 107 (115)
Q Consensus 80 ~~~~--~~~~il~~d~~~-~~s~~~~~~~~~ 107 (115)
.+.. ++++|+..+... ....+.+....+
T Consensus 86 ~l~~llss~~i~n~~~~~~~~~~~~l~~~~~ 116 (224)
T cd01851 86 ALATLLSSVLIYNSWETILGDDLAALMGLLK 116 (224)
T ss_pred HHHHHHhCEEEEeccCcccHHHHHHHHHHHH
Confidence 3333 787777776654 444555444443
No 297
>PRK12288 GTPase RsgA; Reviewed
Probab=98.45 E-value=3.1e-07 Score=63.73 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHhCCC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
++++|.+|||||||++++++..-
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccc
Confidence 78999999999999999996543
No 298
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.43 E-value=1.5e-06 Score=53.64 Aligned_cols=55 Identities=27% Similarity=0.391 Sum_probs=35.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
....+++++|.++||||||++.+.+..-.. ....+.... .....+ ..+.+.||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 356789999999999999999999765322 111222221 112222 2478999998
No 299
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.43 E-value=3.3e-06 Score=58.86 Aligned_cols=82 Identities=18% Similarity=0.001 Sum_probs=53.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC-C-CCCCCCcceeEEEEEEeCC---------------eEEEEEEEeCCCccch--
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF-V-TDYDPTIEDSYLQHTEVDD---------------VMCILDVLDTAGQEEF-- 73 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~d~~g~~~~-- 73 (115)
+|+.++|.|+||||||.+.+.+... . .+|+.+..+...-.+.+.+ ....+.+.|.||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987765 3 2343332222222222211 2236789999985432
Q ss_pred --hh---hHHHHhhcCCEEEEEEeCC
Q psy9154 74 --SA---MREQYMRKGDGFLLVYSVT 94 (115)
Q Consensus 74 --~~---~~~~~~~~~~~~il~~d~~ 94 (115)
.. -....++.+|+++.|.+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12 3334577899999999985
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.42 E-value=3.8e-07 Score=54.19 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=45.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----chhhhHHHHhhcCCEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----EFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~~~~~~~~~~~~~~il 89 (115)
|++++|..|+|||+|.+.+.+.... +..|....+.. + -..||||.- .+.+-......++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~~d------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEFND------K----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeeccC------c----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999999876543 22333321211 1 135788733 222223334557788888
Q ss_pred EEeCCCHHH
Q psy9154 90 VYSVTDQQS 98 (115)
Q Consensus 90 ~~d~~~~~s 98 (115)
+-.+++++|
T Consensus 71 v~~and~~s 79 (148)
T COG4917 71 VHAANDPES 79 (148)
T ss_pred eecccCccc
Confidence 877777643
No 301
>KOG0468|consensus
Probab=98.42 E-value=2e-06 Score=63.59 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC---------CCcc-----eeEEE----E---EEeCCeEEEEEEEeC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD---------PTIE-----DSYLQ----H---TEVDDVMCILDVLDT 67 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~---------~~~~-----~~~~~----~---~~~~~~~~~l~~~d~ 67 (115)
.....++.++|.-..|||+|+..+....-+.-.. .+.. .+..+ . ....++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4456789999999999999999997543322111 1100 00011 1 123567788899999
Q ss_pred CCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHH
Q psy9154 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 68 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~ 108 (115)
||+-.|..-....++.+|++++++|+.+.-.+..-+-.-..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikha 245 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHA 245 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHH
Confidence 99999999888999999999999999997776554433333
No 302
>KOG1547|consensus
Probab=98.42 E-value=2.5e-06 Score=56.26 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=44.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCC---------CCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccch
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTD---------YDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~ 73 (115)
-.+|+|+++|.+|.|||||++.+...+.... ++.|.+ ......+..++...++.+.||||--++
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 3579999999999999999999986554431 112222 112333455677889999999985443
No 303
>KOG3887|consensus
Probab=98.41 E-value=5.3e-07 Score=59.42 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=56.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEE---EeCCeEEEEEEEeCCCccchhh---hHHHHhhcCCE
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT---EVDDVMCILDVLDTAGQEEFSA---MREQYMRKGDG 86 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~ 86 (115)
-+|+++|...+||||+.+-..++ .+++ .|.--.....+ .+.+.-+.+++||.|||-.+.. -....++++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 45999999999999986554443 2222 11111111111 2234556789999999987644 34567899999
Q ss_pred EEEEEeCCCHHHHHHHHH
Q psy9154 87 FLLVYSVTDQQSYENIKH 104 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~ 104 (115)
.|++.|..+. -.+.+..
T Consensus 105 LifvIDaQdd-y~eala~ 121 (347)
T KOG3887|consen 105 LIFVIDAQDD-YMEALAR 121 (347)
T ss_pred EEEEEechHH-HHHHHHH
Confidence 9999998873 3444433
No 304
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=60.32 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=38.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~ 70 (115)
...+++.++|-++||||||++++.+..-.. ..+..+.+. ...+.++.. +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAK-TSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhccccee-eCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 345789999999999999999999876632 222223222 223333433 789999993
No 305
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.40 E-value=2.4e-06 Score=66.30 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHhCCCCCC--CCCCc--ceeEEEEEEeC-------------CeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 23 VGKSAITIQFFQKLFVTD--YDPTI--EDSYLQHTEVD-------------DVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 23 vGKtsl~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~-------------~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
++||||+.++.+...... ..-|+ +.++...-... -....+.||||||+..|..++...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 349999999987666432 11222 22221110000 01123789999999999998888889999
Q ss_pred EEEEEEeCCC---HHHHHHHHH
Q psy9154 86 GFLLVYSVTD---QQSYENIKH 104 (115)
Q Consensus 86 ~~il~~d~~~---~~s~~~~~~ 104 (115)
++++|+|+++ +.+++.+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~~ 573 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAINI 573 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHHH
Confidence 9999999997 677776653
No 306
>KOG2655|consensus
Probab=98.40 E-value=1.5e-06 Score=60.25 Aligned_cols=62 Identities=31% Similarity=0.386 Sum_probs=43.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCC--------CC-CCcc-eeEEEEEEeCCeEEEEEEEeCCCc
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--------YD-PTIE-DSYLQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--------~~-~~~~-~~~~~~~~~~~~~~~l~~~d~~g~ 70 (115)
+-..|.++++|++|.|||||++.++...+..+ .. .+.. ......+.-++..+.|.+.||||-
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 34569999999999999999999987655433 11 1112 222333445678889999999983
No 307
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.35 E-value=4.3e-06 Score=57.43 Aligned_cols=99 Identities=18% Similarity=0.105 Sum_probs=66.3
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch----hhhH---HHHhhcCCE
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----SAMR---EQYMRKGDG 86 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~~~~---~~~~~~~~~ 86 (115)
|-+||-|++|||||+..+..-+.. .+|+-|......-.+.+ ...-.+.+=|.||-.+- ..+- ...+..+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 568999999999999999865543 34554444333333343 22234778999984432 2233 335567899
Q ss_pred EEEEEeCCCHHH---HHHHHHHHHHHHhhhc
Q psy9154 87 FLLVYSVTDQQS---YENIKHFYTQILRVKD 114 (115)
Q Consensus 87 ~il~~d~~~~~s---~~~~~~~~~~i~~~~~ 114 (115)
++.+.|++..+- .++.+....++..|..
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~ 271 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSP 271 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence 999999987553 7777778888877753
No 308
>KOG0462|consensus
Probab=98.35 E-value=2.6e-06 Score=61.58 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=65.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC-CCC----------------CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF-VTD----------------YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA 75 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~ 75 (115)
=++.||.+-.-|||||+.|++...- ..+ ...|+-.........+++.+.+++.||||+.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 3578889999999999999974211 111 00111100011112347789999999999999998
Q ss_pred hHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 76 MREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 76 ~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
--.+.+.-|+++||++|.+..-.-..+..++..+
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf 174 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAF 174 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHHH
Confidence 8888899999999999999865555554444433
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=3.8e-06 Score=62.87 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh--CCCCC--CCC--CCcce-----------eEEEEEEeCCe-EEEEEEEeCCCc
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ--KLFVT--DYD--PTIED-----------SYLQHTEVDDV-MCILDVLDTAGQ 70 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~--~~~--~~~~~-----------~~~~~~~~~~~-~~~l~~~d~~g~ 70 (115)
....-+|.++|+-.+|||||..+++. +.... +.. .+..+ ......++... .+.+++.||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 34456899999999999999999973 22211 000 00111 11122222223 578999999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
-+|..-....++-+|++++|+|....-....-.-|-+...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~ 126 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK 126 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh
Confidence 9999999999999999999999998666665556655443
No 310
>COG2262 HflX GTPases [General function prediction only]
Probab=98.31 E-value=1.4e-05 Score=55.96 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--hHHH-----
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--MREQ----- 79 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~~~----- 79 (115)
.......|.++|=.++|||||+|++.+.... .+...+..+.....+.+.+ ...+.+-||.|--+.-. +...
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 4455688999999999999999999854332 2222333344455555554 33466889988443211 1121
Q ss_pred -HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 80 -YMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 80 -~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
-...+|.++.|.|++++...+.+..-.+.+.+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e 299 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAE 299 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHH
Confidence 34479999999999999777777666555554
No 311
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.30 E-value=9.7e-07 Score=59.81 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
-.++++|.+|||||||++.+.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4689999999999999999987544
No 312
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=1e-06 Score=58.44 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-.++++|.+|||||||++++.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 368999999999999999999653
No 313
>PRK12289 GTPase RsgA; Reviewed
Probab=98.29 E-value=2.3e-06 Score=59.54 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~ 36 (115)
++++|.+|||||||+++++...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999653
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.8e-05 Score=55.02 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=53.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC-CCCC-----CCcceeEEEEEE-------eC----CeEEEEEEEeCCC----c
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV-TDYD-----PTIEDSYLQHTE-------VD----DVMCILDVLDTAG----Q 70 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~-----~~~~~~~~~~~~-------~~----~~~~~l~~~d~~g----~ 70 (115)
.+++.|+|.|+||||||.+.+....-. .+|+ |..+..+...+. .. -....++|.|++| .
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876643 3444 222222211111 11 1235679999987 3
Q ss_pred cchhhhHHH---HhhcCCEEEEEEeCC
Q psy9154 71 EEFSAMREQ---YMRKGDGFLLVYSVT 94 (115)
Q Consensus 71 ~~~~~~~~~---~~~~~~~~il~~d~~ 94 (115)
+.-+.+-.. -++.+|+++-|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 333333333 467899999999887
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.24 E-value=2.9e-05 Score=51.38 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
...-.++++|+.|+||||+++.+.+..+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 4456899999999999999999998653
No 316
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.18 E-value=9.8e-06 Score=58.26 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=58.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCC---CCC--CCC--cc-eeEE---------E----EEEeC----------
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFV---TDY--DPT--IE-DSYL---------Q----HTEVD---------- 56 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~---~~~--~~~--~~-~~~~---------~----~~~~~---------- 56 (115)
.....++|.++|+-..|||||++.+.+.... .+. .-| .+ .... . ....+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 3456799999999999999999999853221 110 011 01 0000 0 00000
Q ss_pred ----CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 ----DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ----~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.....+.|.|+||.++|..........+|++++|+|+.++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 0023578999999999877777778899999999999873
No 317
>KOG1954|consensus
Probab=98.18 E-value=2.2e-05 Score=54.80 Aligned_cols=102 Identities=16% Similarity=0.289 Sum_probs=62.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC-CCcc-eeEEEEEE-------------eC-------------------
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD-PTIE-DSYLQHTE-------------VD------------------- 56 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~-~~~~-~~~~~~~~-------------~~------------------- 56 (115)
..-=|+++|.-..||||+++.++.+.|+.... +... +.+..... ++
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34458999999999999999999998874221 1111 22211110 00
Q ss_pred ------Ce-EEEEEEEeCCCcc-----------chhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 57 ------DV-MCILDVLDTAGQE-----------EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 57 ------~~-~~~l~~~d~~g~~-----------~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++ --.+.+.||||.- +|.....-+...+|.|||+||....+--++...-+..++.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 01 1247899999822 23344555778899999999987644444444444444443
No 318
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1e-05 Score=59.26 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
..+..+-++++|++|+|||||++.++..-. ..++.+..-+...+.++.-.+.|.++| .+..+|.. .-+-+|.+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLV 137 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLV 137 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhhee
Confidence 344567889999999999999998874311 112222222223345666778888888 34444333 34557888
Q ss_pred EEEEeCCC
Q psy9154 88 LLVYSVTD 95 (115)
Q Consensus 88 il~~d~~~ 95 (115)
+|+.|..=
T Consensus 138 lLlIdgnf 145 (1077)
T COG5192 138 LLLIDGNF 145 (1077)
T ss_pred EEEecccc
Confidence 88877654
No 319
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=2e-06 Score=58.22 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++|.+|||||||++++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 468999999999999999985
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=98.15 E-value=3.5e-06 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-.++++|.+|||||||++.+.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998654
No 321
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.13 E-value=6.8e-06 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-++.++|.++||||||++++....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999743
No 322
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.11 E-value=7.6e-05 Score=53.05 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=63.7
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhC----CCC-------------CCCCC---CcceeEE---EEEE---eCCeEEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQK----LFV-------------TDYDP---TIEDSYL---QHTE---VDDVMCI 61 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~----~~~-------------~~~~~---~~~~~~~---~~~~---~~~~~~~ 61 (115)
+..-.+-|.++|+.++|||||+++|.+. ... ..... +..+... +.+. .++....
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 4556789999999999999999999977 222 11111 1112221 2222 2455677
Q ss_pred EEEEeCCCccc--------hhh---------------------hHHHHhh-cCCEEEEEE-eCC-----CHHHHHHHHHH
Q psy9154 62 LDVLDTAGQEE--------FSA---------------------MREQYMR-KGDGFLLVY-SVT-----DQQSYENIKHF 105 (115)
Q Consensus 62 l~~~d~~g~~~--------~~~---------------------~~~~~~~-~~~~~il~~-d~~-----~~~s~~~~~~~ 105 (115)
+.+.||+|-.. -.. -....+. ++++.|++. |.+ +..-.+.-..|
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 88999997221 111 0233444 899999998 664 12233444678
Q ss_pred HHHHHhhh
Q psy9154 106 YTQILRVK 113 (115)
Q Consensus 106 ~~~i~~~~ 113 (115)
+.++++.+
T Consensus 173 i~eLk~~~ 180 (492)
T TIGR02836 173 IEELKELN 180 (492)
T ss_pred HHHHHhcC
Confidence 88887654
No 323
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-05 Score=57.23 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=61.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC--CCCCCCCC------------Ccc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK--LFVTDYDP------------TIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMR 77 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~~~------------~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 77 (115)
=+|+|+.+-.-|||||+..++.+ .|.....- .-+ ....+...+......+++.||||+.+|..--
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 36899999999999999999853 33321110 001 1123333444455789999999999999999
Q ss_pred HHHhhcCCEEEEEEeCCC
Q psy9154 78 EQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 78 ~~~~~~~~~~il~~d~~~ 95 (115)
.+.++=.|+++|++|..+
T Consensus 86 ERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 86 ERVLSMVDGVLLLVDASE 103 (603)
T ss_pred hhhhhhcceEEEEEEccc
Confidence 999999999999999987
No 324
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.08 E-value=1.3e-05 Score=49.77 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=42.2
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 68 (115)
..+||.+-|.|||||||++.++.+.-- ...-+++.++...+..++...-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 358999999999999999999974322 22245566667777777887778888876
No 325
>KOG0082|consensus
Probab=98.04 E-value=1.1e-05 Score=55.87 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=33.5
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
..+.++|++||..-+.-|..++.+++++|+|.++++-
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY 231 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY 231 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence 5678999999998888899999999999999998873
No 326
>KOG1491|consensus
Probab=98.03 E-value=7e-05 Score=51.63 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEE---------------eCCeEEEEEEEeCCCcc
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTE---------------VDDVMCILDVLDTAGQE 71 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~l~~~d~~g~~ 71 (115)
+....+|+.|+|.|+||||||.+.+....... +++-..-+...-.+. -...+..++++|++|--
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 34467899999999999999999998766553 222211121111111 12335678999998733
Q ss_pred c----hhhhHH---HHhhcCCEEEEEEeCCC
Q psy9154 72 E----FSAMRE---QYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 72 ~----~~~~~~---~~~~~~~~~il~~d~~~ 95 (115)
+ -..+-. ..++.+|+++=|.++..
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2 222333 34667899888876644
No 327
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=1.4e-05 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++.++|.++||||||+++++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999854
No 328
>KOG4273|consensus
Probab=98.02 E-value=2.2e-05 Score=52.28 Aligned_cols=92 Identities=11% Similarity=0.164 Sum_probs=57.5
Q ss_pred eEEEECCCCC--cHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEE--EEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 14 KLVVVGDGGV--GKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMC--ILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 14 ki~i~G~~~v--GKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
.++++|.+|| ||-.|+.|+....|.....+... +++... ++++-+ .+.+.-.+--..+.......-....+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 5788999999 99999999999888765444433 322222 222221 1222221111122111112223457899
Q ss_pred EEEeCCCHHHHHHHHHHHH
Q psy9154 89 LVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~ 107 (115)
++||++..+.+..++.|+.
T Consensus 84 mvfdlse~s~l~alqdwl~ 102 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLP 102 (418)
T ss_pred EEEeccchhhhHHHHhhcc
Confidence 9999999999999999987
No 329
>KOG1486|consensus
Probab=98.01 E-value=2.3e-05 Score=52.22 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh-------hHHHH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA-------MREQY 80 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~ 80 (115)
+.-..+|+++|-|.||||||+..+...+.. ..|.-|...+..-.+.+++.. +++.|.||...-.+ ..-..
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEE
Confidence 345689999999999999999888755443 234444444445555666664 67999998443221 11123
Q ss_pred hhcCCEEEEEEeCCCHHHHH
Q psy9154 81 MRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~s~~ 100 (115)
-+.+|.++++.|.+..+.-.
T Consensus 137 ArtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQR 156 (364)
T ss_pred eecccEEEEEecCCcchhHH
Confidence 45789999999999865544
No 330
>KOG0458|consensus
Probab=97.98 E-value=5.6e-05 Score=55.11 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCC--------------------CCCCCCC----Ccc------eeEEEEEEeCCe
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKL--------------------FVTDYDP----TIE------DSYLQHTEVDDV 58 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~--------------------~~~~~~~----~~~------~~~~~~~~~~~~ 58 (115)
....+.++++|+-.+|||+|+-+++..- +.-.|.. |.. ........++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 4467999999999999999999997421 1100100 000 011222334455
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
...+.+.|+||..+|......-...+|+++||.|++-
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 5678899999999998877777888999999999876
No 331
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=7.9e-06 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
||+|+|++|+|||||++.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 332
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.97 E-value=7.5e-06 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.|+|.|.+||||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 333
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=4e-05 Score=54.98 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=66.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC--CCCC-----C----------CCCCcc-eeEEEEEE-eCCeEEEEEEEeCCCccchh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK--LFVT-----D----------YDPTIE-DSYLQHTE-VDDVMCILDVLDTAGQEEFS 74 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~--~~~~-----~----------~~~~~~-~~~~~~~~-~~~~~~~l~~~d~~g~~~~~ 74 (115)
+..++.+-.-|||||..|++.. .... + ...|+- ....-... -+++.+.|++.||||+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 4567788899999999999742 1111 0 011111 11111112 24688999999999999998
Q ss_pred hhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 75 AMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 75 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
---.+.+..|.+++|++|.+..-.-..+...|-.+.
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle 126 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 126 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH
Confidence 777778889999999999999766666666555543
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.92 E-value=1.1e-05 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=21.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.||+|+|+||+||||+++++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999866
No 335
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=3.9e-05 Score=54.47 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=58.5
Q ss_pred eEEEECCCCCcHHHHHHHHH--hCCCCCC--------CCCCcce-----------eEEEEEEeCCeEEEEEEEeCCCccc
Q psy9154 14 KLVVVGDGGVGKSAITIQFF--QKLFVTD--------YDPTIED-----------SYLQHTEVDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~--~~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~l~~~d~~g~~~ 72 (115)
..+||-+|.+|||||-..++ ++..... ...+..+ ........+...+.+++.||||+++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 45788999999999999986 2221111 1111111 1122234445566789999999999
Q ss_pred hhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 73 FSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 73 ~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
|..-..+-+..+|.+++|.|....
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKG 117 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKG 117 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccC
Confidence 999999999999999999999874
No 336
>PRK07261 topology modulation protein; Provisional
Probab=97.89 E-value=1.3e-05 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
||+|+|.+|+|||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 337
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.5e-05 Score=51.41 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=64.7
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHh---CCCC---CCCC-----C---Ccc-eeEEEEEEeCCeEEEEEEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQ---KLFV---TDYD-----P---TIE-DSYLQHTEVDDVMCILDVL 65 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~---~~~~---~~~~-----~---~~~-~~~~~~~~~~~~~~~l~~~ 65 (115)
|+.....+....++|..+|.-.-|||||...+.. ..+. ..|. | .-+ .....++.+....-.....
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEec
Confidence 6666667777889999999999999999888752 1110 0110 0 001 1223344444444456688
Q ss_pred eCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 66 d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
|+||..+|-.....---..|+.|||.+.+|
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~d 110 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCC
Confidence 999999997766666667899999999888
No 338
>KOG0461|consensus
Probab=97.87 E-value=0.00013 Score=50.69 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=53.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC----CCCCCCCCCcc----e--eEEEEE-----EeCCeEEEEEEEeCCCccchhh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK----LFVTDYDPTIE----D--SYLQHT-----EVDDVMCILDVLDTAGQEEFSA 75 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~----~~~~~~~~~~~----~--~~~~~~-----~~~~~~~~l~~~d~~g~~~~~~ 75 (115)
.++++.++|.-.+|||+|.+++..- .|.....++.. + +....+ --.++..++.+.|+||......
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 4599999999999999999999742 33222222111 1 000111 1135667889999999776544
Q ss_pred hHHHHhhcCCEEEEEEeCCCH
Q psy9154 76 MREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 76 ~~~~~~~~~~~~il~~d~~~~ 96 (115)
.....-.-.|..+++.|+...
T Consensus 86 tiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred HHHhhhheeeeeeEEEehhcc
Confidence 333333445778888888763
No 339
>KOG1144|consensus
Probab=97.87 E-value=6.4e-05 Score=56.51 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=63.4
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCC--CC--CCcceeEEEEEEe---------C----CeEEEEEEEeCCCc
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--YD--PTIEDSYLQHTEV---------D----DVMCILDVLDTAGQ 70 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--~~--~~~~~~~~~~~~~---------~----~~~~~l~~~d~~g~ 70 (115)
...+..-|+|+|+-.+|||-|+..+-+...... .. ..++.+|.....+ + -...-+.+.||||+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 456677799999999999999999986544421 11 1222333322211 1 12235789999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
+.|..++.+...-||.+|+|.|+..
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhc
Confidence 9999999999999999999999987
No 340
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.87 E-value=0.00022 Score=49.62 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=34.1
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
...+.+||++|+...+..|..++.+++++|+|.|+++
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd 219 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSE 219 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcc
Confidence 3457899999999999999999999999999999997
No 341
>PRK13768 GTPase; Provisional
Probab=97.84 E-value=8.6e-05 Score=49.52 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.1
Q ss_pred EEEEEeCCCccchh---hhHHHHhh---c--CCEEEEEEeCCCH
Q psy9154 61 ILDVLDTAGQEEFS---AMREQYMR---K--GDGFLLVYSVTDQ 96 (115)
Q Consensus 61 ~l~~~d~~g~~~~~---~~~~~~~~---~--~~~~il~~d~~~~ 96 (115)
.+.+||+||+.+.. .....+++ . ++++++++|.+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~ 141 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA 141 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence 57899999987643 33333333 2 8999999999654
No 342
>KOG3859|consensus
Probab=97.83 E-value=5.4e-05 Score=51.10 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=45.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-----eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-----DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
.+-..|+|+.+|..|.|||+|+..+.+-.|.....+-.. ......+.-.+..+++.+.||.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 345679999999999999999999999988654332221 11222334467788999999987
No 343
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.83 E-value=4e-05 Score=48.14 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=29.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 67 (115)
||++-|++|+|||||+++++..--.. .-.++-++...+.-++...-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999999988432101 11222333333344444444555554
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.81 E-value=1.7e-05 Score=47.88 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~ 33 (115)
|+++|.+|+||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 345
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.77 E-value=5.4e-05 Score=48.96 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.+....-|+|+|++|||||||++++...
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344455667889999999999999999753
No 346
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.75 E-value=2e-05 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 347
>PRK06217 hypothetical protein; Validated
Probab=97.71 E-value=3.9e-05 Score=48.62 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.||+|+|.+|+||||+++++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 348
>KOG1424|consensus
Probab=97.70 E-value=0.00011 Score=52.98 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=39.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
.+.|.+||=|+|||||+|+.+.+.+-.. -..|.+ .-+..++.+... +-+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~~---v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSPS---VCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCCC---ceecCCCC
Confidence 6899999999999999999999887643 344555 223444444433 66899998
No 349
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=5.3e-05 Score=44.89 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999865
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.66 E-value=6.2e-05 Score=40.28 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|++.|.+|+|||++++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988855
No 351
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=5.7e-05 Score=44.59 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT 39 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~ 39 (115)
-.++++|++|+|||++++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765543
No 352
>PRK03839 putative kinase; Provisional
Probab=97.63 E-value=5.9e-05 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 353
>PRK14530 adenylate kinase; Provisional
Probab=97.63 E-value=6.3e-05 Score=48.84 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.+|+|+|.+|+||||+++++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999886
No 354
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.62 E-value=7.7e-05 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+|.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
No 355
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=5.4e-05 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++++-.-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999888643
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.62 E-value=0.0006 Score=54.28 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=45.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCC------CCCcceeEEEEEEeCCeEEEEEEEeCCCcc--------chhhhHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVTDY------DPTIEDSYLQHTEVDDVMCILDVLDTAGQE--------EFSAMREQY 80 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--------~~~~~~~~~ 80 (115)
.+|||++|+||||++.+- +-.|+-.. ....+..........++ -.++||+|.- .....+..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 689999999999999877 33443211 11122222222233344 3378998821 122233333
Q ss_pred h---------hcCCEEEEEEeCCCH
Q psy9154 81 M---------RKGDGFLLVYSVTDQ 96 (115)
Q Consensus 81 ~---------~~~~~~il~~d~~~~ 96 (115)
+ +..+++|+++|+.+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~L 214 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADL 214 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHH
Confidence 2 257999999998774
No 357
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.61 E-value=0.002 Score=36.82 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=51.4
Q ss_pred EEEEC-CCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 15 LVVVG-DGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 15 i~i~G-~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
|++.| ..|+|||++...+...--. ...+. -.+..+.. +.+.+.|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56666 5799999987776532211 11111 11111211 66789999876533 233677889999999985
Q ss_pred CCHHHHHHHHHHHH
Q psy9154 94 TDQQSYENIKHFYT 107 (115)
Q Consensus 94 ~~~~s~~~~~~~~~ 107 (115)
+..++..+..+++
T Consensus 72 -~~~s~~~~~~~~~ 84 (104)
T cd02042 72 -SPLDLDGLEKLLE 84 (104)
T ss_pred -CHHHHHHHHHHHH
Confidence 5568888887776
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.59 E-value=0.0001 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|.|.|.+|+|||||++.+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999875
No 359
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00076 Score=40.07 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
-.+++.|++|+|||++++.+...-.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999986643
No 360
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.59 E-value=6.8e-05 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 361
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.59 E-value=0.00056 Score=41.38 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|++.|+.|+|||+|++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999865
No 362
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=6.1e-05 Score=45.46 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998874
No 363
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.58 E-value=6.7e-05 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 364
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.58 E-value=6.5e-05 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 365
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.58 E-value=9.9e-05 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
=|+|+|++|||||+|+++++..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 366
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.58 E-value=0.00051 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.=.|+++|+.||||||-+..+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 446899999999999877776543
No 367
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.57 E-value=8.2e-05 Score=45.14 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|+++|++|+|||+|++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 368
>PRK14532 adenylate kinase; Provisional
Probab=97.56 E-value=8.5e-05 Score=47.14 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+||||+++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.54 E-value=7.8e-05 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++|+|++|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5799999999999999887755
No 370
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=8.2e-05 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|.++|++|||||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988864
No 371
>PRK13949 shikimate kinase; Provisional
Probab=97.54 E-value=9.8e-05 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998763
No 372
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.52 E-value=9.4e-05 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.|+++|++|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 373
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.50 E-value=0.00012 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
++|.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998753
No 374
>PRK08233 hypothetical protein; Provisional
Probab=97.50 E-value=0.00014 Score=45.69 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..-|+|.|.+|+|||||++++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35678899999999999999975
No 375
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.49 E-value=0.00011 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
.|+++|.+|+||||+++++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 376
>KOG3347|consensus
Probab=97.48 E-value=0.0001 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
....+|++.|.||+|||||+.++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 567899999999999999999996
No 377
>PHA00729 NTP-binding motif containing protein
Probab=97.47 E-value=0.00017 Score=47.34 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..+|++.|++|||||+|+.++...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998754
No 378
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.47 E-value=0.00012 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+|||++++.+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 379
>PF05729 NACHT: NACHT domain
Probab=97.47 E-value=0.00012 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++|.|++|+|||+++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998754
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.47 E-value=0.0019 Score=45.09 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=22.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
..+|++.|+.|+|||||++.++..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4779999999999999999998653
No 381
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.47 E-value=0.00011 Score=43.65 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998653
No 382
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.46 E-value=0.00011 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++|+|++|+|||||++-+-.-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999988643
No 383
>KOG0448|consensus
Probab=97.46 E-value=0.0031 Score=47.24 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=57.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC-CCcce----------------------------------------
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD-PTIED---------------------------------------- 47 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~-~~~~~---------------------------------------- 47 (115)
.....||++.|+..+|||++++.++..+..+... ++...
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4457899999999999999999998765544321 10000
Q ss_pred ---eEEEEEEeCCeE-----EEEEEEeCCCcc---chhhhHHHHhhcCCEEEEEEeCCCHHHHHH
Q psy9154 48 ---SYLQHTEVDDVM-----CILDVLDTAGQE---EFSAMREQYMRKGDGFLLVYSVTDQQSYEN 101 (115)
Q Consensus 48 ---~~~~~~~~~~~~-----~~l~~~d~~g~~---~~~~~~~~~~~~~~~~il~~d~~~~~s~~~ 101 (115)
.....+.+.... -.+.+.|.||-. ...+-...+..++|++|+|...-+..+..+
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se 250 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE 250 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH
Confidence 000111111111 135678888844 334445567889999999999888555443
No 384
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.45 E-value=0.00013 Score=48.32 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=22.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
...++++++|.+|+|||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999988754
No 385
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.45 E-value=0.0022 Score=43.67 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+|+|||++++.+..
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999853
No 386
>PRK14531 adenylate kinase; Provisional
Probab=97.45 E-value=0.00015 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+|+++|.||+||||+.+++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998853
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.44 E-value=0.00014 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+||+++|++||||||+++++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.44 E-value=0.00014 Score=46.52 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|.|.|++|+|||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 389
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.43 E-value=0.00012 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=15.9
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
--+++.|++|+|||+|++++.
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999886
No 390
>KOG2484|consensus
Probab=97.43 E-value=0.0002 Score=50.34 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=37.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g 69 (115)
...+++.|+|-++|||||+++++......... .+.+ ......+.++.. +.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk~---i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDKK---IRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccCC---ceeccCCc
Confidence 45789999999999999999999977664321 2222 222233344433 67888887
No 391
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00015 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
--|+++|++|+|||||++.+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998764
No 392
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.42 E-value=0.00015 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
||+|+|.+|+||||++.++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 393
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.42 E-value=0.00015 Score=45.65 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|+++|.||+||||+++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.41 E-value=0.0029 Score=40.09 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=45.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEe--CC-CccchhhhHHHHhhcCCEEEEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLD--TA-GQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d--~~-g~~~~~~~~~~~~~~~~~~il~ 90 (115)
.+.++|++|+|||||++.+.+-.. ++.+... +++..+.+..-+ .. |+..--.+....+.+.+++++=
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~-----~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDE-----WDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-----CCCcEEE-----ECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 688999999999999998875432 2223211 122111111111 22 2333333444455566655552
Q ss_pred --EeCCCHHHHHHHHHHHHHHH
Q psy9154 91 --YSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 91 --~d~~~~~s~~~~~~~~~~i~ 110 (115)
...-|+.+-+.+.+++.++.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHH
Confidence 23334556666666666654
No 395
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.41 E-value=0.00016 Score=42.11 Aligned_cols=20 Identities=25% Similarity=0.820 Sum_probs=18.3
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999876
No 396
>PRK00625 shikimate kinase; Provisional
Probab=97.41 E-value=0.00018 Score=45.44 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 397
>PRK02496 adk adenylate kinase; Provisional
Probab=97.41 E-value=0.00018 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++++|.+|+|||++++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 398
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.41 E-value=0.00015 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.|.++|..++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 399
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.40 E-value=0.00015 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
++++|+.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999975
No 400
>KOG2485|consensus
Probab=97.40 E-value=0.00019 Score=48.97 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV 38 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~ 38 (115)
...++.+.++|-|+||||||++........
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr 169 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLR 169 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhh
Confidence 456789999999999999999988755443
No 401
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.40 E-value=0.00018 Score=45.23 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-+|+++|.+|+||||+++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999874
No 402
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.40 E-value=0.00024 Score=45.89 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..-|.++|++|+|||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46689999999999999999974
No 403
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00015 Score=50.17 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
++++|++|||||||++-+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999988874
No 404
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00017 Score=45.35 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.+|++-|.|||||||++.++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999987
No 405
>PRK10646 ADP-binding protein; Provisional
Probab=97.36 E-value=0.0032 Score=39.03 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|++-|+-|+|||+|++.++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.36 E-value=0.00016 Score=44.85 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|+++|++|+||||+++.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999988643
No 407
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.36 E-value=0.00022 Score=45.17 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-.++++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999875
No 408
>PRK13695 putative NTPase; Provisional
Probab=97.34 E-value=0.00024 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+||++.|.+|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 409
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.34 E-value=0.00022 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 410
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00021 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|+++|++|+|||||++.+.+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999988865
No 411
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.32 E-value=0.00021 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|.|.|.+|+|||||++.+..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67899999999999998864
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.32 E-value=0.0031 Score=34.97 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=47.3
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhh-HHHHhhcCCEEEEEEeC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAM-REQYMRKGDGFLLVYSV 93 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~il~~d~ 93 (115)
+++.|..|+|||+++..+...--...+ +...++ .+.+.|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999998887643211111 111111 6778999876543321 24566678999988876
Q ss_pred CCHHHHHHHHHH
Q psy9154 94 TDQQSYENIKHF 105 (115)
Q Consensus 94 ~~~~s~~~~~~~ 105 (115)
... +...+...
T Consensus 69 ~~~-~~~~~~~~ 79 (99)
T cd01983 69 EAL-AVLGARRL 79 (99)
T ss_pred chh-hHHHHHHH
Confidence 553 44444443
No 413
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00025 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.=+++.|++|||||||++++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998654
No 414
>PRK13947 shikimate kinase; Provisional
Probab=97.31 E-value=0.00026 Score=44.09 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+|||++.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 415
>PRK06547 hypothetical protein; Provisional
Probab=97.30 E-value=0.00035 Score=44.05 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.....|+|.|.+|+||||+++.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467888889999999999999964
No 416
>PF13173 AAA_14: AAA domain
Probab=97.30 E-value=0.00027 Score=42.18 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
-+++.|+.+||||+++.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999986544
No 417
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.30 E-value=0.00026 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 418
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.00028 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
+++++|.+|+|||||++.+.+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 7899999999999999999864
No 419
>PRK14528 adenylate kinase; Provisional
Probab=97.29 E-value=0.00029 Score=44.85 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
+|+++|+||+|||++++++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 420
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.29 E-value=0.00064 Score=40.60 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|++-|+-|+|||+|++.++..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
No 421
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.28 E-value=0.00029 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 422
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.27 E-value=0.00029 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 423
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.27 E-value=0.0003 Score=42.98 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
+++.|.+|+||||+++.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999988653
No 424
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.27 E-value=0.00028 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888754
No 425
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00028 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998854
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.26 E-value=0.00032 Score=44.44 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|+|+|++|+||++|+++++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 427
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00029 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-+|+++|..|+||||+.+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LA 23 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALA 23 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHH
Confidence 479999999999999999885
No 428
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.26 E-value=0.0003 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.26 E-value=0.00031 Score=45.41 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 430
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00024 Score=46.33 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~ 33 (115)
.+++|++|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4799999999999998874
No 431
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.25 E-value=0.00032 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 432
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00031 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999854
No 433
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.25 E-value=0.00032 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 434
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00027 Score=49.20 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
+.++|++||||||+++.+.+=
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999888743
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.25 E-value=0.0048 Score=39.22 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.++++|++|+|||||++.+++-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988754
No 436
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.25 E-value=0.00033 Score=45.49 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
+|+++|.+|+|||++++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la 21 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIA 21 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998886
No 437
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00057 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|+++|.||+||||++.++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 438
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00033 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 439
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.24 E-value=0.0028 Score=38.96 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
=|++-|+-|+|||||++-+...
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~ 48 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKG 48 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHH
Confidence 4788999999999999999754
No 440
>PRK14529 adenylate kinase; Provisional
Probab=97.24 E-value=0.00034 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
++|+++|.+|+||||+++++.
T Consensus 1 m~I~l~G~PGsGK~T~a~~La 21 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVK 21 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998875
No 441
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.24 E-value=0.0039 Score=43.31 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
..+|++.|..|+|||||++.++..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999988543
No 442
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00034 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999988754
No 443
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.23 E-value=0.00047 Score=43.53 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-+.++|.+|+|||||+++++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4689999999999999999973
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00035 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 445
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.23 E-value=0.00035 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 446
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00036 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988864
No 447
>PRK06762 hypothetical protein; Provisional
Probab=97.22 E-value=0.00036 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|++.|.+|+||||+++.+...
T Consensus 4 li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999988643
No 448
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.22 E-value=0.00035 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 449
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.22 E-value=0.00033 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999999754
No 450
>KOG0410|consensus
Probab=97.22 E-value=0.0035 Score=43.43 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=57.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-cceeEEEEEEeCCeEEEEEEEeCCCccchh--------hhHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPT-IEDSYLQHTEVDDVMCILDVLDTAGQEEFS--------AMREQYM 81 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~~ 81 (115)
..--|.++|=.++|||||++.+..-...+...-- ..+.-.....+-.. -.+.+-||.|--.-- +-...-.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 3456899999999999999999854443322111 11221121222111 135578888732211 1122235
Q ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
..+|.++=+.|+++|+--.....-+.-+.
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~ 284 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLN 284 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHH
Confidence 57999999999999866555444444333
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.00038 Score=43.87 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999854
No 452
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.22 E-value=0.00035 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999888754
No 453
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.21 E-value=0.00038 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.+.++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999988654
No 454
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.21 E-value=0.00034 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|+++|.+|+|||++++.+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 455
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.21 E-value=0.00038 Score=44.17 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~ 36 (115)
|+++|++||||++++++++...
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998763
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.21 E-value=0.00039 Score=46.37 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
+++|+|++|+|||+|++.+.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 789999999999999999886543
No 457
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.21 E-value=0.00037 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 458
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.21 E-value=0.00038 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|++.|.+|+||||+++.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999998754
No 459
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00034 Score=45.21 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
++++|++|||||||++-..+
T Consensus 34 vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEcCCCccHHHHHHHHhc
Confidence 78999999999999998864
No 460
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.20 E-value=0.00037 Score=44.15 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
|++.|.+||||||+++++..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
No 461
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.20 E-value=0.00036 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998865
No 462
>PTZ00301 uridine kinase; Provisional
Probab=97.20 E-value=0.00047 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.+=|.|.|.+|+|||||++++.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHH
Confidence 4668999999999999998764
No 463
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00086 Score=47.61 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=56.5
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT 94 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~ 94 (115)
|.++|..|+|||||+.-+.+- +.|..++ +.++++++ |--.-++|+++....+.+.+.+==.+...
T Consensus 352 vFliG~NGsGKST~~~LLtGL-----~~PqsG~-----I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGL-----YQPQSGE-----ILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcc-----cCCCCCc-----eeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 679999999999999777643 3344443 23444432 33345688888887777776665556656
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy9154 95 DQQSYENIKHFYTQILR 111 (115)
Q Consensus 95 ~~~s~~~~~~~~~~i~~ 111 (115)
...+.+.+..|++.+.-
T Consensus 417 ~~as~q~i~~~LqrLel 433 (546)
T COG4615 417 GKASPQLIEKWLQRLEL 433 (546)
T ss_pred cCCChHHHHHHHHHHHH
Confidence 65788899999988753
No 464
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.20 E-value=0.00036 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999988754
No 465
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.19 E-value=0.00042 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
....|.++|..|+|||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999754
No 466
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.19 E-value=0.00041 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998653
No 467
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.18 E-value=0.00042 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888865
No 468
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00041 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988754
No 469
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00038 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 470
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.18 E-value=0.0004 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988864
No 471
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.18 E-value=0.00041 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988864
No 472
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00041 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 473
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00041 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999998864
No 474
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.18 E-value=0.00039 Score=49.34 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
....-+|+|+|.+|+|||||++.+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 445678999999999999999999754
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.18 E-value=0.00043 Score=44.29 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988864
No 476
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.18 E-value=0.00025 Score=47.00 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=20.8
Q ss_pred EEEEEeCCCccchhhhHHHHh--------hcCCEEEEEEeCCC
Q psy9154 61 ILDVLDTAGQEEFSAMREQYM--------RKGDGFLLVYSVTD 95 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~--------~~~~~~il~~d~~~ 95 (115)
...++|||||.+....+...- ...-+++++.|...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~ 134 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSF 134 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEeccc
Confidence 578999999998876555443 34567888888754
No 477
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00039 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-+.++|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999986
No 478
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=0.00044 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 479
>PRK14526 adenylate kinase; Provisional
Probab=97.17 E-value=0.00045 Score=44.98 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|+++|.+|+||||+++.+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988863
No 480
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.17 E-value=0.00054 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988865
No 481
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.17 E-value=0.00036 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=20.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
--++|.|+.|+|||+|++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457888999999999999998654
No 482
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.17 E-value=0.00037 Score=44.53 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~ 33 (115)
|.|-|++|+|||||++++.
T Consensus 2 IgI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999885
No 483
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0003 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-=++++|+||||||||.+.+.
T Consensus 351 pILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred cEEEEECCCCCCchhHHHHHH
Confidence 458999999999999999985
No 484
>KOG0467|consensus
Probab=97.16 E-value=0.0013 Score=49.68 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=67.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCC------------CCcc-eeEEEEEEeCCeEEEEEEEeCCCccch
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYD------------PTIE-DSYLQHTEVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~------------~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~ 73 (115)
....=+++++.+-.-|||||+..++...-. .... .+-+ ......+..-.+.+.+++.|+||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 344557889999999999999999743211 1100 0111 111222334456778999999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCC---HHHHHHHH-HHHH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTD---QQSYENIK-HFYT 107 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~~-~~~~ 107 (115)
.+.-....+-+|++++++|+.. .++..-++ -|++
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~ 123 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE 123 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc
Confidence 9988888888999999999987 45555553 3554
No 485
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.16 E-value=0.00045 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=19.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.-|++.|.+|+||||+++.+..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999988763
No 486
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.16 E-value=0.00041 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999988754
No 487
>PRK04040 adenylate kinase; Provisional
Probab=97.15 E-value=0.00046 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..|++.|.+|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 488
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00046 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 489
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.15 E-value=0.0006 Score=44.73 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...+-|.+.|++|+|||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998864
No 490
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.15 E-value=0.00045 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998865
No 491
>KOG1532|consensus
Probab=97.15 E-value=0.00039 Score=46.98 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.9
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...+..-|+++|..|+|||||++|+..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHH
Confidence 344567899999999999999999964
No 492
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00047 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.|+|++|+|||||++.+.+-
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988864
No 493
>KOG0447|consensus
Probab=97.14 E-value=0.0036 Score=46.26 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..+.-+|+++||..+||||.+.-+..
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAq 330 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQ 330 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHH
Confidence 45677999999999999999988764
No 494
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.14 E-value=0.00048 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998854
No 495
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.14 E-value=0.00045 Score=42.20 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4689999999999999998765
No 496
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.14 E-value=0.00047 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-+|+++|.+|+|||||++.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 497
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.13 E-value=0.00046 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 498
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00049 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988865
No 499
>PRK10908 cell division protein FtsE; Provisional
Probab=97.13 E-value=0.0005 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998854
No 500
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.13 E-value=0.00053 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988764
Done!