RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9154
(115 letters)
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 194 bits (495), Expect = 4e-65
Identities = 84/114 (73%), Positives = 98/114 (85%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI 61
A + N+ TYKLVVVGDGGVGKSA+TIQFFQK+FV DYDPTIEDSYL+HTE+D+ I
Sbjct: 8 TSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI 67
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
LDVLDTAGQEEFSAMREQYMR GDGFL+VYSVTD+ S+E++ F+ ILRVKD+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 193 bits (493), Expect = 1e-64
Identities = 54/117 (46%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Query: 1 MA--KAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDV 58
MA K N++ +K+++VG GGVGKSA+T+QF FV DY+PT DSY + +D
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+D+LDTAGQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 117
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 190 bits (486), Expect = 7e-64
Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 4/115 (3%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
M P+ T+KLVVVG GGVGKSA+TIQF Q FV+DYDPTIEDSY + VD +
Sbjct: 2 MDPPPSE----THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA 57
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
LD+LDTAGQEEF AMREQYMR G GFLLV+++ D+QS+ + +TQILRVKD+
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR 112
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 189 bits (484), Expect = 9e-64
Identities = 55/106 (51%), Positives = 78/106 (73%)
Query: 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+ YK+VV+G GGVGKSA+T+QF F+ YDPTIED Y + EVD +L++LDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
E+F++MR+ Y++ G GF+LVYS+ +QQS+++IK QI+RVK
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 190 bits (485), Expect = 1e-63
Identities = 51/114 (44%), Positives = 77/114 (67%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI 61
+ N++ +K+++VG GGVGKSA+T+QF FV DY+PT DSY + +D
Sbjct: 8 GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ 67
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+D+LDTAGQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 121
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 189 bits (482), Expect = 2e-63
Identities = 63/106 (59%), Positives = 81/106 (76%)
Query: 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+T YKLVVVG GGVGKSA+TIQ Q FV + DPTIEDSY + +D C+LD+LDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
QEE+SAMR+QYMR G+GFL V+++ + +S+E+I + QI RVKD
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 190 bits (484), Expect = 2e-63
Identities = 63/110 (57%), Positives = 81/110 (73%)
Query: 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVL 65
+T YKLVVVG GGVGKSA+TIQ Q FV +YDPTIEDSY + +D C+LD+L
Sbjct: 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL 74
Query: 66 DTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
DTAGQEE+SAMR+QYMR G+GFL V+++ + +S+ +I + QI RVKD
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS 124
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 189 bits (483), Expect = 2e-63
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
T YKLVVVG GVGKSA+TIQ Q FV +YDPTIEDSY + +D C+LD+LDTAGQ
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
EE+SAMR+QYMR G+GFL V+++ + +S+E+I H+ QI RVKD
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 188 bits (480), Expect = 4e-63
Identities = 61/106 (57%), Positives = 80/106 (75%)
Query: 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
+ YKLVV+G GGVGKSA+T+QF Q +FV YDPTIEDSY + EVD C+L++LDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
E+F+AMR+ YM+ G GF LVYS+T Q ++ +++ QILRVKD
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 188 bits (480), Expect = 4e-63
Identities = 50/107 (46%), Positives = 75/107 (70%)
Query: 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
++ +K+++VG GGVGKSA+T+QF FV DY+PT DSY + +D +D+LDTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
GQE+++A+R+ Y R G+GFL V+S+T+ +S+ F QILRVK+
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 188 bits (480), Expect = 5e-63
Identities = 41/103 (39%), Positives = 66/103 (64%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
K+ ++G VGKS++TIQF + FV YDPTIE+++ + V+ L ++DTAGQ+E
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+S + Y +G++LVYSVT +S+E IK + ++L + K
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 188 bits (480), Expect = 9e-63
Identities = 43/103 (41%), Positives = 63/103 (61%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
Y++VV G GGVGKS++ ++F + F Y PTIED+Y Q D +C L + DT G +
Sbjct: 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ 68
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
F AM+ + KG F+LV+SVT +QS E + Y I+++K
Sbjct: 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS 111
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 187 bits (477), Expect = 1e-62
Identities = 43/103 (41%), Positives = 62/103 (60%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
Y++ V G GGVGKS++ ++F + F Y PT+ED+Y Q D +C L + DT G +
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
F AM+ + KG F+LVYS+T +QS E +K Y QI +K
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD 106
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 185 bits (472), Expect = 2e-61
Identities = 34/103 (33%), Positives = 60/103 (58%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
K+V++G VGK+++ QF + F YDPT+E++Y + + L ++DTAGQ+E
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+S + ++ G++LVYSVT S++ I+ Y ++ K
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK 127
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 183 bits (467), Expect = 3e-61
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
+ YK++++G GVGKSA+ F + +Y + VD L V D Q
Sbjct: 1 SVYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+ + M GD +++VYSVTD+ S+E Q+ R +
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT 104
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 181 bits (462), Expect = 4e-60
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
KL + G GVGKSA+ ++F K F+ +YDPT+E +Y +DD + +++LDTAGQE+
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
RE +MR G+GF+LVY +TD+ S+E + + +K
Sbjct: 89 T-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP 130
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 178 bits (454), Expect = 4e-59
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
++ Y++V++GD GVGK+++ F K ++ ED Y + VD L V+DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 69 GQEEF--SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
E+ S +E ++ G +++VYS+ D+ S+E+ Q+ R
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA 109
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 175 bits (446), Expect = 1e-57
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-EDSYLQHTEVDDVMCILDVLDTAGQE 71
+K+++VG+ GVGKS + F + ++P ED+Y + VD L V D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 72 EFSA-MREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+ +R+ ++ GD FL+V+SVTD++S+ + ++ +
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 174 bits (444), Expect = 2e-57
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
L ++G G GKSA+T++F K F+++YDP +ED+Y VD L V+DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI-LRVKD 114
E+Y+ FL+VYSV +QS+++ + + L K+
Sbjct: 82 PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE 123
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 173 bits (440), Expect = 5e-57
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPT-IEDSYLQHTEVDDVMCILDVLDTAGQE 71
+K+++VG+ GVGKS + F ++ ED+Y + VD L V D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 72 EFSA-MREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+ +++ ++ GD FL+V+SVTD++S+ + ++ +
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 106
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 167 bits (424), Expect = 5e-54
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQF--FQKLFVTDYDPTIEDSYLQHTEVDDVM 59
+ + + T Y++V++G+ GVGKS + F +D + ED+Y + VD
Sbjct: 27 SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 60 C---ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+LD+ + G+ E+ + + M+ GD +L+VYS+TD+ S+E Q+ R +
Sbjct: 87 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 162 bits (413), Expect = 1e-52
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 10 ITTYKLVVVGDGGVGKSAITIQF--FQKLFVTDYDPTIEDSYLQHTEVDDVMC---ILDV 64
+T Y++V++G+ GVGKS + F +D + ED+Y + VD +LD+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+ G+ E+ + + M+ GD +L+VYS+TD+ S+E Q+ R +
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 111
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 158 bits (401), Expect = 6e-51
Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
K+ +VG+ GKSA+ ++ +V + P + + VD +L + D G E
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
Q+ D + V+S+ D+ S++ + +++ ++ ++
Sbjct: 80 L-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA 117
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 156 bits (396), Expect = 3e-50
Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
+I +L V+GD GKS++ +F + + T + Y + VD ++ + +
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREE 61
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
AG + ++ D + V+S+ D+ S++ + + Q+ ++ +
Sbjct: 62 AGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE 104
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 139 bits (353), Expect = 2e-43
Identities = 39/104 (37%), Positives = 58/104 (55%)
Query: 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
+ K V VGDG VGK+ + I + F TDY PT+ D++ + VD + L + DT
Sbjct: 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
AGQE++S +R R D F+L +S+ + SYEN+ + LR
Sbjct: 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 113 bits (285), Expect = 3e-33
Identities = 34/112 (30%), Positives = 53/112 (47%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI 61
K V+VGDG VGK+++ + + + T+Y PT D++ VD
Sbjct: 10 RGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR 69
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVK 113
L + DTAGQ+EF +R D FLL +SV S++N+ + +R
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 109 bits (273), Expect = 2e-31
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
MA P + K VVVGDG VGK+ + + + F +Y PT+ D Y V
Sbjct: 10 MAHGPGALML---KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQY 66
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+L + DTAGQE++ +R D FL+ +SV + S++N+K
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKE 110
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 107 bits (269), Expect = 5e-31
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDT 67
+ K V VGDG VGK+ + I + F TDY PT+ D++ + V+ L + DT
Sbjct: 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 63
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
AGQE+++ +R R D F+L +S+ + SYEN+
Sbjct: 64 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 104 bits (262), Expect = 9e-30
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI 61
+ ++ KLVVVGDG GK+ + I F + F Y PT+ ++Y+ EVD
Sbjct: 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVE 74
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
L + DTAGQE++ +R D L+ +SV S ENI
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 103 bits (259), Expect = 2e-29
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI 61
N K+VVVGDG VGK+ + + F + T Y PT+ +++ + + I
Sbjct: 13 GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI 72
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
L + DTAGQEE+ +R D LL ++V ++ S++NI
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 104 bits (260), Expect = 2e-29
Identities = 35/111 (31%), Positives = 55/111 (49%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
K VVVGDG VGK+ + I + F +Y PT+ D+Y + VD
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
L + DTAGQE++ +R + D FL+ +S+ S+EN++ + +R
Sbjct: 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 99.8 bits (249), Expect = 1e-27
Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
MA + + K+V+VGDGG GK+++ + F F Y PT+ + Y+ + +V
Sbjct: 23 MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPV 82
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
L + DTAGQ+++ +R + LL + VT S++NI +
Sbjct: 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 98.5 bits (246), Expect = 3e-27
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVM 59
MA A +KLV+VGDGG GK+ + F Y T+ +
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+V DTAGQE+F +R+ Y + ++++ VT + +Y+N+ +++ ++RV +
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE 118
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 96.2 bits (240), Expect = 3e-26
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 4 APNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI--EDSYLQHTEVDDVMCI 61
TYK+ ++GDGGVGK+ + F +Y+ T+ + + + +
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRV 112
+V DTAGQE+ + +++ Y G +L + VT + + +N+ + + V
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV 113
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 93.6 bits (233), Expect = 1e-25
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
K+VVVGD GK+A+ F + F +Y PT+ ++Y E+D L + DT+G +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+R D L+ + ++ ++ +++
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLK 99
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 92.5 bits (230), Expect = 5e-25
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
KLV+VGDG GK+ + I F + F Y PT+ ++Y+ EVD L + DTAGQE++
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+R D L+ +S+ S ENI
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 92.1 bits (229), Expect = 8e-25
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
K+VVVGD GK+A+ F + F +Y PT+ ++Y E+D L + DT+G +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 74 SAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+R D L+ + ++ ++ +++
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLK 120
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 92.2 bits (229), Expect = 9e-25
Identities = 22/104 (21%), Positives = 45/104 (43%)
Query: 3 KAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCIL 62
+ KLV+VGD GK+A+ + + Y PT+ ++Y E ++ L
Sbjct: 18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVEL 77
Query: 63 DVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
+ DT+G + +R D LL + ++ ++ ++ +
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW 121
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 87.5 bits (217), Expect = 3e-23
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 9 NITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTA 68
+ K VVVGDG VGK+ + I + F +Y PT+ D+Y + VD L + DTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
GQE++ +R + D L+ +S+ S+EN++
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRA 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 86.9 bits (216), Expect = 6e-23
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
YK+V+ GD VGKS+ ++ + F + T+ + T VD +L + DTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ + Y RK DG LL+Y VT ++S+ NI+ + I
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 86.4 bits (215), Expect = 7e-23
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-EDSYLQHTEVDDVMCI-LDVLDTAGQ 70
K+VV+GDG GK+++T F Q+ F Y TI D +L+ + + + L + D GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
M ++Y+ G LLVY +T+ QS+EN++ +YT + +V +
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE 110
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 86.4 bits (215), Expect = 8e-23
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAG 69
+ +K++++GDGGVGKS++ ++ F T TI +L EVD + + DTAG
Sbjct: 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 65
Query: 70 QEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
QE F ++R + R D LL +SV D QS++N+ ++ + +
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 86.9 bits (216), Expect = 9e-23
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 6 NNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDV 64
+ K++++GD GVGK+++ Q+ K F Y TI +L VDD + + +
Sbjct: 2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
DTAGQE F ++ + R D +LV+ VT +++ + + + L
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 108
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 86.5 bits (215), Expect = 9e-23
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMC 60
P + I K+ ++GD GVGKS+I +F Q F + PTI S++ T + +
Sbjct: 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH 72
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
+ DTAGQE F ++ Y R ++VY +T Q S+ +K
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK 116
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 85.3 bits (212), Expect = 2e-22
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVM 59
M+ N + +KLV +G+ VGK+++ +F F Y TI +L T ++D
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE F ++ Y+R ++VY +T+ S+ + +
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV 112
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 84.1 bits (209), Expect = 4e-22
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
K++++GD GVGKS + ++F + F + TI + T +++ L + DTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G +LVY +TD++++ NIK ++ +
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 84.6 bits (210), Expect = 5e-22
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMC 60
+ + + +TT K++++G+ GVGKS++ ++F F + TI + T VD
Sbjct: 5 SSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA 64
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE F + Y R G +LVY VT + ++ + ++ ++
Sbjct: 65 KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 113
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 84.1 bits (209), Expect = 5e-22
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLD 66
N I +KLV++G+ VGKS++ ++F + F + TI ++L T +DD ++ D
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
TAGQE + ++ Y R ++VY +T+++S+ K+
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 84.2 bits (209), Expect = 7e-22
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++G+ VGK++ ++ F + T+ + T D L + DTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + Y R GFLL+Y + +Q+S+ ++ + TQI
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 83.3 bits (207), Expect = 8e-22
Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
K+VVVG+G VGKS++ ++ + +F DY TI +L+ +V+D L + DTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
EF A+ + Y R +LV+S TD++S+E I + +++
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 105
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 84.2 bits (209), Expect = 9e-22
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K+V++G+ GVGK+ + +F Q LF TI ++ T E++ L + DTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ + Y R + +L Y +T ++S+ + + +I
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 84.2 bits (209), Expect = 9e-22
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++GD GVGKS + ++F + Y TI + T E+D L + DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G ++VY VTDQ+S+ N+K + +I
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 83.8 bits (208), Expect = 9e-22
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++G+ VGK++ ++ F + T+ + T + L + DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + Y R GF+L+Y +T+++S+ ++ + TQI
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 83.8 bits (208), Expect = 1e-21
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCI-LDVLDTAGQ 70
K++++GD GVGK+++ ++ + Y TI +L VD + V DTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILR 111
E F ++ + R D +LVY VT+ S+ENIK + + L
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 82.9 bits (206), Expect = 2e-21
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 8 NNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLD 66
+ + K+ ++GD GVGKS+I +F + F + +PTI S++ T + + + + D
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
TAG E F A+ Y R ++VY +T ++++ +K+
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN 99
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 83.5 bits (207), Expect = 2e-21
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
K++++GD GVGKS + ++F + F + TI + T +++ L + DTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G +LVY VTD++++ NIK ++ +
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 82.6 bits (205), Expect = 2e-21
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++GD GVGK+ + +F + F + + TI + T E+D L + DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G +LVY +T+++S++NI+++ I
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 106
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 83.1 bits (206), Expect = 2e-21
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++GD GVGKS + ++F + Y TI + T E+D L + DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G ++VY VTDQ+S+ N+K + +I
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 82.6 bits (205), Expect = 2e-21
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K +++GD GVGKS + +QF K F +D TI + +D L + DTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ Y R G LLVY +T ++++ ++ +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 119
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 83.1 bits (206), Expect = 2e-21
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KLV+VGD VGK+ + +F F TI + T E+ L + DTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + + Y R +G +L Y +T + S+ ++ H+ +
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV 127
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 82.6 bits (205), Expect = 3e-21
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++GD GVGKS++ ++F F Y TI + T E++ L + DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G ++VY VT +S+ N+K + +I
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 82.7 bits (205), Expect = 3e-21
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVM 59
+ + + +K+V++G+ GVGK+ + +F + F D TI + T +
Sbjct: 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAG E + A+ Y R G LLV+ +T Q+Y ++ + ++
Sbjct: 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 82.7 bits (205), Expect = 3e-21
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+++++G GVGK+++ +F F T+ + T E+ L + DTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F+++ Y R G +LVY +T +++++++ + I
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 124
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 81.8 bits (203), Expect = 4e-21
Identities = 30/98 (30%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K+V++G+G VGK+++ +++ + F + T+ S+L + L + DTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F A+ Y R +G +LVY +TD+ S++ +K++ ++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 104
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 82.8 bits (205), Expect = 4e-21
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 1 MAKAPNNNNIT-TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDV 58
M+ + +K+V++GD GVGKS + +F + F D TI + T E++
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ DTAGQE + A+ Y R G L+VY ++ SYEN H+ +++
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 82.8 bits (205), Expect = 4e-21
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 1 MAKAPNNNN-ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDV 58
M+ + N + +KLV +G+ VGK+++ +F F Y TI +L T ++D
Sbjct: 4 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63
Query: 59 MCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ Y+R ++VY +T+ S++ + +
Sbjct: 64 TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV 114
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 82.3 bits (204), Expect = 5e-21
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K++++G+ VGK++ ++ F + T+ + T +D L + DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + Y R GF+L+Y +T+++S+ ++ + TQI
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 106
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 82.3 bits (204), Expect = 5e-21
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+KL+++G+ GVGKS + ++F + DY TI + T E+D L + DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F + Y R G ++VY VTDQ+S+ +K + +I
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 82.3 bits (204), Expect = 5e-21
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K+V++GD GVGKS + +F + F + TI + + +VD + DTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + Y R G LLVY + +YEN++ + ++
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 81.5 bits (202), Expect = 7e-21
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K+V++GD GVGKS + +F + F + TI + + +VD + DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ A+ Y R G LLVY + +YEN++ + ++
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 127
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 81.0 bits (200), Expect = 7e-21
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 10 ITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTA 68
+T+ KLV++G+ VGKS+I ++F F + +PTI ++L +++ ++ DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
GQE F+++ Y R L+VY VT QS+ +H+ ++ K
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK 107
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 81.1 bits (201), Expect = 8e-21
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K +++GD GVGKS + QF +K F+ D TI + EV L + DTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F A+ Y R G L+VY +T + +Y ++ + T
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 113
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 81.1 bits (201), Expect = 9e-21
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K +V+G+ G GKS + QF +K F D + TI + V L + DTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ Y R G LLVY +T +++Y + ++ T
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA 108
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 81.5 bits (202), Expect = 9e-21
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMCILDVLDTAGQE 71
+K +V+G G GKS + QF + F D + TI + V L + DTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 72 EFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
F ++ Y R G LLVY +T +++Y ++ + T
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 81.0 bits (201), Expect = 9e-21
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVM 59
MA A N + KLV++GD G GKS++ ++F + FV + TI ++ T V+D
Sbjct: 3 MAAAGNKS--INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
++ DTAGQE + ++ Y R ++V+ VT+Q S+E K
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 79.9 bits (198), Expect = 3e-20
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 2 AKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT-EVDDVMC 60
+ P + +K++V+GD VGK+ +T +F F + TI + + ++D
Sbjct: 10 SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69
Query: 61 ILDVLDTAGQEEF-SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + DTAGQE F +M + Y R + VY +T+ S+ ++ + +
Sbjct: 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC 119
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 80.1 bits (198), Expect = 5e-20
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-----------EDSYLQHTEVDDVMCI 61
KL+ +GD GVGK+ ++ F + T+ +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAGQE F ++ + R GFLL++ +T QQS+ N++++ +Q+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 78.8 bits (195), Expect = 7e-20
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTD-YDPTIEDSYLQHT-EVDDVMCILDVLDTAGQ 70
+K+++VGD GVGK+ + ++F F+ + T+ + +VD V L + DTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 71 EEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
E F ++ Y R LL+Y VT++ S++NI+ + T+I
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 78.8 bits (195), Expect = 8e-20
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-----------EDSYLQHTEVDDVMCI 61
K + +GD GVGK+++ Q+ F + + T+ +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 62 LDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
L + DTAG E F ++ + R GFLL++ +T++QS+ N++++ +Q+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL 119
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 77.7 bits (192), Expect = 3e-19
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKL--FVTDYDPTIEDSYLQHT-EVDDVMCILDV--LDT 67
K+ VVG+ VGKSA+ F K F+ DY T + + D +++ LDT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 68 AGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIK 103
AG + + QY +LV+ V+ +S+E+ K
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 71.2 bits (175), Expect = 6e-17
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLF--VTDYDPTIEDSYLQHT-EVDDVMCI---LDVLD 66
KL++VG+ G GK+ + Q + + T+ ++ D L+V D
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 67 TAGQEEFSAMREQYMRKGDGFLLVYSVTDQQS-YENIKHFYTQI 109
AG+EEF + +M + +L VY ++ Q+ + +K + I
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 69.1 bits (169), Expect = 6e-16
Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 38/136 (27%)
Query: 12 TYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI-------------------------- 45
+YK V++G+ VGKS+I ++ + F + + TI
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 46 ------------EDSYLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSV 93
+ + + D+ DTAGQE ++++ Y R ++V+ +
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 94 TDQQSYENIKHFYTQI 109
++ + + K + Q+
Sbjct: 127 SNSNTLDRAKTWVNQL 142
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 68.5 bits (167), Expect = 6e-15
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHT------- 53
+K ++ K+ ++GDG GK+++ Q + F T + +
Sbjct: 30 RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGL 89
Query: 54 --EVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQI 109
+ + C+ D GQE A + +M + ++L+ D ++ N ++ I
Sbjct: 90 ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHI 144
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 67.3 bits (164), Expect = 1e-14
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMC 60
A+ + K VVVGDG VGK+ + I + F +Y PT+ D+Y + VD
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203
Query: 61 ILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKH 104
L + DTAG E++ +R + D FL+ +S+ S+ +++
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRA 247
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 64.3 bits (156), Expect = 9e-14
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 31 QFFQKLFVTDYDPTIEDSYLQHTEVDDVMC--ILDVLDTAGQEEFSAMREQYMRKG---- 84
+F + T Y++ + L T ++ M G
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 85 DGFLLVYSVT--DQQSYENIKHFYTQILRVKDK 115
DGFLL V+ +++++ F + + K
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 47.8 bits (114), Expect = 4e-08
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKL----------FVTDYDPTI--EDS 48
M+ N +K+V G G GK+ + K+ T+ + T+ +
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62
Query: 49 YLQHTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFY 106
L EV + GQ ++A R+ +R DG + V + N +
Sbjct: 63 PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMR 120
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 41.5 bits (97), Expect = 1e-05
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCI-LDVLDTAGQEE 72
KL+++G G GKS++ F D ++H+ + + + L++ D GQ+
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 73 F-----SAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
F + ++ + + V+ V + ++I+ F + +++
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 8e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 30 IQFFQKLFVTDYD-PTIED---SYLQHTEVDDVMC----------ILDVLDTAGQEEFSA 75
+ F+ FV ++D ++D S L E+D ++ + L + +E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 76 MREQYMRKGDGFLL-VYSVTDQQSYENIKHFYTQILRV 112
E+ +R FL+ +Q + + Q R+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Score = 33.3 bits (75), Expect = 0.013
Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 15 LVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDS------YLQHTEVDDVMCILDVLDTA 68
+++ G G GK+ + + ++ +L + +L++L
Sbjct: 153 VLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEML--- 202
Query: 69 GQEEFSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
Q+ + + + D +S + +I+ ++L+ K
Sbjct: 203 -QKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKP 242
Score = 29.4 bits (65), Expect = 0.23
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 23/103 (22%)
Query: 29 TIQFFQKLFVTDYDPTIEDSY--LQHTEV-----------DDV---MCILDVLDTAGQEE 72
T ++ + IE S L+ E +L ++ +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKDK 115
+ K L YS+ ++Q E+ + L +K K
Sbjct: 403 DV---MVVVNK----LHKYSLVEKQPKESTISIPSIYLELKVK 438
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 35.3 bits (81), Expect = 0.002
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTD---YDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
+++++G GKS+I F K+ + + T + + + D GQ
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPGQ 79
Query: 71 EEF---SAMREQYMRKGDGFLLVYSVTDQ 96
+F + E R + V D
Sbjct: 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDD 108
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 35.3 bits (81), Expect = 0.002
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 15/111 (13%)
Query: 14 KLVVVGDGGVGKSAI--TIQFFQKLF-VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQ 70
++V+G GGVGKS+ +I +++ ++ + + L+++DT G
Sbjct: 41 TILVMGKGGVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGL 97
Query: 71 EEFSAMREQYMRKG---------DGFLLVYSVTDQQSYENIKHFYTQILRV 112
E + + + D L V + + K I
Sbjct: 98 IEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDS 148
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 33.3 bits (76), Expect = 0.009
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 14 KLVVVGDGGVGKSAI--TIQFFQKLF-VTDYDPTIEDSYLQHTEVDDVMCILDVLDTAG 69
++V+G GGVGKS+ ++ +++ V+ + + + ++++DT G
Sbjct: 38 TVLVLGKGGVGKSSTVNSL-IGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPG 93
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 32.0 bits (72), Expect = 0.032
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 15 LVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEFS 74
++++G GKS+I F + D S ++ L V++ GQ +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLID-LAVMELPGQLNYF 60
Query: 75 AM---REQYMRKGDGFLLVYSVTDQQSYENIKHFYTQIL 110
E+ + LVY + Q Y N I+
Sbjct: 61 EPSYDSERLFKSVGA--LVYVIDSQDEYINAITNLAMII 97
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 30.3 bits (68), Expect = 0.14
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 47 DSYLQHTEVDDVMCILDVLDTAGQE 71
DS + E +++ +L + T +E
Sbjct: 585 DSVFETLEAQEMLWLLQAVMTPERE 609
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.18
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 66 DTAGQEEFSAMREQYMRKGDGFL-LVYSVTDQQ---SYENI-----KHFYTQILRVKD 114
A +E + E + FL V S+ + ++ + F L D
Sbjct: 47 GFAADDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 0.44
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 16 VVVGDGGVGKSAITIQ 31
+V GG GKS + +Q
Sbjct: 34 ALVSPGGAGKSMLALQ 49
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 28.2 bits (63), Expect = 0.47
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 14 KLVVVGDGGVGKSAIT 29
KL V G GGVGK+ +
Sbjct: 2 KLAVAGKGGVGKTTVA 17
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 28.0 bits (63), Expect = 0.50
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 65 LDTAGQEEFSAMREQYMRKGDGFLLVYSVTD---QQSYENIKH 104
LDT G E F+ MR + + D +LV + D Q+ E I H
Sbjct: 60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINH 102
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.7 bits (61), Expect = 0.84
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 7 NNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCIL 62
+N +++VG G GKS I + Q + + E + +
Sbjct: 20 EDN-YRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVN 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.00
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 25 KSAIT-IQFFQKLFVTDYDP------TIE 46
K A+ +Q KL+ D P T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 27.2 bits (60), Expect = 1.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 47 DSYLQHTEVDDVMCILDVLDTAGQE 71
Y + EV + +L V+D Q+
Sbjct: 615 SGYFEAVEVAVALSVLKVIDNPYQD 639
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 26.9 bits (59), Expect = 1.6
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
++++G G +GK + + F+K++ D ++ E + V++ A E
Sbjct: 14 TVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAV 73
Query: 74 SAMREQYMRKGDGFLLVYSVT---DQQSYENIK 103
Q ++ ++ S + D+ E
Sbjct: 74 KEYSLQILKNP-VNYIIISTSAFADEVFRERFF 105
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 26.8 bits (60), Expect = 1.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 16 VVVGDGGVGKSAI 28
++VG+ GVGK+AI
Sbjct: 211 LLVGESGVGKTAI 223
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock
protein, protein binding; 2.75A {Mus musculus}
Length = 320
Score = 26.9 bits (59), Expect = 1.8
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 60 CILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
C +D+ +E E +R D F + S
Sbjct: 11 CAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLT 46
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 2.5
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 11 TTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILD 63
+ ++ VG+ G+GKS LF T ++ ++ L
Sbjct: 41 FCFNILCVGETGLGKST----LMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQ 89
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 26.1 bits (57), Expect = 2.5
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 52 HTEVDDVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLVYSVTD 95
+ + DV + ++ + E + D F V+S
Sbjct: 3 LGSPEFPGRLEDVTVYSLEDLTALASEHTSKNTDTFAAVFSFLS 46
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 65 LDTAGQEEFSAMRE 78
LDT G FSAMR
Sbjct: 57 LDTPGHAAFSAMRA 70
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.9 bits (56), Expect = 3.2
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 11 TTYKLVVVGDGGVGKSA-ITIQFFQKLFVTDYDPTIED---------SYLQHTEVDDVMC 60
+ L+VVG+ G+GKS I F L+ + + E V
Sbjct: 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 61 ILDVLDTAGQEE 72
L V+DT G +
Sbjct: 77 RLTVVDTPGYGD 88
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 26.2 bits (57), Expect = 3.4
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 14 KLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEEF 73
+ V++G G VG++ + + F+K + TI + +V + L + +
Sbjct: 15 RFVILGFGCVGQALMPL-IFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNY 73
Query: 74 SAMREQYMRKGDGFL 88
+ + + D +
Sbjct: 74 LEVIGSTLEENDFLI 88
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase,
phospholipid degradation, virulence factor of human
pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2
PDB: 1aod_A*
Length = 274
Score = 26.1 bits (57), Expect = 3.5
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 3 KAPNNNNITT-----YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDD 57
+ +N I T K++++ + K + + + I+D Y +
Sbjct: 135 RTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTK 194
Query: 58 VMCILDVLDTA 68
I+ A
Sbjct: 195 FKEIVQTAYQA 205
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 5 PNNNNITTYKLVVVGDGGVGKS-AITI 30
N+ N T K+ VVG G +G + + I
Sbjct: 7 ANHENKTVNKITVVGGGELGIACTLAI 33
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 25.8 bits (57), Expect = 4.3
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 29/88 (32%)
Query: 15 LVVVGDGGVGKSAI-------------------TIQFFQKL---FVTDYDPTIEDSYLQH 52
L+V G GGVG A+ T ++ + L V D+ +
Sbjct: 176 LIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAAL 235
Query: 53 T--EVDDVMCILDVLDTAGQEEFSAMRE 78
V T + + + +
Sbjct: 236 GLGAPAFV-----FSTTHTDKHAAEIAD 258
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 25.6 bits (57), Expect = 4.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 16 VVVGDGGVGKSAI 28
V++G+ GVGK+AI
Sbjct: 205 VLIGEPGVGKTAI 217
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome,
initiation of protein synthesis, cryo-eletron
microscopy, translation/RNA complex; 13.80A
{Escherichia coli}
Length = 501
Score = 25.6 bits (57), Expect = 4.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 65 LDTAGQEEFSAMR 77
LDT G F++MR
Sbjct: 56 LDTPGHAAFTSMR 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 25.6 bits (57), Expect = 4.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 16 VVVGDGGVGKSAI 28
V++G+ GVGK+AI
Sbjct: 205 VLIGEPGVGKTAI 217
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.4 bits (55), Expect = 4.7
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 14 KLVVVGDGGVGKSAITIQFF-QKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
+L++VG G GKSA Q+ F + T C ++V+DT
Sbjct: 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82
Query: 73 FSAMREQYMRK 83
+ +
Sbjct: 83 SQVSKTDPGCE 93
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 25.4 bits (55), Expect = 5.0
Identities = 13/114 (11%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 11 TTYKLVVVGDGGVGKS----AITIQFFQK--LFVTDYDPTIEDSYLQHTEVDDVMCILDV 64
+ + V G+ G GKS + ++ T + + + D+
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDL 127
Query: 65 --LDTAGQEEFSAMREQYMRKGDGFLLVYSV----TDQQSYENIKHFYTQILRV 112
+ + + + + + D F+++ + D + I + V
Sbjct: 128 PGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 181
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase;
HET: GDP; 2.00A {Methanothermobacterthermautotrophicus}
SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A*
1g7t_A*
Length = 594
Score = 25.3 bits (56), Expect = 5.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 64 VLDTAGQEEFSAMR 77
+DT G E F+ +R
Sbjct: 74 FIDTPGHEAFTTLR 87
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 25.5 bits (55), Expect = 5.1
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 MAKAPNNNNITTYKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTI 45
M+ + + ++ + G G+GK+ + F F + +
Sbjct: 1 MSTDKTDVKMGVLRIYLDGAYGIGKTT-AAEEFLHHFAITPNRIL 44
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 25.2 bits (55), Expect = 5.6
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 6/18 (33%)
Query: 15 LVVVGDG------GVGKS 26
+VVVGD GVGK+
Sbjct: 177 IVVVGDKKGQVGVGVGKA 194
>3ozb_A Methylthioadenosine phosphorylase;
5'-methylthioinosine,phosphorylase, transferase; HET:
HPA; 2.80A {Pseudomonas aeruginosa}
Length = 259
Score = 25.3 bits (56), Expect = 5.9
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 37 FVTDYDPTIEDSYLQHTEVDDVM 59
V + + E++ +
Sbjct: 220 LVVNPAAGKSAGIITMAEIEQAL 242
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 25.2 bits (55), Expect = 6.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 LVVVGDGGVGKSAITI 30
+ V G GGVGK+ +
Sbjct: 21 IFVGGKGGVGKTTSSC 36
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 24.9 bits (55), Expect = 6.5
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 26/82 (31%)
Query: 14 KLVVVGDGGVGKSAI-----------------TIQFFQKLFVTDYDPTIEDSYLQHTEVD 56
++++VG G V + K V + +
Sbjct: 145 EVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGV---RHLYREPSQVTQKYF 201
Query: 57 DVMCILDVLDTAGQEEFSAMRE 78
+ D + +A+
Sbjct: 202 ------AIFDAVNSQNAAALVP 217
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E
1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E*
1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E*
1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ...
Length = 162
Score = 24.8 bits (55), Expect = 6.8
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
Query: 15 LVVVGDG------GVGKS 26
LVVVGD G GK+
Sbjct: 31 LVVVGDRQGRVGLGFGKA 48
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 24.9 bits (54), Expect = 6.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 17 VVGDGGVGKSAITIQF 32
+ G G GK+ QF
Sbjct: 35 LTGGTGTGKTTFAAQF 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 25.2 bits (55), Expect = 6.9
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 15 LVVVGDGGVGKSAITIQFFQK 35
+ + G G GKS + + +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRD 170
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP;
1.80A {Debaryomyces hansenii}
Length = 348
Score = 24.8 bits (54), Expect = 7.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 LVVVGDGGVGKSAITI 30
+ V G GGVGK+ +
Sbjct: 21 IFVGGKGGVGKTTTSS 36
>1z4r_A General control of amino acid synthesis protein 5-like 2; GCN5,
acetyltransferase, SGC, structural genomics, structural
genomics consortium; HET: ACO; 1.74A {Homo sapiens}
SCOP: d.108.1.1 PDB: 1cm0_B*
Length = 168
Score = 24.9 bits (54), Expect = 7.1
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYT 107
F A+ KG G L+ + + NI +F T
Sbjct: 84 FCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLT 118
>3r8n_E 30S ribosomal protein S5; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_E 3fih_E* 3iy8_E 2wwl_E
3oar_E 3oaq_E 3ofb_E 3ofa_E 3ofp_E 3ofx_E 3ofy_E 3ofo_E
3r8o_E 4a2i_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E
2i2u_E ...
Length = 150
Score = 24.8 bits (55), Expect = 7.2
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
Query: 15 LVVVGDG------GVGKS 26
L VVGDG G GK+
Sbjct: 27 LTVVGDGNGRVGFGYGKA 44
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 25.0 bits (54), Expect = 7.2
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 3 KAPNNNNITTYKLVVVGDGGVGKSAITIQFF-QKLFVTDYDPTIE--DSYLQHTEVDDVM 59
+ P N+ + +V+VG G GKSA +K+F + + + +
Sbjct: 23 QEPRNSQLR---IVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET- 78
Query: 60 CILDVLDTAG-------QEEFSAMREQYMRK----GDGFLLV-----YSVTDQQSYENIK 103
L V+DT G E S + + LLV Y+ + ++ E I
Sbjct: 79 -ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKIL 137
Query: 104 H-FYTQILR 111
F +
Sbjct: 138 KMFGERARS 146
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.2 bits (55), Expect = 7.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 15 LVVVGDGGVGKSAITIQFFQKL 36
L++ G G GK+ +
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAF 1328
>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus}
SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D
Length = 150
Score = 24.4 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
Query: 15 LVVVGDG------GVGKS 26
LVVVGD G GK+
Sbjct: 36 LVVVGDKNGHVGFGTGKA 53
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 24.7 bits (54), Expect = 7.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 17 VVGDGGVGKSAITIQF 32
+ G G GK+ + QF
Sbjct: 28 LSGGPGTGKTIFSQQF 43
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 24.6 bits (54), Expect = 8.6
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 4 APNNNNITTYKLVVVGDGGVGKS-AITI 30
A + + K+ VVG VG + AI++
Sbjct: 13 ATSQEPRSYNKITVVGCDAVGMADAISV 40
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E
3i1q_E 3i1s_E 3i1z_E 3i21_E 3izv_I* 3izw_I* 3kc4_E
3or9_E 3ora_E 3sfs_E* 3uoq_E*
Length = 167
Score = 24.4 bits (54), Expect = 8.6
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 6/18 (33%)
Query: 15 LVVVGDG------GVGKS 26
L VVGDG G GK+
Sbjct: 36 LTVVGDGNGRVGFGYGKA 53
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 24.5 bits (54), Expect = 8.8
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 14/33 (42%)
Query: 10 ITTYK--------------LVVVGDGGVGKSAI 28
+T Y VV+G GG+G I
Sbjct: 156 LTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGI 188
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 24.7 bits (53), Expect = 9.5
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 12 TYKLVVVGDGGVGKSA-ITIQFFQKLFVTDYDPTIE--------DSYLQHTEVDDVMCIL 62
+ L+VVG+ G+GKS I F L+ +Y + + V +L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 63 DVLDTAGQEE 72
++DT G +
Sbjct: 68 TIVDTPGFGD 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 24.5 bits (54), Expect = 9.5
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 13 YKLVVVGDGGVGKSAITIQFFQKLFVTDYDPTIEDSYLQHTEVDDVMCILDVLDTAGQEE 72
+K+++VG GK+ I QF V PTI S ++ +++ + D GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINNTR--FLMWDIGGQES 72
Query: 73 FSAMREQYMRKGDGFLLVYSVTDQQSYENIKHFYTQILRVKD 114
+ Y + ++V TD++ + ++L +D
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 24.6 bits (53), Expect = 9.7
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 18/94 (19%)
Query: 15 LVVVGDGGVGKSAITIQ-----------FFQ-KLFVT---DYDPTIED---SYLQHTEVD 56
L + G G GKS I Q + +++ + D L + +
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 214
Query: 57 DVMCILDVLDTAGQEEFSAMREQYMRKGDGFLLV 90
D + ++ M + L V
Sbjct: 215 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFV 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.386
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,751,192
Number of extensions: 95706
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 167
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)