BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9156
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 90/122 (73%), Gaps = 3/122 (2%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
FQ++ FGFSVSHTTR PRPGE DGK Y+FVTR M+ IAAG+F+EHAEF+ NLYGT
Sbjct: 24 LFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT 83
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
S+ AV AV + CVLD+++QGV+ +K+ +Y+FV+PPS++ LE RLR R TE
Sbjct: 84 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTD---LCPIYIFVQPPSLDVLEQRLRLRNTE 140
Query: 126 TE 127
TE
Sbjct: 141 TE 142
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
F +YPD FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+F+ N YG+
Sbjct: 22 LFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 81
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
+ A+V+ V SGKTC+LDI++QGV+ VK A ++F+ PPS+E+L+ RL GRGTE
Sbjct: 82 TVASVKQVSKSGKTCILDIDMQGVKSVKAI--PELNARFLFIAPPSVEDLKKRLEGRGTE 139
Query: 126 TE 127
TE
Sbjct: 140 TE 141
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
F +YPD FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+F+ N YG+
Sbjct: 21 LFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
+ A+V+ V SGKTC+LDI++QGV+ VK A ++F+ PPS+E+L+ RL GRGTE
Sbjct: 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAI--PELNARFLFIAPPSVEDLKKRLEGRGTE 138
Query: 126 TE 127
TE
Sbjct: 139 TE 140
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
F +YPD FGFSV TTR PR GEV+GK Y+FV+ + + I EF+E A+F+ N YG+
Sbjct: 37 LFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 96
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
+ A+V+ V SGKTC+LDI++QGV+ VK A ++F+ PPS+E+L+ RL GRGTE
Sbjct: 97 TVASVKQVSKSGKTCILDIDMQGVKSVKAI--PELNARFLFIAPPSVEDLKKRLEGRGTE 154
Query: 126 TE 127
TE
Sbjct: 155 TE 156
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 17 SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76
SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHAE N YGTSR A+E V+ +
Sbjct: 36 SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLAT 95
Query: 77 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEXXXXXXXXX 136
G LDI+ QG QQ+++ M A +F+ PPS EL+ RLRGRG ++E
Sbjct: 96 GVDVFLDIDWQGAQQIRQ---KMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQ 152
Query: 137 XXXXMSY 143
MS+
Sbjct: 153 AVAEMSH 159
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Query: 17 SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76
SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHAE N YGTSR A+E V+ +
Sbjct: 48 SVSHTTRQPRPGEVHGEHYFFVNHDEFKEXISRDAFLEHAEVFGNYYGTSREAIEQVLAT 107
Query: 77 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE 127
G LDI+ QG QQ+++ A +F+ PPS EL+ RLRGRG ++E
Sbjct: 108 GVDVFLDIDWQGAQQIRQ---KXPHARSIFILPPSKIELDRRLRGRGQDSE 155
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 9 DYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRA 68
++P RF FS+S TTR R E +G Y+FV + D E ++ G+FLE ++A N YGT ++
Sbjct: 35 EFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKS 94
Query: 69 AVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
+ + GK C+ + + GV+Q+K + G +Y+FVKPPSI+ L RL+ R TE
Sbjct: 95 EYDLAVGEGKICLFEXNINGVKQLKESKHIQDG-IYIFVKPPSIDILLGRLKNRNTE 150
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
++P+ F FSVS TTR R E +G Y+F+ + E+++ +FLE+ +A N YGT
Sbjct: 43 LLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT 102
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
++ + K C+ ++ + GV+Q+K++ + A+Y+F+KPPS + L +RL R TE
Sbjct: 103 LKSEYDKAKEQNKICLFEMNINGVKQLKKS-THIKNALYIFIKPPSTDVLLSRLLTRNTE 161
Query: 126 TE 127
+
Sbjct: 162 NQ 163
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 65
F+D + +S+S TTR R GEVDG Y F TR E I +F+E+AE+ N YGT
Sbjct: 26 IFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGT 85
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
V+ ++ G L+IEV+G +QV++ A+++F+ PPS+E L RL GRGTE
Sbjct: 86 PVQYVKDTMDEGHDVFLEIEVEGAKQVRK---KFPDALFIFLAPPSLEHLRERLVGRGTE 142
Query: 126 TE 127
++
Sbjct: 143 SD 144
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
F+D F +S+S TTR PR GE DG Y+F +R E+ I G+ LE+AE+ N YGT
Sbjct: 29 FKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIKDGKXLEYAEYVGNYYGTP 88
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124
VE + +G L+IEVQG QV++ A +++F+ PP + EL+ R+ GRGT
Sbjct: 89 LEYVEEKLAAGVDIFLEIEVQGAXQVRK---AXPEGIFIFLTPPDLSELKNRIIGRGT 143
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 16 FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY--GTSRAAVEAV 73
FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE L+ GT V A
Sbjct: 52 FSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 111
Query: 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+G ++++++ G + +K+ M AV VF+ PPS ++L+ RL GRGTET
Sbjct: 112 AATGVPVLIEVDLAGARAIKK---TMPEAVTVFLAPPSWQDLQARLIGRGTET 161
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 16 FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY--GTSRAAVEAV 73
FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE L+ GT V A
Sbjct: 49 FSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 108
Query: 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+G ++++++ G + +K+ M AV VF+ PPS ++L+ RL GRGTET
Sbjct: 109 AATGVPVLIEVDLAGARAIKK---TMPEAVTVFLAPPSWQDLQARLIGRGTET 158
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYG 64
++PD+FG V HTTR R EVDG+ YHFVT R ME+ I +F+E ++ +LYG
Sbjct: 123 LISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYG 182
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIE---ELETRL 119
TS +V AV GK C+LD+ +KR A + +F+KP S+E E+ RL
Sbjct: 183 TSVQSVRAVAEKGKHCILDVSGNA---IKRLQIAQLYPISIFIKPKSMENIMEMNKRL 237
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYG 64
+YPD+FG V HTTR R EVDG+ YHFV +R ME I F+E ++ NLYG
Sbjct: 117 LISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG 176
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEEL 115
TS A+V V GK C+LD+ +KR A V VF+KP S++ +
Sbjct: 177 TSVASVREVAEKGKHCILDVSGNA---IKRLQVAQLYPVAVFIKPKSVDSV 224
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 16 FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY--GTSRAAVEAV 73
FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE L+ GT V A
Sbjct: 52 FSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAA 111
Query: 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+G ++++++ G + +K+ M AV VF+ PPS ++L+ RL GRG ET
Sbjct: 112 AATGVPVLIEVDLAGARAIKK---TMPEAVTVFLAPPSWQDLQARLIGRGCET 161
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYG 64
++PD+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYG
Sbjct: 128 LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 187
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEEL 115
TS +V V GK C+LD+ V+R A + +F++P S+E +
Sbjct: 188 TSVQSVREVAEQGKHCILDVSANA---VRRLQAAHLHPIAIFIRPRSLENV 235
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYG 64
++PD+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYG
Sbjct: 122 LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 181
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEEL 115
TS +V V GK C+LD+ V+R A + +F++P S+E +
Sbjct: 182 TSVQSVREVAEQGKHCILDVSANA---VRRLQAAHLHPIAIFIRPRSLENV 229
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYG 64
++PD+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYG
Sbjct: 548 LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG 607
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEEL 115
TS +V V GK C+LD+ V+R A + +F++P S+E +
Sbjct: 608 TSVQSVREVAEQGKHCILDVSANA---VRRLQAAHLHPIAIFIRPRSLENV 655
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 11 PDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAV 70
P++F + V +TTR PR E DGK YHF++ +M I+A EFLE + N++GT V
Sbjct: 44 PEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETV 103
Query: 71 EAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE 127
+ K +LDIE Q ++ V+ A VF+ P +GT+TE
Sbjct: 104 HQIHKQNKIAILDIEPQTLKIVRTAE---LSPFIVFIAP----------TDQGTQTE 147
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 17 SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76
SVS TTR R GE +GK Y+FV R + + GE +EHAE N YG R +E ++
Sbjct: 58 SVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDK 117
Query: 77 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 122
G + +L I+ QG K V +F+ PPS+EEL RL GR
Sbjct: 118 GVSTLLVIDWQGA--FKFMEMMREHVVSIFIMPPSMEELRRRLCGR 161
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 16 FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVIN 75
S+SHTTR RPG+ +G Y F+ + + G FLEHA YGT + V +
Sbjct: 36 ISISHTTRPKRPGDQEGVDYFFIDETRFQAXVKEGAFLEHATIYERHYGTEKDWVLRQLK 95
Query: 76 SGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 122
+G+ +L+I+ QG +Q++ A+ +F+ PPSIE L RL R
Sbjct: 96 AGRDVLLEIDWQGARQIRE---LFPPALSIFILPPSIEALRERLIKR 139
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 10 YPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAA 69
+PDRF + + HTTR P+ E +GK Y+FV+ M + I+ E+LE+ +YGT
Sbjct: 29 HPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLET 88
Query: 70 VEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSI 112
+ + G +LD+E Q ++ ++ A A VF+ P+I
Sbjct: 89 IRKIHEQGLIAILDVEPQALKVLRTAEFA---PFVVFIAAPTI 128
>pdb|3UP6|A Chain A, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1, Sp17169a,
Jcsg 417104) From Bacteroides Ovatus Atcc 8483 At 2.80 A
Resolution
pdb|3UP6|B Chain B, Crystal Structure Of A Hypothetical Protein Bacova_04078
[bacteroides Ovatus Atcc 8483] (Zp_02067074.1, Sp17169a,
Jcsg 417104) From Bacteroides Ovatus Atcc 8483 At 2.80 A
Resolution
Length = 347
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 5 LFFQDYPDRFGFSVSHTTRGPRPGE-VDGKAYHFVTRADMEERIAAGEFLE 54
LF DY DR S ++ +GP + GK VT+ D A F E
Sbjct: 257 LFKSDYSDRLSISXANVLKGPSDVTGITGKVIESVTKVDGTGSPTAQPFTE 307
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 49 AGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLD-IEVQGVQQVK 93
AG + EH +F A+++G+ +A + + + +LD + +Q + +++
Sbjct: 116 AGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQDIYEIR 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,726,669
Number of Sequences: 62578
Number of extensions: 163506
Number of successful extensions: 398
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 24
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)