Query psy9154
Match_columns 115
No_of_seqs 112 out of 1120
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:19:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7E-32 2.4E-36 174.0 13.5 114 1-114 1-116 (216)
2 3c5c_A RAS-like protein 12; GD 99.9 2.2E-26 7.6E-31 144.8 15.0 106 7-113 16-121 (187)
3 3kkq_A RAS-related protein M-R 99.9 5.6E-26 1.9E-30 141.8 15.5 106 7-112 13-118 (183)
4 3q3j_B RHO-related GTP-binding 99.9 9.6E-27 3.3E-31 149.4 12.3 108 6-113 21-129 (214)
5 2hup_A RAS-related protein RAB 99.9 2.9E-26 1E-30 145.7 14.0 108 6-113 23-131 (201)
6 2ew1_A RAS-related protein RAB 99.9 4.1E-26 1.4E-30 145.4 14.3 107 7-113 21-128 (201)
7 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-25 3.7E-30 141.4 15.1 102 6-113 14-115 (184)
8 2y8e_A RAB-protein 6, GH09086P 99.9 8.7E-26 3E-30 140.1 14.6 113 1-113 3-116 (179)
9 1c1y_A RAS-related protein RAP 99.9 8.9E-26 3.1E-30 138.6 14.4 104 10-113 1-104 (167)
10 2bov_A RAla, RAS-related prote 99.9 1.7E-25 5.7E-30 141.9 16.0 107 7-113 9-115 (206)
11 2iwr_A Centaurin gamma 1; ANK 99.9 1.3E-25 4.4E-30 139.6 14.8 98 9-112 4-101 (178)
12 1m7b_A RND3/RHOE small GTP-bin 99.9 5E-26 1.7E-30 142.6 12.7 104 9-112 4-108 (184)
13 1u8z_A RAS-related protein RAL 99.9 3.2E-25 1.1E-29 136.0 15.9 104 10-113 2-105 (168)
14 2a5j_A RAS-related protein RAB 99.9 1.4E-25 4.8E-30 141.3 14.6 109 4-112 13-122 (191)
15 1ek0_A Protein (GTP-binding pr 99.9 3.9E-25 1.3E-29 136.0 16.1 103 11-113 2-105 (170)
16 1kao_A RAP2A; GTP-binding prot 99.9 4.4E-25 1.5E-29 135.3 16.0 104 10-113 1-104 (167)
17 3reg_A RHO-like small GTPase; 99.9 1.1E-25 3.7E-30 142.0 13.5 105 8-112 19-124 (194)
18 2fn4_A P23, RAS-related protei 99.9 4E-25 1.4E-29 137.3 15.6 105 8-112 5-109 (181)
19 2j1l_A RHO-related GTP-binding 99.9 6.1E-26 2.1E-30 145.5 12.2 106 8-113 30-136 (214)
20 1gwn_A RHO-related GTP-binding 99.9 7.4E-26 2.5E-30 144.5 12.5 106 8-113 24-130 (205)
21 2efe_B Small GTP-binding prote 99.9 4.9E-25 1.7E-29 137.1 15.8 107 7-113 7-114 (181)
22 1r2q_A RAS-related protein RAB 99.9 5.2E-25 1.8E-29 135.4 15.6 105 9-113 3-108 (170)
23 1z06_A RAS-related protein RAB 99.9 3.5E-25 1.2E-29 139.1 15.0 105 8-112 16-122 (189)
24 2a9k_A RAS-related protein RAL 99.9 6.1E-25 2.1E-29 137.1 15.8 107 7-113 13-119 (187)
25 2hxs_A RAB-26, RAS-related pro 99.9 9.9E-26 3.4E-30 139.9 12.1 104 9-112 3-108 (178)
26 3tkl_A RAS-related protein RAB 99.9 4.9E-25 1.7E-29 138.7 15.5 106 8-113 12-118 (196)
27 2oil_A CATX-8, RAS-related pro 99.9 3.6E-25 1.2E-29 139.4 14.8 107 6-112 19-126 (193)
28 2il1_A RAB12; G-protein, GDP, 99.9 2.9E-25 9.9E-30 140.1 14.2 107 7-113 21-128 (192)
29 2bme_A RAB4A, RAS-related prot 99.9 4.1E-25 1.4E-29 138.1 14.6 106 8-113 6-112 (186)
30 1z0j_A RAB-22, RAS-related pro 99.9 8.1E-25 2.8E-29 134.7 15.6 104 9-112 3-107 (170)
31 1mh1_A RAC1; GTP-binding, GTPa 99.9 3E-25 1E-29 138.5 13.8 104 9-112 2-106 (186)
32 2j0v_A RAC-like GTP-binding pr 99.9 1.3E-25 4.3E-30 143.4 12.3 103 10-112 7-110 (212)
33 2atx_A Small GTP binding prote 99.9 1.4E-25 4.9E-30 141.3 12.1 104 9-112 15-119 (194)
34 3t5g_A GTP-binding protein RHE 99.9 2.2E-25 7.5E-30 138.9 12.8 103 10-112 4-106 (181)
35 1z0f_A RAB14, member RAS oncog 99.9 9.2E-25 3.1E-29 135.4 15.6 106 8-113 11-117 (179)
36 4dsu_A GTPase KRAS, isoform 2B 99.9 8.8E-25 3E-29 136.7 15.5 103 11-113 3-105 (189)
37 2q3h_A RAS homolog gene family 99.9 1.6E-25 5.5E-30 141.8 12.2 106 8-113 16-122 (201)
38 2fg5_A RAB-22B, RAS-related pr 99.9 5E-25 1.7E-29 138.9 14.4 108 6-113 17-125 (192)
39 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.4E-25 2.2E-29 136.1 14.5 106 8-113 3-109 (177)
40 1z2a_A RAS-related protein RAB 99.9 6.3E-25 2.1E-29 135.0 14.2 104 10-113 3-107 (168)
41 2p5s_A RAS and EF-hand domain 99.9 4.7E-25 1.6E-29 139.7 13.7 105 8-112 24-129 (199)
42 1z08_A RAS-related protein RAB 99.9 3.3E-25 1.1E-29 136.6 12.5 105 9-113 3-108 (170)
43 3cpj_B GTP-binding protein YPT 99.9 2.6E-25 9E-30 143.2 12.3 112 1-112 1-114 (223)
44 1zbd_A Rabphilin-3A; G protein 99.9 1.8E-24 6.1E-29 137.2 15.9 105 9-113 5-110 (203)
45 2ce2_X GTPase HRAS; signaling 99.9 1.7E-24 6E-29 132.3 15.2 103 11-113 2-104 (166)
46 3cbq_A GTP-binding protein REM 99.9 4.4E-25 1.5E-29 139.8 12.8 106 8-113 19-126 (195)
47 2bcg_Y Protein YP2, GTP-bindin 99.9 6.4E-25 2.2E-29 139.6 13.5 105 9-113 5-110 (206)
48 1x3s_A RAS-related protein RAB 99.9 6.9E-25 2.4E-29 137.9 13.3 105 8-112 11-116 (195)
49 3tw8_B RAS-related protein RAB 99.9 6E-25 2E-29 136.5 12.8 106 8-113 5-111 (181)
50 3con_A GTPase NRAS; structural 99.9 1.4E-24 4.9E-29 136.2 14.6 107 7-113 16-122 (190)
51 2gf9_A RAS-related protein RAB 99.9 1.1E-24 3.9E-29 136.8 14.2 107 7-113 17-124 (189)
52 2atv_A RERG, RAS-like estrogen 99.9 1.8E-24 6.2E-29 136.6 15.1 104 9-113 25-128 (196)
53 2erx_A GTP-binding protein DI- 99.9 1.9E-24 6.5E-29 133.1 14.8 103 11-113 2-104 (172)
54 3clv_A RAB5 protein, putative; 99.9 2.2E-24 7.7E-29 135.9 15.3 104 10-113 5-146 (208)
55 2fu5_C RAS-related protein RAB 99.9 9.4E-26 3.2E-30 140.8 8.6 104 9-112 5-109 (183)
56 2o52_A RAS-related protein RAB 99.9 4.6E-25 1.6E-29 140.0 11.8 106 8-113 21-127 (200)
57 1g16_A RAS-related protein SEC 99.9 5.9E-25 2E-29 135.3 11.6 103 11-113 2-105 (170)
58 2gf0_A GTP-binding protein DI- 99.9 2.5E-24 8.5E-29 135.8 14.6 105 9-113 5-109 (199)
59 3gj0_A GTP-binding nuclear pro 99.9 2.8E-25 9.6E-30 142.8 10.3 110 4-113 7-117 (221)
60 4gzl_A RAS-related C3 botulinu 99.9 8.5E-25 2.9E-29 139.2 12.3 105 8-112 26-131 (204)
61 2g6b_A RAS-related protein RAB 99.9 2.6E-24 8.8E-29 133.7 14.0 107 7-113 5-113 (180)
62 3bc1_A RAS-related protein RAB 99.9 4.2E-24 1.4E-28 133.9 14.9 106 8-113 7-123 (195)
63 3oes_A GTPase rhebl1; small GT 99.9 4.7E-25 1.6E-29 139.9 10.6 105 8-112 20-124 (201)
64 2nzj_A GTP-binding protein REM 99.9 2.9E-24 9.8E-29 132.9 13.8 103 10-112 2-106 (175)
65 3cph_A RAS-related protein SEC 99.9 3E-24 1E-28 136.8 14.2 106 8-113 16-122 (213)
66 3bwd_D RAC-like GTP-binding pr 99.9 1.4E-25 4.9E-30 139.7 7.7 103 10-112 6-109 (182)
67 2gco_A H9, RHO-related GTP-bin 99.9 1.8E-24 6E-29 137.3 12.9 104 9-112 22-126 (201)
68 3dz8_A RAS-related protein RAB 99.9 1.8E-25 6.3E-30 140.7 7.5 106 8-113 19-125 (191)
69 1vg8_A RAS-related protein RAB 99.9 2E-24 6.9E-29 137.0 12.1 105 9-113 5-110 (207)
70 2fv8_A H6, RHO-related GTP-bin 99.9 2.1E-24 7E-29 137.6 12.0 103 10-112 23-126 (207)
71 1ky3_A GTP-binding protein YPT 99.9 1.4E-24 4.8E-29 134.9 10.8 105 9-113 5-111 (182)
72 2g3y_A GTP-binding protein GEM 99.9 4.1E-24 1.4E-28 137.2 13.2 105 8-112 33-140 (211)
73 2yc2_C IFT27, small RAB-relate 99.9 3E-25 1E-29 140.7 7.7 104 10-113 18-126 (208)
74 3q85_A GTP-binding protein REM 99.9 3.5E-24 1.2E-28 131.9 12.2 102 12-113 2-105 (169)
75 3q72_A GTP-binding protein RAD 99.9 3.5E-24 1.2E-28 131.6 11.8 100 12-112 2-101 (166)
76 4bas_A ADP-ribosylation factor 99.9 1.6E-24 5.5E-29 136.7 10.1 104 6-112 11-115 (199)
77 2f7s_A C25KG, RAS-related prot 99.9 3.7E-24 1.3E-28 137.0 10.7 105 8-112 21-136 (217)
78 2cjw_A GTP-binding protein GEM 99.9 2E-23 7E-28 131.9 12.9 103 10-112 4-109 (192)
79 1zd9_A ADP-ribosylation factor 99.9 1.6E-23 5.6E-28 131.5 11.8 102 8-112 18-119 (188)
80 3t1o_A Gliding protein MGLA; G 99.9 1.2E-24 4.3E-29 136.7 6.4 104 6-110 8-130 (198)
81 2zej_A Dardarin, leucine-rich 99.9 5.3E-24 1.8E-28 133.5 8.2 101 12-112 2-109 (184)
82 3l0i_B RAS-related protein RAB 99.9 4E-25 1.4E-29 140.0 2.7 106 8-113 29-135 (199)
83 1r8s_A ADP-ribosylation factor 99.9 3E-23 1E-27 127.2 11.0 96 13-112 1-96 (164)
84 2f9l_A RAB11B, member RAS onco 99.9 1.4E-22 4.9E-27 128.3 14.1 103 10-112 3-106 (199)
85 4djt_A GTP-binding nuclear pro 99.9 1.7E-23 5.8E-28 134.0 9.8 106 8-113 7-114 (218)
86 2h57_A ADP-ribosylation factor 99.9 4.1E-23 1.4E-27 129.8 11.3 103 7-112 16-119 (190)
87 1oix_A RAS-related protein RAB 99.9 2.1E-22 7.1E-27 127.1 13.7 105 8-112 25-130 (191)
88 1zj6_A ADP-ribosylation factor 99.9 5.1E-23 1.7E-27 129.0 10.2 99 10-112 14-112 (187)
89 2wkq_A NPH1-1, RAS-related C3 99.9 1.7E-22 5.8E-27 136.2 13.3 102 11-112 154-256 (332)
90 1f6b_A SAR1; gtpases, N-termin 99.9 4.5E-23 1.6E-27 130.7 9.8 99 10-112 23-121 (198)
91 1m2o_B GTP-binding protein SAR 99.9 1.4E-22 4.7E-27 127.7 11.9 99 10-112 21-119 (190)
92 2h17_A ADP-ribosylation factor 99.9 3.3E-23 1.1E-27 129.4 8.5 103 6-112 15-117 (181)
93 1ksh_A ARF-like protein 2; sma 99.9 2E-22 6.9E-27 126.0 11.9 99 10-112 16-114 (186)
94 1fzq_A ADP-ribosylation factor 99.9 1.2E-22 4.1E-27 127.1 10.4 98 10-111 14-111 (181)
95 2b6h_A ADP-ribosylation factor 99.9 1.8E-22 6.1E-27 127.4 10.9 100 9-112 26-125 (192)
96 3th5_A RAS-related C3 botulinu 99.8 1.2E-24 4E-29 138.3 0.0 103 10-112 28-131 (204)
97 1upt_A ARL1, ADP-ribosylation 99.9 6.3E-22 2.2E-26 121.9 11.9 99 10-112 5-103 (171)
98 3llu_A RAS-related GTP-binding 99.9 1.7E-22 5.9E-27 127.7 8.8 104 6-112 14-126 (196)
99 3r7w_A Gtpase1, GTP-binding pr 99.9 1.1E-21 3.6E-26 132.2 12.2 100 11-112 2-109 (307)
100 2fh5_B SR-beta, signal recogni 99.9 1.7E-21 5.9E-26 124.3 12.5 99 9-109 4-105 (214)
101 1moz_A ARL1, ADP-ribosylation 99.9 3.6E-22 1.2E-26 124.4 6.2 99 10-112 16-114 (183)
102 2x77_A ADP-ribosylation factor 99.9 4.2E-22 1.4E-26 124.9 5.6 99 10-112 20-118 (189)
103 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-21 4.4E-26 132.3 8.2 95 14-112 1-103 (331)
104 3c5h_A Glucocorticoid receptor 99.8 3.2E-22 1.1E-26 131.5 2.6 108 5-112 12-193 (255)
105 3lvq_E ARF-GAP with SH3 domain 99.8 6.2E-20 2.1E-24 130.2 11.2 100 9-112 319-418 (497)
106 3o47_A ADP-ribosylation factor 99.8 8.5E-21 2.9E-25 128.8 6.2 99 10-112 163-261 (329)
107 2ged_A SR-beta, signal recogni 99.8 2.2E-20 7.6E-25 117.3 6.7 96 9-112 45-148 (193)
108 2wji_A Ferrous iron transport 99.8 8.5E-19 2.9E-23 108.0 13.5 96 11-111 2-106 (165)
109 1nrj_B SR-beta, signal recogni 99.8 2.4E-20 8.1E-25 119.3 6.5 97 8-112 8-112 (218)
110 2lkc_A Translation initiation 99.8 1E-19 3.4E-24 112.7 8.4 93 9-103 5-101 (178)
111 2wjg_A FEOB, ferrous iron tran 99.8 2.5E-18 8.7E-23 107.4 12.0 99 8-111 3-110 (188)
112 2gj8_A MNME, tRNA modification 99.8 1.3E-18 4.4E-23 108.0 10.3 98 12-112 4-111 (172)
113 3dpu_A RAB family protein; roc 99.8 7.1E-19 2.4E-23 125.8 7.7 103 8-113 37-148 (535)
114 1svi_A GTP-binding protein YSX 99.8 3.1E-18 1.1E-22 107.5 9.0 91 9-102 20-124 (195)
115 2qu8_A Putative nucleolar GTP- 99.8 7.4E-18 2.5E-22 108.7 10.9 99 10-111 27-138 (228)
116 2dyk_A GTP-binding protein; GT 99.8 2E-17 6.7E-22 100.7 12.1 84 13-98 2-94 (161)
117 2cxx_A Probable GTP-binding pr 99.8 1.3E-18 4.4E-23 108.7 6.6 90 13-107 2-104 (190)
118 3def_A T7I23.11 protein; chlor 99.7 5.1E-17 1.7E-21 107.0 11.4 101 9-112 33-145 (262)
119 3iev_A GTP-binding protein ERA 99.7 2.8E-17 9.5E-22 110.7 9.5 104 7-111 5-120 (308)
120 3iby_A Ferrous iron transport 99.7 8.9E-17 3E-21 105.7 10.4 93 13-107 2-107 (256)
121 3lxx_A GTPase IMAP family memb 99.7 3.3E-16 1.1E-20 101.7 12.2 87 8-96 25-125 (239)
122 3a1s_A Iron(II) transport prot 99.7 2.5E-16 8.5E-21 103.7 11.6 97 10-111 3-108 (258)
123 3pqc_A Probable GTP-binding pr 99.7 4.7E-16 1.6E-20 97.2 12.3 97 8-108 19-131 (195)
124 3i8s_A Ferrous iron transport 99.7 2.3E-16 8E-21 104.6 11.0 96 11-108 2-110 (274)
125 1wf3_A GTP-binding protein; GT 99.7 1.7E-16 5.9E-21 106.5 10.5 98 10-111 5-113 (301)
126 3k53_A Ferrous iron transport 99.7 3.1E-16 1.1E-20 103.7 11.0 97 10-111 1-106 (271)
127 3b1v_A Ferrous iron uptake tra 99.7 1.6E-16 5.6E-21 105.3 9.2 94 12-111 3-105 (272)
128 2hjg_A GTP-binding protein ENG 99.7 7.2E-17 2.5E-21 113.1 7.8 99 10-111 173-284 (436)
129 2xtp_A GTPase IMAP family memb 99.7 6.2E-16 2.1E-20 101.5 10.8 100 8-109 18-132 (260)
130 3lxw_A GTPase IMAP family memb 99.7 8.1E-16 2.8E-20 100.6 10.1 86 8-95 17-117 (247)
131 4dhe_A Probable GTP-binding pr 99.7 2.5E-16 8.4E-21 100.8 7.3 102 8-110 25-141 (223)
132 1mky_A Probable GTP-binding pr 99.7 1.3E-15 4.5E-20 106.8 11.3 93 13-107 2-107 (439)
133 1h65_A Chloroplast outer envel 99.6 5.5E-16 1.9E-20 102.4 8.5 100 10-112 37-148 (270)
134 3gee_A MNME, tRNA modification 99.6 2.4E-16 8E-21 111.6 6.7 92 12-105 233-334 (476)
135 3sjy_A Translation initiation 99.6 1.1E-14 3.9E-19 101.0 13.6 105 8-112 4-127 (403)
136 1lnz_A SPO0B-associated GTP-bi 99.6 2.7E-15 9.3E-20 102.3 8.0 100 13-113 159-269 (342)
137 4dcu_A GTP-binding protein ENG 99.6 4.4E-15 1.5E-19 104.5 8.7 100 9-111 192-304 (456)
138 2hjg_A GTP-binding protein ENG 99.6 1.4E-15 4.9E-20 106.5 6.1 88 12-101 3-100 (436)
139 4dcu_A GTP-binding protein ENG 99.6 1.1E-15 3.7E-20 107.7 5.3 88 6-95 17-114 (456)
140 1jny_A EF-1-alpha, elongation 99.6 5.3E-16 1.8E-20 108.7 3.5 97 11-111 5-134 (435)
141 1xzp_A Probable tRNA modificat 99.6 3.2E-15 1.1E-19 105.9 7.2 89 13-103 244-343 (482)
142 3qq5_A Small GTP-binding prote 99.6 3.6E-15 1.2E-19 104.2 6.9 101 8-112 30-139 (423)
143 3p26_A Elongation factor 1 alp 99.6 9.2E-15 3.1E-19 103.6 7.7 91 10-100 31-151 (483)
144 3j2k_7 ERF3, eukaryotic polype 99.6 9E-14 3.1E-18 97.5 12.7 87 8-96 13-131 (439)
145 4fid_A G protein alpha subunit 99.6 2.1E-14 7.3E-19 97.7 9.1 54 59-112 160-223 (340)
146 2qtf_A Protein HFLX, GTP-bindi 99.5 1.2E-13 4.2E-18 94.9 12.0 98 12-112 178-288 (364)
147 3t5d_A Septin-7; GTP-binding p 99.5 3.3E-14 1.1E-18 94.1 8.8 87 9-95 5-127 (274)
148 1wb1_A Translation elongation 99.5 5.2E-14 1.8E-18 99.8 10.2 93 8-103 15-119 (482)
149 3geh_A MNME, tRNA modification 99.5 6.8E-15 2.3E-19 103.8 5.2 96 12-110 224-329 (462)
150 1jal_A YCHF protein; nucleotid 99.5 5.6E-14 1.9E-18 96.3 9.5 98 13-110 3-133 (363)
151 2e87_A Hypothetical protein PH 99.5 1E-13 3.5E-18 94.9 10.7 101 10-112 165-277 (357)
152 3cb4_D GTP-binding protein LEP 99.5 7.8E-14 2.7E-18 101.0 10.5 100 11-110 3-121 (599)
153 1s0u_A EIF-2-gamma, translatio 99.5 1.9E-13 6.6E-18 95.0 12.1 96 10-105 6-130 (408)
154 1n0u_A EF-2, elongation factor 99.5 8.4E-14 2.9E-18 104.2 10.7 100 10-109 17-147 (842)
155 2ywe_A GTP-binding protein LEP 99.5 1.5E-13 5.2E-18 99.5 11.6 99 11-110 5-123 (600)
156 1dar_A EF-G, elongation factor 99.5 3.8E-14 1.3E-18 104.1 8.5 104 1-107 1-124 (691)
157 1kk1_A EIF2gamma; initiation o 99.5 3.6E-13 1.2E-17 93.7 12.7 98 8-105 6-132 (410)
158 2c78_A Elongation factor TU-A; 99.5 9.9E-14 3.4E-18 96.4 9.9 103 8-111 7-125 (405)
159 1zun_B Sulfate adenylate trans 99.5 1.8E-13 6.2E-18 95.8 10.7 99 10-109 22-152 (434)
160 2qag_A Septin-2, protein NEDD5 99.5 1.5E-14 5.2E-19 99.2 5.1 100 10-109 35-171 (361)
161 1g7s_A Translation initiation 99.5 7.1E-15 2.4E-19 106.4 3.6 94 11-104 4-117 (594)
162 1mky_A Probable GTP-binding pr 99.5 1.7E-13 5.8E-18 96.1 10.2 90 10-101 178-281 (439)
163 3izy_P Translation initiation 99.5 3.8E-16 1.3E-20 111.7 -4.2 92 11-103 3-95 (537)
164 1wxq_A GTP-binding protein; st 99.5 2.3E-13 7.8E-18 94.5 9.5 99 13-111 1-140 (397)
165 1pui_A ENGB, probable GTP-bind 99.5 8.5E-14 2.9E-18 88.2 6.7 94 11-107 25-134 (210)
166 1d2e_A Elongation factor TU (E 99.5 1.4E-13 4.7E-18 95.5 8.0 86 12-97 3-103 (397)
167 2qpt_A EH domain-containing pr 99.5 8.1E-14 2.8E-18 100.2 7.0 101 9-111 62-216 (550)
168 1cip_A Protein (guanine nucleo 99.5 3.4E-13 1.1E-17 92.3 9.6 54 59-112 192-255 (353)
169 2ohf_A Protein OLA1, GTP-bindi 99.5 1.2E-13 4.1E-18 95.6 7.3 91 11-101 21-134 (396)
170 3ohm_A Guanine nucleotide-bind 99.5 1.1E-12 3.7E-17 89.0 11.5 54 59-112 166-229 (327)
171 1f60_A Elongation factor EEF1A 99.5 3E-13 1E-17 95.3 8.9 84 10-96 5-121 (458)
172 2aka_B Dynamin-1; fusion prote 99.5 5.9E-13 2E-17 88.6 9.6 102 8-109 22-188 (299)
173 3tr5_A RF-3, peptide chain rel 99.5 2.1E-14 7.1E-19 102.8 2.7 93 11-106 12-128 (528)
174 1ega_A Protein (GTP-binding pr 99.4 6.3E-14 2.2E-18 94.0 4.8 84 10-95 6-100 (301)
175 3izq_1 HBS1P, elongation facto 99.4 5.6E-13 1.9E-17 96.8 9.7 84 10-96 165-281 (611)
176 3avx_A Elongation factor TS, e 99.4 1.5E-13 5.3E-18 104.9 6.5 105 5-110 289-408 (1289)
177 1r5b_A Eukaryotic peptide chai 99.4 6.3E-14 2.2E-18 99.0 3.7 84 10-96 41-157 (467)
178 1zo1_I IF2, translation initia 99.4 1.3E-14 4.5E-19 103.1 0.2 90 11-102 3-96 (501)
179 2elf_A Protein translation elo 99.4 2.3E-13 7.8E-18 93.7 6.2 87 14-111 23-109 (370)
180 2h5e_A Peptide chain release f 99.4 3.5E-13 1.2E-17 96.5 6.8 88 10-97 11-119 (529)
181 2rdo_7 EF-G, elongation factor 99.4 4.3E-12 1.5E-16 93.5 12.5 97 9-106 7-128 (704)
182 2xex_A Elongation factor G; GT 99.4 7.2E-13 2.4E-17 97.5 8.2 96 9-107 7-122 (693)
183 3t34_A Dynamin-related protein 99.4 1.4E-12 4.7E-17 89.3 9.1 86 11-96 33-185 (360)
184 2j69_A Bacterial dynamin-like 99.4 3.6E-12 1.2E-16 93.8 11.5 100 11-110 68-227 (695)
185 1jwy_B Dynamin A GTPase domain 99.4 2.4E-12 8.2E-17 86.3 8.0 30 9-38 21-50 (315)
186 2dby_A GTP-binding protein; GD 99.4 7.3E-12 2.5E-16 86.1 10.4 82 13-95 2-111 (368)
187 2dy1_A Elongation factor G; tr 99.4 4E-12 1.4E-16 93.2 9.4 99 11-110 8-123 (665)
188 3mca_A HBS1, elongation factor 99.3 7.6E-13 2.6E-17 95.8 0.8 86 9-95 174-290 (592)
189 2xtz_A Guanine nucleotide-bind 99.2 2.5E-12 8.4E-17 88.1 1.7 55 58-112 181-245 (354)
190 2qnr_A Septin-2, protein NEDD5 99.2 1E-11 3.6E-16 83.3 4.3 70 9-78 15-101 (301)
191 1azs_C GS-alpha; complex (lyas 99.2 1E-10 3.6E-15 81.2 9.1 53 60-112 217-279 (402)
192 2qag_C Septin-7; cell cycle, c 99.2 1.8E-11 6.2E-16 85.4 5.0 103 8-110 27-165 (418)
193 1udx_A The GTP-binding protein 99.2 1.3E-10 4.5E-15 81.0 9.2 97 14-112 159-263 (416)
194 4a9a_A Ribosome-interacting GT 99.1 1.1E-09 3.9E-14 75.4 12.3 86 11-98 71-164 (376)
195 1u0l_A Probable GTPase ENGC; p 99.1 2.7E-12 9.2E-17 86.1 -1.0 80 27-111 32-113 (301)
196 2x2e_A Dynamin-1; nitration, h 99.1 1.9E-10 6.5E-15 78.6 6.4 29 10-38 29-57 (353)
197 1zcb_A G alpha I/13; GTP-bindi 99.0 8.2E-10 2.8E-14 75.8 7.5 54 59-112 200-263 (362)
198 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.4E-09 4.9E-14 75.3 8.5 84 12-95 20-127 (392)
199 3vqt_A RF-3, peptide chain rel 98.9 2.2E-09 7.6E-14 77.2 7.3 94 12-108 31-148 (548)
200 4fn5_A EF-G 1, elongation fact 98.8 4.9E-08 1.7E-12 72.2 9.9 98 13-110 14-135 (709)
201 3j25_A Tetracycline resistance 98.7 5.5E-09 1.9E-13 76.4 2.9 94 14-107 4-114 (638)
202 3cnl_A YLQF, putative uncharac 98.7 9E-09 3.1E-13 67.8 3.5 56 13-72 100-156 (262)
203 2www_A Methylmalonic aciduria 98.6 4.6E-09 1.6E-13 71.8 0.7 24 11-34 73-96 (349)
204 1puj_A YLQF, conserved hypothe 98.6 5.4E-08 1.9E-12 64.7 5.6 58 10-71 118-176 (282)
205 2hf9_A Probable hydrogenase ni 98.6 3.1E-09 1E-13 67.9 -1.6 35 11-45 37-71 (226)
206 3p32_A Probable GTPase RV1496/ 98.6 4.4E-08 1.5E-12 67.0 4.1 24 11-34 78-101 (355)
207 1bif_A 6-phosphofructo-2-kinas 98.6 2E-09 7E-14 76.0 -2.6 101 10-112 37-148 (469)
208 3zvr_A Dynamin-1; hydrolase, D 98.5 9.7E-07 3.3E-11 65.7 9.7 30 9-38 48-77 (772)
209 2wsm_A Hydrogenase expression/ 98.4 4.6E-08 1.6E-12 62.2 1.1 24 12-35 30-53 (221)
210 2p67_A LAO/AO transport system 98.4 6.6E-08 2.3E-12 65.8 1.7 36 60-98 149-184 (341)
211 1f5n_A Interferon-induced guan 98.3 7.3E-07 2.5E-11 64.7 5.2 63 10-72 36-103 (592)
212 1yrb_A ATP(GTP)binding protein 98.3 2.3E-06 8E-11 55.6 6.5 26 8-33 10-35 (262)
213 2qm8_A GTPase/ATPase; G protei 98.1 1.7E-07 5.7E-12 63.8 -1.5 22 12-33 55-76 (337)
214 3ec1_A YQEH GTPase; atnos1, at 98.0 5.1E-06 1.7E-10 57.1 4.5 76 13-93 163-255 (369)
215 3h2y_A GTPase family protein; 98.0 4.1E-06 1.4E-10 57.6 3.9 23 13-35 161-183 (368)
216 3sop_A Neuronal-specific septi 98.0 4.8E-06 1.6E-10 55.0 3.2 25 12-36 2-26 (270)
217 2qag_B Septin-6, protein NEDD5 97.9 2.8E-05 9.7E-10 54.4 6.8 59 12-70 42-105 (427)
218 2j37_W Signal recognition part 97.9 3.3E-05 1.1E-09 55.2 6.3 23 11-33 100-122 (504)
219 1ye8_A Protein THEP1, hypothet 97.8 1.2E-05 4.1E-10 49.9 3.4 22 14-35 2-23 (178)
220 1kgd_A CASK, peripheral plasma 97.8 1.2E-05 4.2E-10 49.7 3.2 22 14-35 7-28 (180)
221 1lvg_A Guanylate kinase, GMP k 97.8 1.6E-05 5.5E-10 50.0 3.2 21 14-34 6-26 (198)
222 1ex7_A Guanylate kinase; subst 97.7 2.1E-05 7.3E-10 49.2 3.2 21 15-35 4-24 (186)
223 3ney_A 55 kDa erythrocyte memb 97.7 3.2E-05 1.1E-09 48.8 3.8 27 9-35 16-42 (197)
224 3a00_A Guanylate kinase, GMP k 97.7 2.4E-05 8.3E-10 48.5 3.1 20 15-34 4-23 (186)
225 3tr0_A Guanylate kinase, GMP k 97.7 2.7E-05 9.1E-10 48.7 3.2 22 14-35 9-30 (205)
226 1zp6_A Hypothetical protein AT 97.7 2.5E-05 8.4E-10 48.4 2.8 22 14-35 11-32 (191)
227 1s96_A Guanylate kinase, GMP k 97.7 2.9E-05 9.9E-10 49.7 3.2 22 14-35 18-39 (219)
228 3tau_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 48.8 3.2 22 14-35 10-31 (208)
229 1znw_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 48.6 3.2 22 14-35 22-43 (207)
230 3q5d_A Atlastin-1; G protein, 97.6 0.00077 2.6E-08 47.5 10.1 98 11-108 66-196 (447)
231 1z6g_A Guanylate kinase; struc 97.6 3.7E-05 1.3E-09 49.0 3.2 22 14-35 25-46 (218)
232 4gp7_A Metallophosphoesterase; 97.6 2.9E-05 1E-09 47.6 2.6 18 14-31 11-28 (171)
233 3kb2_A SPBC2 prophage-derived 97.6 4.3E-05 1.5E-09 46.3 3.1 21 14-34 3-23 (173)
234 2qor_A Guanylate kinase; phosp 97.6 4.4E-05 1.5E-09 48.0 3.2 22 13-34 13-34 (204)
235 1tq4_A IIGP1, interferon-induc 97.6 8.6E-05 2.9E-09 51.9 4.8 23 13-35 70-92 (413)
236 3c8u_A Fructokinase; YP_612366 97.6 4.9E-05 1.7E-09 48.0 3.0 24 11-34 21-44 (208)
237 3lw7_A Adenylate kinase relate 97.6 5.1E-05 1.7E-09 45.9 3.0 20 13-32 2-21 (179)
238 1kag_A SKI, shikimate kinase I 97.6 5.5E-05 1.9E-09 46.0 3.2 22 13-34 5-26 (173)
239 1htw_A HI0065; nucleotide-bind 97.6 5.6E-05 1.9E-09 46.1 3.2 23 14-36 35-57 (158)
240 1ly1_A Polynucleotide kinase; 97.6 5.6E-05 1.9E-09 46.1 3.2 22 13-34 3-24 (181)
241 2j41_A Guanylate kinase; GMP, 97.5 6E-05 2E-09 47.1 3.1 24 13-36 7-30 (207)
242 3fb4_A Adenylate kinase; psych 97.5 6.6E-05 2.2E-09 47.4 3.3 21 13-33 1-21 (216)
243 3vaa_A Shikimate kinase, SK; s 97.5 6.9E-05 2.4E-09 46.9 3.4 21 14-34 27-47 (199)
244 2bdt_A BH3686; alpha-beta prot 97.5 6.3E-05 2.2E-09 46.6 3.2 21 14-34 4-24 (189)
245 3dl0_A Adenylate kinase; phosp 97.5 6.7E-05 2.3E-09 47.4 3.3 22 13-34 1-22 (216)
246 1qhx_A CPT, protein (chloramph 97.5 6.6E-05 2.3E-09 45.9 3.2 22 13-34 4-25 (178)
247 4eun_A Thermoresistant glucoki 97.5 7E-05 2.4E-09 46.9 3.2 22 13-34 30-51 (200)
248 2bbw_A Adenylate kinase 4, AK4 97.5 7.4E-05 2.5E-09 48.3 3.3 21 13-33 28-48 (246)
249 3t61_A Gluconokinase; PSI-biol 97.5 7.3E-05 2.5E-09 46.8 3.1 22 13-34 19-40 (202)
250 2jaq_A Deoxyguanosine kinase; 97.5 8.7E-05 3E-09 46.2 3.4 21 14-34 2-22 (205)
251 1kht_A Adenylate kinase; phosp 97.5 9E-05 3.1E-09 45.6 3.4 22 13-34 4-25 (192)
252 3sr0_A Adenylate kinase; phosp 97.5 8.7E-05 3E-09 47.1 3.3 22 13-34 1-22 (206)
253 3tif_A Uncharacterized ABC tra 97.5 7E-05 2.4E-09 48.4 2.9 22 14-35 33-54 (235)
254 1t9h_A YLOQ, probable GTPase E 97.5 4.8E-05 1.6E-09 51.2 2.2 22 14-35 175-196 (307)
255 2i3b_A HCR-ntpase, human cance 97.5 8.6E-05 2.9E-09 46.5 3.2 21 14-34 3-23 (189)
256 2cdn_A Adenylate kinase; phosp 97.5 0.00012 4.1E-09 45.7 3.9 27 8-34 16-42 (201)
257 3ec2_A DNA replication protein 97.5 6.7E-05 2.3E-09 46.1 2.7 23 13-35 39-61 (180)
258 3trf_A Shikimate kinase, SK; a 97.4 9.9E-05 3.4E-09 45.4 3.3 22 13-34 6-27 (185)
259 1nks_A Adenylate kinase; therm 97.4 8.4E-05 2.9E-09 45.8 3.0 21 14-34 3-23 (194)
260 1knq_A Gluconate kinase; ALFA/ 97.4 0.00015 5.2E-09 44.2 4.1 22 13-34 9-30 (175)
261 1ak2_A Adenylate kinase isoenz 97.4 0.00013 4.3E-09 46.8 3.6 25 10-34 14-38 (233)
262 3uie_A Adenylyl-sulfate kinase 97.4 0.0001 3.6E-09 46.1 3.2 22 13-34 26-47 (200)
263 2onk_A Molybdate/tungstate ABC 97.4 0.0001 3.6E-09 47.8 3.2 22 14-35 26-47 (240)
264 1tev_A UMP-CMP kinase; ploop, 97.4 0.00013 4.5E-09 44.9 3.5 22 12-33 3-24 (196)
265 2pcj_A ABC transporter, lipopr 97.4 8.5E-05 2.9E-09 47.7 2.6 22 14-35 32-53 (224)
266 1via_A Shikimate kinase; struc 97.4 0.00012 4.1E-09 44.8 3.2 20 14-33 6-25 (175)
267 1b0u_A Histidine permease; ABC 97.4 0.0001 3.5E-09 48.4 3.0 22 14-35 34-55 (262)
268 2if2_A Dephospho-COA kinase; a 97.4 0.00011 3.7E-09 46.0 3.0 22 13-34 2-23 (204)
269 1jbk_A CLPB protein; beta barr 97.4 0.00012 4.2E-09 44.6 3.2 23 13-35 44-66 (195)
270 2ehv_A Hypothetical protein PH 97.4 0.00012 4E-09 47.0 3.2 20 14-33 32-51 (251)
271 2rcn_A Probable GTPase ENGC; Y 97.4 0.00011 3.7E-09 50.4 3.1 24 14-37 217-240 (358)
272 2plr_A DTMP kinase, probable t 97.4 0.00016 5.5E-09 45.2 3.7 23 12-34 4-26 (213)
273 1cke_A CK, MSSA, protein (cyti 97.4 0.00013 4.5E-09 46.2 3.4 22 13-34 6-27 (227)
274 3asz_A Uridine kinase; cytidin 97.4 0.00011 3.7E-09 46.2 2.9 22 13-34 7-28 (211)
275 3gfo_A Cobalt import ATP-bindi 97.4 0.00011 3.8E-09 48.6 3.0 22 14-35 36-57 (275)
276 1ukz_A Uridylate kinase; trans 97.4 0.00023 8E-09 44.4 4.4 23 11-33 14-36 (203)
277 1sgw_A Putative ABC transporte 97.4 0.00012 4.1E-09 46.8 3.0 22 14-35 37-58 (214)
278 2cbz_A Multidrug resistance-as 97.4 0.00012 4.2E-09 47.3 3.1 22 14-35 33-54 (237)
279 3cm0_A Adenylate kinase; ATP-b 97.4 0.00018 6.2E-09 44.2 3.8 22 12-33 4-25 (186)
280 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.8E-09 45.3 2.8 22 13-34 6-27 (193)
281 1e4v_A Adenylate kinase; trans 97.4 0.00012 4.1E-09 46.3 3.0 22 13-34 1-22 (214)
282 2ff7_A Alpha-hemolysin translo 97.3 0.00013 4.4E-09 47.5 3.1 22 14-35 37-58 (247)
283 1mv5_A LMRA, multidrug resista 97.3 0.00013 4.6E-09 47.3 3.2 22 14-35 30-51 (243)
284 1g6h_A High-affinity branched- 97.3 0.00012 4.1E-09 47.9 2.9 22 14-35 35-56 (257)
285 4g1u_C Hemin import ATP-bindin 97.3 0.00012 4.2E-09 48.1 2.9 22 14-35 39-60 (266)
286 1jjv_A Dephospho-COA kinase; P 97.3 0.00017 5.9E-09 45.1 3.5 22 13-34 3-24 (206)
287 1np6_A Molybdopterin-guanine d 97.3 0.00016 5.4E-09 44.8 3.2 22 13-34 7-28 (174)
288 1y63_A LMAJ004144AAA protein; 97.3 0.00021 7.3E-09 44.1 3.8 24 12-35 10-33 (184)
289 2olj_A Amino acid ABC transpor 97.3 0.00013 4.6E-09 47.9 3.0 22 14-35 52-73 (263)
290 2pze_A Cystic fibrosis transme 97.3 0.00014 4.7E-09 46.8 3.0 22 14-35 36-57 (229)
291 3iij_A Coilin-interacting nucl 97.3 0.00021 7.2E-09 43.8 3.8 23 11-33 10-32 (180)
292 3lnc_A Guanylate kinase, GMP k 97.3 7.9E-05 2.7E-09 47.7 1.9 20 14-33 29-48 (231)
293 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00015 5E-09 47.3 3.2 22 14-35 31-52 (250)
294 3b85_A Phosphate starvation-in 97.3 0.00011 3.9E-09 46.6 2.6 22 14-35 24-45 (208)
295 1ji0_A ABC transporter; ATP bi 97.3 0.00014 4.6E-09 47.2 2.9 22 14-35 34-55 (240)
296 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 45.7 3.4 22 13-34 5-26 (220)
297 3tlx_A Adenylate kinase 2; str 97.3 0.00018 6.2E-09 46.5 3.5 24 11-34 28-51 (243)
298 4a74_A DNA repair and recombin 97.3 0.00013 4.5E-09 46.2 2.8 22 14-35 27-48 (231)
299 2v9p_A Replication protein E1; 97.3 0.00016 5.4E-09 48.6 3.3 21 14-34 128-148 (305)
300 2zu0_C Probable ATP-dependent 97.3 0.00016 5.4E-09 47.6 3.2 22 14-35 48-69 (267)
301 2qi9_C Vitamin B12 import ATP- 97.3 0.00015 5E-09 47.4 3.0 22 14-35 28-49 (249)
302 1lw7_A Transcriptional regulat 97.3 0.00014 4.8E-09 49.7 3.0 23 12-34 170-192 (365)
303 3aez_A Pantothenate kinase; tr 97.3 0.00016 5.4E-09 48.7 3.2 24 11-34 89-112 (312)
304 1vpl_A ABC transporter, ATP-bi 97.3 0.00015 5.1E-09 47.5 3.0 22 14-35 43-64 (256)
305 2ixe_A Antigen peptide transpo 97.3 0.00015 5.1E-09 47.9 2.9 22 14-35 47-68 (271)
306 2ghi_A Transport protein; mult 97.3 0.00016 5.6E-09 47.4 3.1 22 14-35 48-69 (260)
307 2eyu_A Twitching motility prot 97.3 0.00016 5.6E-09 47.4 3.1 21 14-34 27-47 (261)
308 2pt5_A Shikimate kinase, SK; a 97.3 0.00021 7.1E-09 43.2 3.4 21 14-34 2-22 (168)
309 2ihy_A ABC transporter, ATP-bi 97.3 0.00017 5.9E-09 47.8 3.2 22 14-35 49-70 (279)
310 1qf9_A UMP/CMP kinase, protein 97.3 0.00027 9.1E-09 43.5 3.9 22 13-34 7-28 (194)
311 1ixz_A ATP-dependent metallopr 97.3 0.00019 6.6E-09 46.4 3.2 21 15-35 52-72 (254)
312 2xb4_A Adenylate kinase; ATP-b 97.3 0.00022 7.4E-09 45.5 3.4 21 14-34 2-22 (223)
313 2yv5_A YJEQ protein; hydrolase 97.3 0.00071 2.4E-08 45.2 5.9 64 43-111 44-108 (302)
314 2yz2_A Putative ABC transporte 97.3 0.00018 6E-09 47.3 2.9 22 14-35 35-56 (266)
315 2nq2_C Hypothetical ABC transp 97.3 0.00018 6.1E-09 47.0 2.9 22 14-35 33-54 (253)
316 2yv5_A YJEQ protein; hydrolase 97.2 0.00019 6.5E-09 48.0 3.1 20 14-33 167-186 (302)
317 2ze6_A Isopentenyl transferase 97.2 0.0002 7E-09 46.6 3.2 21 14-34 3-23 (253)
318 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.6E-09 45.7 3.0 21 13-33 8-28 (227)
319 1gvn_B Zeta; postsegregational 97.2 0.00026 9E-09 47.0 3.8 24 11-34 32-55 (287)
320 1u0l_A Probable GTPase ENGC; p 97.2 0.00017 5.7E-09 48.2 2.8 23 14-36 171-193 (301)
321 1zak_A Adenylate kinase; ATP:A 97.2 0.00018 6.1E-09 45.7 2.8 21 13-33 6-26 (222)
322 2x8a_A Nuclear valosin-contain 97.2 0.00021 7.1E-09 47.2 3.2 20 15-34 47-66 (274)
323 2kjq_A DNAA-related protein; s 97.2 0.00015 5.1E-09 43.6 2.3 22 14-35 38-59 (149)
324 2p65_A Hypothetical protein PF 97.2 0.00017 6E-09 43.8 2.6 23 13-35 44-66 (187)
325 2wwf_A Thymidilate kinase, put 97.2 0.00032 1.1E-08 43.9 3.9 23 12-34 10-32 (212)
326 2v54_A DTMP kinase, thymidylat 97.2 0.00025 8.6E-09 44.1 3.4 23 13-35 5-27 (204)
327 2yvu_A Probable adenylyl-sulfa 97.2 0.00039 1.3E-08 42.8 4.2 25 10-34 11-35 (186)
328 2pjz_A Hypothetical protein ST 97.2 0.00022 7.5E-09 46.9 3.2 23 14-36 32-54 (263)
329 2f1r_A Molybdopterin-guanine d 97.2 0.0001 3.5E-09 45.5 1.4 21 14-34 4-24 (171)
330 2z0h_A DTMP kinase, thymidylat 97.2 0.00025 8.7E-09 43.8 3.2 21 14-34 2-22 (197)
331 2jeo_A Uridine-cytidine kinase 97.2 0.00025 8.4E-09 45.8 3.2 22 13-34 26-47 (245)
332 2qt1_A Nicotinamide riboside k 97.2 0.00035 1.2E-08 43.8 3.7 24 12-35 21-44 (207)
333 3umf_A Adenylate kinase; rossm 97.2 0.00027 9.1E-09 45.3 3.2 26 9-34 25-51 (217)
334 2pbr_A DTMP kinase, thymidylat 97.2 0.0003 1E-08 43.3 3.3 21 14-34 2-22 (195)
335 2iyv_A Shikimate kinase, SK; t 97.2 0.00027 9.2E-09 43.4 3.1 21 14-34 4-24 (184)
336 2c95_A Adenylate kinase 1; tra 97.2 0.00023 8E-09 44.0 2.8 21 13-33 10-30 (196)
337 1e6c_A Shikimate kinase; phosp 97.2 0.00029 1E-08 42.7 3.2 21 14-34 4-24 (173)
338 3bos_A Putative DNA replicatio 97.2 0.00027 9.1E-09 44.8 3.2 23 12-34 52-74 (242)
339 1in4_A RUVB, holliday junction 97.2 0.00026 9E-09 47.8 3.2 22 14-35 53-74 (334)
340 1odf_A YGR205W, hypothetical 3 97.2 0.00044 1.5E-08 46.1 4.2 24 10-33 29-52 (290)
341 3be4_A Adenylate kinase; malar 97.2 0.00025 8.4E-09 45.0 2.8 22 13-34 6-27 (217)
342 3l82_B F-box only protein 4; T 97.2 0.00019 6.6E-09 45.9 2.3 33 68-100 110-142 (227)
343 1iy2_A ATP-dependent metallopr 97.2 0.00029 9.8E-09 46.3 3.2 21 15-35 76-96 (278)
344 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00029 1E-08 44.5 3.2 21 14-34 25-45 (235)
345 1uf9_A TT1252 protein; P-loop, 97.2 0.00033 1.1E-08 43.5 3.4 25 11-35 7-31 (203)
346 2bwj_A Adenylate kinase 5; pho 97.1 0.00028 9.6E-09 43.7 3.0 22 13-34 13-34 (199)
347 1rj9_A FTSY, signal recognitio 97.1 0.00028 9.6E-09 47.3 3.2 21 13-33 103-123 (304)
348 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0003 1E-08 45.9 3.2 22 13-34 5-26 (260)
349 3nh6_A ATP-binding cassette SU 97.1 0.00019 6.6E-09 48.2 2.3 21 14-34 82-102 (306)
350 1gtv_A TMK, thymidylate kinase 97.1 9.8E-05 3.3E-09 46.4 0.8 21 14-34 2-22 (214)
351 1lv7_A FTSH; alpha/beta domain 97.1 0.00031 1E-08 45.5 3.2 22 13-34 46-67 (257)
352 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00024 8.3E-09 48.7 2.8 21 15-35 33-53 (359)
353 1z47_A CYSA, putative ABC-tran 97.1 0.0003 1E-08 48.2 3.2 22 14-35 43-64 (355)
354 1xjc_A MOBB protein homolog; s 97.1 0.00036 1.2E-08 43.0 3.2 22 13-34 5-26 (169)
355 2it1_A 362AA long hypothetical 97.1 0.00031 1.1E-08 48.2 3.2 22 14-35 31-52 (362)
356 2w58_A DNAI, primosome compone 97.1 0.00034 1.2E-08 43.6 3.2 23 13-35 55-77 (202)
357 2yyz_A Sugar ABC transporter, 97.1 0.00031 1.1E-08 48.2 3.2 22 14-35 31-52 (359)
358 3b9q_A Chloroplast SRP recepto 97.1 0.00033 1.1E-08 46.9 3.2 22 13-34 101-122 (302)
359 2p5t_B PEZT; postsegregational 97.1 0.00041 1.4E-08 45.1 3.6 25 10-34 30-54 (253)
360 2vli_A Antibiotic resistance p 97.1 0.00024 8.3E-09 43.5 2.4 22 13-34 6-27 (183)
361 2bbs_A Cystic fibrosis transme 97.1 0.00027 9.2E-09 47.1 2.7 22 14-35 66-87 (290)
362 3rlf_A Maltose/maltodextrin im 97.1 0.00033 1.1E-08 48.5 3.2 21 15-35 32-52 (381)
363 1g29_1 MALK, maltose transport 97.1 0.00034 1.2E-08 48.2 3.2 22 14-35 31-52 (372)
364 4e22_A Cytidylate kinase; P-lo 97.1 0.00039 1.3E-08 45.2 3.3 21 13-33 28-48 (252)
365 1v43_A Sugar-binding transport 97.1 0.00035 1.2E-08 48.2 3.2 22 14-35 39-60 (372)
366 3e70_C DPA, signal recognition 97.1 0.00036 1.2E-08 47.3 3.2 23 12-34 129-151 (328)
367 3tui_C Methionine import ATP-b 97.1 0.00036 1.2E-08 48.0 3.2 21 15-35 57-77 (366)
368 1nn5_A Similar to deoxythymidy 97.1 0.00032 1.1E-08 44.0 2.8 23 12-34 9-31 (215)
369 2chg_A Replication factor C sm 97.1 0.0004 1.4E-08 43.2 3.2 21 14-34 40-60 (226)
370 1njg_A DNA polymerase III subu 97.1 0.00039 1.3E-08 43.8 3.1 21 14-34 47-67 (250)
371 3tqc_A Pantothenate kinase; bi 97.1 0.00057 1.9E-08 46.2 4.0 24 10-33 90-113 (321)
372 1rz3_A Hypothetical protein rb 97.1 0.00036 1.2E-08 43.7 2.8 23 12-34 22-44 (201)
373 2pez_A Bifunctional 3'-phospho 97.1 0.00044 1.5E-08 42.3 3.2 22 13-34 6-27 (179)
374 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00046 1.6E-08 47.4 3.5 24 10-33 31-54 (362)
375 3d31_A Sulfate/molybdate ABC t 97.0 0.00028 9.6E-09 48.2 2.4 22 14-35 28-49 (348)
376 1uj2_A Uridine-cytidine kinase 97.0 0.00051 1.8E-08 44.5 3.6 24 11-34 21-44 (252)
377 3jvv_A Twitching mobility prot 97.0 0.00041 1.4E-08 47.5 3.1 21 14-34 125-145 (356)
378 1sq5_A Pantothenate kinase; P- 97.0 0.00036 1.2E-08 46.7 2.8 23 12-34 80-102 (308)
379 1zuh_A Shikimate kinase; alpha 97.0 0.00054 1.8E-08 41.5 3.4 22 13-34 8-29 (168)
380 3nwj_A ATSK2; P loop, shikimat 97.0 0.00044 1.5E-08 45.1 3.1 22 13-34 49-70 (250)
381 2cvh_A DNA repair and recombin 97.0 0.00047 1.6E-08 43.3 3.2 21 14-34 22-42 (220)
382 1n0w_A DNA repair protein RAD5 97.0 0.00047 1.6E-08 43.9 3.2 22 14-35 26-47 (243)
383 3n70_A Transport activator; si 97.0 0.00088 3E-08 39.8 4.2 24 12-35 24-47 (145)
384 1m7g_A Adenylylsulfate kinase; 97.0 0.00049 1.7E-08 43.4 3.2 22 13-34 26-47 (211)
385 3h4m_A Proteasome-activating n 97.0 0.00046 1.6E-08 45.2 3.1 23 13-35 52-74 (285)
386 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00051 1.7E-08 44.3 3.2 22 13-34 40-61 (262)
387 3kta_A Chromosome segregation 97.0 0.00044 1.5E-08 42.4 2.8 21 14-34 28-48 (182)
388 4eaq_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 44.1 3.2 23 12-34 26-48 (229)
389 2vp4_A Deoxynucleoside kinase; 97.0 0.0006 2.1E-08 43.6 3.4 24 12-35 20-43 (230)
390 3b9p_A CG5977-PA, isoform A; A 97.0 0.0005 1.7E-08 45.4 3.1 23 12-34 54-76 (297)
391 1cr0_A DNA primase/helicase; R 97.0 0.00044 1.5E-08 45.8 2.8 21 14-34 37-57 (296)
392 1ltq_A Polynucleotide kinase; 97.0 0.00054 1.9E-08 45.3 3.2 22 13-34 3-24 (301)
393 2ewv_A Twitching motility prot 97.0 0.0005 1.7E-08 47.3 3.1 21 14-34 138-158 (372)
394 2gza_A Type IV secretion syste 97.0 0.00044 1.5E-08 47.4 2.7 22 14-35 177-198 (361)
395 1vht_A Dephospho-COA kinase; s 97.0 0.00064 2.2E-08 42.9 3.3 22 13-34 5-26 (218)
396 2og2_A Putative signal recogni 96.9 0.00055 1.9E-08 47.0 3.2 22 13-34 158-179 (359)
397 1oxx_K GLCV, glucose, ABC tran 96.9 0.00028 9.7E-09 48.3 1.7 22 14-35 33-54 (353)
398 3gd7_A Fusion complex of cysti 96.9 0.00048 1.6E-08 47.8 2.8 21 14-34 49-69 (390)
399 2obl_A ESCN; ATPase, hydrolase 96.9 0.00054 1.9E-08 46.8 3.0 23 14-36 73-95 (347)
400 3t15_A Ribulose bisphosphate c 96.9 0.00052 1.8E-08 45.6 2.8 22 13-34 37-58 (293)
401 1l8q_A Chromosomal replication 96.9 0.00059 2E-08 45.7 3.1 22 13-34 38-59 (324)
402 3r20_A Cytidylate kinase; stru 96.9 0.00067 2.3E-08 43.9 3.2 22 12-33 9-30 (233)
403 2yhs_A FTSY, cell division pro 96.9 0.0006 2E-08 48.7 3.2 22 13-34 294-315 (503)
404 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0005 1.7E-08 46.6 2.7 22 14-35 173-194 (330)
405 2xtz_A Guanine nucleotide-bind 96.9 0.00088 3E-08 45.9 3.9 26 8-33 5-30 (354)
406 1ofh_A ATP-dependent HSL prote 96.9 0.00067 2.3E-08 44.7 3.2 22 13-34 51-72 (310)
407 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00053 1.8E-08 48.5 2.8 21 14-34 140-160 (460)
408 3syl_A Protein CBBX; photosynt 96.9 0.00085 2.9E-08 44.4 3.6 22 12-33 67-88 (309)
409 3cf0_A Transitional endoplasmi 96.9 0.00068 2.3E-08 45.1 3.1 23 13-35 50-72 (301)
410 3szr_A Interferon-induced GTP- 96.9 0.00041 1.4E-08 50.6 2.1 24 14-37 47-70 (608)
411 2f6r_A COA synthase, bifunctio 96.9 0.0008 2.8E-08 44.5 3.3 23 11-33 74-96 (281)
412 1d2n_A N-ethylmaleimide-sensit 96.8 0.00077 2.6E-08 44.0 3.2 25 11-35 63-87 (272)
413 2qby_A CDC6 homolog 1, cell di 96.8 0.00064 2.2E-08 46.0 2.8 22 13-34 46-67 (386)
414 2grj_A Dephospho-COA kinase; T 96.8 0.0012 4E-08 41.4 3.8 26 9-34 9-34 (192)
415 1p9r_A General secretion pathw 96.8 0.00076 2.6E-08 47.2 3.1 22 14-35 169-190 (418)
416 1fnn_A CDC6P, cell division co 96.8 0.00087 3E-08 45.5 3.2 22 14-35 46-67 (389)
417 1tue_A Replication protein E1; 96.8 0.00074 2.5E-08 43.0 2.6 22 13-34 59-80 (212)
418 2dr3_A UPF0273 protein PH0284; 96.8 0.0008 2.7E-08 42.9 2.8 21 14-34 25-45 (247)
419 2dpy_A FLII, flagellum-specifi 96.8 0.0008 2.7E-08 47.3 3.0 22 14-35 159-180 (438)
420 3zvl_A Bifunctional polynucleo 96.8 0.00087 3E-08 46.7 3.1 23 12-34 258-280 (416)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00096 3.3E-08 40.0 2.9 19 15-33 26-44 (149)
422 4fcw_A Chaperone protein CLPB; 96.8 0.0016 5.3E-08 43.1 4.2 22 13-34 48-69 (311)
423 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.00099 3.4E-08 44.8 3.1 23 13-35 46-68 (322)
424 2qen_A Walker-type ATPase; unk 96.7 0.001 3.6E-08 44.4 3.2 22 14-35 33-54 (350)
425 3eie_A Vacuolar protein sortin 96.7 0.0011 3.7E-08 44.5 3.3 24 12-35 51-74 (322)
426 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.5E-08 46.0 3.2 21 14-34 171-191 (377)
427 1nlf_A Regulatory protein REPA 96.7 0.00089 3.1E-08 44.0 2.8 21 14-34 32-52 (279)
428 3pxg_A Negative regulator of g 96.7 0.00094 3.2E-08 47.2 3.0 24 12-35 201-224 (468)
429 1nij_A Hypothetical protein YJ 96.7 0.00068 2.3E-08 45.6 2.2 23 14-36 6-28 (318)
430 1q3t_A Cytidylate kinase; nucl 96.7 0.0014 4.7E-08 42.0 3.6 26 9-34 13-38 (236)
431 2qmh_A HPR kinase/phosphorylas 96.7 0.0011 3.9E-08 42.0 3.0 23 13-35 35-57 (205)
432 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.9E-08 44.8 3.2 22 13-34 6-27 (323)
433 1sxj_E Activator 1 40 kDa subu 96.7 0.00085 2.9E-08 45.2 2.6 20 15-34 39-58 (354)
434 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0011 3.9E-08 47.7 3.4 22 14-35 49-70 (538)
435 3l2o_B F-box only protein 4; s 96.7 0.00046 1.6E-08 46.3 1.2 34 67-100 194-227 (312)
436 1sxj_C Activator 1 40 kDa subu 96.7 0.0011 3.7E-08 44.7 3.1 21 15-35 49-69 (340)
437 3uk6_A RUVB-like 2; hexameric 96.7 0.00095 3.2E-08 45.2 2.8 23 13-35 71-93 (368)
438 3a8t_A Adenylate isopentenyltr 96.7 0.0012 4.2E-08 44.9 3.3 21 14-34 42-62 (339)
439 3euj_A Chromosome partition pr 96.7 0.0011 3.8E-08 47.2 3.2 21 14-34 31-51 (483)
440 2oap_1 GSPE-2, type II secreti 96.7 0.00094 3.2E-08 47.8 2.8 22 14-35 262-283 (511)
441 2v1u_A Cell division control p 96.7 0.00093 3.2E-08 45.2 2.7 23 13-35 45-67 (387)
442 1sxj_D Activator 1 41 kDa subu 96.7 0.0012 4E-08 44.4 3.2 21 15-35 61-81 (353)
443 3d3q_A TRNA delta(2)-isopenten 96.7 0.0012 4.1E-08 45.0 3.2 22 13-34 8-29 (340)
444 2qgz_A Helicase loader, putati 96.7 0.0013 4.6E-08 44.0 3.3 23 12-34 152-174 (308)
445 1a7j_A Phosphoribulokinase; tr 96.7 0.00073 2.5E-08 45.0 2.0 22 13-34 6-27 (290)
446 3gmt_A Adenylate kinase; ssgci 96.7 0.0015 5.1E-08 42.2 3.4 25 10-34 6-30 (230)
447 4b4t_M 26S protease regulatory 96.7 0.0013 4.6E-08 46.2 3.4 22 13-34 216-237 (434)
448 3pfi_A Holliday junction ATP-d 96.7 0.0012 4.3E-08 44.2 3.2 23 13-35 56-78 (338)
449 2fna_A Conserved hypothetical 96.7 0.0011 3.6E-08 44.4 2.8 22 14-35 32-53 (357)
450 3b60_A Lipid A export ATP-bind 96.7 0.001 3.4E-08 48.3 2.8 22 14-35 371-392 (582)
451 4b4t_K 26S protease regulatory 96.6 0.0013 4.3E-08 46.2 3.2 21 14-34 208-228 (428)
452 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.8E-08 40.8 3.2 21 14-34 4-24 (208)
453 1um8_A ATP-dependent CLP prote 96.6 0.0013 4.4E-08 44.9 3.2 23 12-34 72-94 (376)
454 1p5z_B DCK, deoxycytidine kina 96.6 0.00087 3E-08 43.6 2.2 23 12-34 24-46 (263)
455 2bjv_A PSP operon transcriptio 96.6 0.0014 4.7E-08 42.6 3.2 23 13-35 30-52 (265)
456 3b5x_A Lipid A export ATP-bind 96.6 0.0012 4.2E-08 47.8 3.2 22 14-35 371-392 (582)
457 2r62_A Cell division protease 96.6 0.00051 1.7E-08 44.7 1.1 21 14-34 46-66 (268)
458 3co5_A Putative two-component 96.6 0.00055 1.9E-08 40.6 1.1 23 13-35 28-50 (143)
459 2r44_A Uncharacterized protein 96.6 0.001 3.5E-08 44.6 2.5 21 14-34 48-68 (331)
460 4b4t_L 26S protease subunit RP 96.6 0.0016 5.5E-08 45.8 3.4 22 13-34 216-237 (437)
461 4ido_A Atlastin-1; GTPase, GTP 96.6 0.075 2.6E-06 37.7 11.7 97 11-107 66-195 (457)
462 2qby_B CDC6 homolog 3, cell di 96.6 0.0013 4.5E-08 44.6 2.8 22 14-35 47-68 (384)
463 2qp9_X Vacuolar protein sortin 96.6 0.0015 5.2E-08 44.5 3.1 23 13-35 85-107 (355)
464 3ozx_A RNAse L inhibitor; ATP 96.6 0.0014 4.6E-08 47.3 3.0 22 14-35 27-48 (538)
465 3hws_A ATP-dependent CLP prote 96.6 0.0016 5.4E-08 44.4 3.2 24 11-34 50-73 (363)
466 2px0_A Flagellar biosynthesis 96.5 0.0014 4.8E-08 43.7 2.8 21 13-33 106-126 (296)
467 2z4s_A Chromosomal replication 96.5 0.0016 5.3E-08 45.8 3.1 22 13-34 131-152 (440)
468 2yl4_A ATP-binding cassette SU 96.5 0.0011 3.7E-08 48.2 2.4 22 14-35 372-393 (595)
469 3d8b_A Fidgetin-like protein 1 96.5 0.0017 5.7E-08 44.3 3.2 24 12-35 117-140 (357)
470 3foz_A TRNA delta(2)-isopenten 96.5 0.0018 6.1E-08 43.7 3.2 21 14-34 12-32 (316)
471 2h92_A Cytidylate kinase; ross 96.5 0.0019 6.5E-08 40.6 3.2 22 13-34 4-25 (219)
472 3m6a_A ATP-dependent protease 96.5 0.0016 5.4E-08 46.9 3.1 21 14-34 110-130 (543)
473 3j16_B RLI1P; ribosome recycli 96.5 0.0017 5.6E-08 47.5 3.2 22 14-35 105-126 (608)
474 1vma_A Cell division protein F 96.5 0.0018 6.2E-08 43.4 3.2 21 13-33 105-125 (306)
475 3exa_A TRNA delta(2)-isopenten 96.5 0.0025 8.5E-08 43.1 3.7 22 14-35 5-26 (322)
476 4b4t_J 26S protease regulatory 96.5 0.0019 6.4E-08 45.0 3.2 22 13-34 183-204 (405)
477 3qf4_B Uncharacterized ABC tra 96.5 0.0013 4.5E-08 47.8 2.5 21 14-34 383-403 (598)
478 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0021 7.2E-08 44.1 3.4 22 12-33 24-45 (359)
479 2r8r_A Sensor protein; KDPD, P 96.5 0.0024 8.1E-08 41.2 3.3 23 11-33 5-27 (228)
480 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0021 7.1E-08 46.3 3.4 22 14-35 314-335 (538)
481 3tqf_A HPR(Ser) kinase; transf 96.5 0.0023 7.7E-08 39.8 3.1 23 13-35 17-39 (181)
482 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.002 7E-08 44.1 3.2 19 15-33 26-44 (365)
483 3pvs_A Replication-associated 96.5 0.002 6.7E-08 45.4 3.2 22 14-35 52-73 (447)
484 1pzn_A RAD51, DNA repair and r 96.4 0.0017 6E-08 44.2 2.8 22 14-35 133-154 (349)
485 1hqc_A RUVB; extended AAA-ATPa 96.4 0.0013 4.4E-08 43.8 2.1 22 13-34 39-60 (324)
486 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.8E-08 44.5 1.8 21 14-34 47-67 (350)
487 3vfd_A Spastin; ATPase, microt 96.4 0.0021 7.2E-08 44.2 3.2 24 12-35 148-171 (389)
488 3bk7_A ABC transporter ATP-bin 96.4 0.002 6.9E-08 47.1 3.2 22 14-35 119-140 (607)
489 1c9k_A COBU, adenosylcobinamid 96.4 0.0021 7E-08 40.0 2.8 21 15-35 2-22 (180)
490 3ozx_A RNAse L inhibitor; ATP 96.4 0.0019 6.5E-08 46.5 3.0 22 14-35 296-317 (538)
491 2ce7_A Cell division protein F 96.4 0.0022 7.5E-08 45.6 3.2 21 14-34 51-71 (476)
492 4a82_A Cystic fibrosis transme 96.4 0.0011 3.9E-08 48.0 1.8 21 14-34 369-389 (578)
493 3bk7_A ABC transporter ATP-bin 96.4 0.0022 7.5E-08 46.9 3.2 22 14-35 384-405 (607)
494 1g41_A Heat shock protein HSLU 96.4 0.0023 7.9E-08 45.1 3.2 22 13-34 51-72 (444)
495 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0023 7.8E-08 45.8 3.2 22 13-34 42-63 (500)
496 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0022 7.5E-08 45.9 3.1 22 14-35 66-87 (499)
497 4edh_A DTMP kinase, thymidylat 96.4 0.0026 9E-08 40.4 3.2 24 10-33 4-27 (213)
498 2zan_A Vacuolar protein sortin 96.4 0.0023 8E-08 44.9 3.2 23 13-35 168-190 (444)
499 1iqp_A RFCS; clamp loader, ext 96.4 0.0026 8.9E-08 42.1 3.2 22 14-35 48-69 (327)
500 2zts_A Putative uncharacterize 96.4 0.0027 9.1E-08 40.5 3.2 20 14-33 32-51 (251)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7e-32 Score=174.01 Aligned_cols=114 Identities=25% Similarity=0.474 Sum_probs=89.6
Q ss_pred CCCCC-CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 1 MAKAP-NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 1 m~~~~-~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
|++.. ...++.++||+++|++|||||||++||+.+.|...+.+|++ ++..+....++..+.++||||+|+++|..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 44444 23457789999999999999999999999999999999998 66677788899999999999999999999999
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhc
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~~ 114 (115)
.|+++++++++|||+++++||+++..|+..+.++.+
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~ 116 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988653
No 2
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=144.76 Aligned_cols=106 Identities=32% Similarity=0.560 Sum_probs=91.0
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
......+||+++|++|||||||+++++++.+...+.++.+..+.....+++..+.+++||++|+.++..+ ..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 3566789999999999999999999999999888899998777677788899999999999999988876 569999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++|+++..|+.++.++.
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~ 121 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHA 121 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 3
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=5.6e-26 Score=141.83 Aligned_cols=106 Identities=76% Similarity=1.198 Sum_probs=98.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
......+||+++|++|||||||++++.++.+...+.++.+..+......++..+.+++||++|+.++..++..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 45677899999999999999999999999998888898887777778889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||++++++|+.+..|+..+.+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~ 118 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRV 118 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999775
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=9.6e-27 Score=149.35 Aligned_cols=108 Identities=24% Similarity=0.415 Sum_probs=93.9
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
....+..+||+++|+++||||||++++.++.+...+.++.+..+...+.+++..+.+++||++|+.++..++..+++.+|
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 34566789999999999999999999999999988899999777777788888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHH-HHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYEN-IKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~-~~~~~~~i~~~~ 113 (115)
++|+|||+++++||++ +..|+..+.++.
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~ 129 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC 129 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999 799999998763
No 5
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.94 E-value=2.9e-26 Score=145.71 Aligned_cols=108 Identities=29% Similarity=0.514 Sum_probs=88.6
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
+......+||+++|+++||||||++++.++.+...+.++.+ +.....+.+++..+.+++||++|+.++..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 44566789999999999999999999999999887888877 45566777888889999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++|+|||++++++|+.+..|+..+.++.
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~ 131 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYA 131 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-26 Score=145.36 Aligned_cols=107 Identities=28% Similarity=0.536 Sum_probs=96.3
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
......+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|++++..+...+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3456689999999999999999999999999888888887 555667788899999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++++|+.+..|+.++.++.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~ 128 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYA 128 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 7
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=1.1e-25 Score=141.44 Aligned_cols=102 Identities=20% Similarity=0.374 Sum_probs=90.3
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
....+..+||+++|++|||||||+++++++.|...+.++ ...+...+.+++..+.+++|||+|+.++. +++.+|
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 346778999999999999999999999999998888777 44455778889999999999999999886 888999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++++|||+++++||+.+..|+.++.++.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFR 115 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998763
No 8
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=8.7e-26 Score=140.06 Aligned_cols=113 Identities=27% Similarity=0.487 Sum_probs=95.4
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHH
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQ 79 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 79 (115)
|+.......+..+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||+||+.++..+...
T Consensus 3 m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 82 (179)
T 2y8e_A 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 82 (179)
T ss_dssp ---------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHH
T ss_pred cccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHH
Confidence 3344444567789999999999999999999999999888888877 555677788898899999999999999999999
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++.+|++|+|||++++.+++.+..|+..+.+..
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 116 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988753
No 9
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.94 E-value=8.9e-26 Score=138.64 Aligned_cols=104 Identities=58% Similarity=1.014 Sum_probs=95.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+.++..++..+++.+|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999998888888887777777788889999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++++.+..|+..+.+..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~ 104 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVK 104 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988753
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=141.87 Aligned_cols=107 Identities=48% Similarity=0.843 Sum_probs=97.6
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
...+..+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+.++..++..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 35667899999999999999999999999998888888887777777888999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++|||++++++|+.+..|+..+.++.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 115 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVK 115 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 11
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=1.3e-25 Score=139.63 Aligned_cols=98 Identities=21% Similarity=0.421 Sum_probs=87.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
.+..+||+++|++|||||||++++.++.+.. +.++.++.+...+.+++..+.+++||++|+.+ ..+++++|++|
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 3568999999999999999999999999976 77888877777788899999999999999887 46889999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|||+++++||+.+..|++.+.+.
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~ 101 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSL 101 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777665
No 12
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.94 E-value=5e-26 Score=142.57 Aligned_cols=104 Identities=25% Similarity=0.449 Sum_probs=94.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
+...+||+++|++|||||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|+.++..++..+++.+|++|
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45689999999999999999999999999888888888767667778888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
+|||++++++|+++ ..|+..+.++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~ 108 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF 108 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 7899998775
No 13
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.94 E-value=3.2e-25 Score=136.02 Aligned_cols=104 Identities=48% Similarity=0.850 Sum_probs=93.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||+||+.++..++..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 45799999999999999999999999998888888887777777888999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++++.+..|+..+.+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~ 105 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVK 105 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=1.4e-25 Score=141.26 Aligned_cols=109 Identities=29% Similarity=0.485 Sum_probs=93.7
Q ss_pred CCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhh
Q psy9154 4 APNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMR 82 (115)
Q Consensus 4 ~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~ 82 (115)
.+.......+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+++||++|+.++..++..+++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 3455677899999999999999999999999999877777777 444566778888999999999999999999999999
Q ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 83 KGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.+|++|+|||++++++++.+..|+..+.++
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~ 122 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQH 122 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=3.9e-25 Score=136.00 Aligned_cols=103 Identities=32% Similarity=0.580 Sum_probs=93.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|++|||||||++++.++.+...+.++.+. .......+++..+.+.+||+||+.++..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4789999999999999999999999998878888774 445667788889999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++++.+..|+..+.+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~ 105 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA 105 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS
T ss_pred EEecCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998753
No 16
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.94 E-value=4.4e-25 Score=135.28 Aligned_cols=104 Identities=53% Similarity=0.948 Sum_probs=95.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||+.++..++..+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999998888888887777778889999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++++.+..|+..+.+..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~ 104 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVK 104 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=1.1e-25 Score=141.99 Aligned_cols=105 Identities=32% Similarity=0.532 Sum_probs=96.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+++||++|++++..++..+++.+|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 45668999999999999999999999999988888999877777788899999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
|+|||++++++|+.+ ..|+..+.+.
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~ 124 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY 124 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 7899988765
No 18
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=4e-25 Score=137.29 Aligned_cols=105 Identities=64% Similarity=0.999 Sum_probs=96.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+.++..++..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45668999999999999999999999999988888888877767778889899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|||++++++++.+..|+.++.+.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRV 109 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998654
No 19
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=145.46 Aligned_cols=106 Identities=29% Similarity=0.583 Sum_probs=75.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++..+.+...+.+++..+.+.+||++|+.++..++..+++.+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 44568999999999999999999999999988888888877777788899999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
|+|||++++++|+.+. .|+..+.+..
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~ 136 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC 136 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999996 7999988753
No 20
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.94 E-value=7.4e-26 Score=144.49 Aligned_cols=106 Identities=25% Similarity=0.444 Sum_probs=94.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+...+.+++..+.+++||++|+.+|..++..+++.+|++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 34568999999999999999999999999988888888876666677788899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHH-HHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENI-KHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~-~~~~~~i~~~~ 113 (115)
|+|||++++++|+++ ..|+..+.++.
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~ 130 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC 130 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999 79999988753
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.94 E-value=4.9e-25 Score=137.12 Aligned_cols=107 Identities=31% Similarity=0.521 Sum_probs=94.7
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
..+...+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||+.++..++..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3567789999999999999999999999999887777777 444666778888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++.+|+.+..|+..+.+..
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQG 114 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998763
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=5.2e-25 Score=135.42 Aligned_cols=105 Identities=29% Similarity=0.537 Sum_probs=94.3
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
+...+||+++|++|||||||++++.++.+...+.++.+. ........++..+.+.+||+||+.++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 356899999999999999999999999998877788774 4456677788899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||++++++++.+..|+..+.+..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA 108 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988763
No 23
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.94 E-value=3.5e-25 Score=139.15 Aligned_cols=105 Identities=27% Similarity=0.483 Sum_probs=93.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh-hhHHHHhhcCC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS-AMREQYMRKGD 85 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~-~~~~~~~~~~~ 85 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+.++. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 456689999999999999999999999999887778877 5556677788888999999999999998 89999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|+|||++++++|+.+..|+.++.++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~ 122 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQH 122 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999876
No 24
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=6.1e-25 Score=137.08 Aligned_cols=107 Identities=48% Similarity=0.843 Sum_probs=96.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
...+..+||+++|++|||||||++++.+..+...+.++....+...+..++..+.+.+||++|+.++..++..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 34567899999999999999999999999998888888887777777888998999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+.++.+..
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 119 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVK 119 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 25
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=9.9e-26 Score=139.93 Aligned_cols=104 Identities=35% Similarity=0.612 Sum_probs=93.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCC-eEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDD-VMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++ ..+.+++||++|+..+..++..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999999988776777776 55666677766 67899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||++++++++.+..|+.++.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~ 108 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKV 108 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=4.9e-25 Score=138.74 Aligned_cols=106 Identities=36% Similarity=0.627 Sum_probs=96.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++.++.+...+.++.+ +.....+..++..+.+.+||++|+..+..++..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 445689999999999999999999999999888888877 5556677888999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++|+.+..|+..+.++.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 118 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYA 118 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
No 27
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.6e-25 Score=139.36 Aligned_cols=107 Identities=25% Similarity=0.463 Sum_probs=95.4
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
.......+||+++|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||++|+.++..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34566789999999999999999999999999888888877 44456677788899999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++|+|||++++.+++.+..|+..+.+.
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~ 126 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDH 126 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
No 28
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=140.08 Aligned_cols=107 Identities=24% Similarity=0.508 Sum_probs=89.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
+.....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 4566789999999999999999999999998877778877 555667778888999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++.+++.+..|+..+.+..
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~ 128 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYA 128 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988753
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=4.1e-25 Score=138.12 Aligned_cols=106 Identities=31% Similarity=0.510 Sum_probs=95.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||+||+.++..++..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 456689999999999999999999999999888788777 4556667788888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+..+....
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 112 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLA 112 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987753
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.93 E-value=8.1e-25 Score=134.69 Aligned_cols=104 Identities=26% Similarity=0.505 Sum_probs=94.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcce-eEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIED-SYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.+..+...+.++.+. .........+....+.+||+||+.++..+...+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 356799999999999999999999999998888888884 4456677888889999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+|||++++.+++.+..|+..+.++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~ 107 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH 107 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 31
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=3e-25 Score=138.49 Aligned_cols=104 Identities=33% Similarity=0.546 Sum_probs=95.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
.+..+||+++|++|||||||++++.++.+...+.++.++.+...+..++..+.+++||+||+.++..++..+++.+|++|
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 35689999999999999999999999999888888888777777788999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
+|||++++.+++.+. .|+..+.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~ 106 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHH 106 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCChhhHHHHHHHHHHHHHHh
Confidence 999999999999997 799998875
No 32
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=1.3e-25 Score=143.40 Aligned_cols=103 Identities=37% Similarity=0.587 Sum_probs=93.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+...+.++.++.+...+.+++..+.+++||++|++++..++..+++.+|++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999999998888888887777777788889999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|||++++++|+++. .|+..+.++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~ 110 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRF 110 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 899998875
No 33
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.4e-25 Score=141.32 Aligned_cols=104 Identities=32% Similarity=0.553 Sum_probs=95.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|+++||||||++++.++.+...+.++.++.+...+.+++..+.+++||++|+.++..++..+++.+|++|
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 34679999999999999999999999999888888888777777778888899999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
+|||++++++|+.+. .|+..+.++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~ 119 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY 119 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999997 899998875
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.93 E-value=2.2e-25 Score=138.92 Aligned_cols=103 Identities=39% Similarity=0.640 Sum_probs=95.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+...+.++.+..+......++..+.+++||++|+.++..+...+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999998888999887777778889999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+.++.+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~ 106 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDM 106 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=9.2e-25 Score=135.42 Aligned_cols=106 Identities=34% Similarity=0.537 Sum_probs=95.4
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++.++.+...+.++.+ +.....+..++..+.+.+||++|+.++..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 455689999999999999999999999999887888877 4445667788889999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+..+.+..
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT 117 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988754
No 36
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.93 E-value=8.8e-25 Score=136.66 Aligned_cols=103 Identities=61% Similarity=1.032 Sum_probs=93.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|++|||||||++++.++.+...+.++..+.+......++..+.+++||+||+..+..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 57999999999999999999999999988888888877777888899999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||++++++|+.+..|+..+.++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~ 105 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVK 105 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998753
No 37
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=141.77 Aligned_cols=106 Identities=32% Similarity=0.483 Sum_probs=87.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.++.+...+..++..+.+++||++|+.++..++..++..+|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45678999999999999999999999999988888888877777778889999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIK-HFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~-~~~~~i~~~~ 113 (115)
|+|||++++++|+.+. .|+..+.++.
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~ 122 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC 122 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999997 7999988753
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5e-25 Score=138.91 Aligned_cols=108 Identities=30% Similarity=0.498 Sum_probs=94.3
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccee-EEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDS-YLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
.+.....+||+++|++|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||+.++..++..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 3456678999999999999999999999999887788888844 455567778889999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++|+|||++++++++.+..|+..+.++.
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~ 125 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHG 125 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998764
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.93 E-value=6.4e-25 Score=136.15 Aligned_cols=106 Identities=32% Similarity=0.567 Sum_probs=92.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||+||+.++..++..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 345689999999999999999999999999888888877 4446677788988999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++|||++++++++.+..|+.++.++.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 109 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYA 109 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998764
No 40
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.93 E-value=6.3e-25 Score=134.96 Aligned_cols=104 Identities=37% Similarity=0.593 Sum_probs=94.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||+||+.++..+...+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999999888888877 555667778888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||++++++++.+..|+..+.+..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~ 107 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV 107 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987753
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=4.7e-25 Score=139.73 Aligned_cols=105 Identities=34% Similarity=0.582 Sum_probs=86.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 455679999999999999999999999998877777777 4455667788999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||++++.+++.+..|+..+.+.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~ 129 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDA 129 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998775
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.93 E-value=3.3e-25 Score=136.57 Aligned_cols=105 Identities=27% Similarity=0.540 Sum_probs=87.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||+||+.++..++..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999999887778877 44456677788899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||++++++++.+..|+..+.+..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKML 108 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987753
No 43
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-25 Score=143.22 Aligned_cols=112 Identities=30% Similarity=0.501 Sum_probs=88.7
Q ss_pred CCCCCC-CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 1 MAKAPN-NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 1 m~~~~~-~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
|+..+. ......+||+++|+++||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|+.++..++.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 444442 2346689999999999999999999999999887777777 44456677888889999999999999999999
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.+++.+|++|+|||++++.+|+.+..|+.++.++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~ 114 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 44
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-24 Score=137.15 Aligned_cols=105 Identities=25% Similarity=0.495 Sum_probs=94.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||++|+.++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34579999999999999999999999999888888877 44456677788899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||++++++|+.+..|+..+.++.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~ 110 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS 110 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998753
No 45
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=1.7e-24 Score=132.35 Aligned_cols=103 Identities=60% Similarity=1.011 Sum_probs=94.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||+.++..++..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999999999988888888877777778888899999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||++++.+++.+..|+..+.+..
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~ 104 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVK 104 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 46
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=139.83 Aligned_cols=106 Identities=28% Similarity=0.438 Sum_probs=87.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEEeCCeEEEEEEEeCCCccchhh-hHHHHhhcCC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-EDSYLQHTEVDDVMCILDVLDTAGQEEFSA-MREQYMRKGD 85 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~~~ 85 (115)
.....+||+++|++|||||||+++|.+..+.....++. .+.+...+.+++..+.+.+||++|+.++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 44568999999999999999999997554432333333 366666778899999999999999988765 8888999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||+++++||+.+..|+.++.+..
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 126 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGR 126 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988753
No 47
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.93 E-value=6.4e-25 Score=139.56 Aligned_cols=105 Identities=35% Similarity=0.625 Sum_probs=95.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45689999999999999999999999999888888877 44456677888899999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||++++++++.+..|+..+.++.
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~ 110 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA 110 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754
No 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=6.9e-25 Score=137.86 Aligned_cols=105 Identities=30% Similarity=0.579 Sum_probs=95.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 445679999999999999999999999999888888877 4445667788899999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||++++.+++.+..|+.++.++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~ 116 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETY 116 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765
No 49
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.93 E-value=6e-25 Score=136.49 Aligned_cols=106 Identities=33% Similarity=0.579 Sum_probs=92.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||+||+..+..++..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 445689999999999999999999999998877778777 4556677888989999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+..+.+..
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC 111 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998753
No 50
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=1.4e-24 Score=136.25 Aligned_cols=107 Identities=58% Similarity=0.981 Sum_probs=85.7
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
...+..+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||++|+.++..++..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 45677899999999999999999999999988888888877777777888999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+++|||++++.+++.+..|+..+.++.
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 122 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVK 122 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988764
No 51
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.93 E-value=1.1e-24 Score=136.79 Aligned_cols=107 Identities=27% Similarity=0.506 Sum_probs=95.2
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
......+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+.+||++|+.++..++..+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 3455689999999999999999999999999888778877 444566677888899999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++++++.+..|+..+.++.
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 124 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYS 124 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998763
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.8e-24 Score=136.64 Aligned_cols=104 Identities=40% Similarity=0.743 Sum_probs=93.9
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|++|||||||++++.++.+...+.++.+..+...+.+++..+.+.+||++|+.. ..++..+++.+|++|
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3557999999999999999999999999988888888877777778889999999999999988 788889999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||++++++|+.+..|+..+.+..
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~ 128 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIK 128 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998753
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.9e-24 Score=133.12 Aligned_cols=103 Identities=42% Similarity=0.777 Sum_probs=93.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|++|||||||++++.++.+...+.++.+..+......++..+.+.+||+||+.++..+...+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 36899999999999999999999999888888888866666677788889999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 91 YSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
||++++++++.+..|+..+.+..
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~ 104 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIK 104 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.93 E-value=2.2e-24 Score=135.94 Aligned_cols=104 Identities=24% Similarity=0.455 Sum_probs=90.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeE-----------------------------
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVM----------------------------- 59 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------- 59 (115)
...+||+++|+++||||||++++++..+...+.++.+ +.....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 3579999999999999999999999999888888877 4445555555544
Q ss_pred --------EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 60 --------CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 60 --------~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+.+.+||+||+..+..++..+++.+|++|+|||++++.+++.+..|+..+.++.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~ 146 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS 146 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC
Confidence 889999999999999999999999999999999999999999999999998754
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=9.4e-26 Score=140.82 Aligned_cols=104 Identities=33% Similarity=0.591 Sum_probs=69.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+++||++|+.++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35689999999999999999999999988777777777 44456677888899999999999999998888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+|||++++++|+.+..|+..+.++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~ 109 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH 109 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=140.02 Aligned_cols=106 Identities=30% Similarity=0.494 Sum_probs=84.9
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 456689999999999999999999999999887777777 5556667788888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+..+.+..
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 127 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLA 127 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987753
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=5.9e-25 Score=135.30 Aligned_cols=103 Identities=31% Similarity=0.627 Sum_probs=87.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
..+||+++|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||+.++..++..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999999877777777 4445667778888999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++++.+..|+..+.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~ 105 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA 105 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 58
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.5e-24 Score=135.79 Aligned_cols=105 Identities=41% Similarity=0.748 Sum_probs=95.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|+++||||||++++.++.+...+.++.+..+......++..+.+.+|||+|+.++..++..+++.+|++|
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34579999999999999999999999999888888888766666778888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|||++++++++.+..|+..+.+..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~ 109 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIK 109 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887754
No 59
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.93 E-value=2.8e-25 Score=142.75 Aligned_cols=110 Identities=27% Similarity=0.481 Sum_probs=98.0
Q ss_pred CCCCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhh
Q psy9154 4 APNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMR 82 (115)
Q Consensus 4 ~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~ 82 (115)
.........+||+++|++|||||||+++++.+.+...+.++.+ +........++..+.+.+|||+|+..+..++..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 3345677889999999999999999999998888887788887 555666778889999999999999999999999999
Q ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 83 KGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
.+|++|+|||++++.+|+.+..|+..+.++.
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 117 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC 117 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998764
No 60
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=8.5e-25 Score=139.23 Aligned_cols=105 Identities=32% Similarity=0.542 Sum_probs=92.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++..+.+...+..++..+.+.+||++|++++..++..+++.+|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34567999999999999999999999999988888888887777788889999999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|+|||++++++|+.+. .|+..+.+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~ 131 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHH 131 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 899988875
No 61
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.6e-24 Score=133.74 Aligned_cols=107 Identities=33% Similarity=0.570 Sum_probs=85.9
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
+.....+||+++|+++||||||++++.++.+. ..+.++.+ +........++..+.+.+||+||+.++..++..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999999885 35667766 44445567788899999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++|+|||++++.+++.+..|+..+.++.
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 113 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYA 113 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=4.2e-24 Score=133.92 Aligned_cols=106 Identities=25% Similarity=0.458 Sum_probs=93.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE--EEEEEeCCe---------EEEEEEEeCCCccchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY--LQHTEVDDV---------MCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~l~~~d~~g~~~~~~~ 76 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++. .+.+.+||+||+.++..+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 456689999999999999999999999999888888877443 344555555 789999999999999999
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
...+++.+|++|+|||++++.+++.+..|+..+..+.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 123 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998754
No 63
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=139.89 Aligned_cols=105 Identities=31% Similarity=0.543 Sum_probs=90.9
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+......++..+.+.+||++|+.++..++..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34568999999999999999999999999998888888877766777778888999999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+|||++++++|+.+..|+..+.+.
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~ 124 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEG 124 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 64
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=132.89 Aligned_cols=103 Identities=30% Similarity=0.427 Sum_probs=81.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc--hhhhHHHHhhcCCEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE--FSAMREQYMRKGDGF 87 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--~~~~~~~~~~~~~~~ 87 (115)
+..+||+++|++|||||||++++.+..+...+.+...+.+...+.+++..+.+.+||++|+.. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988866554433355666778889999999999999987 567788899999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|||++++++|+.+..|+..+.+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~ 106 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRT 106 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3e-24 Score=136.78 Aligned_cols=106 Identities=31% Similarity=0.593 Sum_probs=93.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++++..+...+.++.+ +.....+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 345579999999999999999999999999887778877 4555667788888999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++.+|+.+..|+..+.++.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~ 122 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA 122 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988753
No 66
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=1.4e-25 Score=139.66 Aligned_cols=103 Identities=34% Similarity=0.574 Sum_probs=77.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+...+.++.++.+...+..++..+.+++||++|+.++..++..+++.+|++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 45799999999999999999999999998888888776555555667778889999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|||++++++|+++. .|+..+.++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~ 109 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHY 109 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 799998875
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.8e-24 Score=137.33 Aligned_cols=104 Identities=33% Similarity=0.535 Sum_probs=94.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+.++..++..+++.+|++|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35579999999999999999999999999888888888666566778888999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
+|||++++++|+.+ ..|+..+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~ 126 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF 126 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 7899888775
No 68
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.8e-25 Score=140.72 Aligned_cols=106 Identities=26% Similarity=0.514 Sum_probs=95.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++.++.+...+.++.+ +.....+..++..+.+++||++|+..+..++..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 345689999999999999999999999998887777777 4556667778888899999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++|+.+..|+..+.++.
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 125 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYS 125 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998754
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.92 E-value=2e-24 Score=137.04 Aligned_cols=105 Identities=30% Similarity=0.551 Sum_probs=93.5
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||+.++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45689999999999999999999999999888888877 55566677788889999999999999999989999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|+|||++++.+++.+..|+.++....
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQA 110 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987653
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.1e-24 Score=137.57 Aligned_cols=103 Identities=35% Similarity=0.549 Sum_probs=87.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+||+++|++|||||||++++.++.+...+.++.+..+...+..++..+.+.+|||+|+.++..++..+++.+|++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999999998888888887666667788889999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
|||++++++|+.+ ..|+..+.+.
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~ 126 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF 126 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 7899988765
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=1.4e-24 Score=134.89 Aligned_cols=105 Identities=33% Similarity=0.589 Sum_probs=80.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeC-CeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVD-DVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
....+||+++|++|||||||++++.+..+...+.++.+ +.....+.++ +..+.+.+||+||+.++..+...+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45679999999999999999999999998888878776 5555666666 567889999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++++.+..|+.++.++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHA 111 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 72
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=4.1e-24 Score=137.24 Aligned_cols=105 Identities=30% Similarity=0.459 Sum_probs=85.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCC--CCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-hhhhHHHHhhcC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKL--FVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-FSAMREQYMRKG 84 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~~ 84 (115)
.....+||+++|++|||||||+++|.+.. +...+.++..+.+...+.+++..+.+.+|||+|+.. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 44567999999999999999999999643 444444444466677778899999999999999887 566777788999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++|+|||+++++||+.+..|+..+.+.
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~ 140 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRA 140 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.92 E-value=3e-25 Score=140.75 Aligned_cols=104 Identities=29% Similarity=0.415 Sum_probs=66.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC--CCCCCCCCCcc-eeEEEEEEeCCe--EEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK--LFVTDYDPTIE-DSYLQHTEVDDV--MCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
...+||+++|++|||||||++++.++ .+...+.++.+ +.....+.+++. .+.+.+||++|+.++..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999999998 88777888887 666677777777 88999999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|++|+|||++++++|+.+..|+..+.++.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 126 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSAR 126 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998764
No 74
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=3.5e-24 Score=131.95 Aligned_cols=102 Identities=26% Similarity=0.406 Sum_probs=77.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhh-hHHHHhhcCCEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSA-MREQYMRKGDGFLL 89 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~~il 89 (115)
.+||+++|++|||||||++++.+..+.....++.. +.+...+..++..+.+.+||++|+.++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777655444444 56667778899999999999999998876 78888999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
|||++++++|+.+..|+.++.+..
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~ 105 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGR 105 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS
T ss_pred EEECCChHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764
No 75
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=3.5e-24 Score=131.60 Aligned_cols=100 Identities=30% Similarity=0.357 Sum_probs=69.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEE
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVY 91 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~ 91 (115)
.+||+++|++|||||||++++.+..+. ...++.+..+.....+++..+.+.+||++|+.++..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999999876654 3345566666667788999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHhh
Q psy9154 92 SVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 92 d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++++++|+.+..|+..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~ 101 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRA 101 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHC
T ss_pred ECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=1.6e-24 Score=136.67 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=84.4
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKG 84 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~ 84 (115)
........||+++|+++||||||++++.++.+.. .+.++.+... ..+ ....+.+++|||+|+.++..++..+++.+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 4567789999999999999999999999999988 7788877322 222 34456789999999999999999999999
Q ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 85 DGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 85 ~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|++|+|||++++++|+.+..|+..+.+.
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~ 115 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKH 115 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988764
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.91 E-value=3.7e-24 Score=137.00 Aligned_cols=105 Identities=29% Similarity=0.490 Sum_probs=90.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCe----------EEEEEEEeCCCccchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDV----------MCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~l~~~d~~g~~~~~~~ 76 (115)
.....+||+++|+++||||||++++.++.+...+.++.+ +.....+.+++. .+.+.+||++|+.++..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 456789999999999999999999999988777777766 333455556655 788999999999999999
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+..+++.+|++|+|||++++.+++.+..|+..+.+.
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~ 136 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887653
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.91 E-value=2e-23 Score=131.87 Aligned_cols=103 Identities=30% Similarity=0.482 Sum_probs=82.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-hhhhHHHHhhcCCE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK--LFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-FSAMREQYMRKGDG 86 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~~~~~~~ 86 (115)
...+||+++|++|||||||+++|++. .+...+.++..+.+...+.+++..+.+.+||++|+.. +..+...+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45799999999999999999999963 3444444433466667778899999999999999876 55677788999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|+|||+++++||+++..|+..+.+.
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~ 109 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRA 109 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988765
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=1.6e-23 Score=131.54 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=87.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
.....+||+++|++|||||||++++.++.+...+.++.+..+.. +. ...+.+.+||++|+.++..++..+++.+|++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 34568999999999999999999999999987778887754432 23 3356789999999999999999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+|||++++++++.+..|+..+.+.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~ 119 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDK 119 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988763
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=1.2e-24 Score=136.73 Aligned_cols=104 Identities=20% Similarity=0.230 Sum_probs=82.9
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCC-----------CCcc-eeEEEEE-EeCCeEEEEEEEeCCCccc
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYD-----------PTIE-DSYLQHT-EVDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~-----------~~~~-~~~~~~~-~~~~~~~~l~~~d~~g~~~ 72 (115)
.......+||+++|++|||||||++ ++.+.+...+. ++.+ +.....+ ..++..+.+++|||+|+.+
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3456678999999999999999994 55556655533 3333 2222223 5567888999999999999
Q ss_pred hhhhHHHHhhcCCEEEEEEeCC------CHHHHHHHHHHHHHHH
Q psy9154 73 FSAMREQYMRKGDGFLLVYSVT------DQQSYENIKHFYTQIL 110 (115)
Q Consensus 73 ~~~~~~~~~~~~~~~il~~d~~------~~~s~~~~~~~~~~i~ 110 (115)
+..++..+++.+|++|+|||++ +.++|+.+..|+.++.
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~ 130 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG 130 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999 6788999999998873
No 81
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.90 E-value=5.3e-24 Score=133.49 Aligned_cols=101 Identities=24% Similarity=0.358 Sum_probs=75.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC--CCCCCCCCCcc-eeEEEEEEe---CCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK--LFVTDYDPTIE-DSYLQHTEV---DDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~~~~~~-~~~~~~~~~---~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.+||+++|++|||||||++++.+. .+...+.++.+ +.....+.+ ++..+.+++||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999984 56666677776 333333332 345678999999999999999999999999
Q ss_pred EEEEEEeCCCH-HHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQ-QSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~-~s~~~~~~~~~~i~~~ 112 (115)
++++|||++++ ++|+.+..|+.++.+.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~ 109 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR 109 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh
Confidence 99999999997 5899999999998764
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.90 E-value=4e-25 Score=140.03 Aligned_cols=106 Identities=36% Similarity=0.627 Sum_probs=91.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|+++||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|+.++..++..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 345689999999999999999999999888777666666 4556677888999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
+|+|||++++++|+.+..|+..+.++.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~ 135 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYA 135 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999997653
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=3e-23 Score=127.20 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=81.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEe
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYS 92 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d 92 (115)
+||+++|++|||||||++++.++.+.. +.|+.+. ....+.. ..+.+++||+||+.++..++..+++.+|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999988864 4566652 2223333 34678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9154 93 VTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~~s~~~~~~~~~~i~~~ 112 (115)
++++++|+.+..|+..+.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~ 96 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAE 96 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999988763
No 84
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=1.4e-22 Score=128.34 Aligned_cols=103 Identities=30% Similarity=0.506 Sum_probs=89.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
...+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|+.++..+...+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3469999999999999999999999999887778776 444667788999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|||+++..+++++..|+..+.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~ 106 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH 106 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888654
No 85
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.90 E-value=1.7e-23 Score=134.00 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=89.4
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEe-CCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEV-DDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.....+||+++|++|||||||+++++++.+...+.++.+... ...... ++..+.+.+|||+|+.++..++..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 455689999999999999999999999998877777777443 333333 344588999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
++|+|||++++.+++.+..|+..+.+..
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVV 114 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=129.76 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=85.0
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCC-CCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKL-FVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
......+||+++|++|||||||++++.+.. +...+.++.+ .....+.+++ +.+.+||++|+.++..++..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 345668999999999999999999999887 5666667766 3344445554 57899999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|+|||++++++|+.+..|+..+.+.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~ 119 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNH 119 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998765
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=2.1e-22 Score=127.07 Aligned_cols=105 Identities=30% Similarity=0.491 Sum_probs=93.5
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDG 86 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ 86 (115)
.....+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+++||++|+.++..+...+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 345679999999999999999999999999888888888 4446677889999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 87 FLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 87 ~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+++|||+++..+|+++..|+..+.+.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~ 130 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDH 130 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.1e-23 Score=129.04 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=80.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ +.+++||++|+.++..++..+++.+|++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45799999999999999999999988886 556666522 23344444 678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+.++.+.
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~ 112 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAH 112 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTS
T ss_pred EEeCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 89
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.89 E-value=1.7e-22 Score=136.16 Aligned_cols=102 Identities=31% Similarity=0.555 Sum_probs=94.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~ 90 (115)
..+||+++|++|||||||++++.++.+...+.++.++.+...+..++..+.+++||++|+.++..+...+++.+|++|+|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 45899999999999999999999999988888888877777788899999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 91 YSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 91 ~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
||++++.+|+.+. .|+..+.++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~ 256 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHH 256 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999997 799988775
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=4.5e-23 Score=130.75 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=77.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ +.+++|||||+.++..++..+++.+|++|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999988874 455666533 34455666 688999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+++..|+.++.+.
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~ 121 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTD 121 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998764
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.89 E-value=1.4e-22 Score=127.75 Aligned_cols=99 Identities=12% Similarity=0.284 Sum_probs=83.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ +.+++|||+|+.++..++..+++.+|++|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999998885 455666643 34455666 678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+++..|+.++.+.
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~ 119 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNI 119 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEECCChHHHHHHHHHHHHHHcc
Confidence 99999999999999999998764
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.89 E-value=3.3e-23 Score=129.40 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=83.2
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCC
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGD 85 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 85 (115)
.......+||+++|++|||||||++++.++.+ ..+.++.+.. ...+.+++ +.+.+||++|+.++..++..+++.+|
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 34566789999999999999999999999988 4455665522 23344444 67899999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|+|||++++++|+.+..|+..+.+.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~ 117 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAH 117 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988764
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=2e-22 Score=126.01 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=84.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++. ...+.++.+.. ...+..+ ...+++|||||+.++..++..+++.+|++|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999888 56667776632 3344444 3678899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+.++.+.
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~ 114 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVE 114 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEECcCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.89 E-value=1.2e-22 Score=127.08 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=82.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.+..+. .+.++.+. ....+..+ .+.+++||++|+..+..++..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999988653 34555552 23344455 4678899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
|||++++++|+.+..|+.++.+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~ 111 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLE 111 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTT
T ss_pred EEECcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988755
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.89 E-value=1.8e-22 Score=127.40 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=78.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|++|||||||++++.++.+.. +.++.+ .....+... .+.+.+||+||+.++..++..+++.+|++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4567999999999999999999999888763 445555 223333443 367899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|||++++++|+.+..|+.++.+.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~ 125 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQE 125 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988763
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.2e-24 Score=138.27 Aligned_cols=103 Identities=34% Similarity=0.574 Sum_probs=92.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+...+.++..+.+...+..++..+.+++||++|+.++..++..+++.+|++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 45799999999999999999999999998888888887666666777888899999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH-HHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIK-HFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~-~~~~~i~~~ 112 (115)
|||++++++|+.+. .|+..+.+.
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~ 131 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHH 131 (204)
Confidence 99999999999997 898888764
No 97
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=6.3e-22 Score=121.88 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=83.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+.. +.++.+. ....+.++ ...+.+||+||+.++..++..+++.+|++|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 346999999999999999999999988854 5556552 23334444 4578999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+..+.+.
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~ 103 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEE 103 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888764
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.88 E-value=1.7e-22 Score=127.69 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeE--EEEEEe-CCeEEEEEEEeCCCccchhhhH---H
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSY--LQHTEV-DDVMCILDVLDTAGQEEFSAMR---E 78 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~l~~~d~~g~~~~~~~~---~ 78 (115)
.......+||+++|++|||||||++++.+. +... ++.+ +.. .....+ ++..+.+++||++|+++|..+. .
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 345677899999999999999999977664 4333 2322 111 222223 3566789999999999998877 8
Q ss_pred HHhhcCCEEEEEEeCCCH--HHHHHHHHHHHHHHhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQ--QSYENIKHFYTQILRV 112 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~--~s~~~~~~~~~~i~~~ 112 (115)
.+++++|++|+|||++++ ++++.+..|+.++.+.
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~ 126 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999997 7888888888887543
No 99
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.88 E-value=1.1e-21 Score=132.15 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=80.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC--CCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch-----hhhHHHHhh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK--LFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF-----SAMREQYMR 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----~~~~~~~~~ 82 (115)
..+||+++|++|||||||++++.++ .+. ..+.+|.+..+. ...+++ .+.+++||+||+.++ ..++..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 3689999999999999999999987 332 245556654333 233433 578999999999998 678899999
Q ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 83 KGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
++|++|+|||++++++|+++..|...+.+.
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l 109 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQL 109 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 999999999999999999998887666553
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=1.7e-21 Score=124.31 Aligned_cols=99 Identities=14% Similarity=0.275 Sum_probs=77.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCe-EEEEEEEeCCCccchhh-hHHHHhhcCCE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDV-MCILDVLDTAGQEEFSA-MREQYMRKGDG 86 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ 86 (115)
....+||+++|++|||||||++++.++.+...+.++...... +.+++. .+.+++|||||+.++.. ++..+++.+|+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 345799999999999999999999999998877765544333 455544 57899999999999988 88899999999
Q ss_pred EEEEEeCCCHH-HHHHHHHHHHHH
Q psy9154 87 FLLVYSVTDQQ-SYENIKHFYTQI 109 (115)
Q Consensus 87 ~il~~d~~~~~-s~~~~~~~~~~i 109 (115)
+|+|||+++.+ ++..+..|+..+
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~ 105 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQV 105 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHH
Confidence 99999999954 566665554444
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=3.6e-22 Score=124.41 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=79.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|++|||||||++++.++.+ ..+.++.+.. ...+..++ ..+.+||++|+.++..++..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5679999999999999999999998887 4556666622 33344444 678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++++.+..|+..+.+.
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~ 114 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQE 114 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTS
T ss_pred EEECCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999988764
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=4.2e-22 Score=124.94 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=82.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|+++||||||++++..+.+.. +.++.+. ....+..+ .+.+.+|||||+.++..++..+++.+|++|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV-NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC-CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce-EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999888754 4556552 23334444 4578999999999999988889999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++++.+..|+..+.+.
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~ 118 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDE 118 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTC
T ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888653
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.86 E-value=1.3e-21 Score=132.32 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=71.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCC---CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh---hHHHHhhcCCEE
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVT---DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA---MREQYMRKGDGF 87 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~~ 87 (115)
||+++|++|||||||++++.++.++. .+.+|.+..+.. ++ ..+++++|||+||++|.. ++..||++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 79999999999999999887664432 245676633322 22 347899999999999964 578999999999
Q ss_pred EEEEeCCCH--HHHHHHHHHHHHHHhh
Q psy9154 88 LLVYSVTDQ--QSYENIKHFYTQILRV 112 (115)
Q Consensus 88 il~~d~~~~--~s~~~~~~~~~~i~~~ 112 (115)
|+|||++++ ++++.+.+|++++.+.
T Consensus 77 IlV~Ditd~~~~~~~~l~~~l~~~~~~ 103 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLAMIIEYAYKV 103 (331)
T ss_dssp EEECCCSSCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHHhhc
Confidence 999999998 4444445556555443
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.2e-22 Score=131.55 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=78.5
Q ss_pred CCCCCCceeeEEEECCC---------CCcHHHHHHHHHh---CCCCCCCCCCc-c-eeEEEEE--------------EeC
Q psy9154 5 PNNNNITTYKLVVVGDG---------GVGKSAITIQFFQ---KLFVTDYDPTI-E-DSYLQHT--------------EVD 56 (115)
Q Consensus 5 ~~~~~~~~~ki~i~G~~---------~vGKtsl~~~~~~---~~~~~~~~~~~-~-~~~~~~~--------------~~~ 56 (115)
........+||+++|++ |||||||+++|.+ +.+...+.++. + +.....+ .++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 34567788999999999 9999999999998 55666666654 2 2211111 145
Q ss_pred CeEEEEEEEe-----------------------CCCccchhhhHHHHhh---------------------cCCEEEEEEe
Q psy9154 57 DVMCILDVLD-----------------------TAGQEEFSAMREQYMR---------------------KGDGFLLVYS 92 (115)
Q Consensus 57 ~~~~~l~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~il~~d 92 (115)
+..+.+++|| ++|+++|..++..+++ ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 6778999999 6666777777777776 7999999999
Q ss_pred CCCH--HHHHHHHHHHHHHHhh
Q psy9154 93 VTDQ--QSYENIKHFYTQILRV 112 (115)
Q Consensus 93 ~~~~--~s~~~~~~~~~~i~~~ 112 (115)
++++ +||+.+..|+.++.+.
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~ 193 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQ 193 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHH
Confidence 9998 9999999999998865
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=6.2e-20 Score=130.15 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=83.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFL 88 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 88 (115)
....+||+++|+++||||||++++.++.+.. +.+|.+..+ ..+.. ..+.+.+|||+|+..+..++..+++.+|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE-EEEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE-EEEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3567999999999999999999999998754 445655332 22333 3467899999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 89 LVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 89 l~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+|||++++++|+.+..|+.++.+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~ 418 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIIND 418 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTS
T ss_pred EEEECcchhHHHHHHHHHHHHhhh
Confidence 999999999999999999998764
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=8.5e-21 Score=128.82 Aligned_cols=99 Identities=20% Similarity=0.337 Sum_probs=76.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+||+++|+++||||||++++.++.+.... +|.+..+ ..+.. ..+.+.||||+|+..+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34679999999999999999999988876543 4444222 22233 34678999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 90 VYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 90 ~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|||++++++|+.+..|+..+.+.
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~ 261 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAE 261 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTC
T ss_pred EEECCchHHHHHHHHHHHHHHhh
Confidence 99999999999999998887654
No 107
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.2e-20 Score=117.30 Aligned_cols=96 Identities=15% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhc--
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTD---YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK-- 83 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~-- 83 (115)
....+||+++|++|||||||++++.+..+... +.++.. .....+.+.+||+||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 45679999999999999999999999877542 112211 11134568899999999998888888776
Q ss_pred --CCEEEEEEeCC-CHHHHHHHHHHHHHHHhh
Q psy9154 84 --GDGFLLVYSVT-DQQSYENIKHFYTQILRV 112 (115)
Q Consensus 84 --~~~~il~~d~~-~~~s~~~~~~~~~~i~~~ 112 (115)
+|++|+|||++ ++++++.+..|+..+.+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 148 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 148 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhh
Confidence 89999999999 899999999999888764
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=8.5e-19 Score=107.98 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=69.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh------hhHHHHhh-
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS------AMREQYMR- 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~- 82 (115)
..+||+++|++|||||||++++.+..+.....++.. +.....+..++ ..+++|||+|+.++. .+...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 468999999999999999999998776543333322 33344445555 468899999988764 45566765
Q ss_pred -cCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 83 -KGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 83 -~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+++++++++|.++.++ ...|+.++.+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~ 106 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME 106 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh
Confidence 8999999999998654 4557777654
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=2.4e-20 Score=119.32 Aligned_cols=97 Identities=13% Similarity=0.249 Sum_probs=78.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhc-
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTD---YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRK- 83 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~- 83 (115)
.....+||+++|++|||||||++++.+..+... +.++.... .....+.+||+||+.++..++..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 345679999999999999999999999887542 23332211 134568899999999999988888887
Q ss_pred ---CCEEEEEEeCC-CHHHHHHHHHHHHHHHhh
Q psy9154 84 ---GDGFLLVYSVT-DQQSYENIKHFYTQILRV 112 (115)
Q Consensus 84 ---~~~~il~~d~~-~~~s~~~~~~~~~~i~~~ 112 (115)
++++|+|||++ ++++|+.+..|+.++.+.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~ 112 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 112 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhc
Confidence 89999999999 889999999999988764
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=1e-19 Score=112.72 Aligned_cols=93 Identities=23% Similarity=0.249 Sum_probs=74.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGF 87 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 87 (115)
....+||+++|++|||||||++++.++.+...+.++.. +.....+..++. .+.+|||||+.++..++..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34578999999999999999999999988876655544 333444556665 467999999999998888889999999
Q ss_pred EEEEeCCC---HHHHHHHH
Q psy9154 88 LLVYSVTD---QQSYENIK 103 (115)
Q Consensus 88 il~~d~~~---~~s~~~~~ 103 (115)
|+|||+++ +++++.+.
T Consensus 83 i~v~d~~~~~~~~~~~~l~ 101 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEAIN 101 (178)
T ss_dssp EEEEETTCCCCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 99999998 55665543
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=2.5e-18 Score=107.36 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh------hhHHHH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS------AMREQY 80 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~~~~~ 80 (115)
+.+..+||+++|++|||||||++++.+..+.....++.. +.....+..++ ..+.+|||+|+..+. .+...+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 456789999999999999999999998765443333333 44444555554 578899999998774 456667
Q ss_pred hh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 81 MR--KGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 81 ~~--~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+. .++++++++|.++ ++....|+.++.+
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~ 110 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME 110 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh
Confidence 75 4999999999876 5667788887765
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=1.3e-18 Score=108.01 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=73.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh------h--HHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA------M--REQYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~--~~~~~ 81 (115)
..||+++|++|||||||++++.+..+. ..+..+..+.....+.+++.. +.+|||+|+.++.. + ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999999987643 333444445556666777654 78999999865321 1 12468
Q ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
+.+|++++|||++++.+++ ...|+..+.+.
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~ 111 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIAR 111 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 8999999999999988876 45788877764
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=7.1e-19 Score=125.84 Aligned_cols=103 Identities=18% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEE---------EeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT---------EVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
.....+||+++|+++||||||++++.+..+...+.++.+..+.... ..++..+.+.+||++|++.+..++.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999999998888888874443221 1223467899999999999999999
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~~ 113 (115)
.+++.+|++|+|||+++. +.+..|+.++.++.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~ 148 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG 148 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC
Confidence 999999999999999765 66788999988764
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=3.1e-18 Score=107.52 Aligned_cols=91 Identities=16% Similarity=0.295 Sum_probs=64.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCC----------ccchhhhH
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAG----------QEEFSAMR 77 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~ 77 (115)
....+||+++|++|||||||++++.+..+...+.++.+... ......+. .+.+||||| +..+..+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44679999999999999999999999887665555554222 22223333 488999999 77888888
Q ss_pred HHHhhcC---CEEEEEEeCCCHHHHHHH
Q psy9154 78 EQYMRKG---DGFLLVYSVTDQQSYENI 102 (115)
Q Consensus 78 ~~~~~~~---~~~il~~d~~~~~s~~~~ 102 (115)
..+++.+ |++++|+|++++.++...
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 124 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDV 124 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHH
Confidence 8898887 999999999997777664
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=7.4e-18 Score=108.68 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=67.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCC-CCCcceeEEEEEEeCCeEEEEEEEeCCCc------cc----hhhhHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY-DPTIEDSYLQHTEVDDVMCILDVLDTAGQ------EE----FSAMRE 78 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~----~~~~~~ 78 (115)
...+||+++|++|||||||++++++..+.... ..+............+ ..+.+|||||+ .. +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHH-H
Confidence 56799999999999999999999998775222 1112222223333333 56889999998 33 2223 3
Q ss_pred HHhhcCCEEEEEEeCCCHHHHH--HHHHHHHHHHh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYE--NIKHFYTQILR 111 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~--~~~~~~~~i~~ 111 (115)
.++..+|++|+|||++++.+|+ ....|+..+.+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~ 138 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS 138 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH
Confidence 4578889999999999988875 23456666654
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=2e-17 Score=100.74 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=61.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc-------hhhhHHHHhhc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE-------FSAMREQYMRK 83 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-------~~~~~~~~~~~ 83 (115)
.||+++|++|||||||++++.+..+. ..+..+..+.....+..++. .+.+||+||+.. +......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754 22333333445555566665 678999999887 45566678999
Q ss_pred CCEEEEEEeCCCHHH
Q psy9154 84 GDGFLLVYSVTDQQS 98 (115)
Q Consensus 84 ~~~~il~~d~~~~~s 98 (115)
+|++|+|+|++++.+
T Consensus 80 ~~~~i~v~d~~~~~~ 94 (161)
T 2dyk_A 80 AEVVLFAVDGRAELT 94 (161)
T ss_dssp CSEEEEEEESSSCCC
T ss_pred CCEEEEEEECCCccc
Confidence 999999999998533
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-18 Score=108.67 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=72.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCC-----------ccchhhhHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG-----------QEEFSAMREQYM 81 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------~~~~~~~~~~~~ 81 (115)
+||+++|++|||||||++++.+..+...+.++.... ....... .+.+||||| ++.+..+...++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999998876665544311 1222222 588999999 678888888899
Q ss_pred hc-CCEEEEEEeCCCHHHHHHH-HHHHH
Q psy9154 82 RK-GDGFLLVYSVTDQQSYENI-KHFYT 107 (115)
Q Consensus 82 ~~-~~~~il~~d~~~~~s~~~~-~~~~~ 107 (115)
+. +++++++|++.|.++++++ ..|..
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence 88 9999999999999999888 77765
No 118
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.73 E-value=5.1e-17 Score=107.05 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=72.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhh----
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMR---- 82 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~---- 82 (115)
.+..+||+++|++|||||||++++++..+. ..+.++........+..++. .+.+|||||+.++......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHH
Confidence 356899999999999999999999988753 33333333333444455554 6889999999887655444443
Q ss_pred -----cCCEEEEEEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 83 -----KGDGFLLVYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 83 -----~~~~~il~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
.+|++++|++++... +... ..|++.+.+.
T Consensus 111 ~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~ 145 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQT 145 (262)
T ss_dssp HTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHH
Confidence 789999999998754 4433 4777777764
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.72 E-value=2.8e-17 Score=110.66 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCCCceeeEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh----------
Q psy9154 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS---------- 74 (115)
Q Consensus 7 ~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------- 74 (115)
.++...-.|+++|.+|||||||++++++..+... ...+...........+ ....+.||||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 4566788999999999999999999999887532 2222222222222333 14578899999985433
Q ss_pred hhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 75 AMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 75 ~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
.....++..+|++++|+|++++.++.....|++.+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~ 120 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP 120 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence 5666788999999999999998888888888887765
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.71 E-value=8.9e-17 Score=105.74 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=70.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhh----------hHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSA----------MREQYM 81 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~~~~~ 81 (115)
.||+++|++|||||||++++.+..+.....+... +.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3899999999999999999998765433333333 555555666665 688999999876653 556677
Q ss_pred --hcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 82 --RKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 82 --~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
..+|++|+|+|.++.+++..+..|+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~ 107 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF 107 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH
Confidence 78999999999999887776666554
No 121
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=101.68 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCC--Ccc-eeEEEEEEeCCeEEEEEEEeCCCc-----------cch
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDP--TIE-DSYLQHTEVDDVMCILDVLDTAGQ-----------EEF 73 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~d~~g~-----------~~~ 73 (115)
.....+||+++|++|||||||++++++..+.....+ +.. ......+.+++. .+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHH
Confidence 445679999999999999999999998877654433 222 334444555554 5789999993 334
Q ss_pred hhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
......+++++|++|+|+|+++.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~ 125 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRY 125 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCC
T ss_pred HHHHHhcCCCCcEEEEEeeCCCC
Confidence 44455566788999999998764
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.70 E-value=2.5e-16 Score=103.70 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=68.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-cceeEEEEEEeCCeEEEEEEEeCCCccchhh------hHHHHh-
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPT-IEDSYLQHTEVDDVMCILDVLDTAGQEEFSA------MREQYM- 81 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~~~~~~- 81 (115)
...+||+++|++|||||||++++.+..+.....+. ..+.....+...+ ..+.+||+||+..+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45799999999999999999999987764322222 2233333333333 5789999999887654 345555
Q ss_pred -hcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 82 -RKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 82 -~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
..+|++++|+|.++.++.. .|+..+.+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~ 108 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE 108 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh
Confidence 4899999999999966543 46666554
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.70 E-value=4.7e-16 Score=97.24 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=69.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCC----------ccchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAG----------QEEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g----------~~~~~~~ 76 (115)
+....+||+++|++|||||||++++++..+. ...++.+... ......+. .+.+||||| +..+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 4556789999999999999999999988743 3334433222 12222232 377999999 7778888
Q ss_pred HHHHhhcC---CEEEEEEeCCCH--HHHHHHHHHHHH
Q psy9154 77 REQYMRKG---DGFLLVYSVTDQ--QSYENIKHFYTQ 108 (115)
Q Consensus 77 ~~~~~~~~---~~~il~~d~~~~--~s~~~~~~~~~~ 108 (115)
...+++.+ +++++|+|.+++ .+...+..|+..
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~ 131 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS 131 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 88888877 999999999875 345555566654
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=2.3e-16 Score=104.59 Aligned_cols=96 Identities=10% Similarity=0.126 Sum_probs=68.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEEeCCeEEEEEEEeCCCccchhh----------hHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-EDSYLQHTEVDDVMCILDVLDTAGQEEFSA----------MREQ 79 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~~~ 79 (115)
..++|+++|.+|||||||++++.+..+.....+.. .+.....+...+. .+.+|||||...+.. +...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 46899999999999999999999887643333333 2444555555554 467899999877652 2333
Q ss_pred Hh--hcCCEEEEEEeCCCHHHHHHHHHHHHH
Q psy9154 80 YM--RKGDGFLLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 80 ~~--~~~~~~il~~d~~~~~s~~~~~~~~~~ 108 (115)
++ ..+|++|+|+|.++.++...+..|+.+
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~ 110 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLE 110 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHh
Confidence 33 689999999999997766555555443
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.70 E-value=1.7e-16 Score=106.55 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=68.5
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCcceeEEEEEEeCCeEEEEEEEeCCCccc--------hhhhHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTD--YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE--------FSAMREQ 79 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--------~~~~~~~ 79 (115)
....+|+++|.+|||||||++++++..+... .+.+........... ...++.+|||||..+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 5567899999999999999999999887531 222222222222222 245788999999876 4556667
Q ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHH-HHHHh
Q psy9154 80 YMRKGDGFLLVYSVTDQQSYENIKHFY-TQILR 111 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~s~~~~~~~~-~~i~~ 111 (115)
+++.+|++++|+|++++.+.. ..|+ +.+.+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~ 113 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKP 113 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGG
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHh
Confidence 899999999999999864433 3454 44443
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.69 E-value=3.1e-16 Score=103.69 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=70.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhh------hHHHHh-
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSA------MREQYM- 81 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------~~~~~~- 81 (115)
+..+||+++|++|||||||++++.+..+.....+... +.....+..++. .+.+||+||+..+.. +...++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 3568999999999999999999998876433334333 444445555665 488999999887765 555666
Q ss_pred -hcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 82 -RKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 82 -~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
..+|++++|+|.++.+ ....|+..+.+
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~ 106 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFE 106 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHH
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHh
Confidence 6899999999999864 33344444444
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.69 E-value=1.6e-16 Score=105.34 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=66.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh------hhHHHHhh--
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLF-VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS------AMREQYMR-- 82 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~-- 82 (115)
.+||+++|++|||||||++++.+..+ ..+++.+..+. ....+.. ...+++|||||+..+. .+...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999998653 33333222222 2223343 5578999999998775 45666776
Q ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 83 KGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
.+|++|+|+|+++.++. ..|..++.+
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~ 105 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE 105 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh
Confidence 69999999999997654 356555543
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=7.2e-17 Score=113.06 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=71.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCc----------cchhhhH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ----------EEFSAMR 77 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----------~~~~~~~ 77 (115)
...+||+++|+++||||||++++++..+. ..+..+..+.....+..++.. +.+|||||+ +.|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999988763 333444445445555666654 789999997 5565555
Q ss_pred H-HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 78 E-QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 78 ~-~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
. .+++.+|++++|+|++++.+++.+ .|+..+.+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~ 284 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE 284 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH
Confidence 5 488999999999999998888776 57776654
No 129
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.67 E-value=6.2e-16 Score=101.47 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=65.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCC-CCCCCCCC--cceeEEEEEEeCCeEEEEEEEeCCCccchh----------
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKL-FVTDYDPT--IEDSYLQHTEVDDVMCILDVLDTAGQEEFS---------- 74 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------- 74 (115)
+....++|+++|++|||||||++++++.. +.....++ ........+..++. .+.+|||||...+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999876 44444443 22333444455554 58899999976542
Q ss_pred -hhHHHHhhcCCEEEEEEeCCCHHH-HHHHHHHHHHH
Q psy9154 75 -AMREQYMRKGDGFLLVYSVTDQQS-YENIKHFYTQI 109 (115)
Q Consensus 75 -~~~~~~~~~~~~~il~~d~~~~~s-~~~~~~~~~~i 109 (115)
.....+++.+|++|+|+|+++... ...+..|+.++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~ 132 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI 132 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 122336789999999999987222 23333444443
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=8.1e-16 Score=100.60 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=56.4
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCC---cceeEEEEEEeCCeEEEEEEEeCCCc--------cchhhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPT---IEDSYLQHTEVDDVMCILDVLDTAGQ--------EEFSAM 76 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~d~~g~--------~~~~~~ 76 (115)
.....+||+++|.+|||||||++++++..+.....+. ...........++. .+.+|||||. ..+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC--HVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE--EEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc--EEEEEECCCCCCCCCCcHHHHHHH
Confidence 4566899999999999999999999987765432222 12233334444544 5789999996 333222
Q ss_pred HHHHh----hcCCEEEEEEeCCC
Q psy9154 77 REQYM----RKGDGFLLVYSVTD 95 (115)
Q Consensus 77 ~~~~~----~~~~~~il~~d~~~ 95 (115)
...++ +.+|++|+|+|+++
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTB
T ss_pred HHHHHHhcCCCCCEEEEEEeCCC
Confidence 22333 89999999999986
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.66 E-value=2.5e-16 Score=100.82 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccee-EEEEEEeC-CeEEEEEEEeCCC----------ccchhh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDS-YLQHTEVD-DVMCILDVLDTAG----------QEEFSA 75 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~d~~g----------~~~~~~ 75 (115)
.....+||+++|++|||||||++++++..+........+.. ........ .....+.+||||| +..+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34457899999999999999999999886322222222211 11122222 3335688999999 455667
Q ss_pred hHHHHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 76 MREQYMRK---GDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 76 ~~~~~~~~---~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
+...++.. +|++|+|+|.+++.+ +....|+..+.
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~ 141 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFA 141 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHG
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 77778776 778999999988533 22234444443
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=1.3e-15 Score=106.76 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=62.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc---------hhhhHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE---------FSAMREQYM 81 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~~ 81 (115)
.+|+++|.++||||||++++++.... ..++.+..+.....+.+++.. +.+|||+|... +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987643 333333335556666777764 67999999664 345667789
Q ss_pred hcCCEEEEEEeCCCHHHHH--HHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYE--NIKHFYT 107 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~--~~~~~~~ 107 (115)
+.+|++|+|+|++++.+.. .+..|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~ 107 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR 107 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999998854432 3344443
No 133
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=5.5e-16 Score=102.45 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=66.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHH-------HH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE-------QY 80 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~-------~~ 80 (115)
...+||+++|.+|||||||++++++..+.. ...++...........+ ...+.+|||||..++..+.. .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 457999999999999999999999887632 22222222222223333 35688999999876643221 12
Q ss_pred --hhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHhh
Q psy9154 81 --MRKGDGFLLVYSVTDQQSYENI-KHFYTQILRV 112 (115)
Q Consensus 81 --~~~~~~~il~~d~~~~~s~~~~-~~~~~~i~~~ 112 (115)
...+|++++|+|++.. ++... ..|++.+.+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~ 148 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDS 148 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHH
Confidence 2379999999998764 34433 4788777654
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.65 E-value=2.4e-16 Score=111.55 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhH--------HHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMR--------EQYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~ 81 (115)
.+||+++|.+|||||||++++.+... ...+..+..+.....+.+++. .+.+|||||..++.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 57899999999999999999998753 333444444555555666664 58899999987765433 2367
Q ss_pred hcCCEEEEEEeCCCHHHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIKHF 105 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~~~ 105 (115)
..+|++++|+|.+++.+++.+..+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~ 334 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEI 334 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHH
Confidence 899999999999998887644333
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.63 E-value=1.1e-14 Score=101.04 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCC---Ccc--------eeEEE-----EEEe---CCeEEEEEEEeCC
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDP---TIE--------DSYLQ-----HTEV---DDVMCILDVLDTA 68 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~---~~~--------~~~~~-----~~~~---~~~~~~l~~~d~~ 68 (115)
.....+||+++|++++|||||++++.+......... +.. ..+.. .... ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 455689999999999999999999987543321100 000 00000 0000 1223678999999
Q ss_pred CccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 69 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
|+.+|......++..+|++|+|+|++++.++....+|+..+...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~ 127 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999999999987788888888776654
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=2.7e-15 Score=102.30 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=71.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc----chhhhHHHHhh---cC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE----EFSAMREQYMR---KG 84 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~----~~~~~~~~~~~---~~ 84 (115)
.+|+++|.++||||||++++.+..+. ..+..+........+.+++ ...+.+||+||.. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999976543 2233222222223344443 1368899999954 34445555655 49
Q ss_pred CEEEEEEeCCC---HHHHHHHHHHHHHHHhhh
Q psy9154 85 DGFLLVYSVTD---QQSYENIKHFYTQILRVK 113 (115)
Q Consensus 85 ~~~il~~d~~~---~~s~~~~~~~~~~i~~~~ 113 (115)
+++|+|+|+++ +++++.+..|+.++.++.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~ 269 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 269 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence 99999999998 789999999999998763
No 137
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=4.4e-15 Score=104.53 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCC----------ccchhhh
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG----------QEEFSAM 76 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------~~~~~~~ 76 (115)
....+||+++|+++||||||++++.+... ...+..+..+.....+..++. .+.+||||| ++.|..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 45579999999999999999999997642 233444444444455566666 678999999 7778777
Q ss_pred HHH-HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 77 REQ-YMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 77 ~~~-~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+.. +++.+|++|+|+|++++.+ +....|+..+.+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~ 304 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE 304 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH
Confidence 664 8899999999999998433 233445555443
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=1.4e-15 Score=106.49 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=58.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc--------chhhhHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE--------EFSAMREQYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--------~~~~~~~~~~ 81 (115)
..+|+++|.+|||||||++++.+..+.. .++.+..+.....+.+++ ..+.+|||+|+. .+......++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 4689999999999999999999876642 222222233333333444 368899999985 5667778899
Q ss_pred hcCCEEEEEEeCCCHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYEN 101 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~ 101 (115)
+.+|++|+|+|++++.++..
T Consensus 81 ~~ad~il~vvD~~~~~~~~d 100 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD 100 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH
T ss_pred HhCCEEEEEEeCCCCCCHHH
Confidence 99999999999998766543
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.59 E-value=1.1e-15 Score=107.66 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=60.3
Q ss_pred CCCCCceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCC--------ccchhh
Q psy9154 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAG--------QEEFSA 75 (115)
Q Consensus 6 ~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g--------~~~~~~ 75 (115)
....+...+|+++|.+|||||||++++.+..+.. .++.+..+..... .......+.+|||+| +..+..
T Consensus 17 ~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 17 RGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp ------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHH
T ss_pred ChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHH
Confidence 3456677899999999999999999999876642 1111111222222 333334688999999 778888
Q ss_pred hHHHHhhcCCEEEEEEeCCC
Q psy9154 76 MREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 76 ~~~~~~~~~~~~il~~d~~~ 95 (115)
....+++.+|++|+|+|..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~ 114 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGRE 114 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSS
T ss_pred HHHhhHhhCCEEEEEEeCCC
Confidence 88899999999999999877
No 140
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=5.3e-16 Score=108.67 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=70.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC--CCCCCC-------------------------------CCCcceeEEEEEEeCC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK--LFVTDY-------------------------------DPTIEDSYLQHTEVDD 57 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 57 (115)
..+||+++|+.++|||||+++++.. .+.... ..|... .. ..+..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~-~~--~~~~~ 81 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINL-TF--MRFET 81 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC--------------CEEEC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEe-eE--EEEec
Confidence 4799999999999999999999864 332110 111111 11 12233
Q ss_pred eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 58 VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 58 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
....+.+|||||+.+|......+++.+|++|+|+|+++ .+|+++..|..+.++
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTRE 134 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHH
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHH
Confidence 34578999999999999999999999999999999999 788877766655544
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.58 E-value=3.2e-15 Score=105.93 Aligned_cols=89 Identities=27% Similarity=0.362 Sum_probs=69.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc-chh--------hhHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE-EFS--------AMREQYM 81 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~--------~~~~~~~ 81 (115)
+||+++|.++||||||++++.+..+ ...++.+..+.....+.+++. .+.+|||+|.. .+. .....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 8999999999999999999998753 344555555665666667665 47899999987 543 2345688
Q ss_pred hcCCEEEEEEeCCCHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIK 103 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~ 103 (115)
+.+|++|+|+|++++.+++...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH
Confidence 9999999999999987776643
No 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.58 E-value=3.6e-15 Score=104.16 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhh-------HH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAM-------RE 78 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-------~~ 78 (115)
+....+||+++|+.++|||||++++.+..+. .....+..+.....+.+.+.. .+.+|||||+.++..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999988763 223333334445555555442 6889999998876543 45
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.++..+|++|+|+|++..+. ...|+..+.+.
T Consensus 109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~ 139 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM 139 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT
T ss_pred HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc
Confidence 68889999999999944433 35666666553
No 143
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=9.2e-15 Score=103.59 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=61.6
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCC--CCCCC---------------------------CCCcc-eeEEEEEEeCCeE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKL--FVTDY---------------------------DPTIE-DSYLQHTEVDDVM 59 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~--~~~~~---------------------------~~~~~-~~~~~~~~~~~~~ 59 (115)
...+||+++|++++|||||++++++.. +...+ ....+ ........+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 356999999999999999999997541 11000 00001 0001111233344
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHH
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~ 100 (115)
..+.||||||+.+|......+++.+|++|+|+|+++++++.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~ 151 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-----
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcccc
Confidence 57899999999999999999999999999999999975543
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.56 E-value=9e-14 Score=97.55 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCC--CCCC-----------------------------CCCCcc-eeEEEEEEe
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKL--FVTD-----------------------------YDPTIE-DSYLQHTEV 55 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~--~~~~-----------------------------~~~~~~-~~~~~~~~~ 55 (115)
.....++|+++|++++|||||+++++... +... ..+... +.... .+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~ 90 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YF 90 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EE
Confidence 44567999999999999999999996431 1110 001111 11112 22
Q ss_pred CCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 56 DDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 56 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
......+.||||||+.+|......+++.+|++|+|+|+++.
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 23345789999999999999999999999999999999985
No 145
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.56 E-value=2.1e-14 Score=97.68 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhh
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT----------DQQSYENIKHFYTQILRV 112 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~~~~i~~~ 112 (115)
.+.+++||++||++++.++..||++++++|+|||++ +..++++...|+..+.+.
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999999 788999999999988764
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.54 E-value=1.2e-13 Score=94.86 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=65.4
Q ss_pred eee-EEEECCCCCcHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEeCCeEEEEEEEeCCCccc---------hhhhHHHH
Q psy9154 12 TYK-LVVVGDGGVGKSAITIQFFQKLFVTD-YDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE---------FSAMREQY 80 (115)
Q Consensus 12 ~~k-i~i~G~~~vGKtsl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~ 80 (115)
.++ |+++|.+|||||||++++.+..+... ...+..+.....+.+++. .+.+|||+|... +.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 456 99999999999999999998765321 222222344555667764 568999999622 22222 35
Q ss_pred hhcCCEEEEEEeCCCHH--HHHHHHHHHHHHHhh
Q psy9154 81 MRKGDGFLLVYSVTDQQ--SYENIKHFYTQILRV 112 (115)
Q Consensus 81 ~~~~~~~il~~d~~~~~--s~~~~~~~~~~i~~~ 112 (115)
+..+|++++|+|++++. +.+.+..|.+.+.+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l 288 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREI 288 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh
Confidence 78899999999999977 677777777666543
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=3.3e-14 Score=94.09 Aligned_cols=87 Identities=22% Similarity=0.382 Sum_probs=54.6
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCC-CCCCC-------CCCcc-eeEEEEEEeCCeEEEEEEEeCCCcc-------c
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKL-FVTDY-------DPTIE-DSYLQHTEVDDVMCILDVLDTAGQE-------E 72 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~-~~~~~-------~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~-------~ 72 (115)
+...++|+++|.+|+|||||+++++... +...+ .++.. +.....+..++..+.+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3457999999999999999999976544 33333 34444 3334444556666789999999973 3
Q ss_pred hhhhH-------HHHhhc-------------CCEEEEEEeCCC
Q psy9154 73 FSAMR-------EQYMRK-------------GDGFLLVYSVTD 95 (115)
Q Consensus 73 ~~~~~-------~~~~~~-------------~~~~il~~d~~~ 95 (115)
+..+. ..|+.. +|+++++++.+.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~ 127 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence 44443 445554 678888887665
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.54 E-value=5.2e-14 Score=99.80 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCC-------CCCCCC--CCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKL-------FVTDYD--PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE 78 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 78 (115)
..+..++|+++|+.++|||||++++.+.. +..+.. .|.. .....+.+++ ..+.+|||||+.+|.....
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITID-IGFSAFKLEN--YRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETT--EEEEECCCSSHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEe-cceEEEEECC--EEEEEEECCChHHHHHHHH
Confidence 45678999999999999999999999766 111111 1111 1111223344 5788999999999998888
Q ss_pred HHhhcCCEEEEEEeCCC---HHHHHHHH
Q psy9154 79 QYMRKGDGFLLVYSVTD---QQSYENIK 103 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~---~~s~~~~~ 103 (115)
.++..+|++|+|+|+++ +++++.+.
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l~ 119 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHML 119 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHHH
Confidence 99999999999999998 66766654
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.53 E-value=6.8e-15 Score=103.80 Aligned_cols=96 Identities=29% Similarity=0.301 Sum_probs=61.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHH--------HHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFV--TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMRE--------QYM 81 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~--------~~~ 81 (115)
.+||+++|.+|||||||++++.+..+. .....+..+.....+.+++. .+.+|||+|..++..... .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999986543 33344444444445566665 468999999866543322 257
Q ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 82 RKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 82 ~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
..+|++++|+|.+++.+... ..|++.+.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~ 329 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK 329 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc
Confidence 78999999999999766554 45665543
No 150
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=5.6e-14 Score=96.35 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=63.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCe---------------EEEEEEEeCCCccchh--
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDV---------------MCILDVLDTAGQEEFS-- 74 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~~~-- 74 (115)
++|+++|.++||||||++++.+..+.. +++.+..+.....+.+.+. ...+++||+||..++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 789999999999999999999876432 2221111111112233331 2468999999987653
Q ss_pred --hh---HHHHhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHH
Q psy9154 75 --AM---REQYMRKGDGFLLVYSVTDQ----------QSYENIKHFYTQIL 110 (115)
Q Consensus 75 --~~---~~~~~~~~~~~il~~d~~~~----------~s~~~~~~~~~~i~ 110 (115)
.+ ...+++.+|++++|+|+++. +.++.+..+..++.
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~ 133 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELA 133 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHH
Confidence 22 33468899999999999872 45666666666553
No 151
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=1e-13 Score=94.88 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=70.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchh---------hhHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS---------AMREQ 79 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------~~~~~ 79 (115)
...++|+++|.+|||||||++++.+..+.. ....+........+... ...+.+|||+|..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999876432 12222222222233333 3468899999975421 11122
Q ss_pred HhhcCCEEEEEEeCCCHH--HHHHHHHHHHHHHhh
Q psy9154 80 YMRKGDGFLLVYSVTDQQ--SYENIKHFYTQILRV 112 (115)
Q Consensus 80 ~~~~~~~~il~~d~~~~~--s~~~~~~~~~~i~~~ 112 (115)
+...+|++++|+|++++. +++....|+.++.+.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~ 277 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh
Confidence 345699999999999987 788889999988764
No 152
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.53 E-value=7.8e-14 Score=100.99 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=67.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC--CCCC-----CCCC------Ccc-eeEE--EEEEe---CCeEEEEEEEeCCCcc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK--LFVT-----DYDP------TIE-DSYL--QHTEV---DDVMCILDVLDTAGQE 71 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~-----~~~~------~~~-~~~~--~~~~~---~~~~~~l~~~d~~g~~ 71 (115)
...+|+++|+.++|||||+++++.. .+.. .... +.+ .... ..+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3579999999999999999999862 1111 0000 011 1111 11122 4567899999999999
Q ss_pred chhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
+|......+++.+|++|+|+|+++..++.....|...+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~ 121 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME 121 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999877888888876553
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=1.9e-13 Score=95.03 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=65.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC---CCCCCCCC--CcceeE-EEEEEe-------------C--C----eEEEEEE
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK---LFVTDYDP--TIEDSY-LQHTEV-------------D--D----VMCILDV 64 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~---~~~~~~~~--~~~~~~-~~~~~~-------------~--~----~~~~l~~ 64 (115)
...++|+++|+.++|||||++++.+. .+..+..+ |....+ ...... . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 35799999999999999999999843 23233222 333211 111111 1 1 1368999
Q ss_pred EeCCCccchhhhHHHHhhcCCEEEEEEeCC----CHHHHHHHHHH
Q psy9154 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVT----DQQSYENIKHF 105 (115)
Q Consensus 65 ~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----~~~s~~~~~~~ 105 (115)
|||||+.+|.......+..+|++|+|+|++ .+++++.+..|
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 130 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL 130 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence 999999999877777778889999999999 46777777654
No 154
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.52 E-value=8.4e-14 Score=104.18 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=72.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCC------------CCC------CCCCCcceeE-EEEEE------------eCCe
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKL------------FVT------DYDPTIEDSY-LQHTE------------VDDV 58 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~------------~~~------~~~~~~~~~~-~~~~~------------~~~~ 58 (115)
....||+++|+.++|||||+++++... +.. ....|+.... ..... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998641 110 0011222111 11111 2345
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
.+.+++|||||+.+|......+++.+|++|+|+|+++..++.....|....
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 147 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL 147 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 788999999999999999999999999999999999988888877776543
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.52 E-value=1.5e-13 Score=99.45 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC--CCCCC-----CC----------CCcceeEEEEEEe---CCeEEEEEEEeCCCc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK--LFVTD-----YD----------PTIEDSYLQHTEV---DDVMCILDVLDTAGQ 70 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~-----~~----------~~~~~~~~~~~~~---~~~~~~l~~~d~~g~ 70 (115)
...+|+++|+.++|||||+++++.. .+... .. .|... ....+.+ ++..+.+++|||||+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~-~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKM-QAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCC-CSEEEEEECTTSCEEEEEEECCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeee-eEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4679999999999999999999852 22110 00 01110 0011111 456789999999999
Q ss_pred cchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
.+|......+++.+|++|+|+|+++..+......|.....
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~ 123 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999888888888876553
No 156
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.52 E-value=3.8e-14 Score=104.14 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCCCCCCCCCceeeEEEECCCCCcHHHHHHHHHhC--CCCC------------------CCCCCcceeEEEEEEeCCeEE
Q psy9154 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQK--LFVT------------------DYDPTIEDSYLQHTEVDDVMC 60 (115)
Q Consensus 1 m~~~~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 60 (115)
|+...........+|+++|+.++|||||+++++.. .+.. ....+.... ...+... ..
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~ 77 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DH 77 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--Ce
Confidence 55555556677899999999999999999999842 2110 111111111 1122222 35
Q ss_pred EEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 61 ~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
.+++|||||+.+|......+++.+|++|+|+|.++..++.....|..
T Consensus 78 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~ 124 (691)
T 1dar_A 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 124 (691)
T ss_dssp EEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred EEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH
Confidence 78999999999999999999999999999999999888887777764
No 157
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.51 E-value=3.6e-13 Score=93.71 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCC---CCCCCCC--CcceeE-EEEEEe-------------C--C----eEEEE
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKL---FVTDYDP--TIEDSY-LQHTEV-------------D--D----VMCIL 62 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~---~~~~~~~--~~~~~~-~~~~~~-------------~--~----~~~~l 62 (115)
.....++|+++|+.++|||||++++.+.. +..+..+ |....+ ...... . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34567999999999999999999998432 2222222 333212 111110 0 1 13689
Q ss_pred EEEeCCCccchhhhHHHHhhcCCEEEEEEeCC----CHHHHHHHHHH
Q psy9154 63 DVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT----DQQSYENIKHF 105 (115)
Q Consensus 63 ~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----~~~s~~~~~~~ 105 (115)
.+|||||+.+|.......+..+|++|+|+|++ .+++.+.+..|
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~ 132 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 132 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence 99999999999888778888999999999998 46677777654
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.51 E-value=9.9e-14 Score=96.36 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhC--------CCCCCC--C-----CCcc-eeEEEEEEeCCeEEEEEEEeCCCcc
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQK--------LFVTDY--D-----PTIE-DSYLQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~--------~~~~~~--~-----~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
.....+||+++|++++|||||++++.+. .+.... . .+.+ ........+......+.+|||||+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999873 221100 0 0011 0011222333334568899999999
Q ss_pred chhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+|......++..+|++|+|+|+++... ....+|+..+..
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~ 125 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ 125 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH
Confidence 999988899999999999999998643 344566655544
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=1.8e-13 Score=95.85 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=64.8
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCC---CCCC---------CCCCcceeE--------------------EEEEEeCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKL---FVTD---------YDPTIEDSY--------------------LQHTEVDD 57 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~---~~~~---------~~~~~~~~~--------------------~~~~~~~~ 57 (115)
...+||+++|+.++|||||++++++.. +... ...+.+..+ ........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 446999999999999999999998653 1110 011111000 00111222
Q ss_pred eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Q psy9154 58 VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109 (115)
Q Consensus 58 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i 109 (115)
....+.+|||||+.+|......++..+|++|+|+|+++... ....+|+..+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~ 152 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA 152 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH
Confidence 34578899999999999888889999999999999998532 2333444433
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=99.24 Aligned_cols=100 Identities=24% Similarity=0.422 Sum_probs=56.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC-CCCCCCC--------CCcc-eeEEEEEEeCCeEEEEEEEeCCCc-------cc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK-LFVTDYD--------PTIE-DSYLQHTEVDDVMCILDVLDTAGQ-------EE 72 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~l~~~d~~g~-------~~ 72 (115)
...++|+++|++|+|||||++++... .+...+. ++.. ......+..++..+.+.+|||+|. ..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45789999999999999999997653 3433221 2333 222222344566778999999998 66
Q ss_pred hhhhHH-------HHhhcCCEE-----------EEEEeCCC-HHHHHHHH-HHHHHH
Q psy9154 73 FSAMRE-------QYMRKGDGF-----------LLVYSVTD-QQSYENIK-HFYTQI 109 (115)
Q Consensus 73 ~~~~~~-------~~~~~~~~~-----------il~~d~~~-~~s~~~~~-~~~~~i 109 (115)
+..+.. .|++.++++ +++|++++ ..++..+. .|++.+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 767766 777766554 47777776 55666664 455543
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.50 E-value=7.1e-15 Score=106.36 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=68.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCC----CCCcceeEEEEE-------------EeCCeEEEEEEEeCCCccch
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDY----DPTIEDSYLQHT-------------EVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~l~~~d~~g~~~~ 73 (115)
+..+|+++|+.++|||||++++.+..+.... .++.+..+.... ..+.....+.||||||+.+|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999876554321 223332221110 00011225899999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCC---HHHHHHHHH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTD---QQSYENIKH 104 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~---~~s~~~~~~ 104 (115)
..++..+++.+|++|+|+|+++ +++++.+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 9988888999999999999999 888887764
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=1.7e-13 Score=96.10 Aligned_cols=90 Identities=24% Similarity=0.269 Sum_probs=60.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCC--CCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhh-----------
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAM----------- 76 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------- 76 (115)
...+||+++|++|||||||++++.+... ....+.+..+.....+.+++. .+.+|||+|..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 3468999999999999999999998765 233333333444455666776 4679999997543322
Q ss_pred H-HHHhhcCCEEEEEEeCCCHHHHHH
Q psy9154 77 R-EQYMRKGDGFLLVYSVTDQQSYEN 101 (115)
Q Consensus 77 ~-~~~~~~~~~~il~~d~~~~~s~~~ 101 (115)
. ..+++.+|++++++|+++..+...
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~ 281 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQD 281 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence 1 347788999999999998665544
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.48 E-value=3.8e-16 Score=111.71 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=67.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
...+|+++|++++|||||++++.+..+.....++.. +.....+... ....+.||||||+..|..++..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 357899999999999999999997766544333333 2112222221 11257899999999999999999999999999
Q ss_pred EEeCCCHHHHHHHH
Q psy9154 90 VYSVTDQQSYENIK 103 (115)
Q Consensus 90 ~~d~~~~~s~~~~~ 103 (115)
|+|+++........
T Consensus 82 VVDa~dg~~~qt~e 95 (537)
T 3izy_P 82 VVAADDGVMKQTVE 95 (537)
T ss_dssp ECBSSSCCCHHHHH
T ss_pred EEECCCCccHHHHH
Confidence 99999955444433
No 164
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=2.3e-13 Score=94.47 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCC-----cceeEEE-E---------------EEeCC-eEEEEEEEeCCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPT-----IEDSYLQ-H---------------TEVDD-VMCILDVLDTAG 69 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~-----~~~~~~~-~---------------~~~~~-~~~~l~~~d~~g 69 (115)
+||+++|.++||||||++++.+.... ..++.+ .+..+.. . ..+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 122211 1111110 0 01122 246799999999
Q ss_pred ccc----hhhhHHH---HhhcCCEEEEEEeCCCH-----------HHHHHHHHHHHHHHh
Q psy9154 70 QEE----FSAMREQ---YMRKGDGFLLVYSVTDQ-----------QSYENIKHFYTQILR 111 (115)
Q Consensus 70 ~~~----~~~~~~~---~~~~~~~~il~~d~~~~-----------~s~~~~~~~~~~i~~ 111 (115)
..+ ...+... +++.+|++++|+|+++. +.++.+..|..++..
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~ 140 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDY 140 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHH
Confidence 754 2333333 46889999999999886 567777666666543
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=8.5e-14 Score=88.21 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=56.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccc----------hhhhHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEE----------FSAMREQ 79 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~~~ 79 (115)
...+|+++|++|||||||++++.+..+.....++.+... .....+++ .+.+||++|... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 357899999999999999999998775444455555322 22233333 477999999742 3333444
Q ss_pred Hh---hcCCEEEEEEeCCCHHHHH--HHHHHHH
Q psy9154 80 YM---RKGDGFLLVYSVTDQQSYE--NIKHFYT 107 (115)
Q Consensus 80 ~~---~~~~~~il~~d~~~~~s~~--~~~~~~~ 107 (115)
++ ..++++++++|++++.++. .+..|+.
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~ 134 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV 134 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH
Confidence 55 4689999999999865543 3444543
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.47 E-value=1.4e-13 Score=95.46 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=60.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCC-------CCCC--CC-----CCccee-EEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKL-------FVTD--YD-----PTIEDS-YLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~-------~~~~--~~-----~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
.+||+++|+.++|||||++++.+.. +... .. ...+.. ......+......+.+|||||+.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 6899999999999999999998631 1110 00 001100 0111223333457889999999999888
Q ss_pred HHHHhhcCCEEEEEEeCCCHH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQ 97 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~ 97 (115)
...+++.+|++|+|+|+++..
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~ 103 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGP 103 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCS
T ss_pred HHhhHhhCCEEEEEEECCCCC
Confidence 888999999999999999843
No 167
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=8.1e-14 Score=100.16 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC---CCCCCCcceeEEEEEEeC-----------------------------
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV---TDYDPTIEDSYLQHTEVD----------------------------- 56 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------------------------- 56 (115)
.....+|+++|.+|||||||++++++..+. ....++... ...+..+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~--~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC--FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS--EEEEECCSSSEEECCC------------------CC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce--EEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 345789999999999999999999998764 111111110 0000000
Q ss_pred --CeE---------EEEEEEeCCCccc-----------hhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Q psy9154 57 --DVM---------CILDVLDTAGQEE-----------FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111 (115)
Q Consensus 57 --~~~---------~~l~~~d~~g~~~-----------~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~ 111 (115)
+.. ..+.||||||... +......++..+|++|+|+|.++....+....|++.+.+
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG 216 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence 000 2578999999765 556777789999999999999886556666777777654
No 168
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.47 E-value=3.4e-13 Score=92.34 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=49.3
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhh
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD----------QQSYENIKHFYTQILRV 112 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----------~~s~~~~~~~~~~i~~~ 112 (115)
.+.+++||++|++.++.++..|+++++++|+|||+++ ..++++...|++.+.++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999 56799999999988764
No 169
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=95.60 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=50.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCC-CcceeEEEEEEeCCe---------------EEEEEEEeCCCccchh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDP-TIEDSYLQHTEVDDV---------------MCILDVLDTAGQEEFS 74 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~~~ 74 (115)
..++|+++|.+|||||||++++.+..+.....+ +..+.....+.+.+. ...+++||+||..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 458999999999999999999998765322111 111222222333221 2358999999987654
Q ss_pred h-------hHHHHhhcCCEEEEEEeCCCHHHHHH
Q psy9154 75 A-------MREQYMRKGDGFLLVYSVTDQQSYEN 101 (115)
Q Consensus 75 ~-------~~~~~~~~~~~~il~~d~~~~~s~~~ 101 (115)
+ ....+++.+|++++|+|+++.+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 3 45567899999999999987666544
No 170
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.46 E-value=1.1e-12 Score=88.98 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=47.5
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhh
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT----------DQQSYENIKHFYTQILRV 112 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~~~~i~~~ 112 (115)
.+.+++||++||++++.++..||++++++|+|||++ +..++++...|++.+.+.
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 367899999999999999999999999999999665 677888888888888764
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.46 E-value=3e-13 Score=95.34 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=62.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC--CCCCC-------------------------------CCCCcceeEEEEEEeC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK--LFVTD-------------------------------YDPTIEDSYLQHTEVD 56 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~ 56 (115)
...++|+++|++++|||||++++++. .+... ...+....+ . .+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~--~~~ 81 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-W--KFE 81 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-E--EEE
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-E--EEe
Confidence 45799999999999999999999864 22110 111222111 1 222
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.....+.||||||+.+|......++..+|++|+|+|+++.
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence 3345799999999999999999999999999999999986
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.45 E-value=5.9e-13 Score=88.58 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCC------CCCc-----------------------cee----------
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY------DPTI-----------------------EDS---------- 48 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~------~~~~-----------------------~~~---------- 48 (115)
......+|+++|+++||||||++++++..+.+.. .++. .+.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999998875321 1110 000
Q ss_pred -----------EEEEEEe-CCeEEEEEEEeCCCcc-------------chhhhHHHHhhcCCEEE-EEEeCCCHHHHHHH
Q psy9154 49 -----------YLQHTEV-DDVMCILDVLDTAGQE-------------EFSAMREQYMRKGDGFL-LVYSVTDQQSYENI 102 (115)
Q Consensus 49 -----------~~~~~~~-~~~~~~l~~~d~~g~~-------------~~~~~~~~~~~~~~~~i-l~~d~~~~~s~~~~ 102 (115)
....+.+ ......+.+|||||.. .+..+...+++.++.+| +++|.++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000000 0012468999999963 35567778888888777 68999885444443
Q ss_pred HHHHHHH
Q psy9154 103 KHFYTQI 109 (115)
Q Consensus 103 ~~~~~~i 109 (115)
..|++.+
T Consensus 182 ~~~~~~~ 188 (299)
T 2aka_B 182 LKIAKEV 188 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3455544
No 173
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.45 E-value=2.1e-14 Score=102.75 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=67.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCC------------------CCCC------CCCCcceeEEEEEEeCCeEEEEEEEe
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKL------------------FVTD------YDPTIEDSYLQHTEVDDVMCILDVLD 66 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~------------------~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~d 66 (115)
...+|+++|+++||||||+++++... +... ...+.. .....+... ...+++||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~--~~~i~liD 88 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT-TSVMQFPYK--DYLINLLD 88 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS-SSEEEEEET--TEEEEEEC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE-EeEEEEEeC--CEEEEEEE
Confidence 45799999999999999999996211 0000 001111 111222333 45789999
Q ss_pred CCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHH
Q psy9154 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106 (115)
Q Consensus 67 ~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~ 106 (115)
|||+.+|......+++.+|++|+|+|.++..+......|.
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~ 128 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME 128 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999977777766664
No 174
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.45 E-value=6.3e-14 Score=94.03 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=56.3
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcceeEEEEEEeCCeEEEEEEEeCCCcc-chh--------hhHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVT--DYDPTIEDSYLQHTEVDDVMCILDVLDTAGQE-EFS--------AMRE 78 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~--------~~~~ 78 (115)
....+|+++|++|||||||++++++..+.. ....+........+..+ ...+.+|||||.. ... ....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 445689999999999999999999887642 11212222122222333 3468899999987 322 1223
Q ss_pred HHhhcCCEEEEEEeCCC
Q psy9154 79 QYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~ 95 (115)
.+++.+|++++|+|.++
T Consensus 84 ~~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR 100 (301)
T ss_dssp SCCCCEEEEEEEEETTC
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 45678999999999977
No 175
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.6e-13 Score=96.83 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=61.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCC---------------------------------CCCcceeEEEEEEeC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY---------------------------------DPTIEDSYLQHTEVD 56 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 56 (115)
...+||+++|++++|||||++++++....-.. ..|. +.....+.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTi-d~~~~~~~-- 241 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV-SICTSHFS-- 241 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCC-SCSCCEEE--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeE-eeeeEEEe--
Confidence 45789999999999999999999865321110 0011 11111122
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.....+.||||||+.+|......+++.+|++|+|+|+++.
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence 2345788999999999999988999999999999999984
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.44 E-value=1.5e-13 Score=104.88 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=68.2
Q ss_pred CCCCCCceeeEEEECCCCCcHHHHHHHHHhCC-------CCCC-------CCCCccee-EEEEEEeCCeEEEEEEEeCCC
Q psy9154 5 PNNNNITTYKLVVVGDGGVGKSAITIQFFQKL-------FVTD-------YDPTIEDS-YLQHTEVDDVMCILDVLDTAG 69 (115)
Q Consensus 5 ~~~~~~~~~ki~i~G~~~vGKtsl~~~~~~~~-------~~~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~d~~g 69 (115)
+.......+||+++|+.++|||||++++.+.. +... ...+.+.. ....+.+......+.+|||||
T Consensus 289 ~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 289 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp -CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCC
T ss_pred hhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 33455668999999999999999999998631 1100 00111110 011122333445789999999
Q ss_pred ccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
+.+|......+++.+|++|+|+|+++.... ...+|+..+.
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~ 408 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGR 408 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHH
Confidence 999998888899999999999999985322 2334444443
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.43 E-value=6.3e-14 Score=99.00 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=49.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh--CCCCC-------------------------------CCCCCcceeEEEEEEeC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ--KLFVT-------------------------------DYDPTIEDSYLQHTEVD 56 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 56 (115)
...++|+++|+.++|||||+++++. +.+.. ....|.... ...+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFETE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEECS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEecC
Confidence 3468999999999999999999974 22210 001111100 1112223
Q ss_pred CeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 57 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
...+.||||||+.+|......++..+|++|+|+|+++.
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 35788999999999999888899999999999999985
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.43 E-value=1.3e-14 Score=103.07 Aligned_cols=90 Identities=22% Similarity=0.288 Sum_probs=65.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLL 89 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il 89 (115)
+..+|+++|+.++|||||++++....+.....+... +.....+..++. .+.||||||+..|..++..++..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457999999999999999999987655432221111 111112223333 57899999999999988888999999999
Q ss_pred EEeCCC---HHHHHHH
Q psy9154 90 VYSVTD---QQSYENI 102 (115)
Q Consensus 90 ~~d~~~---~~s~~~~ 102 (115)
|+|+++ +++.+.+
T Consensus 81 VVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI 96 (501)
T ss_dssp EEETTTBSCTTTHHHH
T ss_pred EeecccCccHHHHHHH
Confidence 999988 4555544
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.42 E-value=2.3e-13 Score=93.70 Aligned_cols=87 Identities=6% Similarity=0.033 Sum_probs=63.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~ 93 (115)
+|+++|++++|||||++++. ....|.... ...+... ...+.+|||||+.+|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~-~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT-MYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSE-EEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEee-EEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 112222211 1122223 3458999999999998888888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy9154 94 TDQQSYENIKHFYTQILR 111 (115)
Q Consensus 94 ~~~~s~~~~~~~~~~i~~ 111 (115)
++ ..+...++|+..+..
T Consensus 93 ~~-g~~~qt~e~~~~~~~ 109 (370)
T 2elf_A 93 PQ-GLDAHTGECIIALDL 109 (370)
T ss_dssp TT-CCCHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHHH
Confidence 44 345566666665544
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.41 E-value=3.5e-13 Score=96.46 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=60.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhC--CCCCC--------CCCCcce-----------eEEEEEEeCCeEEEEEEEeCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQK--LFVTD--------YDPTIED-----------SYLQHTEVDDVMCILDVLDTA 68 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~l~~~d~~ 68 (115)
....+|+++|++++|||||+++++.. .+... ...+..+ .......+......+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 34689999999999999999999863 11100 0000000 000111122234578999999
Q ss_pred CccchhhhHHHHhhcCCEEEEEEeCCCHH
Q psy9154 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQ 97 (115)
Q Consensus 69 g~~~~~~~~~~~~~~~~~~il~~d~~~~~ 97 (115)
|+.+|......+++.+|++|+|+|.++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~ 119 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGV 119 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccc
Confidence 99999988889999999999999998853
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.41 E-value=4.3e-12 Score=93.50 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhC--CCCCC------------------CCCCcceeEEEEEEe-----CCeEEEEE
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQK--LFVTD------------------YDPTIEDSYLQHTEV-----DDVMCILD 63 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~--~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~l~ 63 (115)
.....+|+++|+.++|||||+.+++.. .+... ...+.... ...+.+ ++..+.++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEE
Confidence 445689999999999999999999753 22110 00111100 111222 23447899
Q ss_pred EEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHH
Q psy9154 64 VLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106 (115)
Q Consensus 64 ~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~ 106 (115)
||||||+.+|......+++.+|++|+++|.++..+......|.
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~ 128 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999976666655554
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=7.2e-13 Score=97.47 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh--CCCCCC------------------CCCCcceeEEEEEEeCCeEEEEEEEeCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ--KLFVTD------------------YDPTIEDSYLQHTEVDDVMCILDVLDTA 68 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 68 (115)
.....+|+++|++++|||||+++++. +.+... ...+... ....+.++ ...+++||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~-~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITS-AATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CC-SEEEEEET--TEEEEEECCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEee-eeEEEEEC--CeeEEEEECc
Confidence 45578999999999999999999985 332110 0011110 01122333 3578999999
Q ss_pred CccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 69 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
|+.++......+++.+|++|+|+|.++..++.....|..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~ 122 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999877777766654
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.40 E-value=1.4e-12 Score=89.32 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=59.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--e-------------eEEE------------------------
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE--D-------------SYLQ------------------------ 51 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~--~-------------~~~~------------------------ 51 (115)
...+|+++|++|||||||++++.+..|.+....... . .+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999887543322211 0 0000
Q ss_pred --------------EEE-eCCeEEEEEEEeCCCccch-------------hhhHHHHhhcCCEEEEEEeCCCH
Q psy9154 52 --------------HTE-VDDVMCILDVLDTAGQEEF-------------SAMREQYMRKGDGFLLVYSVTDQ 96 (115)
Q Consensus 52 --------------~~~-~~~~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~~~~il~~d~~~~ 96 (115)
.+. .......+.+|||||..++ ..+...|+..+|++|+++|.++.
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 000 0111235789999998775 56777899999999999987653
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.40 E-value=3.6e-12 Score=93.77 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCcc-e-e------EEEEEEe-CCe----------------------
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVT-DYDPTIE-D-S------YLQHTEV-DDV---------------------- 58 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~-~~~~~~~-~-~------~~~~~~~-~~~---------------------- 58 (115)
..++|+++|++++|||||++++++..+.+ ...++.. . . ....... ++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999877543 2222221 0 0 0001111 000
Q ss_pred -----------------------E--EEEEEEeCCCccc---hhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 59 -----------------------M--CILDVLDTAGQEE---FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 59 -----------------------~--~~l~~~d~~g~~~---~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
. ..+.+|||||... .......+++.+|++|+|+|.+++.+...+..|.+.+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0 2488999999665 33455678899999999999999888888777765554
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.36 E-value=2.4e-12 Score=86.30 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.3
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV 38 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~ 38 (115)
.....+|+++|+++||||||++++++..+.
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~l 50 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFL 50 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcC
Confidence 355679999999999999999999988763
No 186
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.36 E-value=7.3e-12 Score=86.14 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=54.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCC-CCCCC-CcceeEEEEEEeCC-------------------eEEEEEEEeCCCcc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFV-TDYDP-TIEDSYLQHTEVDD-------------------VMCILDVLDTAGQE 71 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-------------------~~~~l~~~d~~g~~ 71 (115)
++|+++|.+|||||||++++.+.... .+++. |...... ...+.+ ....+++||+||..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999876421 22221 1211111 111111 23468999999987
Q ss_pred chh----hh---HHHHhhcCCEEEEEEeCCC
Q psy9154 72 EFS----AM---REQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 72 ~~~----~~---~~~~~~~~~~~il~~d~~~ 95 (115)
+.. .+ ...+++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 542 22 3346889999999999986
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.36 E-value=4e-12 Score=93.19 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=67.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc----------------c-eeEEEEEEeCCeEEEEEEEeCCCccch
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI----------------E-DSYLQHTEVDDVMCILDVLDTAGQEEF 73 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~l~~~d~~g~~~~ 73 (115)
...+|+++|+.|+|||||+++++..........++ + ........+....+.+++|||||+.+|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 45789999999999999999998543321111110 1 111122223333567899999999999
Q ss_pred hhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 74 ~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
......+++.+|++++++|.++....... .|+..+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~ 123 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAE 123 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHH
Confidence 99999999999999999999875443333 4444443
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.25 E-value=7.6e-13 Score=95.83 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCC--CCCC-----------------------------CCCCcceeEEEEEEeCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKL--FVTD-----------------------------YDPTIEDSYLQHTEVDD 57 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~ 57 (115)
....++|+++|++++|||||+++++... .... ..+... .......+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiT-id~~~~~~~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVT-MDVASTTFES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCee-EEeeEEEEEe
Confidence 3457899999999999999999996421 0000 000000 0001111222
Q ss_pred eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 58 VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 58 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
....+.||||||+.+|......++..+|++|+|+|+++
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 34578999999999998888888899999999999985
No 189
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.21 E-value=2.5e-12 Score=88.09 Aligned_cols=55 Identities=9% Similarity=0.181 Sum_probs=49.4
Q ss_pred eEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhh
Q psy9154 58 VMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVT----------DQQSYENIKHFYTQILRV 112 (115)
Q Consensus 58 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~----------~~~s~~~~~~~~~~i~~~ 112 (115)
..+.+++|||+||++++.++..|+++++++|+|||++ +..+|++...|++.+.+.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~ 245 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 245 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999998 788999999999998765
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.21 E-value=1e-11 Score=83.29 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhC-CCCCCCC--------CCcc-eeEEEEEEeCCeEEEEEEEeCCCc-------c
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQK-LFVTDYD--------PTIE-DSYLQHTEVDDVMCILDVLDTAGQ-------E 71 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~l~~~d~~g~-------~ 71 (115)
....++|+++|++|||||||++++.+. .++..+. ++.. ..........+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 455799999999999999999998764 4443321 1211 111112223445578999999998 5
Q ss_pred chhhhHH
Q psy9154 72 EFSAMRE 78 (115)
Q Consensus 72 ~~~~~~~ 78 (115)
.+..+..
T Consensus 95 ~~~~l~~ 101 (301)
T 2qnr_A 95 CFKTIIS 101 (301)
T ss_dssp -CTTHHH
T ss_pred HHHHHHH
Confidence 5555554
No 191
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.20 E-value=1e-10 Score=81.19 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=50.5
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhh
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD----------QQSYENIKHFYTQILRV 112 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----------~~s~~~~~~~~~~i~~~ 112 (115)
+.+++|||+|++.++.++..||++++++|+|||+++ ..+|+++..|++.+.+.
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999 89999999999998865
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.8e-11 Score=85.42 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=54.9
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHhCCCCCCC--------CCCcc-eeEEEEEEeCCeEEEEEEEeCCCccchh----
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDY--------DPTIE-DSYLQHTEVDDVMCILDVLDTAGQEEFS---- 74 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~---- 74 (115)
.....++|+++|++|||||||++++++..+.... .++.. ..........+....+.+||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3456789999999999999999999987763221 11111 1111111223444578999999976531
Q ss_pred ---hhH-------HH-----------HhhcCCEEEEEEeCCCH-HHHHHHH-HHHHHHH
Q psy9154 75 ---AMR-------EQ-----------YMRKGDGFLLVYSVTDQ-QSYENIK-HFYTQIL 110 (115)
Q Consensus 75 ---~~~-------~~-----------~~~~~~~~il~~d~~~~-~s~~~~~-~~~~~i~ 110 (115)
.+. .. ++.++++.+++|..... .+++.+. .|++.+.
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 111 11 23456666677776654 4566654 5777664
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.18 E-value=1.3e-10 Score=81.04 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccc----hhhhHHH---HhhcCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE----FSAMREQ---YMRKGD 85 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~~---~~~~~~ 85 (115)
.|+++|.+|||||||++++.+.... ..+..+......-.+..++ ...+.+||++|... +..+... ....++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 5789999999999999999876431 1222222222222233333 23578999999642 2222222 345699
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 86 GFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 86 ~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.++.++|++ ...++++..|.+++..+
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~l 263 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAY 263 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHH
Confidence 999999998 66788898998888765
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.1e-09 Score=75.43 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=61.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccch----hh---hHHHHhh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF----SA---MREQYMR 82 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~~---~~~~~~~ 82 (115)
-..+|.++|.|+||||||++++.+.... .+++.+..+...-.+.+.+. .+++.||||-.+- .. ......+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3568999999999999999999976533 34444444555555666665 5779999985422 11 2223567
Q ss_pred cCCEEEEEEeCCCHHH
Q psy9154 83 KGDGFLLVYSVTDQQS 98 (115)
Q Consensus 83 ~~~~~il~~d~~~~~s 98 (115)
.+|++++|.|.+++..
T Consensus 149 ~ad~il~vvD~~~p~~ 164 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH 164 (376)
T ss_dssp HCSEEEEEEETTSHHH
T ss_pred hcCccccccccCccHH
Confidence 8999999999999743
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=2.7e-12 Score=86.13 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHH-HHHHHHH
Q psy9154 27 AITIQFFQKLFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQ-SYENIKH 104 (115)
Q Consensus 27 sl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~-s~~~~~~ 104 (115)
+|+.+++.+.|. ..+.||+++.+...+..++ .+.+||+ ++++..++..+++++|++|+|||+++++ +++.+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 688999999998 8899999977664433333 6889999 8999999999999999999999999987 7999999
Q ss_pred HHHHHHh
Q psy9154 105 FYTQILR 111 (115)
Q Consensus 105 ~~~~i~~ 111 (115)
|+.++.+
T Consensus 107 ~l~~~~~ 113 (301)
T 1u0l_A 107 FLVLAEK 113 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.09 E-value=1.9e-10 Score=78.58 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCC
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFV 38 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~ 38 (115)
....+|+++|+++||||||++++++..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 44679999999999999999999998875
No 197
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.03 E-value=8.2e-10 Score=75.84 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=43.3
Q ss_pred EEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhh
Q psy9154 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD----------QQSYENIKHFYTQILRV 112 (115)
Q Consensus 59 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~----------~~s~~~~~~~~~~i~~~ 112 (115)
.+.+++|||+|+..++.++..|+++++++|+|||+++ ..++++...|+..+.+.
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 3678999999999999999999999999999999999 78999999999998764
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=1.4e-09 Score=75.31 Aligned_cols=84 Identities=24% Similarity=0.231 Sum_probs=56.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCC-CC-CCCCCcceeEEEEEEeCCe---------------EEEEEEEeCCCccc--
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLF-VT-DYDPTIEDSYLQHTEVDDV---------------MCILDVLDTAGQEE-- 72 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~-- 72 (115)
..+|.++|.+|||||||++.+.+... .. +++.+..+...-.+.+.+. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 57899999999999999999998665 22 2222222222223333331 13578999998432
Q ss_pred -----hhhhHHHHhhcCCEEEEEEeCCC
Q psy9154 73 -----FSAMREQYMRKGDGFLLVYSVTD 95 (115)
Q Consensus 73 -----~~~~~~~~~~~~~~~il~~d~~~ 95 (115)
........++.+|+++.++|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22344556789999999999874
No 199
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.94 E-value=2.2e-09 Score=77.22 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=65.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCC------------------CCC------CCCCCcceeEEEEEEeCCeEEEEEEEeC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKL------------------FVT------DYDPTIEDSYLQHTEVDDVMCILDVLDT 67 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~------------------~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 67 (115)
.=+|.|+|+.++|||||..+++... ... +...|+.. ....+.+++ ..++|.||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s-~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTT-SVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTT-TEEEEEETT--EEEEEECC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEee-ceEEEEECC--EEEEEEeC
Confidence 3469999999999999999996210 000 00011110 012223333 57899999
Q ss_pred CCccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHH
Q psy9154 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 68 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~ 108 (115)
||..+|..-....++-+|++|+|+|..+.-.-....-|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a 148 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC 148 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH
Confidence 99999999999999999999999999996666666666444
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.78 E-value=4.9e-08 Score=72.18 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=64.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC--------CCCC--CCCCCcce-------eE--EEEEEeC-----CeEEEEEEEeCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK--------LFVT--DYDPTIED-------SY--LQHTEVD-----DVMCILDVLDTA 68 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~--------~~~~--~~~~~~~~-------~~--~~~~~~~-----~~~~~l~~~d~~ 68 (115)
=+|+|+|+.++|||||..+++.. .... .+.-+..+ .. ...+.+. ...+.+++.|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 37999999999999999999721 1100 00000000 00 1111222 235789999999
Q ss_pred CccchhhhHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy9154 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110 (115)
Q Consensus 69 g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~ 110 (115)
|+.+|..-....++-+|++|+|+|+...-.-....-|-....
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~ 135 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK 135 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH
Confidence 999999999999999999999999998655555555555443
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.71 E-value=5.5e-09 Score=76.40 Aligned_cols=94 Identities=19% Similarity=0.161 Sum_probs=63.5
Q ss_pred eEEEECCCCCcHHHHHHHHHh--CCCCCC----CCCCcce-----------eEEEEEEeCCeEEEEEEEeCCCccchhhh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ--KLFVTD----YDPTIED-----------SYLQHTEVDDVMCILDVLDTAGQEEFSAM 76 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~--~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 76 (115)
+|.|+|+.++|||||..+++. +..... ...+..| .......+......+++.||||+.+|..-
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999972 222110 0001111 01111222333456899999999999999
Q ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHH
Q psy9154 77 REQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107 (115)
Q Consensus 77 ~~~~~~~~~~~il~~d~~~~~s~~~~~~~~~ 107 (115)
....++-+|++|+|+|+.+.-.-....-|..
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~ 114 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHA 114 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHH
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH
Confidence 9999999999999999998544444444443
No 202
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.70 E-value=9e-09 Score=67.80 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=34.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccc
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEE 72 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~ 72 (115)
++++++|.+|||||||++++.+..... ..++.+... ...+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999776532 122222111 11122222 478999999653
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.64 E-value=4.6e-09 Score=71.75 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
....|+++|.+|||||||++++.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999985
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=5.4e-08 Score=64.70 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=35.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCcc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQE 71 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~ 71 (115)
...++++++|.+|||||||++++.+...... ....+.+. ...+..+. .+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3468999999999999999999997653221 11111111 11122222 47899999954
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.57 E-value=3.1e-09 Score=67.88 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=27.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI 45 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~ 45 (115)
...+|+++|++|||||||+++++...+...+.+++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i 71 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACI 71 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 45899999999999999999999876654333333
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.57 E-value=4.4e-08 Score=66.97 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.4
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...+|+++|.+|||||||++++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999963
No 207
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.57 E-value=2e-09 Score=76.01 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=60.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcceeE-EEEEEeCCeEEEEEEEeCCCccc--hhhhH--------H
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSY-LQHTEVDDVMCILDVLDTAGQEE--FSAMR--------E 78 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~--~~~~~--------~ 78 (115)
....+|+++|.+|+||||+++++...-... ..++..-.. .......+......+||..|+.. ..... .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999997542211 111111000 00000111112346899988732 33332 4
Q ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q psy9154 79 QYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112 (115)
Q Consensus 79 ~~~~~~~~~il~~d~~~~~s~~~~~~~~~~i~~~ 112 (115)
.++..+.+.++++|.++. +.+..+.|++.+.+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566678899999999997 677777887776653
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.49 E-value=9.7e-07 Score=65.74 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.2
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhCCCC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFV 38 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~~~~ 38 (115)
.....+|+++|..++|||||++++++..+.
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~L 77 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFL 77 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCS
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 345679999999999999999999998773
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.43 E-value=4.6e-08 Score=62.18 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..+|+++|.+|||||||++++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.42 E-value=6.6e-08 Score=65.79 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=24.4
Q ss_pred EEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHHH
Q psy9154 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS 98 (115)
Q Consensus 60 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s 98 (115)
+.+.|+||||...... .....+|++++++|.+..+.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~ 184 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDD 184 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-----
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHH
Confidence 4688999999654432 34689999999999876544
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.32 E-value=7.3e-07 Score=64.72 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=38.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc----eeEEEEEEe-CCeEEEEEEEeCCCccc
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIE----DSYLQHTEV-DDVMCILDVLDTAGQEE 72 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~l~~~d~~g~~~ 72 (115)
....+|+++|.++||||||++++.+....-....+.. ..+...... ......+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4568899999999999999999998753212222211 111111111 12223577999999553
No 212
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.28 E-value=2.3e-06 Score=55.58 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.......+++.|.+||||||++..+.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34556889999999999999999997
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.12 E-value=1.7e-07 Score=63.79 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-..+.++|.+|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.03 E-value=5.1e-06 Score=57.13 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=43.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC------CCC-CCCCCCcceeEEEEEEeCCeEEEEEEEeCCCccchhh--------hH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK------LFV-TDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSA--------MR 77 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~ 77 (115)
.+++++|.+|||||||++++.+. ... ...+.+... .....+... +.+.||||-..... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999875 111 111112111 122233332 68999999542221 22
Q ss_pred HHHh--hcCCEEEEEEeC
Q psy9154 78 EQYM--RKGDGFLLVYSV 93 (115)
Q Consensus 78 ~~~~--~~~~~~il~~d~ 93 (115)
..++ +..+.++++.+.
T Consensus 238 ~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHHSCSSCCCCEEEEECT
T ss_pred HHHhcccccCceEEEEcC
Confidence 2222 455666666654
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.03 E-value=4.1e-06 Score=57.58 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++++|.+|||||||++++.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 57999999999999999999875
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.96 E-value=4.8e-06 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=22.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999998643
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=2.8e-05 Score=54.45 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=33.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhCCCCCCCCC--CcceeE---EEEEEeCCeEEEEEEEeCCCc
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDP--TIEDSY---LQHTEVDDVMCILDVLDTAGQ 70 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~l~~~d~~g~ 70 (115)
.++++|+|++|+|||||++.+.+..+...... ...... .......+....+.++|++|-
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 36799999999999999999987654321111 111111 111111223346789998864
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.86 E-value=3.3e-05 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
....|+++|.+||||||++.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=1.2e-05 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.750 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=1.2e-05 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|||||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999753
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.78 E-value=1.6e-05 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 222
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.73 E-value=2.1e-05 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
|+|+|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999743
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.71 E-value=3.2e-05 Score=48.84 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.---|+|+|++|||||||++++...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344456899999999999999999853
No 224
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.70 E-value=2.4e-05 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.725 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
++++|++|+|||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999974
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.69 E-value=2.7e-05 Score=48.69 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999998753
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.67 E-value=2.5e-05 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 227
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.67 E-value=2.9e-05 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998764
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=3.3e-05 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|+++|++|||||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 229
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.63 E-value=3.5e-05 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998753
No 230
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.63 E-value=0.00077 Score=47.54 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=53.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC------------------CCCCC---CCCCcceeEE-EE--E-EeCCeEEEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK------------------LFVTD---YDPTIEDSYL-QH--T-EVDDVMCILDVL 65 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~------------------~~~~~---~~~~~~~~~~-~~--~-~~~~~~~~l~~~ 65 (115)
.-.-|.|+|.+++|||+|++++++. .|... ...|.+.... .. . ..++....+.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4566889999999999999999853 23211 1112221111 00 1 113456789999
Q ss_pred eCCCccchhh-------hHHHHhhcCCEEEEEE-eCCCHHHHHHHHHHHHH
Q psy9154 66 DTAGQEEFSA-------MREQYMRKGDGFLLVY-SVTDQQSYENIKHFYTQ 108 (115)
Q Consensus 66 d~~g~~~~~~-------~~~~~~~~~~~~il~~-d~~~~~s~~~~~~~~~~ 108 (115)
||+|...-.. +.....--++.+|+-. ..-+...++.++.+.+.
T Consensus 146 DTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 146 DTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHHHHHHHHHH
Confidence 9999543221 1111222245544443 33446667777765553
No 231
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.62 E-value=3.7e-05 Score=49.03 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998763
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.62 E-value=2.9e-05 Score=47.62 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=16.2
Q ss_pred eEEEECCCCCcHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQ 31 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~ 31 (115)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999994
No 233
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=4.3e-05 Score=46.31 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+||||||+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=4.4e-05 Score=47.98 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-|+++|++||||||+++++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 235
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=8.6e-05 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..+.++|++|+|||||++.+.+-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999874
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.56 E-value=4.9e-05 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-..|.|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988853
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.56 E-value=5.1e-05 Score=45.91 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.3
Q ss_pred eeEEEECCCCCcHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQF 32 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~ 32 (115)
.-|++.|.+|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 238
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=5.5e-05 Score=46.02 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+++|.+|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.55 E-value=5.6e-05 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998654
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.55 E-value=5.6e-05 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.53 E-value=6e-05 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhCC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-.|+++|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999987543
No 242
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.52 E-value=6.6e-05 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
++|+|.|.+|+||||+++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999985
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=6.9e-05 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|+++|.+|+||||+++.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.52 E-value=6.3e-05 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=6.7e-05 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
++|+|.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=6.6e-05 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-|++.|.+|+||||+++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 247
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.50 E-value=7e-05 Score=46.91 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|+++|.+|+||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998863
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.50 E-value=7.4e-05 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-.|+++|++|+||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.49 E-value=7.3e-05 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+|+|.+|+||||+++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 250
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.47 E-value=8.7e-05 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998864
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.47 E-value=9e-05 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+||||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 252
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.47 E-value=8.7e-05 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+|+++|+|||||+|.+.++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.47 E-value=7e-05 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999888753
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=4.8e-05 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|||||||++.+.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999864
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.46 E-value=8.6e-05 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998875
No 256
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.46 E-value=0.00012 Score=45.73 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.......|++.|.+|+||||+++.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344456899999999999999998864
No 257
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=6.7e-05 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.++++|++|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988643
No 258
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=9.9e-05 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|+++|.+|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999853
No 259
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.44 E-value=8.4e-05 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.44 E-value=0.00015 Score=44.21 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|+++|.+|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.41 E-value=0.00013 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.....|+++|.+|+||||+++.+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998853
No 262
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.41 E-value=0.0001 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
--|+++|.+|+||||+++.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.41 E-value=0.0001 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 264
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.40 E-value=0.00013 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.5
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
...|++.|.+|+||||+++.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998875
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.39 E-value=8.5e-05 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999888754
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.39 E-value=0.00012 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
+|+++|.+|+||||+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999885
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.39 E-value=0.0001 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999988754
No 268
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.38 E-value=0.00011 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+|+++|.+|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998865
No 269
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.38 E-value=0.00012 Score=44.59 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.38 E-value=0.00012 Score=46.97 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=18.1
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999887
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=0.00011 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
.++++|++|||||||++.+.+..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999996543
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00016 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|++.|.+|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 273
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.38 E-value=0.00013 Score=46.23 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|.++|.+|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 274
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.37 E-value=0.00011 Score=46.19 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|.++|++|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.37 E-value=0.00011 Score=48.62 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988754
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=0.00023 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
....|++.|.+|+||||+++.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998886
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.36 E-value=0.00012 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 279
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.36 E-value=0.00018 Score=44.19 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-..|+++|.+|+||||+++.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999886
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.35 E-value=0.00011 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998863
No 281
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.35 E-value=0.00012 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+|++.|.+|+||||+++.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.35 E-value=0.00013 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.34 E-value=0.00013 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.34 E-value=0.00012 Score=47.87 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.33 E-value=0.00012 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999988754
No 286
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.33 E-value=0.00017 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+.|.++|.+|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.33 E-value=0.00016 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
--++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.33 E-value=0.00021 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
...|+++|.+|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988643
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.32 E-value=0.00013 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988754
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.32 E-value=0.00014 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00021 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..-.|++.|.+|+||||+++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34569999999999999999886
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.32 E-value=7.9e-05 Score=47.66 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=14.6
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
-++++|++|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 293
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.32 E-value=0.00015 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.32 E-value=0.00011 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.32 E-value=0.00014 Score=47.17 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 296
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.32 E-value=0.00017 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+++|.+|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 297
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.31 E-value=0.00018 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...+|++.|.+|+||||+++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999863
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.31 E-value=0.00013 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.31 E-value=0.00016 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 589999999999999998874
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.31 E-value=0.00016 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 301
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.31 E-value=0.00015 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 302
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.30 E-value=0.00014 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.4
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-+++|+|++|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.30 E-value=0.00016 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-.-|.|+|++|+|||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 346789999999999999998864
No 304
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.30 E-value=0.00015 Score=47.49 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.29 E-value=0.00015 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++|+|++|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.29 E-value=0.00016 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999988754
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.00016 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+|||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998874
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.29 E-value=0.00021 Score=43.22 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.28 E-value=0.00017 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.00027 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.00019 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.26 E-value=0.00022 Score=45.50 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.25 E-value=0.00071 Score=45.22 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=44.8
Q ss_pred CCcceeEEEEEEeCCeEEEEEEEeCCCccchhhhHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHh
Q psy9154 43 PTIEDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQ-SYENIKHFYTQILR 111 (115)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~-s~~~~~~~~~~i~~ 111 (115)
+.+++........++..+...+ ++++..+...++.++|++++|+|+++++ +++.+..|+..+..
T Consensus 44 ~~vGD~V~~~~~~~~~g~I~~i-----~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~ 108 (302)
T 2yv5_A 44 IYAGDYVWGEVVDPNTFAIEEV-----EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY 108 (302)
T ss_dssp CCBTCEEEEEEEETTEEEEEEE-----CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH
T ss_pred CcCceEEEEEEccCCeEEEEee-----CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 6666655443333333322222 5666666667899999999999999986 89999999987754
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.25 E-value=0.00018 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988754
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.25 E-value=0.00018 Score=47.03 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 316
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.25 E-value=0.00019 Score=48.01 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
-++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.25 E-value=0.0002 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-|+|+|++|+|||||++.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.24 E-value=0.00019 Score=45.72 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..|++.|.+||||||+++.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999886
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.00026 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=20.9
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...-|++.|.+|+||||+++++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 320
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.24 E-value=0.00017 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998643
No 321
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.24 E-value=0.00018 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..|+++|.+|+||||+++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.00021 Score=47.16 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
++++|++|+|||+|++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.00015 Score=43.65 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 324
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.23 E-value=0.00017 Score=43.83 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.23 E-value=0.00032 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|++.|.+|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.23 E-value=0.00025 Score=44.13 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..|++.|.+|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999998764
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.22 E-value=0.00039 Score=42.83 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=20.9
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
+....|+++|.+|+||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998853
No 328
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00022 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.21 E-value=0.0001 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+.|+|.+|+|||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.20 E-value=0.00025 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-|++.|.+|+||||+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.19 E-value=0.00025 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|.|+|+.|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.19 E-value=0.00035 Score=43.81 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
...|+++|.+|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998753
No 333
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.18 E-value=0.00027 Score=45.27 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred CCceeeE-EEECCCCCcHHHHHHHHHh
Q psy9154 9 NITTYKL-VVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 9 ~~~~~ki-~i~G~~~vGKtsl~~~~~~ 34 (115)
+....|| +++|+|||||+|.++++..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445555 5689999999999988863
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.18 E-value=0.0003 Score=43.35 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00027 Score=43.42 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+|+||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988853
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=0.00023 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.1
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..|++.|.+|+||||+++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.18 E-value=0.00029 Score=42.69 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|.+|+||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 338
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.00027 Score=44.81 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=20.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 339
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00026 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998753
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.16 E-value=0.00044 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.....|.|+|.+|+|||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999998764
No 341
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.15 E-value=0.00025 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+|+++|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 342
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.15 E-value=0.00019 Score=45.95 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=23.3
Q ss_pred CCccchhhhHHHHhhcCCEEEEEEeCCCHHHHH
Q psy9154 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 68 ~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~ 100 (115)
+||..++.+|..||.++|++|+|+|.+|++-++
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e 142 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE 142 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH
Confidence 488899999999999999999999999975443
No 343
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.00029 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998754
No 344
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.00029 Score=44.48 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378899999999999999873
No 345
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.15 E-value=0.00033 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
....|+|.|.+|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999998754
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.15 E-value=0.00028 Score=43.70 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00028 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-.++++|++||||||+++.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999986
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.14 E-value=0.0003 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.14 E-value=0.00019 Score=48.20 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++|+|++|+|||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 588999999999999988764
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.14 E-value=9.8e-05 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 351
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00031 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.14 E-value=0.00024 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++++|++|+|||||++.+.+-
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 689999999999999988764
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.13 E-value=0.0003 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999988754
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.12 E-value=0.00036 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999864
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.00031 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999988754
No 356
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00034 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 357
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.12 E-value=0.00031 Score=48.20 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999988754
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00033 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
--++++|++||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999998863
No 359
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00041 Score=45.08 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.....|+++|.+|+||||+++.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3346899999999999999998864
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.00024 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=15.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 361
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.11 E-value=0.00027 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988754
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.11 E-value=0.00033 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++++|++|+|||||++.+.+-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 689999999999999988754
No 363
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.09 E-value=0.00034 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 3689999999999999988754
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.09 E-value=0.00039 Score=45.20 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..|.|+|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.09 E-value=0.00035 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3689999999999999988754
No 366
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.09 E-value=0.00036 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
---++++|++|+||||++..+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 367
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.09 E-value=0.00036 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
+.++|++|+|||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 689999999999999888754
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.08 E-value=0.00032 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|++.|.+|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 369
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.0004 Score=43.25 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998875
No 370
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.07 E-value=0.00039 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.00057 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred CceeeEEEECCCCCcHHHHHHHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
...+-|.|+|++|+|||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345779999999999999998885
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.06 E-value=0.00036 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|.++|.+|+||||+++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.06 E-value=0.00044 Score=42.34 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+++|.+|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 374
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.05 E-value=0.00046 Score=47.40 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred CceeeEEEECCCCCcHHHHHHHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
....||+++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998873
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.05 E-value=0.00028 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 3789999999999999988754
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00051 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.0
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..+.|.|.|.+|+||||+++.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 377
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.03 E-value=0.00041 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.03 E-value=0.00036 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|.|+|++|+|||||++.+.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.03 E-value=0.00054 Score=41.48 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998853
No 380
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00044 Score=45.12 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|+++|.+|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 381
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.02 E-value=0.00047 Score=43.30 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 382
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.02 E-value=0.00047 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||+|+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 383
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.01 E-value=0.00088 Score=39.79 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999988754
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=0.00049 Score=43.37 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-|+++|.+|+||||+++.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 385
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.00046 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999753
No 386
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.00 E-value=0.00051 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.00 E-value=0.00044 Score=42.38 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.4
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999853
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.99 E-value=0.00052 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.-|++.|.+|+||||+++++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 389
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.98 E-value=0.0006 Score=43.62 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.-|++.|..|+||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999988753
No 390
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.98 E-value=0.0005 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34789999999999999999875
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.97 E-value=0.00044 Score=45.76 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++++|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999998864
No 392
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.97 E-value=0.00054 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+||||+++++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.96 E-value=0.0005 Score=47.31 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999874
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.95 E-value=0.00044 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999853
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.95 E-value=0.00064 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+|.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.00055 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
--++++|++||||||++..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3688999999999999998863
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.94 E-value=0.00028 Score=48.28 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999988754
No 398
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.93 E-value=0.00048 Score=47.79 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+.++|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999988875
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.93 E-value=0.00054 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998763
No 400
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.92 E-value=0.00052 Score=45.60 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..+++.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567779999999999999874
No 401
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.00059 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999875
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.92 E-value=0.00067 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
.+.|++.|++|+||||+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 403
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.91 E-value=0.0006 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
--++|+|.+|+|||||++.+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 3588999999999999998863
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.91 E-value=0.0005 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998854
No 405
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00088 Score=45.87 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCCceeeEEEECCCCCcHHHHHHHHH
Q psy9154 8 NNITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 8 ~~~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
......||+++|.+++||||+++++.
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHHH
Confidence 45678999999999999999999884
No 406
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.90 E-value=0.00067 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00053 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++|+|++|+|||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998864
No 408
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.88 E-value=0.00085 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.0
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
...+++.|++|+|||++++.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999998664
No 409
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.87 E-value=0.00068 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999998753
No 410
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.87 E-value=0.00041 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHhCCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKLF 37 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~~ 37 (115)
.++++|++|+|||||++.+.+-..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 499999999999999999987643
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.86 E-value=0.0008 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred ceeeEEEECCCCCcHHHHHHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
....|+|.|.+|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 412
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.00077 Score=43.99 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.3
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..-.+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998753
No 413
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00064 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 414
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.0012 Score=41.39 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..+...|.+.|.+|+||||+.+.+..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 44578899999999999999998864
No 415
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.83 E-value=0.00076 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++++|+.|+|||||++.+++-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998763
No 416
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.80 E-value=0.00087 Score=45.51 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.79 E-value=0.00074 Score=43.02 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999988877764
No 418
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0008 Score=42.91 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++++|++|+|||+|+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999888753
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.78 E-value=0.0008 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
++.|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999988865
No 420
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.78 E-value=0.00087 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..-|+++|.+|+||||+++++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999874
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.77 E-value=0.00096 Score=40.03 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=17.2
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~ 33 (115)
.+|+|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999975
No 422
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.77 E-value=0.0016 Score=43.11 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999998864
No 423
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.74 E-value=0.00099 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999754
No 424
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.74 E-value=0.001 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++|.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4889999999999999999754
No 425
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.73 E-value=0.0011 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.7
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998753
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.73 E-value=0.001 Score=45.95 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 427
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.73 E-value=0.00089 Score=43.96 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-++|+|++|+|||+|+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 428
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.73 E-value=0.00094 Score=47.22 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.3
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.-.++++|++|||||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988643
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.72 E-value=0.00068 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHhCC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQKL 36 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~~ 36 (115)
-++++|..|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999653
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.72 E-value=0.0014 Score=42.03 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.4
Q ss_pred CCceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 9 NITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 9 ~~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
......|+++|.+|+||||+++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999988864
No 431
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.71 E-value=0.0011 Score=41.97 Aligned_cols=23 Identities=35% Similarity=0.744 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..|+|+|++|+|||+|+..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.71 E-value=0.0011 Score=44.83 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|+|+|++|||||+|...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 433
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00085 Score=45.21 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q psy9154 15 LVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~ 34 (115)
+++.|++|+|||++++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.71 E-value=0.0011 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998764
No 435
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.00046 Score=46.25 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCCccchhhhHHHHhhcCCEEEEEEeCCCHHHHH
Q psy9154 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYE 100 (115)
Q Consensus 67 ~~g~~~~~~~~~~~~~~~~~~il~~d~~~~~s~~ 100 (115)
.+||...+.++..||.++|++|+|+|.+|++-++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle 227 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE 227 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH
Confidence 4688999999999999999999999999976443
No 436
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0011 Score=44.71 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
+++.|++|+|||++++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 437
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.69 E-value=0.00095 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998743
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.69 E-value=0.0012 Score=44.91 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-|+|+|+.|||||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 439
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.69 E-value=0.0011 Score=47.15 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-+.|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998864
No 440
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.69 E-value=0.00094 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+||||+++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998754
No 441
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.00093 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 442
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0012 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988643
No 443
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.68 E-value=0.0012 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-|+|.|++|||||+|+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 444
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.0013 Score=44.00 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-.+++.|++|+|||.|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988864
No 445
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.66 E-value=0.00073 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=16.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.-|.|.|.+|+||||+++.+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 446
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.66 E-value=0.0015 Score=42.20 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.1
Q ss_pred CceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+.+++.++|.+|+||||+++++..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998853
No 447
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0013 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|+||+|||.|++.+.+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 448
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.66 E-value=0.0012 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999998643
No 449
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.66 E-value=0.0011 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999753
No 450
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.65 E-value=0.001 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
++.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999988753
No 451
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0013 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|++.|+||+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 452
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.65 E-value=0.0014 Score=40.76 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|.|.|.+|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 453
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.65 E-value=0.0013 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=20.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...+++.|++|+|||++++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.65 E-value=0.00087 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.1
Q ss_pred eeeEEEECCCCCcHHHHHHHHHh
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
...|++.|.+|+||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 455
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.64 E-value=0.0014 Score=42.58 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999998754
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.64 E-value=0.0012 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
No 457
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.64 E-value=0.00051 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999874
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.00055 Score=40.64 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999877643
No 459
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.61 E-value=0.001 Score=44.56 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+++.|++|+|||+|++.+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998865
No 460
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0016 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|+||+|||+|++.+.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999974
No 461
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.58 E-value=0.075 Score=37.66 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=52.6
Q ss_pred ceeeEEEECCCCCcHHHHHHHH---Hh---------------CCCCC---CCCCCcceeE-EEE--EE-eCCeEEEEEEE
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQF---FQ---------------KLFVT---DYDPTIEDSY-LQH--TE-VDDVMCILDVL 65 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~---~~---------------~~~~~---~~~~~~~~~~-~~~--~~-~~~~~~~l~~~ 65 (115)
.-.=|.|+|..++|||.|++.+ .. ..|.- ....|.+... ... +. .++....+-+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 3455669999999999999954 31 23321 1223334221 111 11 25667889999
Q ss_pred eCCCccchhh-------hHHHHhhcCCEEEEEEe-CCCHHHHHHHHHHHH
Q psy9154 66 DTAGQEEFSA-------MREQYMRKGDGFLLVYS-VTDQQSYENIKHFYT 107 (115)
Q Consensus 66 d~~g~~~~~~-------~~~~~~~~~~~~il~~d-~~~~~s~~~~~~~~~ 107 (115)
||.|...... +.....--++.+|+=.. .-+...++.+....+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHHHHH
Confidence 9998543221 12122223455555443 344666777765443
No 462
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0013 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++.|++|+|||++++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 463
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.57 E-value=0.0015 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999988753
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0014 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-+.++|++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999988764
No 465
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.57 E-value=0.0016 Score=44.36 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred ceeeEEEECCCCCcHHHHHHHHHh
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..-.+++.|++|+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 466
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.0014 Score=43.74 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-.++++|.+|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998885
No 467
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.54 E-value=0.0016 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.54 E-value=0.0011 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
No 469
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.54 E-value=0.0017 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.6
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.-.|++.|++|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.53 E-value=0.0018 Score=43.68 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-|+|+|++|||||+|+..+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999999999974
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.53 E-value=0.0019 Score=40.64 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
..|++.|.+|+|||++++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 472
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.53 E-value=0.0016 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0017 Score=47.54 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999988754
No 474
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.0018 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q psy9154 13 YKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~ 33 (115)
--|+++|.+|+||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 358899999999999998886
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.50 E-value=0.0025 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-|+|+|++|||||+|+.++...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 476
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0019 Score=45.03 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|+||+|||.|++.+.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.49 E-value=0.0013 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+.++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999988874
No 478
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.0021 Score=44.08 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.2
Q ss_pred eeeEEEECCCCCcHHHHHHHHH
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
..+|+++|.+|+||||+++.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998764
No 479
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.46 E-value=0.0024 Score=41.19 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.7
Q ss_pred ceeeEEEECCCCCcHHHHHHHHH
Q psy9154 11 TTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 11 ~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
-.+||++.|.+|||||+++-.+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36999999999999999966654
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.46 E-value=0.0021 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.|+|+.|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.45 E-value=0.0023 Score=39.75 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=20.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.-|++.|++|+|||+++..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999999764
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.45 E-value=0.002 Score=44.13 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.2
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy9154 15 LVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~ 33 (115)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999886
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.45 E-value=0.002 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++.|++|+|||+|++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999988743
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.44 E-value=0.0017 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-+.|+|++|+|||+|+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 485
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.44 E-value=0.0013 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 486
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.44 E-value=0.0011 Score=44.49 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+++.|++|+|||++++.+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 499999999999999999875
No 487
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.43 E-value=0.0021 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred eeeEEEECCCCCcHHHHHHHHHhC
Q psy9154 12 TYKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 12 ~~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.-.++|.|++|+|||+|++.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998643
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.43 E-value=0.002 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988764
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.43 E-value=0.0021 Score=40.02 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q psy9154 15 LVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 15 i~i~G~~~vGKtsl~~~~~~~ 35 (115)
++|+|.+++|||+++.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999855
No 490
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.0019 Score=46.54 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|++|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999988754
No 491
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.41 E-value=0.0022 Score=45.59 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.|+++|++|+|||+|++.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999875
No 492
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.40 E-value=0.0011 Score=47.98 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.4
Q ss_pred eEEEECCCCCcHHHHHHHHHh
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~ 34 (115)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999987764
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.39 E-value=0.0022 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+.++|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 494
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.39 E-value=0.0023 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|++|+|||++++++..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 495
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.39 E-value=0.0023 Score=45.78 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHh
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQ 34 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~ 34 (115)
-.|++.|++|+|||+|++.+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3799999999999999999875
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.38 E-value=0.0022 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 497
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.37 E-value=0.0026 Score=40.42 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.0
Q ss_pred CceeeEEEECCCCCcHHHHHHHHH
Q psy9154 10 ITTYKLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 10 ~~~~ki~i~G~~~vGKtsl~~~~~ 33 (115)
+.-.-|++-|.+|+||||+++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 344668999999999999999885
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.37 E-value=0.0023 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHhC
Q psy9154 13 YKLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 13 ~ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
-.|++.|++|+|||+|++.+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 499
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0026 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHhC
Q psy9154 14 KLVVVGDGGVGKSAITIQFFQK 35 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~~~ 35 (115)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3999999999999999988754
No 500
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.0027 Score=40.49 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=17.6
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q psy9154 14 KLVVVGDGGVGKSAITIQFF 33 (115)
Q Consensus 14 ki~i~G~~~vGKtsl~~~~~ 33 (115)
=+++.|++|+|||+|+..++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998875
Done!