Query psy9156
Match_columns 177
No_of_seqs 162 out of 1143
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:21:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 4.7E-50 1E-54 320.9 17.3 155 2-161 20-174 (191)
2 PRK14737 gmk guanylate kinase; 100.0 1.7E-44 3.7E-49 289.9 17.1 155 2-160 20-175 (186)
3 PF00625 Guanylate_kin: Guanyl 100.0 8.5E-42 1.8E-46 271.4 17.1 155 2-159 18-172 (183)
4 smart00072 GuKc Guanylate kina 100.0 3.5E-41 7.5E-46 268.6 17.8 158 2-162 18-175 (184)
5 PLN02772 guanylate kinase 100.0 5.4E-40 1.2E-44 288.9 15.5 154 2-158 151-307 (398)
6 PRK14738 gmk guanylate kinase; 100.0 1.1E-33 2.4E-38 229.7 17.0 143 2-148 29-171 (206)
7 KOG0707|consensus 100.0 1.1E-34 2.4E-39 238.5 7.9 142 2-146 53-194 (231)
8 KOG0609|consensus 100.0 1.7E-33 3.7E-38 252.0 12.6 153 2-157 356-516 (542)
9 TIGR03263 guanyl_kin guanylate 100.0 1.2E-27 2.6E-32 188.2 16.8 152 2-157 17-168 (180)
10 PRK00300 gmk guanylate kinase; 100.0 5.8E-27 1.3E-31 188.0 16.8 155 2-160 21-175 (205)
11 cd00071 GMPK Guanosine monopho 99.9 4.7E-26 1E-30 174.4 13.2 107 2-111 15-121 (137)
12 COG3709 Uncharacterized compon 99.8 1.7E-19 3.6E-24 142.4 13.7 120 14-141 35-154 (192)
13 PRK10078 ribose 1,5-bisphospho 99.8 6.2E-19 1.3E-23 140.5 11.3 131 2-139 18-148 (186)
14 KOG0708|consensus 99.8 2.6E-19 5.6E-24 155.5 8.1 135 2-168 200-334 (359)
15 TIGR02322 phosphon_PhnN phosph 99.8 2.7E-17 5.9E-22 129.4 15.7 130 2-139 17-148 (179)
16 PRK08356 hypothetical protein; 99.5 6.4E-15 1.4E-19 118.2 1.7 132 2-141 21-159 (195)
17 PRK00091 miaA tRNA delta(2)-is 98.9 1.2E-09 2.5E-14 94.4 2.6 122 2-141 20-150 (307)
18 cd00227 CPT Chloramphenicol (C 97.9 9.8E-06 2.1E-10 63.7 3.0 66 58-125 66-134 (175)
19 TIGR00174 miaA tRNA isopenteny 97.6 4.7E-05 1E-09 65.4 3.7 73 2-86 15-97 (287)
20 PRK00698 tmk thymidylate kinas 97.1 0.0012 2.6E-08 52.3 5.6 127 2-141 19-172 (205)
21 KOG3209|consensus 97.0 0.00017 3.7E-09 68.1 0.0 53 14-68 63-115 (984)
22 PRK14731 coaE dephospho-CoA ki 96.3 0.0037 8E-08 50.7 3.3 51 103-154 136-186 (208)
23 PF13671 AAA_33: AAA domain; P 94.6 0.029 6.2E-07 41.6 2.7 103 35-140 25-139 (143)
24 PRK04040 adenylate kinase; Pro 94.6 0.087 1.9E-06 42.2 5.6 42 100-142 111-156 (188)
25 TIGR00152 dephospho-CoA kinase 94.4 0.11 2.3E-06 41.1 5.6 48 103-151 126-173 (188)
26 PRK00081 coaE dephospho-CoA ki 93.8 0.18 3.9E-06 40.3 5.9 93 38-137 65-160 (194)
27 PHA02530 pseT polynucleotide k 93.6 0.65 1.4E-05 39.0 9.2 102 34-138 28-141 (300)
28 KOG3580|consensus 93.3 0.11 2.3E-06 49.2 4.2 52 66-120 676-730 (1027)
29 PRK06762 hypothetical protein; 93.0 1.4 3E-05 33.7 9.6 63 70-135 61-132 (166)
30 PRK00098 GTPase RsgA; Reviewed 92.9 0.031 6.8E-07 47.9 0.2 77 2-79 180-277 (298)
31 PRK14530 adenylate kinase; Pro 92.3 0.39 8.4E-06 38.7 5.8 41 102-142 135-179 (215)
32 TIGR01360 aden_kin_iso1 adenyl 91.0 1 2.2E-05 34.7 6.8 69 70-141 75-152 (188)
33 PTZ00451 dephospho-CoA kinase; 90.9 0.27 5.9E-06 41.3 3.6 52 102-154 138-189 (244)
34 PRK14531 adenylate kinase; Pro 90.4 0.63 1.4E-05 36.6 5.2 63 77-141 79-149 (183)
35 PRK12339 2-phosphoglycerate ki 90.0 0.76 1.7E-05 37.2 5.4 54 70-125 90-143 (197)
36 cd01672 TMPK Thymidine monopho 89.9 2 4.4E-05 33.0 7.6 65 60-125 69-149 (200)
37 PLN02840 tRNA dimethylallyltra 89.8 0.16 3.6E-06 45.9 1.5 60 14-84 57-117 (421)
38 cd02022 DPCK Dephospho-coenzym 88.6 0.83 1.8E-05 35.8 4.6 35 103-138 124-158 (179)
39 PRK01184 hypothetical protein; 88.1 2.6 5.7E-05 32.7 7.1 58 77-137 80-143 (184)
40 TIGR01313 therm_gnt_kin carboh 87.7 5.4 0.00012 30.3 8.5 63 69-135 62-129 (163)
41 PRK00279 adk adenylate kinase; 85.8 5.2 0.00011 32.1 7.9 21 122-142 160-180 (215)
42 PRK14526 adenylate kinase; Pro 85.6 3.7 8E-05 33.5 6.9 21 122-142 155-175 (211)
43 TIGR02173 cyt_kin_arch cytidyl 85.4 3.1 6.6E-05 31.5 6.1 33 103-136 94-126 (171)
44 PRK14732 coaE dephospho-CoA ki 85.2 1 2.2E-05 36.3 3.5 52 102-154 123-174 (196)
45 PRK14527 adenylate kinase; Pro 84.9 2.2 4.8E-05 33.6 5.2 39 103-142 114-158 (191)
46 PLN02422 dephospho-CoA kinase 84.3 1.2 2.5E-05 37.2 3.5 52 102-154 127-178 (232)
47 cd01428 ADK Adenylate kinase ( 83.4 12 0.00027 28.8 8.8 82 77-162 77-187 (194)
48 PRK14734 coaE dephospho-CoA ki 83.4 1.3 2.9E-05 35.6 3.3 52 102-154 127-178 (200)
49 COG1936 Predicted nucleotide k 81.8 4.6 0.0001 32.6 5.8 62 62-133 49-113 (180)
50 PRK14528 adenylate kinase; Pro 81.5 3.8 8.2E-05 32.4 5.3 47 102-152 109-161 (186)
51 TIGR01351 adk adenylate kinase 81.4 6.3 0.00014 31.5 6.6 64 77-142 78-177 (210)
52 TIGR03574 selen_PSTK L-seryl-t 81.1 13 0.00028 30.5 8.5 67 66-135 57-130 (249)
53 PF00406 ADK: Adenylate kinase 80.6 5.8 0.00013 29.8 5.9 90 41-142 43-140 (151)
54 PLN02674 adenylate kinase 80.3 3.9 8.6E-05 34.3 5.2 21 122-142 191-211 (244)
55 TIGR00041 DTMP_kinase thymidyl 78.4 27 0.00058 27.1 9.2 24 102-126 129-152 (195)
56 PRK14730 coaE dephospho-CoA ki 77.5 2.7 5.8E-05 33.7 3.3 33 103-136 128-160 (195)
57 PRK14532 adenylate kinase; Pro 76.9 17 0.00036 28.2 7.6 39 103-142 109-153 (188)
58 PRK02496 adk adenylate kinase; 76.9 6.5 0.00014 30.5 5.3 39 102-141 109-149 (184)
59 PF07931 CPT: Chloramphenicol 76.6 5.3 0.00011 31.8 4.7 88 35-124 29-132 (174)
60 COG1618 Predicted nucleotide k 76.0 8.9 0.00019 30.9 5.7 46 68-118 121-170 (179)
61 KOG3347|consensus 74.4 5.3 0.00012 31.9 4.1 59 67-134 66-124 (176)
62 TIGR01359 UMP_CMP_kin_fam UMP- 72.8 9.6 0.00021 29.3 5.2 63 77-140 76-148 (183)
63 PRK13946 shikimate kinase; Pro 72.3 31 0.00068 26.9 8.2 23 101-124 103-125 (184)
64 PRK06761 hypothetical protein; 70.7 19 0.00042 30.9 7.0 105 2-123 19-128 (282)
65 PRK14733 coaE dephospho-CoA ki 70.6 4.9 0.00011 32.8 3.2 50 103-153 131-180 (204)
66 PRK07667 uridine kinase; Provi 70.3 18 0.00038 28.7 6.4 56 76-137 119-174 (193)
67 PLN02459 probable adenylate ki 70.3 24 0.00053 30.0 7.5 32 118-152 193-224 (261)
68 PF12728 HTH_17: Helix-turn-he 68.6 15 0.00033 22.5 4.6 42 35-78 10-51 (51)
69 PRK13975 thymidylate kinase; P 67.3 56 0.0012 25.2 9.0 38 103-141 116-155 (196)
70 PF13189 Cytidylate_kin2: Cyti 67.0 12 0.00027 29.3 4.8 70 61-137 80-149 (179)
71 PRK13808 adenylate kinase; Pro 65.8 14 0.0003 32.6 5.2 59 80-140 81-157 (333)
72 PF01121 CoaE: Dephospho-CoA k 65.8 4.3 9.4E-05 32.3 1.9 48 103-151 125-172 (180)
73 PRK15427 colanic acid biosynth 65.6 47 0.001 29.3 8.7 98 37-141 286-386 (406)
74 cd03065 PDI_b_Calsequestrin_N 64.7 44 0.00096 24.8 7.1 101 29-135 4-116 (120)
75 PRK04182 cytidylate kinase; Pr 63.2 18 0.0004 27.3 5.0 35 101-136 92-126 (180)
76 KOG3079|consensus 63.1 16 0.00035 29.8 4.8 37 102-139 114-156 (195)
77 PF12536 DUF3734: Patatin phos 63.0 13 0.00029 27.2 4.0 36 14-50 51-86 (108)
78 PRK13976 thymidylate kinase; P 62.7 70 0.0015 25.9 8.6 72 70-142 79-166 (209)
79 PRK09875 putative hydrolase; P 62.6 39 0.00084 29.1 7.3 92 38-138 191-287 (292)
80 PLN02200 adenylate kinase fami 62.1 20 0.00043 29.6 5.3 62 78-141 121-189 (234)
81 PRK14529 adenylate kinase; Pro 61.9 19 0.00041 29.8 5.1 20 121-140 160-180 (223)
82 PTZ00088 adenylate kinase 1; P 61.6 51 0.0011 27.2 7.7 33 117-152 168-200 (229)
83 PF01712 dNK: Deoxynucleoside 61.5 6.3 0.00014 30.0 2.1 23 102-125 69-91 (146)
84 PHA00729 NTP-binding motif con 61.5 49 0.0011 27.5 7.5 30 102-132 119-148 (226)
85 PF02223 Thymidylate_kin: Thym 60.1 67 0.0014 24.7 7.8 55 68-124 71-141 (186)
86 PLN02842 nucleotide kinase 59.3 12 0.00026 34.8 3.9 36 106-141 134-169 (505)
87 COG3350 Uncharacterized conser 58.8 9.5 0.00021 24.8 2.2 25 22-46 15-39 (53)
88 COG3265 GntK Gluconate kinase 58.3 54 0.0012 26.0 6.8 54 68-123 58-112 (161)
89 TIGR01663 PNK-3'Pase polynucle 58.1 65 0.0014 30.2 8.5 54 68-124 411-470 (526)
90 TIGR01764 excise DNA binding d 57.8 36 0.00078 19.8 4.8 40 35-76 10-49 (49)
91 COG0237 CoaE Dephospho-CoA kin 57.2 20 0.00043 29.2 4.4 34 103-137 126-159 (201)
92 PRK00625 shikimate kinase; Pro 56.9 77 0.0017 24.9 7.7 34 84-124 85-118 (173)
93 PF13238 AAA_18: AAA domain; P 56.8 18 0.00038 25.5 3.7 23 105-128 96-118 (129)
94 PRK08233 hypothetical protein; 55.6 41 0.00088 25.5 5.8 21 102-123 99-119 (182)
95 cd02021 GntK Gluconate kinase 54.5 84 0.0018 23.1 8.8 48 75-124 70-120 (150)
96 cd02020 CMPK Cytidine monophos 54.4 28 0.00061 25.2 4.6 35 102-137 84-123 (147)
97 PLN02924 thymidylate kinase 54.1 1.1E+02 0.0023 25.0 8.3 71 68-142 91-177 (220)
98 PRK12337 2-phosphoglycerate ki 53.5 41 0.00089 31.2 6.2 55 69-126 351-408 (475)
99 KOG3220|consensus 52.9 1E+02 0.0022 25.7 7.9 60 71-136 100-160 (225)
100 COG1859 KptA RNA:NAD 2'-phosph 51.5 34 0.00074 28.3 4.9 47 61-109 123-175 (211)
101 PRK06217 hypothetical protein; 49.9 75 0.0016 24.6 6.6 47 72-123 59-105 (183)
102 PRK09270 nucleoside triphospha 48.9 40 0.00087 27.3 5.0 33 103-136 163-198 (229)
103 PF08312 cwf21: cwf21 domain; 48.8 33 0.00072 21.4 3.5 28 114-142 15-42 (46)
104 COG1428 Deoxynucleoside kinase 48.8 20 0.00044 29.8 3.2 23 102-125 128-150 (216)
105 PRK06696 uridine kinase; Valid 48.7 60 0.0013 26.1 6.0 21 102-123 148-168 (223)
106 cd02030 NDUO42 NADH:Ubiquinone 48.5 40 0.00086 27.2 4.9 23 102-125 144-166 (219)
107 PF00534 Glycos_transf_1: Glyc 48.2 1.1E+02 0.0024 22.6 7.4 77 37-123 80-156 (172)
108 COG3072 CyaA Adenylate cyclase 46.5 27 0.00059 33.7 4.0 51 112-169 5-62 (853)
109 cd03799 GT1_amsK_like This is 46.2 1.6E+02 0.0035 24.0 8.4 97 37-141 243-342 (355)
110 KOG1384|consensus 44.5 20 0.00044 31.8 2.7 99 14-123 43-159 (348)
111 PRK13695 putative NTPase; Prov 44.3 1E+02 0.0022 23.5 6.5 51 67-117 116-166 (174)
112 PRK09087 hypothetical protein; 43.8 70 0.0015 26.1 5.7 74 69-145 109-193 (226)
113 COG2019 AdkA Archaeal adenylat 43.6 56 0.0012 26.5 4.9 38 100-138 110-151 (189)
114 PRK13948 shikimate kinase; Pro 43.0 1.7E+02 0.0036 23.2 7.7 46 70-122 73-123 (182)
115 cd01673 dNK Deoxyribonucleosid 43.0 53 0.0011 25.4 4.7 21 103-124 127-147 (193)
116 PF12633 Adenyl_cycl_N: Adenyl 42.7 16 0.00034 30.1 1.6 50 112-168 5-61 (204)
117 PRK09825 idnK D-gluconate kina 42.2 54 0.0012 25.6 4.6 24 100-124 98-121 (176)
118 COG0563 Adk Adenylate kinase a 42.0 1.7E+02 0.0036 23.1 7.5 88 46-140 52-148 (178)
119 COG4050 Uncharacterized protei 41.4 33 0.00071 26.2 3.1 67 104-174 6-77 (152)
120 cd07947 DRE_TIM_Re_CS Clostrid 41.3 2.2E+02 0.0049 24.2 10.6 100 25-139 8-122 (279)
121 KOG3812|consensus 41.1 47 0.001 29.8 4.4 44 78-124 263-307 (475)
122 PRK11545 gntK gluconate kinase 40.7 82 0.0018 24.2 5.4 24 100-124 90-113 (163)
123 PHA02757 hypothetical protein; 40.6 24 0.00053 24.0 2.0 26 62-87 30-55 (75)
124 PF02702 KdpD: Osmosensitive K 40.4 26 0.00057 29.0 2.6 78 56-134 95-187 (211)
125 PRK13974 thymidylate kinase; P 40.2 1.9E+02 0.0041 23.0 8.0 23 102-125 136-158 (212)
126 TIGR00235 udk uridine kinase. 39.9 1.3E+02 0.0028 23.8 6.6 19 102-120 127-145 (207)
127 PRK08154 anaerobic benzoate ca 39.8 1.3E+02 0.0028 25.7 7.0 22 101-123 227-248 (309)
128 cd00464 SK Shikimate kinase (S 39.6 1.5E+02 0.0032 21.6 7.4 23 100-123 91-113 (154)
129 PF06021 Gly_acyl_tr_N: Aralky 39.5 24 0.00052 29.1 2.3 64 6-74 45-118 (205)
130 PLN00078 photosystem I reactio 39.5 14 0.00031 27.4 0.9 40 110-162 55-94 (122)
131 PHA01630 putative group 1 glyc 39.3 1.6E+02 0.0034 25.4 7.5 96 37-140 197-310 (331)
132 COG4639 Predicted kinase [Gene 39.0 2E+02 0.0044 23.0 7.7 68 66-136 58-132 (168)
133 PRK13947 shikimate kinase; Pro 38.8 1.3E+02 0.0029 22.5 6.3 20 103-123 96-115 (171)
134 PRK09450 cyaA adenylate cyclas 38.8 39 0.00084 33.5 3.9 50 112-168 5-61 (830)
135 PRK05480 uridine/cytidine kina 38.6 1.4E+02 0.003 23.4 6.6 35 102-137 127-165 (209)
136 cd01421 IMPCH Inosine monophos 38.5 53 0.0011 26.7 4.1 65 83-151 119-183 (187)
137 cd05844 GT1_like_7 Glycosyltra 38.0 2.2E+02 0.0048 23.5 8.1 95 37-139 252-349 (367)
138 KOG3354|consensus 37.7 68 0.0015 25.9 4.5 22 101-123 118-139 (191)
139 PRK00131 aroK shikimate kinase 35.5 1.6E+02 0.0034 21.8 6.2 22 101-123 97-118 (175)
140 PLN02348 phosphoribulokinase 35.3 62 0.0014 29.3 4.4 86 42-136 131-221 (395)
141 cd03798 GT1_wlbH_like This fam 34.8 2.3E+02 0.0051 22.5 7.8 82 32-123 260-342 (377)
142 PRK14530 adenylate kinase; Pro 34.6 77 0.0017 25.2 4.5 49 72-124 77-128 (215)
143 PRK13949 shikimate kinase; Pro 34.6 2.1E+02 0.0046 22.0 8.5 31 84-121 83-113 (169)
144 COG2205 KdpD Osmosensitive K+ 34.1 2.1E+02 0.0045 28.7 7.9 86 49-135 100-205 (890)
145 cd03819 GT1_WavL_like This fam 34.0 2E+02 0.0043 23.5 7.1 92 40-140 254-345 (355)
146 PF13692 Glyco_trans_1_4: Glyc 33.6 1.7E+02 0.0037 20.6 7.2 103 3-120 25-130 (135)
147 PRK04220 2-phosphoglycerate ki 33.4 1.8E+02 0.0039 25.3 6.8 56 68-126 181-239 (301)
148 TIGR02563 cas_Csy4 CRISPR-asso 33.1 60 0.0013 26.2 3.6 37 102-139 98-134 (185)
149 PF04945 YHS: YHS domain; Int 33.0 26 0.00057 21.4 1.2 16 29-44 19-34 (47)
150 PHA02591 hypothetical protein; 32.8 1.8E+02 0.0039 20.5 6.3 66 69-141 10-76 (83)
151 PF11341 DUF3143: Protein of u 32.0 31 0.00067 23.2 1.5 17 61-77 47-63 (63)
152 PRK11032 hypothetical protein; 31.8 48 0.001 26.2 2.8 50 113-162 9-65 (160)
153 cd04470 S1_EF-P_repeat_1 S1_EF 31.8 9.6 0.00021 25.0 -1.0 17 30-46 10-26 (61)
154 PRK10490 sensor protein KdpD; 31.6 1.5E+02 0.0033 29.3 6.8 102 34-136 84-208 (895)
155 PF10743 Phage_Cox: Regulatory 30.9 79 0.0017 22.6 3.5 32 37-84 12-43 (87)
156 PF08433 KTI12: Chromatin asso 30.4 2.4E+02 0.0053 23.8 7.1 100 32-138 29-138 (270)
157 PHA02150 hypothetical protein 30.2 37 0.00079 23.1 1.6 16 34-49 2-17 (77)
158 PF09048 Cro: Cro; InterPro: 30.2 36 0.00079 22.6 1.5 27 62-88 21-47 (59)
159 PRK13973 thymidylate kinase; P 29.7 2.9E+02 0.0062 22.0 9.7 56 68-124 80-151 (213)
160 PRK09814 beta-1,6-galactofuran 29.7 3.5E+02 0.0075 22.9 9.8 82 31-121 207-296 (333)
161 PF12616 DUF3775: Protein of u 29.4 85 0.0018 21.7 3.4 44 118-162 25-68 (75)
162 PF02254 TrkA_N: TrkA-N domain 28.8 1.8E+02 0.004 20.2 5.3 43 70-117 14-57 (116)
163 COG5493 Uncharacterized conser 28.6 86 0.0019 26.0 3.8 58 38-96 114-188 (231)
164 PRK03333 coaE dephospho-CoA ki 28.5 63 0.0014 28.8 3.3 34 102-136 125-158 (395)
165 cd03801 GT1_YqgM_like This fam 28.1 3E+02 0.0065 21.7 8.5 75 37-121 263-337 (374)
166 cd02025 PanK Pantothenate kina 27.5 63 0.0014 26.3 2.9 43 74-122 101-149 (220)
167 PF00485 PRK: Phosphoribulokin 26.9 1.4E+02 0.0031 23.2 4.8 85 45-137 77-166 (194)
168 PF04210 MtrG: Tetrahydrometha 26.6 1E+02 0.0022 21.2 3.2 29 105-141 7-35 (70)
169 PF01202 SKI: Shikimate kinase 26.6 2.8E+02 0.006 20.9 6.2 47 70-124 55-107 (158)
170 COG1160 Predicted GTPases [Gen 26.4 44 0.00095 30.7 1.9 46 2-48 194-241 (444)
171 cd02026 PRK Phosphoribulokinas 26.2 1.3E+02 0.0029 25.3 4.8 35 102-137 117-155 (273)
172 PRK06620 hypothetical protein; 26.0 2.1E+02 0.0046 23.1 5.8 68 71-141 107-183 (214)
173 TIGR03181 PDH_E1_alph_x pyruva 25.7 1.8E+02 0.0039 25.4 5.6 91 53-147 208-310 (341)
174 cd02958 UAS UAS family; UAS is 25.6 2.1E+02 0.0046 20.1 5.2 68 68-139 43-112 (114)
175 PRK12323 DNA polymerase III su 25.4 5.9E+02 0.013 25.0 9.3 93 43-137 83-195 (700)
176 KOG0770|consensus 25.0 44 0.00096 29.0 1.6 25 101-126 138-162 (353)
177 PRK07933 thymidylate kinase; V 24.8 3.7E+02 0.0079 21.6 8.5 21 103-124 135-155 (213)
178 PRK06547 hypothetical protein; 24.8 3.4E+02 0.0073 21.1 6.8 22 102-124 119-140 (172)
179 cd02023 UMPK Uridine monophosp 24.6 3.3E+02 0.0072 21.0 6.8 31 103-134 121-155 (198)
180 PRK05416 glmZ(sRNA)-inactivati 24.3 2.9E+02 0.0062 23.7 6.5 21 100-121 85-105 (288)
181 PF12221 HflK_N: Bacterial mem 24.3 57 0.0012 20.1 1.6 14 109-122 20-33 (42)
182 COG4185 Uncharacterized protei 24.2 3.2E+02 0.007 22.1 6.2 90 70-159 62-160 (187)
183 PF12623 Hen1_L: RNA repair, l 24.1 70 0.0015 27.0 2.5 31 30-68 190-220 (245)
184 PF01885 PTS_2-RNA: RNA 2'-pho 23.3 1.4E+02 0.0031 23.8 4.2 46 61-109 108-159 (186)
185 cd03822 GT1_ecORF704_like This 22.9 4.1E+02 0.0088 21.4 7.6 82 32-122 248-331 (366)
186 PRK00114 hslO Hsp33-like chape 22.9 2.2E+02 0.0047 24.4 5.5 39 38-76 252-291 (293)
187 TIGR03458 YgfH_subfam succinat 22.5 2.4E+02 0.0052 26.2 6.0 59 33-91 95-163 (485)
188 PRK03839 putative kinase; Prov 22.2 2E+02 0.0043 21.9 4.8 21 103-124 82-102 (180)
189 cd03794 GT1_wbuB_like This fam 22.1 4.2E+02 0.0091 21.2 8.2 99 31-137 275-376 (394)
190 PF11471 Sugarporin_N: Maltopo 21.8 1.5E+02 0.0032 19.6 3.3 24 114-145 29-52 (60)
191 PF01132 EFP: Elongation facto 21.8 14 0.00031 23.6 -1.5 15 31-45 10-24 (55)
192 KOG3877|consensus 21.2 3.9E+02 0.0084 23.7 6.6 58 67-125 161-241 (393)
193 KOG3366|consensus 21.2 66 0.0014 25.8 1.8 42 121-163 101-142 (172)
194 PRK00889 adenylylsulfate kinas 20.9 3.4E+02 0.0074 20.5 5.8 42 74-119 73-117 (175)
195 cd03821 GT1_Bme6_like This fam 20.9 4.4E+02 0.0095 21.0 7.2 94 33-139 264-358 (375)
196 PRK00881 purH bifunctional pho 20.9 1.9E+02 0.0041 27.2 4.9 74 80-162 121-194 (513)
197 PF08664 YcbB: YcbB domain; I 20.9 1.3E+02 0.0028 23.1 3.3 53 107-159 37-98 (134)
198 PF01583 APS_kinase: Adenylyls 20.7 3.7E+02 0.008 20.9 5.9 44 73-118 70-116 (156)
199 cd01292 metallo-dependent_hydr 20.6 2.5E+02 0.0055 21.8 5.2 47 39-85 185-234 (275)
200 PF06414 Zeta_toxin: Zeta toxi 20.6 1.6E+02 0.0035 23.1 4.0 54 68-122 84-141 (199)
201 COG0742 N6-adenine-specific me 20.5 2.1E+02 0.0045 23.2 4.6 71 14-95 14-85 (187)
202 PF14213 DUF4325: Domain of un 20.5 17 0.00037 24.4 -1.5 63 68-137 8-71 (74)
203 KOG4180|consensus 20.1 1.4E+02 0.003 26.8 3.7 54 111-168 48-114 (395)
204 cd03818 GT1_ExpC_like This fam 20.0 5.6E+02 0.012 21.9 7.9 76 37-122 288-363 (396)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-50 Score=320.89 Aligned_cols=155 Identities=46% Similarity=0.733 Sum_probs=148.9
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++.+ .+.++||+|||+||+||+||+||||||+++|++++++|+||||++|+|||||||+..|+.++.+|++|+
T Consensus 20 l~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~~~~~G~~vi 97 (191)
T COG0194 20 LVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVI 97 (191)
T ss_pred HHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHHHHhcCCeEE
Confidence 688999987 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVE 161 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~ 161 (177)
+++|+||++++|+.+ +++++|||.|||+++|++||.+||+++++.|++||.+|..||++.+.+++.+.|+++..=+.
T Consensus 98 ldId~qGa~qvk~~~---p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~ 174 (191)
T COG0194 98 LDIDVQGALQVKKKM---PNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALE 174 (191)
T ss_pred EEEehHHHHHHHHhC---CCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHH
Confidence 999999999999999 79999999999999999999999999999999999999999999999999999988765443
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=1.7e-44 Score=289.92 Aligned_cols=155 Identities=37% Similarity=0.632 Sum_probs=145.6
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++.+|+ +.++++||||+||+||+||+||||||+++|++++++|+|+|||+|+||+||||+++|+.++++|++||
T Consensus 20 l~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i 98 (186)
T PRK14737 20 IIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAI 98 (186)
T ss_pred HHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHHHHHcCCeEE
Confidence 78899999987 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCce-EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGA-VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYV 160 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~-~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~ 160 (177)
+++|++|++++++.+ +++ ++|||.|||.+.+++||.+|+++++++|++||+++..|+++.+.++....|+++..-.
T Consensus 99 ~d~~~~g~~~l~~~~---~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~dle~a~ 175 (186)
T PRK14737 99 MDIDVQGAKIIKEKF---PERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIINDDLEDAI 175 (186)
T ss_pred EEcCHHHHHHHHHhC---CCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECcCHHHHH
Confidence 999999999999988 555 8999999999999999999999999999999999999999888888888888766543
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=100.00 E-value=8.5e-42 Score=271.43 Aligned_cols=155 Identities=43% Similarity=0.787 Sum_probs=142.2
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++.+|+.|.++++|||||||+||+||+||||||+++|++|+++|+|+||++++|++|||++++|++++++|++||
T Consensus 18 l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~~~i~~~~~~gk~~i 97 (183)
T PF00625_consen 18 LAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSKSAIDKVLEEGKHCI 97 (183)
T ss_dssp HHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEHHHHHHHHHTTTEEE
T ss_pred HHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhccchhhHhhhcCCcEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~ 159 (177)
+++|++|+++|++.. ++|++|||.|||.+.|++||++||+++.+++.+|+..++.++.....++....|+++..-
T Consensus 98 l~~~~~g~~~L~~~~---~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~vi~n~~le~~ 172 (183)
T PF00625_consen 98 LDVDPEGVKQLKKAG---FNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYVIVNDDLEEA 172 (183)
T ss_dssp EEETHHHHHHHHHCT---TTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEEEECSSHHHH
T ss_pred EEccHHHHHHHHhcc---cCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEEEECcCHHHH
Confidence 999999999999996 899999999999999999999999888899999999999999887777777777666543
No 4
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=3.5e-41 Score=268.60 Aligned_cols=158 Identities=43% Similarity=0.707 Sum_probs=147.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++.+|+.|.++++||||+||+||.+|+||+|||+++|++++++|+|+||++++||+|||++++|++++++|++||
T Consensus 18 l~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~~~~~~~~~i 97 (184)
T smart00072 18 LLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQVAEQGKHCL 97 (184)
T ss_pred HHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHHHHHHHHHcCCeEE
Confidence 67899999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVE 161 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~ 161 (177)
++++++|+.++++.+ ++|++|||.|||.++|++||.+||++++++|++||..|.+++...+.++....|+++.+-++
T Consensus 98 ld~~~~~~~~l~~~~---~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~fd~~I~n~~l~~~~~ 174 (184)
T smart00072 98 LDIDPQGVKQLRKAQ---LYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVIVNDDLEDAYE 174 (184)
T ss_pred EEECHHHHHHHHHhC---CCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHH
Confidence 999999999999988 89999999999999999999999999999999999999998876666777777777666544
Q ss_pred h
Q psy9156 162 A 162 (177)
Q Consensus 162 ~ 162 (177)
+
T Consensus 175 ~ 175 (184)
T smart00072 175 E 175 (184)
T ss_pred H
Confidence 3
No 5
>PLN02772 guanylate kinase
Probab=100.00 E-value=5.4e-40 Score=288.87 Aligned_cols=154 Identities=47% Similarity=0.781 Sum_probs=143.9
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++++|..|.++++||||+||++|.+|+||||+|+++|++++++|+|+|||+++||+||||+++|+.++++|++||
T Consensus 151 L~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vI 230 (398)
T PLN02772 151 LISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCI 230 (398)
T ss_pred HHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEE
Confidence 78899999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc---hhhhhhcccccch
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGK---DSLRSYGKNSLRS 158 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~---~~~~~~~~~~~~~ 158 (177)
+++|++|++++++.. +.+++|||.|||+++|++||..||++++++|++||++|+.||++.. .++....|+++..
T Consensus 231 LdLD~qGar~Lr~~~---l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~ 307 (398)
T PLN02772 231 LDIDVQGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEE 307 (398)
T ss_pred EeCCHHHHHHHHHhc---CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECCCHHH
Confidence 999999999999988 7899999999999999999999999999999999999999997643 4566667766553
No 6
>PRK14738 gmk guanylate kinase; Provisional
Probab=100.00 E-value=1.1e-33 Score=229.71 Aligned_cols=143 Identities=38% Similarity=0.592 Sum_probs=132.8
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|.+..+ .|.++++||||+||++|++|++|||||+++|++++++|.|+||++++||+|||++++|+.++++|++||
T Consensus 29 l~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~~~i~~~~~~g~~vi 107 (206)
T PRK14738 29 VLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVI 107 (206)
T ss_pred HHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCHHHHHHHHHcCCcEE
Confidence 6777876655 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 148 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~ 148 (177)
++++++|+..+++.+ +++++||+.|||.++|++||.+|++++++++.+|+..+..++.....++
T Consensus 108 ~~~~~~g~~~l~~~~---pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~~~ 171 (206)
T PRK14738 108 VKVDVQGAASIKRLV---PEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPEFD 171 (206)
T ss_pred EEcCHHHHHHHHHhC---CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999988 7899999999999999999999998899999999999998887655443
No 7
>KOG0707|consensus
Probab=100.00 E-value=1.1e-34 Score=238.46 Aligned_cols=142 Identities=49% Similarity=0.788 Sum_probs=137.6
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++++|..|.+++|||||.||++|++|+||||++.++|+.|+++++|+|||+++||+|||+++++++....|+.|+
T Consensus 53 ll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGtsi~av~~~~~~gk~~i 132 (231)
T KOG0707|consen 53 LLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTSIAAVQRLMLSGKVCI 132 (231)
T ss_pred HHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCchHHHHHHHHhcCCcce
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcch
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 146 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~ 146 (177)
++||.+|++.++... +++++||+.|||...+++||++||+++++++.+|+..|+.|++....
T Consensus 133 ldId~qg~~~i~~~~---~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~ 194 (231)
T KOG0707|consen 133 LDIDLQGVQPIRATS---LDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILEN 194 (231)
T ss_pred eehhhcCceeeecCC---CceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccC
Confidence 999999999999887 99999999999999999999999999999999999999999987765
No 8
>KOG0609|consensus
Probab=100.00 E-value=1.7e-33 Score=252.04 Aligned_cols=153 Identities=41% Similarity=0.625 Sum_probs=134.5
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|.++|+..+|++|+.+|+||||+||++|++|++|||||+++|+++|.+|+|+||++|.||+|||++++|.+++++||+||
T Consensus 356 lk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicv 435 (542)
T KOG0609|consen 356 LKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICV 435 (542)
T ss_pred HHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHH-Hhhhcchhhhhhcc
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG-------TETEDSLRRRLDLARR-DMSYGKDSLRSYGK 153 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg-------~es~e~I~~RL~~a~~-e~~~~~~~~~~~~~ 153 (177)
|++.|+.++.||... +.|++|||.||+++.|++-.+.-. ..+++++++.+..++. |..+++.++....|
T Consensus 436 Ldv~Pqalk~lRt~E---f~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN 512 (542)
T KOG0609|consen 436 LDVEPQALKVLRTAE---FKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVN 512 (542)
T ss_pred EecCHHHhhhhhhhc---ccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEc
Confidence 999999999999998 999999999999999976333222 2567888888877643 55666666666666
Q ss_pred cccc
Q psy9156 154 NSLR 157 (177)
Q Consensus 154 ~~~~ 157 (177)
+++-
T Consensus 513 ~dld 516 (542)
T KOG0609|consen 513 SDLD 516 (542)
T ss_pred CcHH
Confidence 6543
No 9
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.96 E-value=1.2e-27 Score=188.16 Aligned_cols=152 Identities=45% Similarity=0.744 Sum_probs=140.8
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+|. +..++++|||+|+.||.+|.+|+|++.++|.+++..|+|++++.+.|++||++++.++.++++|++||
T Consensus 17 l~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~~~~g~~vi 95 (180)
T TIGR03263 17 LVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVL 95 (180)
T ss_pred HHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHHHHHHCCCeEE
Confidence 67788888876 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccc
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLR 157 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~ 157 (177)
+++++.|+..+++.+ ..++.||+.||+.+.+++||.+|+.+++++|++||..+..++++...|+....|+++.
T Consensus 96 ~d~~~~~~~~~~~~~---~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d~~i~n~~~~ 168 (180)
T TIGR03263 96 LEIDVQGARQVKKKF---PDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVNDDLE 168 (180)
T ss_pred EECCHHHHHHHHHhC---CCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCcEEEECCCHH
Confidence 999999999999998 7899999999999999999999999899999999999998888877777777666553
No 10
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.95 E-value=5.8e-27 Score=187.96 Aligned_cols=155 Identities=44% Similarity=0.709 Sum_probs=141.2
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+| .+.+.+++|||+|+.||.+|.+|+|++.++|.+++.+|+|++++++.|++||++...|..++.+|++||
T Consensus 21 l~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~l~~g~~vi 99 (205)
T PRK00300 21 LVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVL 99 (205)
T ss_pred HHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCcHHHHHHHHHcCCeEE
Confidence 6778888887 588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYV 160 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~ 160 (177)
+++|++|+..+++.+ .++++||+.|||.+++++||..|+.++++++++|+..+..+++....++....++++..-+
T Consensus 100 ~dl~~~g~~~l~~~~---~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~~~e~~~ 175 (205)
T PRK00300 100 LEIDWQGARQVKKKM---PDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVNDDLDTAL 175 (205)
T ss_pred EeCCHHHHHHHHHhC---CCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhCCEEEECCCHHHHH
Confidence 999999999999998 6789999999999999999999999899999999999988887766666666655554433
No 11
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.94 E-value=4.7e-26 Score=174.43 Aligned_cols=107 Identities=52% Similarity=0.894 Sum_probs=103.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|.+.+|..|..+++||||+||++|.+|++|+|+|.++|.+++.+|+|+||++++||+||+++++|++++++|++||
T Consensus 15 l~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i~~~~~~g~~~i 94 (137)
T cd00071 15 LLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVI 94 (137)
T ss_pred HHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcHHHHHHHHhCCCeEE
Confidence 67888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCC
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPS 111 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps 111 (177)
+++|++|++++++.+ +++++|||.||+
T Consensus 95 l~~~~~~~~~l~~~~---~~~~~I~i~~~~ 121 (137)
T cd00071 95 LEIDVQGARQVKKSY---PDAVSIFILPPD 121 (137)
T ss_pred EEecHHHHHHHHHcC---CCeEEEEEECCC
Confidence 999999999999988 899999999994
No 12
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.7e-19 Score=142.36 Aligned_cols=120 Identities=22% Similarity=0.297 Sum_probs=109.9
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHH
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVK 93 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk 93 (177)
+.|+.+++|||. +..|+|+.-+|..+|.++..+|.|.-.|+.||.+||+| .+|...+++|.++|++.+..-+.+++
T Consensus 35 ~~fvrRvITRpa---~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip-~eId~wl~~G~vvl~NgSRa~Lp~ar 110 (192)
T COG3709 35 LHFVRRVITRPA---DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIP-AEIDLWLAAGDVVLVNGSRAVLPQAR 110 (192)
T ss_pred eEEEEEEecccC---CCCcccccccCHHHHHHHhhcCceeEEehhcCccccCc-hhHHHHHhCCCEEEEeccHhhhHHHH
Confidence 899999999998 56678999999999999999999999999999999999 78999999999999988888888899
Q ss_pred HHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 94 RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 94 ~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
+.| ....+|.|.++ .++|.+||..||+||.++|..||+++....
T Consensus 111 rry---~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~ 154 (192)
T COG3709 111 RRY---PQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT 154 (192)
T ss_pred Hhh---hcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc
Confidence 999 67778888875 599999999999999999999999986554
No 13
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.79 E-value=6.2e-19 Score=140.49 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=108.0
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|....+..|....+.|||+++.+ +.+|+|++.++|.+++++|.|+++|.++||+|||++ +++..++.|++||
T Consensus 18 l~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-~~~~~l~~g~~VI 93 (186)
T PRK10078 18 LLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-EIDLWLHAGFDVL 93 (186)
T ss_pred HHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-HHHHHHhCCCEEE
Confidence 566776665445888999999988654 678999999999999999999999999999999998 6999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
++........+++.++ ....+||+. +|.+++.+||..|++.+++++++||+++..
T Consensus 94 ~~G~~~~~~~~~~~~~--~~~~vi~l~-~s~e~l~~RL~~R~~~~~~~i~~rl~r~~~ 148 (186)
T PRK10078 94 VNGSRAHLPQARARYQ--SALLPVCLQ-VSPEILRQRLENRGRENASEINARLARAAR 148 (186)
T ss_pred EeChHHHHHHHHHHcC--CCEEEEEEe-CCHHHHHHHHHHhCCCCHHHHHHHHHHhhh
Confidence 8777666667888774 234455555 567999999999998888999999977543
No 14
>KOG0708|consensus
Probab=99.79 E-value=2.6e-19 Score=155.53 Aligned_cols=135 Identities=21% Similarity=0.402 Sum_probs=116.3
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|.+.|+.++|+.|..|+++|||+. +++|++.++.+.|+++++++|++|||+..+|+++.++|++||
T Consensus 200 l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCi 265 (359)
T KOG0708|consen 200 LLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCL 265 (359)
T ss_pred HHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceE
Confidence 578899999999999999999975 889999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVE 161 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~ 161 (177)
++++.++++.|+... +.|++|||.|.|.+.++.+-.+ .+.++-++ .++.+.+.+.+| .+||+
T Consensus 266 Ldv~~~ai~rLq~~~---IyPIvIfIr~ks~~~i~e~~~~---~t~~~ake-------~~e~a~klEqe~-----~~~~t 327 (359)
T KOG0708|consen 266 LDVGGDAIRRLQRNQ---IYPIVIFIRVKSKKQIKERNLK---ITGEQAKE-------LLERARKLEQEL-----DRYFT 327 (359)
T ss_pred EecCcchHHHHHhcc---eeceEEEEEechHHHHHHHhcc---cchHHHHH-------HHHHHHHhHhhh-----hhceE
Confidence 999999999999977 8999999999999888776422 34444343 445555556666 99999
Q ss_pred hhcccCC
Q psy9156 162 ASVSSGN 168 (177)
Q Consensus 162 ~~~~~~~ 168 (177)
++||+|.
T Consensus 328 ~vv~~~s 334 (359)
T KOG0708|consen 328 LVVQGGS 334 (359)
T ss_pred EEEeccc
Confidence 9999664
No 15
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.76 E-value=2.7e-17 Score=129.38 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=110.5
Q ss_pred HHHHHhhhCCC--ceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCe
Q psy9156 2 YSILFFQDYPD--RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 2 l~~~Ll~~~p~--~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~ 79 (177)
|++.|....+. .+.+..++|||++ +.+|++|+|++.++|..++.++.|.++++++|++||++. .+...+.+|..
T Consensus 17 l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~i~~~~~~g~~ 92 (179)
T TIGR02322 17 LLDYARARLAGDPRVHFVRRVITRPA---SAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA-EIDQWLEAGDV 92 (179)
T ss_pred HHHHHHHHcCcCCcEEEeeEEcccCC---CCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH-HHHHHHhcCCE
Confidence 45556554432 3678899999987 457999999999999999999999999999999999996 58888999999
Q ss_pred EEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 80 CVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 80 ~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
|+++.+.++...+++.+ .+..+||+.+ +.+.+.+||..|++.+++++++||.+...
T Consensus 93 vv~~g~~~~~~~~~~~~---~~~~~i~l~~-~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~ 148 (179)
T TIGR02322 93 VVVNGSRAVLPEARQRY---PNLLVVNITA-SPDVLAQRLAARGRESREEIEERLARSAR 148 (179)
T ss_pred EEEECCHHHHHHHHHHC---CCcEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Confidence 99999999888888877 5678899986 56999999999998888899999976543
No 16
>PRK08356 hypothetical protein; Provisional
Probab=99.49 E-value=6.4e-15 Score=118.25 Aligned_cols=132 Identities=17% Similarity=0.303 Sum_probs=93.7
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
+++.| +++ .|. .++++||.+|..+.+|.+|+|+++..|+.++..++|++|+++.+++||++. -++.+++..+.+.
T Consensus 21 ~a~~l-~~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~-~~~~~~~~~~~~~ 95 (195)
T PRK08356 21 VAKFF-EEK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI-LIRLAVDKKRNCK 95 (195)
T ss_pred HHHHH-HHC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH-HHHHHHHHhccCC
Confidence 45666 443 365 899999999999999999999999999999999999999999999999983 2222222222221
Q ss_pred EEecHHHHHHHHHHcC-CCCceEEEEEcCCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHHh
Q psy9156 82 LDIEVQGVQQVKRAGG-AMAGAVYVFVKPPSIEELETRLRGRGTE------TEDSLRRRLDLARRDM 141 (177)
Q Consensus 82 l~id~~G~~~lk~~~~-~~~~~~~IfI~pps~~~L~~RL~~Rg~e------s~e~I~~RL~~a~~e~ 141 (177)
.++++|++++.+... ......+|||.+|. +.+.+||.+|+++ +.+++ +|+..++.++
T Consensus 96 -~ividG~r~~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~~e~~-~~~~~~~~~l 159 (195)
T PRK08356 96 -NIAIDGVRSRGEVEAIKRMGGKVIYVEAKP-EIRFERLRRRGAEKDKGIKSFEDF-LKFDEWEEKL 159 (195)
T ss_pred -eEEEcCcCCHHHHHHHHhcCCEEEEEECCH-HHHHHHHHhcCCccccccccHHHH-HHHHHHHHHh
Confidence 244468887765210 00235789999875 9999999999876 44444 4454455443
No 17
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.85 E-value=1.2e-09 Score=94.44 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=91.7
Q ss_pred HHHHHhhhCCC--------ceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHH
Q psy9156 2 YSILFFQDYPD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73 (177)
Q Consensus 2 l~~~Ll~~~p~--------~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~ 73 (177)
|+..|.+.++. .+...+++||++|+++|.+|++|||++..+|.+....+.|++++ ++.|+++
T Consensus 20 la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a----------~~~i~~i 89 (307)
T PRK00091 20 LAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA----------LAAIADI 89 (307)
T ss_pred HHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH----------HHHHHHH
Confidence 45566666543 26678899999999999999999999999999999999999876 7889999
Q ss_pred HhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHh
Q psy9156 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE-TEDSLRRRLDLARRDM 141 (177)
Q Consensus 74 ~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e-s~e~I~~RL~~a~~e~ 141 (177)
+++|+++|++ -|...+.+.. ...+ +..||+.+.+++||..+..+ ..+.+-.+|.....+.
T Consensus 90 ~~~gk~pIlv---GGt~~Y~~al---~~g~--~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~ 150 (307)
T PRK00091 90 LARGKLPILV---GGTGLYIKAL---LEGL--SPLPPADPELRAELEALAAEEGWEALHAELAEIDPEA 150 (307)
T ss_pred HhCCCCEEEE---CcHHHHHHHh---ccCC--CCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHH
Confidence 9999999986 3444434554 3332 26788889999999887543 3456666666654443
No 18
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.87 E-value=9.8e-06 Score=63.69 Aligned_cols=66 Identities=24% Similarity=0.211 Sum_probs=50.5
Q ss_pred eCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHH---HcCCCCceEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 58 FAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKR---AGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 58 ~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~---~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
..++.||+....+...+++|.+||++.+..+...+++ .+.. ...+.|++.+|. +++.+|+.+|++.
T Consensus 66 ~~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~-~~l~~R~~~R~~~ 134 (175)
T cd00227 66 EFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPG-EVAEGRETARGDR 134 (175)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCH-HHHHHHHHhcCCc
Confidence 4557899999999999999999999987654444433 2211 357889999875 9999999999854
No 19
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.63 E-value=4.7e-05 Score=65.41 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHhhhCCC--------ceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeC--CceeeecHHHHH
Q psy9156 2 YSILFFQDYPD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFA--ANLYGTSRAAVE 71 (177)
Q Consensus 2 l~~~Ll~~~p~--------~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~--G~~YGt~~~~i~ 71 (177)
|+..|.+.++. .+....+.+|++|+++|.+|+.|||++ ++++.+.. |++|+...+.|+
T Consensus 15 la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid------------~~~~~~~~~v~~f~~~a~~~i~ 82 (287)
T TIGR00174 15 LAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLID------------ILDPSESYSAADFQTLALNAIA 82 (287)
T ss_pred HHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEE------------EechhheEcHHHHHHHHHHHHH
Confidence 45566666542 255667999999999999999999998 44444433 889999999999
Q ss_pred HHHhCCCeEEEEecH
Q psy9156 72 AVINSGKTCVLDIEV 86 (177)
Q Consensus 72 ~~~~~gk~~il~id~ 86 (177)
+++++|+++|+..-.
T Consensus 83 ~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 83 DITARGKIPLLVGGT 97 (287)
T ss_pred HHHhCCCCEEEEcCc
Confidence 999999998885433
No 20
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.08 E-value=0.0012 Score=52.30 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=73.7
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHH--cCCeEEEEE---eCCceeeecHHHHHHHHhC
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIA--AGEFLEHAE---FAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~--~g~FlE~~~---~~G~~YGt~~~~i~~~~~~ 76 (177)
+++.|.+.+.. .+ ...++|+.|+ ++. ..+.|.+.+. .+.+..++. +..+.|+.....+...+++
T Consensus 19 ~~~~L~~~l~~-~~-~~~~~~~~p~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~ 87 (205)
T PRK00698 19 QIELLKELLEQ-QG-RDVVFTREPG-GTP--------LGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKPALAR 87 (205)
T ss_pred HHHHHHHHHHH-cC-CceeEeeCCC-CCh--------HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44555554322 12 3456788886 332 2367777766 244444433 2366788887778888889
Q ss_pred CCeEEEE------ecHH---------HHHHHHHHcCC--CCceEEEEEcCCCHHHHHHHHhhcCCCCHH-----HHHHHH
Q psy9156 77 GKTCVLD------IEVQ---------GVQQVKRAGGA--MAGAVYVFVKPPSIEELETRLRGRGTETED-----SLRRRL 134 (177)
Q Consensus 77 gk~~il~------id~~---------G~~~lk~~~~~--~~~~~~IfI~pps~~~L~~RL~~Rg~es~e-----~I~~RL 134 (177)
|+++|+| +..+ -...+...... .++ ++||+..|. +++.+||.+|+..+.. +..+++
T Consensus 88 g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd-~~i~l~~~~-~~~~~Rl~~R~~~~~~~~~~~~~~~~~ 165 (205)
T PRK00698 88 GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPD-LTLYLDVPP-EVGLARIRARGELDRIEQEGLDFFERV 165 (205)
T ss_pred CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCC-EEEEEeCCH-HHHHHHHHhcCCcchhhhhhHHHHHHH
Confidence 9999887 2222 23344433211 134 678887765 8999999999843211 345566
Q ss_pred HHHHHHh
Q psy9156 135 DLARRDM 141 (177)
Q Consensus 135 ~~a~~e~ 141 (177)
..+..++
T Consensus 166 ~~~y~~~ 172 (205)
T PRK00698 166 REGYLEL 172 (205)
T ss_pred HHHHHHH
Confidence 5544444
No 21
>KOG3209|consensus
Probab=96.99 E-value=0.00017 Score=68.13 Aligned_cols=53 Identities=34% Similarity=0.459 Sum_probs=50.2
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHH
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRA 68 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~ 68 (177)
+.+.++||||+++.+|++ ||.|.+...|..+-..|-|+|+..|.+|||||++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~--d~~fs~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209|consen 63 YLFQVPCTTRRILEGEVP--DYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred cccccccccccccccccC--ccccccchhhheeeecceeecccCcccCCCCCCCC
Confidence 457899999999999999 99999999999999999999999999999999966
No 22
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.30 E-value=0.0037 Score=50.74 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKN 154 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~ 154 (177)
.+|+|.+ |.+++.+||.+|+..+.+++.+|++....+.+....++....|+
T Consensus 136 ~ii~V~a-~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~ 186 (208)
T PRK14731 136 FIVVVAA-DTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYNN 186 (208)
T ss_pred eEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHHHhCCEEEECC
Confidence 4566665 56999999999998899999999987644444444444444443
No 23
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.64 E-value=0.029 Score=41.65 Aligned_cols=103 Identities=19% Similarity=0.293 Sum_probs=58.9
Q ss_pred eEeeCHHHHHHHHHcCCeEEE---EEeCCceeeecHHHHHHHHhCCCeEEEEec---HHHHHHHH---HHcCCCCceEEE
Q psy9156 35 YHFVTRADMEERIAAGEFLEH---AEFAANLYGTSRAAVEAVINSGKTCVLDIE---VQGVQQVK---RAGGAMAGAVYV 105 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~---~~~~G~~YGt~~~~i~~~~~~gk~~il~id---~~G~~~lk---~~~~~~~~~~~I 105 (177)
+.+++.+++...+.....-.. +......+..-.+.+...+..|..+|++-. ......+. +..+ ....+|
T Consensus 25 ~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~--~~~~~v 102 (143)
T PF13671_consen 25 AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHG--YPVRVV 102 (143)
T ss_dssp EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCT--EEEEEE
T ss_pred CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcC--CeEEEE
Confidence 567888888877655332211 112223344555677788899999888732 22222222 3332 467888
Q ss_pred EEcCCCHHHHHHHHhhcCCCCH---HHHHHHHHHHHHH
Q psy9156 106 FVKPPSIEELETRLRGRGTETE---DSLRRRLDLARRD 140 (177)
Q Consensus 106 fI~pps~~~L~~RL~~Rg~es~---e~I~~RL~~a~~e 140 (177)
++.+| .+++.+|+..|+...+ +.....+.+..+.
T Consensus 103 ~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (143)
T PF13671_consen 103 YLDAP-EETLRERLAQRNREGDKRFEVPEEVFDRMLAR 139 (143)
T ss_dssp EECHH-HHHHHHHHHTTHCCCTTS----HHHHHHHHHH
T ss_pred EEECC-HHHHHHHHHhcCCcccccccCcHHHHHHHHHh
Confidence 88875 5999999999987532 2344444444333
No 24
>PRK04040 adenylate kinase; Provisional
Probab=94.61 E-value=0.087 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=34.7
Q ss_pred CceEEEEEcCCCHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHhh
Q psy9156 100 AGAVYVFVKPPSIEELETRLRG----RGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~----Rg~es~e~I~~RL~~a~~e~~ 142 (177)
++.++++..||+ +.+++|+.. |+.++.+.|++|++.++.+..
T Consensus 111 pd~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~ 156 (188)
T PRK04040 111 PDVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAM 156 (188)
T ss_pred CCEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 677777777776 889999964 888999999999999988754
No 25
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.36 E-value=0.11 Score=41.08 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=34.5
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhh
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSY 151 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~ 151 (177)
.+|+|.+| .+...+||.+|+..+.+++.+|++......+....++...
T Consensus 126 ~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~~~~ad~vI 173 (188)
T TIGR00152 126 RVIVVDVS-PQLQLERLMQRDNLTEEEVQKRLASQMDIEERLARADDVI 173 (188)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEE
Confidence 56788876 5999999999987899999999988643333333344433
No 26
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.79 E-value=0.18 Score=40.31 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=53.8
Q ss_pred eCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCC---CeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHH
Q psy9156 38 VTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSG---KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEE 114 (177)
Q Consensus 38 vs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~g---k~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~ 114 (177)
+++..+.+.+-++...--+--+..++.+. ..+.+.+.+. ..+++++-.-=-..+... ++ .+|+|.+| .+.
T Consensus 65 idr~~L~~~vf~~~~~~~~L~~i~hP~v~-~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~----~D-~vi~V~a~-~e~ 137 (194)
T PRK00081 65 LDRAKLRELVFSDPEARKKLEAILHPLIR-EEILEQLQEAESSPYVVLDIPLLFENGLEKL----VD-RVLVVDAP-PET 137 (194)
T ss_pred cCHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHcccCCEEEEEehHhhcCCchhh----CC-eEEEEECC-HHH
Confidence 56666666554444332222233455555 3455544443 456665433111111112 33 56788876 488
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 115 LETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 115 L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
..+||.+|+..+.+++..|+...
T Consensus 138 ~~~Rl~~R~~~s~e~~~~ri~~Q 160 (194)
T PRK00081 138 QLERLMARDGLSEEEAEAIIASQ 160 (194)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh
Confidence 99999999878999999999854
No 27
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.60 E-value=0.65 Score=39.04 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=56.0
Q ss_pred ceEeeCHHHHHHHHHcCCeEEEEEeC---C-ceeeecHHHHHHHHhCCCeEEEEecHH---H---HHHHHHHcCCCCceE
Q psy9156 34 AYHFVTRADMEERIAAGEFLEHAEFA---A-NLYGTSRAAVEAVINSGKTCVLDIEVQ---G---VQQVKRAGGAMAGAV 103 (177)
Q Consensus 34 dY~Fvs~~eF~~~i~~g~FlE~~~~~---G-~~YGt~~~~i~~~~~~gk~~il~id~~---G---~~~lk~~~~~~~~~~ 103 (177)
.+.++|.+++.+++....-..+..+. + ..+..-.+.+...+.+|..+|++.... - ...+.+..+ ....
T Consensus 28 ~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~--~~~~ 105 (300)
T PHA02530 28 KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELG--AEFE 105 (300)
T ss_pred CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcC--CeEE
Confidence 35677878887765432110000000 0 011122334556678899888874432 2 222222232 4566
Q ss_pred EEEEcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHH
Q psy9156 104 YVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLAR 138 (177)
Q Consensus 104 ~IfI~pps~~~L~~RL~~Rg~--es~e~I~~RL~~a~ 138 (177)
+|++.+ +.+++.+|+.+|+. .+++.|+++..+.+
T Consensus 106 ~v~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~ 141 (300)
T PHA02530 106 EKVFDV-PVEELVKRNRKRGERAVPEDVLRSMFKQMK 141 (300)
T ss_pred EEEeCC-CHHHHHHHHHccCcCCCCHHHHHHHHHHHH
Confidence 788887 57999999999963 35777885544444
No 28
>KOG3580|consensus
Probab=93.29 E-value=0.11 Score=49.19 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=42.5
Q ss_pred cHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHH---HHHHHh
Q psy9156 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEE---LETRLR 120 (177)
Q Consensus 66 ~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~---L~~RL~ 120 (177)
....|+.++++.|+.++|+.|+++..|.-.- ..|++||..|.|..- |++||-
T Consensus 676 rL~TvrqiieqDKHALLDVTP~AvdrLNY~Q---wypIVvff~PdSrqgvktmRqrL~ 730 (1027)
T KOG3580|consen 676 RLNTVRQIIEQDKHALLDVTPKAVDRLNYTQ---WYPIVVFFNPDSRQGVKTMRQRLA 730 (1027)
T ss_pred EehhhHHHHhcccchhhccCHHHHhhhccce---eeeEEEEeCCcchHHHHHHHHHhC
Confidence 4577899999999999999999999886544 679999999998655 445654
No 29
>PRK06762 hypothetical protein; Provisional
Probab=93.04 E-value=1.4 Score=33.68 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHhCCCeEEEEecH--H----HHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q psy9156 70 VEAVINSGKTCVLDIEV--Q----GVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT---ETEDSLRRRLD 135 (177)
Q Consensus 70 i~~~~~~gk~~il~id~--~----G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~---es~e~I~~RL~ 135 (177)
++..++.|.+++++-.. . -.+.+.+.++ .....||+.+| .++..+|+.+|+. .+++.++.+++
T Consensus 61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~--~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~ 132 (166)
T PRK06762 61 VRYGLGHCEFVILEGILNSDRYGPMLKELIHLFR--GNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWN 132 (166)
T ss_pred HHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcC--CCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHh
Confidence 34457788888875432 1 1344544442 34578899887 4889999999965 23555665553
No 30
>PRK00098 GTPase RsgA; Reviewed
Probab=92.95 E-value=0.031 Score=47.86 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHHhhhCCCceeeeee-------eecCCCCCCCCC------------CcceEeeCHHHHHHHHHc-CCeEEEEEeCC-
Q psy9156 2 YSILFFQDYPDRFGFSVS-------HTTRGPRPGEVD------------GKAYHFVTRADMEERIAA-GEFLEHAEFAA- 60 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is-------~TTR~~R~gE~~------------G~dY~Fvs~~eF~~~i~~-g~FlE~~~~~G- 60 (177)
|++.|+...... .-.++ ||||.++..+.+ +.+|.+++.+++.+.... ..|.++..|++
T Consensus 180 lin~l~~~~~~~-~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~c 258 (298)
T PRK00098 180 LLNALAPDLELK-TGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRNC 258 (298)
T ss_pred HHHHHhCCcCCC-CcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 567776554332 22343 799988776655 667888999998887755 66777777777
Q ss_pred ceeeecHHHHHHHHhCCCe
Q psy9156 61 NLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~gk~ 79 (177)
..||+|.-+|++++++|++
T Consensus 259 ~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 259 THLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred cCCCCCCChHHHHHHcCCC
Confidence 5799999999999999963
No 31
>PRK14530 adenylate kinase; Provisional
Probab=92.26 E-value=0.39 Score=38.74 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=33.5
Q ss_pred eEEEEEcCCCHHHHHH----HHhhcCCCCHHHHHHHHHHHHHHhh
Q psy9156 102 AVYVFVKPPSIEELET----RLRGRGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~----RL~~Rg~es~e~I~~RL~~a~~e~~ 142 (177)
.+.+++.||+.+.+.. ||.+|++++++.|++||....++..
T Consensus 135 ~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~ 179 (215)
T PRK14530 135 NYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTE 179 (215)
T ss_pred ccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4667778887666665 9999999999999999999887653
No 32
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.97 E-value=1 Score=34.71 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=44.7
Q ss_pred HHHHHhCCCeEEEEecHHHHHHHH---HHcCCCCceEEEEEcCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHH
Q psy9156 70 VEAVINSGKTCVLDIEVQGVQQVK---RAGGAMAGAVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRD 140 (177)
Q Consensus 70 i~~~~~~gk~~il~id~~G~~~lk---~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~------es~e~I~~RL~~a~~e 140 (177)
+...+..|+.+|+|--+....+.. .... ..-++|++..| .+.+.+|+.+|+. ++++.+.+|+....++
T Consensus 75 ~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~--~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~ 151 (188)
T TIGR01360 75 MVAALGTSKGFLIDGYPREVKQGEEFERRIG--PPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKA 151 (188)
T ss_pred HHcccCcCCeEEEeCCCCCHHHHHHHHHcCC--CCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 333345678888877654443333 2331 22357777776 4899999988874 3678899999887654
Q ss_pred h
Q psy9156 141 M 141 (177)
Q Consensus 141 ~ 141 (177)
.
T Consensus 152 ~ 152 (188)
T TIGR01360 152 T 152 (188)
T ss_pred h
Confidence 3
No 33
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=90.92 E-value=0.27 Score=41.28 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=38.8
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKN 154 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~ 154 (177)
-.+|+|.+| .++..+||.+|+..+.+++++|++......+....++....|+
T Consensus 138 D~iv~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 138 SASVVVSCS-EERQIERLRKRNGFSKEEALQRIGSQMPLEEKRRLADYIIEND 189 (244)
T ss_pred CeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECC
Confidence 357888775 5899999999977799999999977444445555666666555
No 34
>PRK14531 adenylate kinase; Provisional
Probab=90.44 E-value=0.63 Score=36.61 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=40.9
Q ss_pred CCeEEEEecHHHHHHHHH------HcCCCCceEEEEEcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHh
Q psy9156 77 GKTCVLDIEVQGVQQVKR------AGGAMAGAVYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDM 141 (177)
Q Consensus 77 gk~~il~id~~G~~~lk~------~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~--es~e~I~~RL~~a~~e~ 141 (177)
++.+|+|--|....+.+. ..+. .-..+|++..|. +++.+||.+|++ ++++.|.+||+......
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~-~~~~vi~l~~~~-~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~ 149 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQ-PIEAVVLLELDD-AVLIERLLARGRADDNEAVIRNRLEVYREKT 149 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCC-CCCeEEEEECCH-HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 445677765555444332 1110 113468888765 999999998875 56788999998886644
No 35
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.03 E-value=0.76 Score=37.18 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=38.9
Q ss_pred HHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 70 VEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 70 i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
++..+.+|..++++.-......+..... ....++++..++.+.+++|+..|+.+
T Consensus 90 a~~~l~~G~sVIvEgv~l~p~~~~~~~~--~~v~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 90 IRRALLNGEDLVIESLYFHPPMIDENRT--NNIRAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHcCCCEEEEecCcCHHHHHHHHh--cCeEEEEEEeCCHHHHHHHHHHHhhc
Confidence 6678889999999865444344433322 35677888888889999999999853
No 36
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.89 E-value=2 Score=33.04 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=38.9
Q ss_pred CceeeecHHHHHHHHhCCCeEEEE------e---------cHHHHHHHHHHcCCCC-ceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 60 ANLYGTSRAAVEAVINSGKTCVLD------I---------EVQGVQQVKRAGGAMA-GAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 60 G~~YGt~~~~i~~~~~~gk~~il~------i---------d~~G~~~lk~~~~~~~-~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
.+.|....+.+...+..|..+|+| + +......+.......+ .-++||+.+|. +++.+|+.+|+
T Consensus 69 ~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~ 147 (200)
T cd01672 69 ADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDP-EVGLARIEARG 147 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcC
Confidence 445555555566667788888887 1 1223333333221111 23567777764 99999999998
Q ss_pred CC
Q psy9156 124 TE 125 (177)
Q Consensus 124 ~e 125 (177)
..
T Consensus 148 ~~ 149 (200)
T cd01672 148 RD 149 (200)
T ss_pred Cc
Confidence 64
No 37
>PLN02840 tRNA dimethylallyltransferase
Probab=89.78 E-value=0.16 Score=45.94 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=47.6
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeC-CceeeecHHHHHHHHhCCCeEEEEe
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFA-ANLYGTSRAAVEAVINSGKTCVLDI 84 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~-G~~YGt~~~~i~~~~~~gk~~il~i 84 (177)
+..-+..+|++|.+.|.+|+.||+++--+..+ .|+ |.|+....+.|++++++|+++|+..
T Consensus 57 vYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-----------~ySv~~F~~~A~~~I~~i~~rgkiPIvVG 117 (421)
T PLN02840 57 VYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-----------DYSVGAFFDDARRATQDILNRGRVPIVAG 117 (421)
T ss_pred eecceeEEcCCCCHHHHcCCCeEeEeecCCCC-----------ceeHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 45677889999999999999999986655433 233 6677778889999999999988854
No 38
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=88.60 E-value=0.83 Score=35.84 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=28.8
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 138 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~ 138 (177)
.+|+|.+|. +...+|+..|+..+.+++.+|+....
T Consensus 124 ~vv~V~a~~-~~ri~Rl~~Rd~~s~~~~~~r~~~Q~ 158 (179)
T cd02022 124 RVIVVDAPP-EIQIERLMKRDGLSEEEAEARIASQM 158 (179)
T ss_pred eEEEEECCH-HHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 568888875 88888999997679999999998753
No 39
>PRK01184 hypothetical protein; Provisional
Probab=88.05 E-value=2.6 Score=32.75 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=38.1
Q ss_pred CCeEEEEe--cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC----CCHHHHHHHHHHH
Q psy9156 77 GKTCVLDI--EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT----ETEDSLRRRLDLA 137 (177)
Q Consensus 77 gk~~il~i--d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~----es~e~I~~RL~~a 137 (177)
+..+|++. .+.-+..+++.++ ....+|+|.+|. +...+||..|+. .+.+++.+|++..
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~--~~~~~i~v~~~~-~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q 143 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFP--EDFILIAIHAPP-EVRFERLKKRGRSDDPKSWEELEERDERE 143 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC--cccEEEEEECCH-HHHHHHHHHcCCCCChhhHHHHHHHHHHH
Confidence 56677765 3333445555653 245778888764 889999999974 2457788777653
No 40
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.73 E-value=5.4 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=37.2
Q ss_pred HHHHHHhCCCeEEEEecH---HHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCC--CHHHHHHHHH
Q psy9156 69 AVEAVINSGKTCVLDIEV---QGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE--TEDSLRRRLD 135 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~---~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e--s~e~I~~RL~ 135 (177)
.+...+..|+.+|++... .....++... ....+|++.+| .+++.+|+..|+.. +.+.++.++.
T Consensus 62 ~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~---~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~ 129 (163)
T TIGR01313 62 ASTAAAAKNKVGIITCSALKRHYRDILREAE---PNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFA 129 (163)
T ss_pred HHHHHHhcCCCEEEEecccHHHHHHHHHhcC---CCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 445566778777666542 1122233222 45667888876 58999999999742 2344555443
No 41
>PRK00279 adk adenylate kinase; Reviewed
Probab=85.80 E-value=5.2 Score=32.10 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=16.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhh
Q psy9156 122 RGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 122 Rg~es~e~I~~RL~~a~~e~~ 142 (177)
|.+++++.|++||.......+
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~ 180 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTA 180 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhH
Confidence 356788999999999887654
No 42
>PRK14526 adenylate kinase; Provisional
Probab=85.61 E-value=3.7 Score=33.50 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhh
Q psy9156 122 RGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 122 Rg~es~e~I~~RL~~a~~e~~ 142 (177)
|.+++++.|++||+...++..
T Consensus 155 R~DD~~e~i~~Rl~~y~~~t~ 175 (211)
T PRK14526 155 RKDDKEESLKTRLQEYKLQTK 175 (211)
T ss_pred cCCCCHHHHHHHHHHHHHhhh
Confidence 556789999999999887654
No 43
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=85.39 E-value=3.1 Score=31.51 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.1
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
+.|||.+| .+...+|+.+|+..+.++..+++..
T Consensus 94 ~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~ 126 (171)
T TIGR02173 94 VKIWLKAP-LEVRARRIAKREGKSLTVARSETIE 126 (171)
T ss_pred EEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHH
Confidence 68999986 5888899999987788888877754
No 44
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=85.23 E-value=1 Score=36.28 Aligned_cols=52 Identities=15% Similarity=-0.002 Sum_probs=35.5
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKN 154 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~ 154 (177)
-.+|||.+|. +...+||.+|+..+.+++..|+..-....+....++....|+
T Consensus 123 D~vi~V~a~~-e~r~~RL~~R~g~s~e~a~~ri~~Q~~~~~k~~~aD~vI~N~ 174 (196)
T PRK14732 123 DATVTVDSDP-EESILRTISRDGMKKEDVLARIASQLPITEKLKRADYIVRND 174 (196)
T ss_pred CEEEEEECCH-HHHHHHHHHcCCCCHHHHHHHHHHcCCHHHHHHhCCEEEECC
Confidence 3678898875 888899999977799999999976322223333444444333
No 45
>PRK14527 adenylate kinase; Provisional
Probab=84.85 E-value=2.2 Score=33.57 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=30.2
Q ss_pred EEEEEcCCCHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHhh
Q psy9156 103 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg------~es~e~I~~RL~~a~~e~~ 142 (177)
.+|++..|. +.+.+|+.+|+ +++++.+++|++...++.+
T Consensus 114 ~vi~l~~~~-~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~ 158 (191)
T PRK14527 114 AVVLLEVPD-EELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQ 158 (191)
T ss_pred EEEEEECCH-HHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhH
Confidence 457777765 89999999885 3567889999988876554
No 46
>PLN02422 dephospho-CoA kinase
Probab=84.31 E-value=1.2 Score=37.23 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=35.1
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKN 154 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~ 154 (177)
-.+|+|.+| .+...+||.+|+..|.+++.+|++.-...-+....++....|+
T Consensus 127 D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~ 178 (232)
T PLN02422 127 KPVVVVWVD-PETQLERLMARDGLSEEQARNRINAQMPLDWKRSKADIVIDNS 178 (232)
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChhHHHhhCCEEEECC
Confidence 356888876 4899999999977899999999854322213334455555444
No 47
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=83.39 E-value=12 Score=28.80 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=46.7
Q ss_pred CCeEEEEecHHH---HHHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhcC-------------------------CCCH
Q psy9156 77 GKTCVLDIEVQG---VQQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGRG-------------------------TETE 127 (177)
Q Consensus 77 gk~~il~id~~G---~~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~Rg-------------------------~es~ 127 (177)
++.+|++--|.. +..+.+.... ....++|++..|. +.+.+||.+|+ ++++
T Consensus 77 ~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~ 155 (194)
T cd01428 77 KKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPD-EVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNE 155 (194)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCH
Confidence 455777653332 2333333210 0234567777764 88999998876 3567
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhcccccchhhhh
Q psy9156 128 DSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVEA 162 (177)
Q Consensus 128 e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~~ 162 (177)
+.+++|+.......+ .....|.+...-..+++
T Consensus 156 ~~i~~R~~~y~~~~~---~i~~~~~~~~~~~~id~ 187 (194)
T cd01428 156 ETIKKRLEVYKEQTA---PLIDYYKKKGKLVEIDG 187 (194)
T ss_pred HHHHHHHHHHHHhHH---HHHHHHHhCCCEEEEEC
Confidence 889999988876543 34444433333333333
No 48
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=83.37 E-value=1.3 Score=35.64 Aligned_cols=52 Identities=27% Similarity=0.189 Sum_probs=35.2
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKN 154 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~ 154 (177)
-.+|||.+| .++..+|+.+|+.-+.+++.+|++.-....+....++....|+
T Consensus 127 D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~ 178 (200)
T PRK14734 127 DLVVVVDVD-VEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLKAADIVVDNN 178 (200)
T ss_pred CeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEEECc
Confidence 367899986 4888899998855688999999976533333334444444333
No 49
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=81.80 E-value=4.6 Score=32.61 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=35.9
Q ss_pred eeeecHHHHHHHHh---CCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHH
Q psy9156 62 LYGTSRAAVEAVIN---SGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 133 (177)
Q Consensus 62 ~YGt~~~~i~~~~~---~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~R 133 (177)
.|=.-.+.+...++ ....+|++-...++-. . ++.++|.=. +.+.|.+||++||. +++.|..=
T Consensus 49 s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~----~---~dlVvVLR~--~p~~L~~RLk~RGy-~~eKI~EN 113 (180)
T COG1936 49 SVIVDVDKLRKRLEELLREGSGIVDSHLSHLLP----D---CDLVVVLRA--DPEVLYERLKGRGY-SEEKILEN 113 (180)
T ss_pred eEEeeHHHHHHHHHHHhccCCeEeechhhhcCC----C---CCEEEEEcC--CHHHHHHHHHHcCC-CHHHHHHH
Confidence 45555566666555 3456666444432221 1 344433333 45799999999995 77776643
No 50
>PRK14528 adenylate kinase; Provisional
Probab=81.46 E-value=3.8 Score=32.41 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=34.1
Q ss_pred eEEEEEcCCCHHHHHHHHhhc------CCCCHHHHHHHHHHHHHHhhhcchhhhhhc
Q psy9156 102 AVYVFVKPPSIEELETRLRGR------GTETEDSLRRRLDLARRDMSYGKDSLRSYG 152 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~R------g~es~e~I~~RL~~a~~e~~~~~~~~~~~~ 152 (177)
-.+|++..|. +.+.+||.+| .+++++.|.+||+....+.. +....|.
T Consensus 109 d~vI~Ld~~~-~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~---pv~~~y~ 161 (186)
T PRK14528 109 DKAINLEVPD-GELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTL---PLLDFYA 161 (186)
T ss_pred CEEEEEECCH-HHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhH---HHHHHHH
Confidence 3567777765 8899999876 25679999999999876654 4444453
No 51
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=81.41 E-value=6.3 Score=31.51 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCeEEEEecHHHHHHH---HHHcCCCCceEEEEEcCCCHHHHHHHHhhc-------------------------------
Q psy9156 77 GKTCVLDIEVQGVQQV---KRAGGAMAGAVYVFVKPPSIEELETRLRGR------------------------------- 122 (177)
Q Consensus 77 gk~~il~id~~G~~~l---k~~~~~~~~~~~IfI~pps~~~L~~RL~~R------------------------------- 122 (177)
++..|+|--|....+. .+.... ..-.+|++..|. +.+.+|+.+|
T Consensus 78 ~~~~ilDGfPrt~~Qa~~l~~~~~~-~~~~vi~L~~~~-~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~ 155 (210)
T TIGR01351 78 ENGFILDGFPRTLSQAEALDALLKE-KIDAVIELDVPD-EELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLI 155 (210)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHhcc-CCCEEEEEECCH-HHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccc
Confidence 3456666544444333 222210 013566666665 6777777665
Q ss_pred --CCCCHHHHHHHHHHHHHHhh
Q psy9156 123 --GTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 123 --g~es~e~I~~RL~~a~~e~~ 142 (177)
.+++++.|++||+...++..
T Consensus 156 ~R~dD~~e~i~~Rl~~y~~~~~ 177 (210)
T TIGR01351 156 QREDDTEEVVKKRLEVYKEQTE 177 (210)
T ss_pred cCCCCCHHHHHHHHHHHHHhhH
Confidence 34678899999999887654
No 52
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.09 E-value=13 Score=30.55 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=40.4
Q ss_pred cHHHHHHHHhCCCeEEEEecH--HHH-HHHH---HHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCH-HHHHHHHH
Q psy9156 66 SRAAVEAVINSGKTCVLDIEV--QGV-QQVK---RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE-DSLRRRLD 135 (177)
Q Consensus 66 ~~~~i~~~~~~gk~~il~id~--~G~-~~lk---~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~-e~I~~RL~ 135 (177)
....+...+..|..+|+|-.. .|. ..+. +..+ ....+||+.+| .+.+.+|...|+...+ +.+.+...
T Consensus 57 ~~~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~--~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~~~i~~l~~ 130 (249)
T TIGR03574 57 TLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYN--KNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYE 130 (249)
T ss_pred HHHHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCC--CCEEEEEecCC-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 345677888889887776532 122 1222 2222 45677888876 5899999999986433 34444433
No 53
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=80.61 E-value=5.8 Score=29.82 Aligned_cols=90 Identities=18% Similarity=0.311 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHh---CCCeEEEEecHHHHHHHHHHcC----CCCce-EEEEEcCCCH
Q psy9156 41 ADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVIN---SGKTCVLDIEVQGVQQVKRAGG----AMAGA-VYVFVKPPSI 112 (177)
Q Consensus 41 ~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~---~gk~~il~id~~G~~~lk~~~~----~~~~~-~~IfI~pps~ 112 (177)
.++.+.+++|+.+--. +..+-+...+. ..+..|+|-=|....+...... ....| .+|++..|+
T Consensus 43 ~~i~~~l~~g~~vp~~--------~v~~ll~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~- 113 (151)
T PF00406_consen 43 KQIQEYLDNGELVPDE--------LVIELLKERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD- 113 (151)
T ss_dssp HHHHHHHHTTSS--HH--------HHHHHHHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-
T ss_pred HHHHHHHHhhccchHH--------HHHHHHHHHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-
Confidence 4677777888766210 11122233333 3467888886666655543211 01333 677778766
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy9156 113 EELETRLRGRGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 113 ~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~ 142 (177)
+.+.+|+.+ ++++.+++||+...+...
T Consensus 114 ~~~~~R~~~---d~~~~i~~Rl~~y~~~~~ 140 (151)
T PF00406_consen 114 ETLIERLSQ---DNEEVIKKRLEEYRENTE 140 (151)
T ss_dssp HHHHHHHHT---GSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccc---CCHHHHHHHHHHHHHHHH
Confidence 899999987 688999999999877653
No 54
>PLN02674 adenylate kinase
Probab=80.30 E-value=3.9 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhh
Q psy9156 122 RGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 122 Rg~es~e~I~~RL~~a~~e~~ 142 (177)
|.+++++.|++||+...++..
T Consensus 191 R~DD~~e~i~~RL~~Y~~~t~ 211 (244)
T PLN02674 191 RKDDTAAVLKSRLEAFHKQTE 211 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHhH
Confidence 456789999999999886654
No 55
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=78.45 E-value=27 Score=27.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.6
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTET 126 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es 126 (177)
-++||+..| .+.+.+|+..|+..+
T Consensus 129 d~~i~l~~~-~~~~~~R~~~r~~~~ 152 (195)
T TIGR00041 129 DLTIYLDID-PEVALERLRKRGELD 152 (195)
T ss_pred CEEEEEeCC-HHHHHHHHHhcCCcc
Confidence 467888875 588999999998643
No 56
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=77.51 E-value=2.7 Score=33.72 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=27.3
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
.+|||.+|. +...+||.+|+..+.+++.+|+..
T Consensus 128 ~ii~V~a~~-e~r~~Rl~~R~g~s~e~~~~ri~~ 160 (195)
T PRK14730 128 EIWVVDCSP-EQQLQRLIKRDGLTEEEAEARINA 160 (195)
T ss_pred EEEEEECCH-HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 467888764 888899999976789999999865
No 57
>PRK14532 adenylate kinase; Provisional
Probab=76.92 E-value=17 Score=28.24 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=29.1
Q ss_pred EEEEEcCCCHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHhh
Q psy9156 103 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg------~es~e~I~~RL~~a~~e~~ 142 (177)
.+|++..|. +.+.+|+.+|. +++++.+.+|+.....+..
T Consensus 109 ~vi~L~v~~-~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~ 153 (188)
T PRK14532 109 VVIRLKVDD-EALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTA 153 (188)
T ss_pred EEEEEECCH-HHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 578888775 88999998774 3457788999988766553
No 58
>PRK02496 adk adenylate kinase; Provisional
Probab=76.91 E-value=6.5 Score=30.54 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=30.1
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDM 141 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~--es~e~I~~RL~~a~~e~ 141 (177)
..+|++.+| .+.+.+|+..|++ ++++.+++|++...++.
T Consensus 109 ~~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~ 149 (184)
T PRK02496 109 ERVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEVYREQT 149 (184)
T ss_pred CEEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 356777776 5899999999975 45788999998887644
No 59
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=76.64 E-value=5.3 Score=31.85 Aligned_cols=88 Identities=25% Similarity=0.364 Sum_probs=52.0
Q ss_pred eEeeCHHHHHHHHH-----cCCeEEEEE-------eCCceeeecHHHHHHHHhCCCeEEEEe---cHHH-HHHHHHHcCC
Q psy9156 35 YHFVTRADMEERIA-----AGEFLEHAE-------FAANLYGTSRAAVEAVINSGKTCVLDI---EVQG-VQQVKRAGGA 98 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~-----~g~FlE~~~-------~~G~~YGt~~~~i~~~~~~gk~~il~i---d~~G-~~~lk~~~~~ 98 (177)
|+.++-+.|..++- .+.=++|.. .....|-.-...|......|.++|+|- ++.. ...+++.+..
T Consensus 29 ~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~ 108 (174)
T PF07931_consen 29 WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAG 108 (174)
T ss_dssp EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTT
T ss_pred eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCC
Confidence 44566777776432 233444431 111235555677888889999999882 2222 3344454421
Q ss_pred CCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 99 MAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 99 ~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..+.+|-|.+| .+++++|-+.||+
T Consensus 109 -~~vl~VgV~Cp-leil~~RE~~RgD 132 (174)
T PF07931_consen 109 -LPVLFVGVRCP-LEILERRERARGD 132 (174)
T ss_dssp -S-EEEEEEE---HHHHHHHHHHHTS
T ss_pred -CceEEEEEECC-HHHHHHHHHhcCC
Confidence 67888999987 6999999999996
No 60
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.03 E-value=8.9 Score=30.87 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCeEEEEecHH----HHHHHHHHcCCCCceEEEEEcCCCHHHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDIEVQ----GVQQVKRAGGAMAGAVYVFVKPPSIEELETR 118 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~----G~~~lk~~~~~~~~~~~IfI~pps~~~L~~R 118 (177)
+.|++++..++++|..+... .+..+++.. .+++||+|-+.+.+-.+
T Consensus 121 ~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~-----~v~v~lt~~NR~~i~~~ 170 (179)
T COG1618 121 EAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLG-----GVYVFLTPENRNRILNE 170 (179)
T ss_pred HHHHHHhcCCCcEEEEEecccCChHHHHhhhcC-----CEEEEEccchhhHHHHH
Confidence 56777888888888888776 666776554 46677888776654433
No 61
>KOG3347|consensus
Probab=74.38 E-value=5.3 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHH
Q psy9156 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRL 134 (177)
Q Consensus 67 ~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL 134 (177)
.+.++..+.+|.. | +|..|.--..+.. ++.++|.=. |. +.|-.||..||- ++..|+.-+
T Consensus 66 ~D~Le~~m~~Gg~-I--VDyHgCd~Fperw---fdlVvVLr~-~~-s~LY~RL~sRgY-~e~Ki~eNi 124 (176)
T KOG3347|consen 66 LDELEPLMIEGGN-I--VDYHGCDFFPERW---FDLVVVLRT-PN-SVLYDRLKSRGY-SEKKIKENI 124 (176)
T ss_pred HHHHHHHHhcCCc-E--EeecccCccchhh---eeEEEEEec-Cc-hHHHHHHHHcCC-CHHHHhhhc
Confidence 3556666666653 3 4777877777777 776655544 44 799999999994 776666544
No 62
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=72.76 E-value=9.6 Score=29.31 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=38.8
Q ss_pred CCeEEEEecHHHHHHHH---HHcCC-CCceEEEEEcCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHH
Q psy9156 77 GKTCVLDIEVQGVQQVK---RAGGA-MAGAVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRD 140 (177)
Q Consensus 77 gk~~il~id~~G~~~lk---~~~~~-~~~~~~IfI~pps~~~L~~RL~~Rg~------es~e~I~~RL~~a~~e 140 (177)
++.+|+|--|....+.. +.... ....++|++..|. +.+.+|+.+|+. ++.+.+++|++...+.
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~-~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~ 148 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPE-EVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQ 148 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHH
Confidence 55678876544332222 22110 0123478888765 889999999864 3678899999876654
No 63
>PRK13946 shikimate kinase; Provisional
Probab=72.32 E-value=31 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..++|||..| .+.+.+|+..|..
T Consensus 103 ~~~~v~L~a~-~e~~~~Rl~~r~~ 125 (184)
T PRK13946 103 KGISVWLKAD-LDVLWERVSRRDT 125 (184)
T ss_pred CCEEEEEECC-HHHHHHHhcCCCC
Confidence 3578999986 5999999988864
No 64
>PRK06761 hypothetical protein; Provisional
Probab=70.72 E-value=19 Score=30.89 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=58.1
Q ss_pred HHHHHhhhCCCceeeeeeeecC--CCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCe
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTR--GPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR--~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~ 79 (177)
|++.|.+..... .+.+.+++. ++++.|..|..+ .+.++|...++....+- +.-+++.+..|..
T Consensus 19 la~~L~~~L~~~-g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~f~------------~~l~~~~~~~g~~ 83 (282)
T PRK06761 19 TAKMLNDILSQN-GIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPDFK------------EVLLKNVLKKGDY 83 (282)
T ss_pred HHHHHHHhcCcC-ceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhHHH------------HHHHHHHHHcCCe
Confidence 455666555432 234444433 347778877655 49999999987755332 4556667778877
Q ss_pred EEEEecHHHHHH-HHHHcCC-CC-ceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 80 CVLDIEVQGVQQ-VKRAGGA-MA-GAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 80 ~il~id~~G~~~-lk~~~~~-~~-~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+|+.. .+++. .+..+.. .+ ...+-++...+.+.+++|+..|.
T Consensus 84 ~i~~~--~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R~~~rw 128 (282)
T PRK06761 84 YLLPY--RKIKNEFGDQFSDELFNDISKNDIYELPFDKNTELITDRW 128 (282)
T ss_pred EEEEe--hhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHHHHHHH
Confidence 65522 22222 1222210 00 12234444666788888887663
No 65
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=70.62 E-value=4.9 Score=32.80 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=33.4
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcc
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGK 153 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~ 153 (177)
.+|+|.+|. +.-.+|+.+|+.-+.+++.+|++.--.+-+....++....|
T Consensus 131 ~vi~V~a~~-e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~~eek~~~aD~VI~N 180 (204)
T PRK14733 131 KVIVIKADL-ETRIRRLMERDGKNRQQAVAFINLQISDKEREKIADFVIDN 180 (204)
T ss_pred EEEEEECCH-HHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHhCCEEEEC
Confidence 467788764 88889999997678999999986532222333444444433
No 66
>PRK07667 uridine kinase; Provisional
Probab=70.34 E-value=18 Score=28.67 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=34.6
Q ss_pred CCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 76 SGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 76 ~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
.+.++|++.-.-.-..++. .--..|||.+|. +...+|+.+|...+.++.++|-..|
T Consensus 119 ~~~vvIvEG~~l~~~~~~~-----~~d~~v~V~~~~-~~~~~R~~~r~~~~~~~~~~r~~~a 174 (193)
T PRK07667 119 IVGVIVIEGVFLQRKEWRD-----FFHYMVYLDCPR-ETRFLRESEETQKNLSKFKNRYWKA 174 (193)
T ss_pred CCCEEEEEehhhhhhhHHh-----hceEEEEEECCH-HHHHHHHhcccHhHHHHHHHHhHHH
Confidence 4566777544421111222 235789999875 7788888888666676777775533
No 67
>PLN02459 probable adenylate kinase
Probab=70.30 E-value=24 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=22.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhc
Q psy9156 118 RLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG 152 (177)
Q Consensus 118 RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~ 152 (177)
||.+|.+++++.|++||+...++.. .....|.
T Consensus 193 ~L~~R~DD~~e~i~kRL~~Y~~~t~---pv~~~Y~ 224 (261)
T PLN02459 193 KLITRADDTEEVVKARLRVYKEESQ---PVEDFYR 224 (261)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhH---HHHHHHH
Confidence 4445667889999999999887643 4444553
No 68
>PF12728 HTH_17: Helix-turn-helix domain
Probab=68.60 E-value=15 Score=22.47 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=34.1
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCC
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGK 78 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk 78 (177)
+.=||...+.+++++|.+--+. .|..+-.++++|++.+++++
T Consensus 10 ~l~is~~tv~~~~~~g~i~~~~--~g~~~~~~~~~l~~~~~~~~ 51 (51)
T PF12728_consen 10 LLGISRSTVYRWIRQGKIPPFK--IGRKWRIPKSDLDRWLERRR 51 (51)
T ss_pred HHCcCHHHHHHHHHcCCCCeEE--eCCEEEEeHHHHHHHHHhCc
Confidence 3448999999999999887663 77778889999999887653
No 69
>PRK13975 thymidylate kinase; Provisional
Probab=67.32 E-value=56 Score=25.24 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=23.5
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHh
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTE--TEDSLRRRLDLARRDM 141 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~e--s~e~I~~RL~~a~~e~ 141 (177)
++||+.+| .+++.+|+.+|+++ ...+..+++...-.++
T Consensus 116 ~vi~L~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~ 155 (196)
T PRK13975 116 LVFLLDVD-IEEALKRMETRDKEIFEKKEFLKKVQEKYLEL 155 (196)
T ss_pred EEEEEcCC-HHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 56777764 69999999999743 2234444444443333
No 70
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=66.99 E-value=12 Score=29.26 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=39.6
Q ss_pred ceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 61 NLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
.++-...+-|.++.++| .||+ +...|.--+ +.. ++++.|||.+|. +.-.+|+.+|...+.++..+.+..-
T Consensus 80 ~~~~~~~~~i~~la~~~-~~Vi-~GR~a~~il-~~~---~~~l~V~i~A~~-~~Rv~ri~~~~~~s~~~A~~~i~~~ 149 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKG-NCVI-VGRCANYIL-RDI---PNVLHVFIYAPL-EFRVERIMEREGISEEEAEKLIKKE 149 (179)
T ss_dssp HHHHHHHHHHHHHHH----EEE-ESTTHHHHT-TT----TTEEEEEEEE-H-HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CEEE-EecCHhhhh-CCC---CCeEEEEEECCH-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444445666776666 4444 344344444 344 589999999864 7777788888555677766666544
No 71
>PRK13808 adenylate kinase; Provisional
Probab=65.79 E-value=14 Score=32.60 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=36.9
Q ss_pred EEEEecHHHHHHHHHH------cCCCCceEEEEEcCCCHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHH
Q psy9156 80 CVLDIEVQGVQQVKRA------GGAMAGAVYVFVKPPSIEELETRLRGR------------GTETEDSLRRRLDLARRD 140 (177)
Q Consensus 80 ~il~id~~G~~~lk~~------~~~~~~~~~IfI~pps~~~L~~RL~~R------------g~es~e~I~~RL~~a~~e 140 (177)
.|||--|.-..|.... .+-.++ ++||+..|. +++.+|+..| -+++++.+.+||......
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PD-lVI~LDVp~-evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~ 157 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLD-AVVELRVNE-GALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQ 157 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcC-eEEEEECCH-HHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHH
Confidence 5776655444444321 110133 466677654 8899998876 345788999999776665
No 72
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=65.75 E-value=4.3 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=29.9
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhh
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSY 151 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~ 151 (177)
.+|+|..| .+.-.+|+.+|..-+.+++.+|++.-...-+....++...
T Consensus 125 ~vi~V~a~-~e~ri~Rl~~R~~~~~~~~~~ri~~Q~~~~~k~~~ad~vI 172 (180)
T PF01121_consen 125 EVIVVYAP-EEIRIKRLMERDGLSEEEAEARIASQMPDEEKRKRADFVI 172 (180)
T ss_dssp EEEEEE---HHHHHHHHHHHHTSTHHHHHHHHHTS--HHHHHHH-SEEE
T ss_pred eEEEEECC-HHHHHHHHHhhCCCcHHHHHHHHHhCCCHHHHHHhCCEEE
Confidence 56788876 4777889999865789999999876433333334444433
No 73
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=65.59 E-value=47 Score=29.32 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=61.9
Q ss_pred eeCHHHHHHHHHcCCeEEEEEe---CCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEF---AANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIE 113 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~---~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~ 113 (177)
+++.++..+..++....-.... .|++.|.+ -.+-+++..|++||. -+..|+..+-... .-.+++.|.|.+
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p-~~llEAma~G~PVI~-t~~~g~~E~v~~~-----~~G~lv~~~d~~ 358 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIP-VALMEAMAVGIPVVS-TLHSGIPELVEAD-----KSGWLVPENDAQ 358 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCcc-HHHHHHHhCCCCEEE-eCCCCchhhhcCC-----CceEEeCCCCHH
Confidence 5788888888887776654333 45678888 456677889988766 4666766554433 224556667888
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 114 ELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 114 ~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
.|.+.|..=-..+++..++.-++|++.+
T Consensus 359 ~la~ai~~l~~~d~~~~~~~~~~ar~~v 386 (406)
T PRK15427 359 ALAQRLAAFSQLDTDELAPVVKRAREKV 386 (406)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8988776543214555555555554433
No 74
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=64.69 E-value=44 Score=24.84 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=60.1
Q ss_pred CCCCcceEe-eCHHHHHHHHHcCCeEEEEEeCCceeee--cH--------HHH-HHHHhCCCeEEEEecHHHHHHHHHHc
Q psy9156 29 EVDGKAYHF-VTRADMEERIAAGEFLEHAEFAANLYGT--SR--------AAV-EAVINSGKTCVLDIEVQGVQQVKRAG 96 (177)
Q Consensus 29 E~~G~dY~F-vs~~eF~~~i~~g~FlE~~~~~G~~YGt--~~--------~~i-~~~~~~gk~~il~id~~G~~~lk~~~ 96 (177)
|-||.+..- ++.++|++.+.+.+++--.-|...+=|. .+ .++ .+.++.+++.+..+|..--..|.+.+
T Consensus 4 ~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 4 EYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred ccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence 457887665 5999999999999876655554444343 32 222 23344677888888888778888888
Q ss_pred CCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHH
Q psy9156 97 GAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLD 135 (177)
Q Consensus 97 ~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~ 135 (177)
+-..-|-+++.. +-+ ... -.|.-+.+.+...|.
T Consensus 84 ~I~~iPTl~lfk--~G~-~v~---~~G~~~~~~l~~~l~ 116 (120)
T cd03065 84 GLDEEDSIYVFK--DDE-VIE---YDGEFAADTLVEFLL 116 (120)
T ss_pred CCccccEEEEEE--CCE-EEE---eeCCCCHHHHHHHHH
Confidence 632234444433 212 111 234445566665554
No 75
>PRK04182 cytidylate kinase; Provisional
Probab=63.19 E-value=18 Score=27.32 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
..+.|||.+| .+.+.+|+..|+..+..+..+.+..
T Consensus 92 ~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~ 126 (180)
T PRK04182 92 ADLKIWLKAP-LEVRAERIAEREGISVEEALEETIE 126 (180)
T ss_pred CCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3478999986 5889999999976566655544443
No 76
>KOG3079|consensus
Probab=63.13 E-value=16 Score=29.83 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=29.9
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARR 139 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~------es~e~I~~RL~~a~~ 139 (177)
-+++|+..|- +++.+|+..||. ++.+.|++|++...+
T Consensus 114 ~fvl~fdc~e-e~~l~Rll~R~q~~~R~DDn~esikkR~et~~~ 156 (195)
T KOG3079|consen 114 DFVLFFDCPE-ETMLKRLLHRGQSNSRSDDNEESIKKRLETYNK 156 (195)
T ss_pred CEEEEEeCCH-HHHHHHHHhhcccCCCCCCchHHHHHHHHHHHH
Confidence 5789999875 999999988864 468889999988754
No 77
>PF12536 DUF3734: Patatin phospholipase ; InterPro: IPR021095 This entry represents bacterial proteins of approximately 110 amino acids in length. These proteins are found in association with PF01734 from PFAM. There are two completely conserved residues (F and G) that may be functionally important. The proteins in this family are frequently annotated as patatin family phospholipases however there is little accompanying literature to confirm this.
Probab=62.97 E-value=13 Score=27.19 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=29.8
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcC
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAG 50 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g 50 (177)
-...|-|-..++.++|...+||.| |+..+....++|
T Consensus 51 ~~~~IvhLiy~~~~~e~~sKDyeF-Sr~si~ehw~~G 86 (108)
T PF12536_consen 51 KRVNIVHLIYRRKPYEGHSKDYEF-SRSSIREHWEAG 86 (108)
T ss_pred CceEEEEeecCCCCccccccCccC-CHHHHHHHHHhH
Confidence 346677778888999999999999 888888877776
No 78
>PRK13976 thymidylate kinase; Provisional
Probab=62.71 E-value=70 Score=25.86 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHhCCCeEEEE---------------ecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCC-HHHHHHH
Q psy9156 70 VEAVINSGKTCVLD---------------IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET-EDSLRRR 133 (177)
Q Consensus 70 i~~~~~~gk~~il~---------------id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es-~e~I~~R 133 (177)
|...+++|++||.| +|.+-+..+....+....-++||+..| .++..+|+.+++-+. ..+..+|
T Consensus 79 I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~~~~~~l~~ 157 (209)
T PRK13976 79 ILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEFMDLEFYDK 157 (209)
T ss_pred HHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhcccHHHHHH
Confidence 45555667666654 233334444432211012466777765 488888887665432 2455567
Q ss_pred HHHHHHHhh
Q psy9156 134 LDLARRDMS 142 (177)
Q Consensus 134 L~~a~~e~~ 142 (177)
+..+-.++.
T Consensus 158 v~~~Y~~l~ 166 (209)
T PRK13976 158 VRKGFREIV 166 (209)
T ss_pred HHHHHHHHH
Confidence 766666653
No 79
>PRK09875 putative hydrolase; Provisional
Probab=62.63 E-value=39 Score=29.11 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=59.1
Q ss_pred eCHHHHHHHHHcCCeEEEEEeCCc-eeee--cHHHHHHHHhCC--CeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCH
Q psy9156 38 VTRADMEERIAAGEFLEHAEFAAN-LYGT--SRAAVEAVINSG--KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSI 112 (177)
Q Consensus 38 vs~~eF~~~i~~g~FlE~~~~~G~-~YGt--~~~~i~~~~~~g--k~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~ 112 (177)
.+.+...++.+.|-|+++..+.-. +|.. ..+.|..+++.| .-+++..|. |-+.....++ - +=+-+| .
T Consensus 191 ~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilLS~D~-~~~~~~~~~g--g-~G~~~i----~ 262 (292)
T PRK09875 191 DNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDI-TRRSHLKANG--G-YGYDYL----L 262 (292)
T ss_pred CCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEEeCCC-CCcccccccC--C-CChhHH----H
Confidence 478889999999999999876544 3432 235566677776 457777787 3332222222 1 111222 2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy9156 113 EELETRLRGRGTETEDSLRRRLDLAR 138 (177)
Q Consensus 113 ~~L~~RL~~Rg~es~e~I~~RL~~a~ 138 (177)
..+.-+|+.+| .++++|++.+-...
T Consensus 263 ~~~ip~L~~~G-vse~~I~~m~~~NP 287 (292)
T PRK09875 263 TTFIPQLRQSG-FSQADVDVMLRENP 287 (292)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHCH
Confidence 56777999999 58999998876543
No 80
>PLN02200 adenylate kinase family protein
Probab=62.12 E-value=20 Score=29.62 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred CeEEEEecHHHHHHHH---HHcCCCCceEEEEEcCCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHh
Q psy9156 78 KTCVLDIEVQGVQQVK---RAGGAMAGAVYVFVKPPSIEELETRLRGRG----TETEDSLRRRLDLARRDM 141 (177)
Q Consensus 78 k~~il~id~~G~~~lk---~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg----~es~e~I~~RL~~a~~e~ 141 (177)
...|+|--|....+.. ...+..++ ++||+..|. +++.+|+.+|+ +++.+.+++|++...+..
T Consensus 121 ~~~ILDG~Prt~~q~~~l~~~~~~~pd-~vi~Ld~~~-e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~ 189 (234)
T PLN02200 121 NKFLIDGFPRTEENRIAFERIIGAEPN-VVLFFDCPE-EEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALN 189 (234)
T ss_pred CeEEecCCcccHHHHHHHHHHhccCCC-EEEEEECCH-HHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 4467766555444332 22221122 567777765 88899999883 345688999998776553
No 81
>PRK14529 adenylate kinase; Provisional
Probab=61.94 E-value=19 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=14.9
Q ss_pred hcCCCC-HHHHHHHHHHHHHH
Q psy9156 121 GRGTET-EDSLRRRLDLARRD 140 (177)
Q Consensus 121 ~Rg~es-~e~I~~RL~~a~~e 140 (177)
+|.+++ ++.|++||+...++
T Consensus 160 ~R~DD~~ee~i~~Rl~~y~~~ 180 (223)
T PRK14529 160 TRADDQDEEAINKRHDIYYDT 180 (223)
T ss_pred cCCCCCcHHHHHHHHHHHHHc
Confidence 344564 67999999998775
No 82
>PTZ00088 adenylate kinase 1; Provisional
Probab=61.56 E-value=51 Score=27.17 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhc
Q psy9156 117 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG 152 (177)
Q Consensus 117 ~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~ 152 (177)
.+|.+|.+++++.|++||+...++.. .....|.
T Consensus 168 ~~l~~R~DD~~e~i~~Rl~~Y~~~t~---pl~~~y~ 200 (229)
T PTZ00088 168 PKLQKRSDDTEEIVAHRLNTYESTNS---PIIQFFK 200 (229)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHhH---HHHHHHH
Confidence 36778888999999999999886654 4444553
No 83
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=61.53 E-value=6.3 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.4
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
-++|++..| .+++.+|+.+||++
T Consensus 69 dl~IYL~~~-~e~~~~RI~kRgR~ 91 (146)
T PF01712_consen 69 DLIIYLDAS-PETCLERIKKRGRE 91 (146)
T ss_dssp SEEEEEE---HHHHHHHHHHCTTG
T ss_pred CeEEEEeCC-HHHHHHHHHHhCCc
Confidence 368999975 69999999999984
No 84
>PHA00729 NTP-binding motif containing protein
Probab=61.47 E-value=49 Score=27.53 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=23.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRR 132 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~ 132 (177)
+..+.+.+++.+.|..+|+.||- ....|.+
T Consensus 119 ~~l~il~~ls~edL~~~Lr~Rg~-~~~kI~e 148 (226)
T PHA00729 119 VSAVIFTTPSPEDLAFYLREKGW-YQIRVTM 148 (226)
T ss_pred CcEEEEecCCHHHHHHHHHhCCC-cHHHhhh
Confidence 45577777899999999999996 4555553
No 85
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=60.06 E-value=67 Score=24.73 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEEe---------------cHHHHHHHHHHcC-CCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 68 AAVEAVINSGKTCVLDI---------------EVQGVQQVKRAGG-AMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---------------d~~G~~~lk~~~~-~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..|...+++|++||+|= +..-+..+..... ..|+ ++||+..| .++..+|+..|+.
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PD-l~~~Ldv~-pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPD-LTFFLDVD-PEEALKRIAKRGE 141 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-S-EEEEEECC-HHHHHHHHHHTSS
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCC-EEEEEecC-HHHHHHHHHcCCc
Confidence 45666777888888774 3344444444331 0133 45666664 5899999999987
No 86
>PLN02842 nucleotide kinase
Probab=59.31 E-value=12 Score=34.83 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=27.4
Q ss_pred EEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 106 FVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 106 fI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
...||..+....||.+|.+++++.|++||....++.
T Consensus 134 ~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t 169 (505)
T PLN02842 134 KNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNA 169 (505)
T ss_pred ccCCCCccccccccccCCCCCHHHHHHHHHHHHHHh
Confidence 344554455667788888999999999999887665
No 87
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=58.83 E-value=9.5 Score=24.78 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=18.6
Q ss_pred cCCCCCCCCCCcceEeeCHHHHHHH
Q psy9156 22 TRGPRPGEVDGKAYHFVTRADMEER 46 (177)
Q Consensus 22 TR~~R~gE~~G~dY~Fvs~~eF~~~ 46 (177)
++++-.-+-+|+.|||+|++--++-
T Consensus 15 ~~a~~k~~Y~GktYYFcse~~~~~F 39 (53)
T COG3350 15 ENAEYKSSYGGKTYYFCSEECKEKF 39 (53)
T ss_pred cccceeEEeCCEEEEEeCHHHHHHH
Confidence 5555556789999999998765543
No 88
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=58.30 E-value=54 Score=26.04 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHHcC-CCCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 68 AAVEAVINSGKTCVLDIEVQGVQQVKRAGG-AMAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~G~~~lk~~~~-~~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+.+....+.|+.+|+.+.. --+++|.... +.+...+||+.. +++.+.+||..|.
T Consensus 58 ~~~~~~~~~~~~~vi~CSA-LKr~YRD~LR~~~~~~~Fv~L~g-~~~~i~~Rm~~R~ 112 (161)
T COG3265 58 DAAASLAQKNKHVVIACSA-LKRSYRDLLREANPGLRFVYLDG-DFDLILERMKARK 112 (161)
T ss_pred HHHHHhhcCCCceEEecHH-HHHHHHHHHhccCCCeEEEEecC-CHHHHHHHHHhcc
Confidence 3344445567766664432 1222332222 135788999996 6899999999995
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=58.11 E-value=65 Score=30.18 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCeEEEEec------HHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 68 AAVEAVINSGKTCVLDIE------VQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id------~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..+++.+.+|+.||+|-. ..-...+-+.++ .....|++..| .+++++|+..|..
T Consensus 411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~g--v~v~~i~~~~p-~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARAAG--IPCRCFLFNAP-LAQAKHNIAFREL 470 (526)
T ss_pred HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcC--CeEEEEEeCCC-HHHHHHHHHhhcc
Confidence 456778999999998763 334444444454 56777777776 5999999998864
No 90
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=57.79 E-value=36 Score=19.84 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=29.9
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~ 76 (177)
+.=||+..+.+++++|.+--. .. |..+-.++++|++.+++
T Consensus 10 ~lgis~~ti~~~~~~g~i~~~-~~-g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 10 YLGVSKDTVYRLIHEGELPAY-RV-GRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HHCCCHHHHHHHHHcCCCCeE-Ee-CCeEEEeHHHHHHHHhC
Confidence 344889999999999986544 33 67777888998887653
No 91
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=57.21 E-value=20 Score=29.17 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=27.3
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
.+|.|..|. +.-.+|+.+|+..|.++.+.|+..-
T Consensus 126 ~Vi~V~a~~-e~r~eRl~~R~~~~~e~~~~~~~~Q 159 (201)
T COG0237 126 KVIVVYAPP-EIRLERLMKRDGLDEEDAEARLASQ 159 (201)
T ss_pred EEEEEECCH-HHHHHHHHhcCCCCHHHHHHHHHhc
Confidence 677777764 7778999999988888888888664
No 92
>PRK00625 shikimate kinase; Provisional
Probab=56.89 E-value=77 Score=24.88 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=23.9
Q ss_pred ecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 84 IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 84 id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
++.+..+.++ ...++||+..| .+.+.+||.+|+.
T Consensus 85 ~~~e~~~~l~------~~~~Vv~L~~~-~e~l~~Rl~~R~~ 118 (173)
T PRK00625 85 MIEPSYAHIR------NRGLLVLLSLP-IATIYQRLQKRGL 118 (173)
T ss_pred CCHHHHHHHh------cCCEEEEEECC-HHHHHHHHhcCCC
Confidence 4554444442 23568999986 5999999999975
No 93
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=56.80 E-value=18 Score=25.52 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=18.0
Q ss_pred EEEcCCCHHHHHHHHhhcCCCCHH
Q psy9156 105 VFVKPPSIEELETRLRGRGTETED 128 (177)
Q Consensus 105 IfI~pps~~~L~~RL~~Rg~es~e 128 (177)
|||.+|. +++.+|+.+|+.....
T Consensus 96 i~L~~~~-e~~~~R~~~R~~~~~~ 118 (129)
T PF13238_consen 96 IFLDCSP-EELRKRLKKRGRKEEK 118 (129)
T ss_dssp EEEE--H-HHHHHHHHCTTTSCHH
T ss_pred EEEECCH-HHHHHHHHhCCCCCCC
Confidence 8998865 9999999999986644
No 94
>PRK08233 hypothetical protein; Provisional
Probab=55.64 E-value=41 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=15.1
Q ss_pred eEEEEEcCCCHHHHHHHHhhcC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg 123 (177)
-.+||+.+|. +++.+|+.+|.
T Consensus 99 d~~i~l~~~~-~~~~~R~~~R~ 119 (182)
T PRK08233 99 DVTIFIDTPL-DIAMARRILRD 119 (182)
T ss_pred CEEEEEcCCH-HHHHHHHHHHH
Confidence 3789999875 77666766664
No 95
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=54.52 E-value=84 Score=23.11 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.4
Q ss_pred hCCCeEEEEecHHHHHHHHHHcCC---CCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 75 NSGKTCVLDIEVQGVQQVKRAGGA---MAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 75 ~~gk~~il~id~~G~~~lk~~~~~---~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
.+|..||++.... .+..+..... .....+|++..| .+++++|+..|..
T Consensus 70 ~~~~~vVid~~~~-~~~~r~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 70 SAGEGVVVACSAL-KRIYRDILRGGAANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred hCCCCEEEEeccc-cHHHHHHHHhcCCCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 4788888876542 2233322211 134668888876 5899999999954
No 96
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=54.35 E-value=28 Score=25.25 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=24.4
Q ss_pred eEEEEEcCCCHHHHHHHHhh-----cCCCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRG-----RGTETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~-----Rg~es~e~I~~RL~~a 137 (177)
.+.||+..|. +...+|+.+ |...+++++.+++..-
T Consensus 84 ~~~i~l~~~~-~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 84 DLKIFLTASP-EVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred CEEEEEECCH-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4678888764 666677766 4445788887777654
No 97
>PLN02924 thymidylate kinase
Probab=54.06 E-value=1.1e+02 Score=25.03 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeEEEEecHH--------------HHHHHHHHcCCCCce-EEEEEcCCCHHHHHHHHhhcCCC-CHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDIEVQ--------------GVQQVKRAGGAMAGA-VYVFVKPPSIEELETRLRGRGTE-TEDSLR 131 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~--------------G~~~lk~~~~~~~~~-~~IfI~pps~~~L~~RL~~Rg~e-s~e~I~ 131 (177)
..|..++++|++||+|=-.. -+..+.... +.| ++||+..|. ++..+|...++.. ...+..
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~---~~PDlvi~Ld~~~-~~a~~R~~~~~~~~E~~~~~ 166 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGL---PAPDLVLYLDISP-EEAAERGGYGGERYEKLEFQ 166 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCC---CCCCEEEEEeCCH-HHHHHHhccCccccccHHHH
Confidence 45777778888877764322 122222222 333 667777654 7777776533211 123455
Q ss_pred HHHHHHHHHhh
Q psy9156 132 RRLDLARRDMS 142 (177)
Q Consensus 132 ~RL~~a~~e~~ 142 (177)
+|+..+-.++.
T Consensus 167 ~rv~~~Y~~la 177 (220)
T PLN02924 167 KKVAKRFQTLR 177 (220)
T ss_pred HHHHHHHHHHh
Confidence 66666555553
No 98
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=53.45 E-value=41 Score=31.16 Aligned_cols=55 Identities=24% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHhCCCeEEEEe---cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCC
Q psy9156 69 AVEAVINSGKTCVLDI---EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126 (177)
Q Consensus 69 ~i~~~~~~gk~~il~i---d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es 126 (177)
-|+..+..|..+|++. .|.-.. .....+ ...+.++|..+|.++.++|+..|+..+
T Consensus 351 vI~r~l~eG~SvIIEGVHl~P~~i~-~~~~~~--~~~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 351 IQERSAQEGTSLVLEGVHLVPGYLR-HPYQAG--ALVVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred HHHHHHHcCCeEEEECCCCCHHHHH-HHHhcC--CceEEEEEEECCHHHHHHHHHHHhhhc
Confidence 3567788999999864 553333 222222 567777888889999999999998765
No 99
>KOG3220|consensus
Probab=52.88 E-value=1e+02 Score=25.72 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=35.1
Q ss_pred HHHHhCC-CeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 71 EAVINSG-KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 71 ~~~~~~g-k~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
.+.+-.| +.|++|+-.==--.+.+.. ...++|.+. .+.-.+||.+|..-|+++.+.|++.
T Consensus 100 ~~~~l~G~r~ivlDiPLLFE~~~~~~~---~~tvvV~cd---~~~Ql~Rl~~Rd~lse~dAe~Rl~s 160 (225)
T KOG3220|consen 100 LKLLLRGYRVIVLDIPLLFEAKLLKIC---HKTVVVTCD---EELQLERLVERDELSEEDAENRLQS 160 (225)
T ss_pred HHHHhcCCeEEEEechHHHHHhHHhhe---eeEEEEEEC---cHHHHHHHHHhccccHHHHHHHHHh
Confidence 3334445 4566655432111233444 345555543 3666679999988889999999854
No 100
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=51.52 E-value=34 Score=28.32 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=33.2
Q ss_pred ceeeecHHHHHHHHhCC------CeEEEEecHHHHHHHHHHcCCCCceEEEEEcC
Q psy9156 61 NLYGTSRAAVEAVINSG------KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKP 109 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~g------k~~il~id~~G~~~lk~~~~~~~~~~~IfI~p 109 (177)
.||||+.+.+..++++| +.|=+..|...+.+.-.... ..|++++|.+
T Consensus 123 LyhGTs~~~l~~I~~~Gi~Pm~R~~VHLS~~~~~A~~vg~rh~--~~pVvL~IDa 175 (211)
T COG1859 123 LYHGTSPEFLPSILEEGLKPMKRRHVHLSADYETAKQVGLRHS--GSPVVLEIDA 175 (211)
T ss_pred EEecCChhhhHHHHHhcCccccCceEEecCCHHHHHHHhhccC--CCcEEEEEeh
Confidence 57888888888888887 34556667777777665553 4678888864
No 101
>PRK06217 hypothetical protein; Validated
Probab=49.91 E-value=75 Score=24.61 Aligned_cols=47 Identities=23% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 72 AVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 72 ~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+.+..+...|++..+.......... .-.+||+.+|. ++..+|+.+|.
T Consensus 59 ~~~~~~~~~vi~G~~~~~~~~~~~~----~d~~i~Ld~~~-~~~~~Rl~~R~ 105 (183)
T PRK06217 59 EDLRPREGWVLSGSALGWGDPLEPL----FDLVVFLTIPP-ELRLERLRLRE 105 (183)
T ss_pred HHHhcCCCEEEEccHHHHHHHHHhh----CCEEEEEECCH-HHHHHHHHcCc
Confidence 3344555677776665433222222 23578998875 88889999874
No 102
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=48.90 E-value=40 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEEEcCCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRG---TETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg---~es~e~I~~RL~~ 136 (177)
.+|||.+|. +...+|+..|. .-+++++.+|+..
T Consensus 163 ~vi~v~~~~-~~~~~R~~~R~~~~g~s~~~~~~~~~~ 198 (229)
T PRK09270 163 FTIFLDAPA-EVLRERLVARKLAGGLSPEAAEAFVLR 198 (229)
T ss_pred EEEEEECCH-HHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 679999875 78888888882 2478888888863
No 103
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=48.80 E-value=33 Score=21.44 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy9156 114 ELETRLRGRGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 114 ~L~~RL~~Rg~es~e~I~~RL~~a~~e~~ 142 (177)
.|+..|..+|. ++++|+.+++..+..+.
T Consensus 15 elrd~LEe~g~-~~eeIe~kv~~~R~~L~ 42 (46)
T PF08312_consen 15 ELRDELEEQGY-SEEEIEEKVDELRKKLL 42 (46)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 57788888996 89999999999887663
No 104
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=48.75 E-value=20 Score=29.77 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=19.9
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
-..|++.. |++++.+|+.+||+.
T Consensus 128 dllIyLd~-~~e~~l~RI~~RgR~ 150 (216)
T COG1428 128 DLLIYLDA-SLETLLRRIAKRGRP 150 (216)
T ss_pred CEEEEEeC-CHHHHHHHHHHhCCC
Confidence 36789987 799999999999984
No 105
>PRK06696 uridine kinase; Validated
Probab=48.69 E-value=60 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=17.3
Q ss_pred eEEEEEcCCCHHHHHHHHhhcC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg 123 (177)
.+.|||.+|. +...+|+..|.
T Consensus 148 d~~i~v~~~~-e~~~~R~~~Rd 168 (223)
T PRK06696 148 DYKIFLDTDF-EVSRRRGAKRD 168 (223)
T ss_pred CEEEEEECCH-HHHHHHHHHhh
Confidence 4789999986 88888888774
No 106
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=48.54 E-value=40 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=19.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
-++||+.+|. +.+.+|+.+||+.
T Consensus 144 d~~i~l~~~~-~~~~~Ri~~R~~~ 166 (219)
T cd02030 144 HLVIYLDVPV-PEVQKRIKKRGDP 166 (219)
T ss_pred CEEEEEeCCH-HHHHHHHHHcCCc
Confidence 3678888865 9999999999975
No 107
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=48.23 E-value=1.1e+02 Score=22.57 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=51.3
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELE 116 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~ 116 (177)
.++.+++.++.+...++-+.... -|.+ -.+.+++..|.++|+ -+..|...+-... ...+++.+++.+.+.
T Consensus 80 ~~~~~~l~~~~~~~di~v~~s~~---e~~~-~~~~Ea~~~g~pvI~-~~~~~~~e~~~~~-----~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 80 YVPDDELDELYKSSDIFVSPSRN---EGFG-LSLLEAMACGCPVIA-SDIGGNNEIINDG-----VNGFLFDPNDIEELA 149 (172)
T ss_dssp SHSHHHHHHHHHHTSEEEE-BSS---BSS--HHHHHHHHTT-EEEE-ESSTHHHHHSGTT-----TSEEEESTTSHHHHH
T ss_pred cccccccccccccceeccccccc---cccc-cccccccccccceee-ccccCCceeeccc-----cceEEeCCCCHHHHH
Confidence 45677999999998888876655 4444 246677889987775 4555665554433 245777788889998
Q ss_pred HHHhhcC
Q psy9156 117 TRLRGRG 123 (177)
Q Consensus 117 ~RL~~Rg 123 (177)
+.+.+--
T Consensus 150 ~~i~~~l 156 (172)
T PF00534_consen 150 DAIEKLL 156 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 108
>COG3072 CyaA Adenylate cyclase [Nucleotide transport and metabolism]
Probab=46.49 E-value=27 Score=33.67 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc-------hhhhhhcccccchhhhhhcccCCc
Q psy9156 112 IEELETRLRGRGTETEDSLRRRLDLARRDMSYGK-------DSLRSYGKNSLRSYVEASVSSGNM 169 (177)
Q Consensus 112 ~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 169 (177)
..+|++|+.+ -=+.|+++|..-|.-+- ..+.+++|-.|++|++|.+|+|--
T Consensus 5 l~~lkqr~~a-------ln~~R~eRAl~~~~~~fq~V~~LlplLlH~nHPllPGYl~~~~P~Gi~ 62 (853)
T COG3072 5 LETLKQRLDA-------LNQLRVERALAAMGPAFQRVLSLLPLLLHINHPLLPGYLDGNVPAGIC 62 (853)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCCCCccccCCCCccee
Confidence 4677888732 33678888877663332 336677999999999999999954
No 109
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=46.20 E-value=1.6e+02 Score=23.99 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=58.3
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeC---CceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFA---ANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIE 113 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~---G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~ 113 (177)
+++.++..+...+..++-..... ++..|.+ -.+-+++..|+++|. .+..|...+-+.. ...+++.+.+.+
T Consensus 243 ~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~-~~~~Ea~a~G~Pvi~-~~~~~~~~~i~~~-----~~g~~~~~~~~~ 315 (355)
T cd03799 243 AKSQEEVRELLRAADLFVLPSVTAADGDREGLP-VVLMEAMAMGLPVIS-TDVSGIPELVEDG-----ETGLLVPPGDPE 315 (355)
T ss_pred cCChHHHHHHHHhCCEEEecceecCCCCccCcc-HHHHHHHHcCCCEEe-cCCCCcchhhhCC-----CceEEeCCCCHH
Confidence 67888888888877766554332 3346777 446677888988776 4555555554433 134556666888
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 114 ELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 114 ~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
.+.+.|..=- .+++...+.-++|.+.+
T Consensus 316 ~l~~~i~~~~-~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 316 ALADAIERLL-DDPELRREMGEAGRARV 342 (355)
T ss_pred HHHHHHHHHH-hCHHHHHHHHHHHHHHH
Confidence 8887775433 24444444444444433
No 110
>KOG1384|consensus
Probab=44.49 E-value=20 Score=31.77 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=65.5
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHH-
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQV- 92 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~l- 92 (177)
+..-...+|-++-..|..|+.+|-...-.+++.. ..+.++-.....|+++++.|+++|+..-.+...+.
T Consensus 43 vYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~----------t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al 112 (348)
T KOG1384|consen 43 VYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEY----------TAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQAL 112 (348)
T ss_pred eecCcccccccCChhhcCCCChHHhCcCChHhhc----------cHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHH
Confidence 3344566888888888999998864433333321 22445555678899999999999887655544333
Q ss_pred HHH------cC---------C--CCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 93 KRA------GG---------A--MAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 93 k~~------~~---------~--~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
-.. .+ + ++++.++++.++. .+|-+||-+|-
T Consensus 113 ~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~-~VL~~~l~~RV 159 (348)
T KOG1384|consen 113 LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQ-AVLFERLDKRV 159 (348)
T ss_pred hhcCCCcccCcccccCCCCCcccccceEEEEEecch-HHHHHHHHHHH
Confidence 322 00 0 1468999999876 88988987774
No 111
>PRK13695 putative NTPase; Provisional
Probab=44.26 E-value=1e+02 Score=23.53 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHH
Q psy9156 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELET 117 (177)
Q Consensus 67 ~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~ 117 (177)
.+.+.++++.|+.+|+.+.-.+....-.......+..++-|+|-+.+.|-.
T Consensus 116 ~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~ 166 (174)
T PRK13695 116 VKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPF 166 (174)
T ss_pred HHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHH
Confidence 345556666666666666544433322211111345555556555554443
No 112
>PRK09087 hypothetical protein; Validated
Probab=43.84 E-value=70 Score=26.13 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHHHHHhCCCeEEEEecH--H----HHHHHHHHcCCCCceEEEEEcCCCHHHHHHH----HhhcCC-CCHHHHHHHHHHH
Q psy9156 69 AVEAVINSGKTCVLDIEV--Q----GVQQVKRAGGAMAGAVYVFVKPPSIEELETR----LRGRGT-ETEDSLRRRLDLA 137 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~--~----G~~~lk~~~~~~~~~~~IfI~pps~~~L~~R----L~~Rg~-es~e~I~~RL~~a 137 (177)
-+....+.|+.+|+..+. . ....|+.+. -...++-|.||+.+.+.+- ...++- -+++.++.-+.++
T Consensus 109 l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl---~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~ 185 (226)
T PRK09087 109 LINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRL---KAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRM 185 (226)
T ss_pred HHHHHHhCCCeEEEECCCChHHhccccccHHHHH---hCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 345556778888886652 1 246677777 5778999999997765543 334543 4456655555555
Q ss_pred HHHhhhcc
Q psy9156 138 RRDMSYGK 145 (177)
Q Consensus 138 ~~e~~~~~ 145 (177)
...+....
T Consensus 186 ~r~~~~l~ 193 (226)
T PRK09087 186 ERSLFAAQ 193 (226)
T ss_pred hhhHHHHH
Confidence 55554444
No 113
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=43.63 E-value=56 Score=26.54 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCHHHHHHHHhh----cCCCCHHHHHHHHHHHH
Q psy9156 100 AGAVYVFVKPPSIEELETRLRG----RGTETEDSLRRRLDLAR 138 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~----Rg~es~e~I~~RL~~a~ 138 (177)
++.++|.-.-|. +.|.+|++. |..+|.++|++..+.++
T Consensus 110 pd~ivllEaDp~-~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR 151 (189)
T COG2019 110 PDVIVLLEADPE-EILERRLRDSRRDRDVESVEEIREHQEMNR 151 (189)
T ss_pred CCEEEEEeCCHH-HHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 444444444443 677778765 45577888888776654
No 114
>PRK13948 shikimate kinase; Provisional
Probab=43.02 E-value=1.7e+02 Score=23.20 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHHhCCCeEEE-----EecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhc
Q psy9156 70 VEAVINSGKTCVL-----DIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 70 i~~~~~~gk~~il-----~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~R 122 (177)
+++++..+..+|. .++++....|++. ..+||+..| .+.+.+||..+
T Consensus 73 l~~l~~~~~~VIa~GgG~v~~~~n~~~l~~~------g~vV~L~~~-~e~l~~Rl~~~ 123 (182)
T PRK13948 73 VRRLTRLDYAVISLGGGTFMHEENRRKLLSR------GPVVVLWAS-PETIYERTRPG 123 (182)
T ss_pred HHHHHhcCCeEEECCCcEEcCHHHHHHHHcC------CeEEEEECC-HHHHHHHhcCC
Confidence 4455544443333 2566666666543 357888865 59999999654
No 115
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=42.99 E-value=53 Score=25.43 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=16.8
Q ss_pred EEEEEcCCCHHHHHHHHhhcCC
Q psy9156 103 VYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
.+||+..| .++..+|+.+|++
T Consensus 127 ~~i~l~~~-~~~~~~Ri~~R~r 147 (193)
T cd01673 127 LVIYLDAS-PETCLKRIKKRGR 147 (193)
T ss_pred EEEEEeCC-HHHHHHHHHhcCc
Confidence 56777765 5899999999986
No 116
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=42.68 E-value=16 Score=30.14 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc-------hhhhhhcccccchhhhhhcccCC
Q psy9156 112 IEELETRLRGRGTETEDSLRRRLDLARRDMSYGK-------DSLRSYGKNSLRSYVEASVSSGN 168 (177)
Q Consensus 112 ~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
++.+++|.. .-=+.|+++|..-|.... +.+-+|+|-.+++|++..+|+|.
T Consensus 5 l~~~~~r~~-------~lN~~R~~RAl~~l~~~~q~vf~LlPlLlH~Nhp~lPGYv~~~~P~GI 61 (204)
T PF12633_consen 5 LETLKQRFD-------RLNQLRLERALAALSPRQQHVFQLLPLLLHYNHPLLPGYVSPDTPCGI 61 (204)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCce
Confidence 456666663 223668888876663322 34778899999999999999994
No 117
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=42.22 E-value=54 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 100 AGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
....+||+..| .+.+++|+.+|..
T Consensus 98 ~~~~~v~l~a~-~~~l~~Rl~~R~~ 121 (176)
T PRK09825 98 PNVHFLWLDGD-YETILARMQRRAG 121 (176)
T ss_pred CCEEEEEEeCC-HHHHHHHHhcccC
Confidence 45678899876 5999999999963
No 118
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=42.01 E-value=1.7e+02 Score=23.12 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=54.2
Q ss_pred HHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHH---HHHHHHH---cCCCCceEEEEEcCCCHHHHHHHH
Q psy9156 46 RIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQG---VQQVKRA---GGAMAGAVYVFVKPPSIEELETRL 119 (177)
Q Consensus 46 ~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G---~~~lk~~---~~~~~~~~~IfI~pps~~~L~~RL 119 (177)
-+++|+++.. ++..|+-+..+...-..+ .+|++-=|.- ++.+++. ++ .....++.+..|. +.+..|+
T Consensus 52 ~i~~g~lv~d----~i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g-~~~d~v~~~~~~~-~~~~~r~ 124 (178)
T COG0563 52 YIDKGELVPD----EIVNGLVKERLDEADCKA-GFILDGFPRTLCQARALKRLLKELG-VRLDMVIELDVPE-ELLLERL 124 (178)
T ss_pred HHHcCCccch----HHHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcC-CCcceEEeeeCCH-HHHHHHH
Confidence 3566664432 233466656665552222 5677664443 3333333 22 1346778888887 9999999
Q ss_pred hhcC---CCCHHHHHHHHHHHHHH
Q psy9156 120 RGRG---TETEDSLRRRLDLARRD 140 (177)
Q Consensus 120 ~~Rg---~es~e~I~~RL~~a~~e 140 (177)
..|. +++++.+++|+....++
T Consensus 125 ~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 125 LGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred hCccccccCCHHHHHHHHHHHHhc
Confidence 9884 67899999999877643
No 119
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.43 E-value=33 Score=26.25 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=32.7
Q ss_pred EEEEcCCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHHhhhcchhhhhhcccccchh-hhhh-cccCCceeeee
Q psy9156 104 YVFVKPPSIEELETRLRGRGTET---EDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY-VEAS-VSSGNMLKIAF 174 (177)
Q Consensus 104 ~IfI~pps~~~L~~RL~~Rg~es---~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 174 (177)
-|||.||+--.|..-...+|.+. ..+|.++...-+.+-.-. +.+. .+-.++. ..|| ||||++=+.|.
T Consensus 6 kvfI~PpNSLIL~DLVERfGH~PL~l~~~i~kkV~~peiDSPP~--NiT~--edpk~GLkYAAvEVPsGVRGRmal 77 (152)
T COG4050 6 KVFIYPPNSLILADLVERFGHEPLVLQKEIKKKVTDPEIDSPPM--NITP--EDPKRGLKYAAVEVPSGVRGRMAL 77 (152)
T ss_pred eEeecCChhHHHHHHHHHhCCCCchhHHHHHhhccCcCcCCCCC--cCCc--ccccccceeeEEecCCCccceeee
Confidence 58999998555555555556643 223333332211111110 1000 0122444 3455 99999876654
No 120
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=41.30 E-value=2.2e+02 Score=24.18 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCCCCCCcceEeeCHHH----HHHHHHcC------CeEEEEEeCCceeeecHHHHHHHHhCCC-----eEEEEecHHHH
Q psy9156 25 PRPGEVDGKAYHFVTRAD----MEERIAAG------EFLEHAEFAANLYGTSRAAVEAVINSGK-----TCVLDIEVQGV 89 (177)
Q Consensus 25 ~R~gE~~G~dY~Fvs~~e----F~~~i~~g------~FlE~~~~~G~~YGt~~~~i~~~~~~gk-----~~il~id~~G~ 89 (177)
||+|+..-.. | |.++ ++.+.+.| .-+|...+.. .-.++|..+++.+. ...+.....|+
T Consensus 8 lRDG~Q~~~~--~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~----~d~~~v~~~~~~~~~~~~v~~~~r~~~~di 80 (279)
T cd07947 8 FRDGQQARPP--Y-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE----KDREAVEACLDRGYKFPEVTGWIRANKEDL 80 (279)
T ss_pred CCCcCCCCCC--C-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh----HHHHHHHHHHHcCCCCCEEEEEecCCHHHH
Confidence 7888877544 4 5544 55666777 2566532211 33466777776642 12233477788
Q ss_pred HHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 90 QQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 90 ~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
+...+.. .+.+.+|+. -| +...++-.++ +.+++-.++..+.+
T Consensus 81 e~A~~~g---~~~v~i~~s-~S-~~~~~~~~~~---t~~e~l~~~~~~v~ 122 (279)
T cd07947 81 KLVKEMG---LKETGILMS-VS-DYHIFKKLKM---TREEAMEKYLEIVE 122 (279)
T ss_pred HHHHHcC---cCEEEEEEc-CC-HHHHHHHhCc---CHHHHHHHHHHHHH
Confidence 8777765 777778774 45 4444333333 34555555544433
No 121
>KOG3812|consensus
Probab=41.10 E-value=47 Score=29.83 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=31.3
Q ss_pred CeEEEEecH-HHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 78 KTCVLDIEV-QGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 78 k~~il~id~-~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
+.+++|.|. +---+|.+.. ..|++|||+..|.++|.+-|+.||+
T Consensus 263 qLvvlDadtInhPaql~kts---LaPI~v~ikvSspKvLqrLirsrGk 307 (475)
T KOG3812|consen 263 QLVVLDADTINHPAQLAKTS---LAPIIVYIKVSSPKVLQRLIRSRGK 307 (475)
T ss_pred eEEEecCCcCCCHHHhccCC---CcceEEEEEeCCHHHHHHHHHhcCc
Confidence 445555543 2223444444 7899999999999999988899996
No 122
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=40.67 E-value=82 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 100 AGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
....+|++.+| .+++++|+..|..
T Consensus 90 ~~~~~v~l~a~-~~~l~~Rl~~R~~ 113 (163)
T PRK11545 90 PNLSFIYLKGD-FDVIESRLKARKG 113 (163)
T ss_pred CCEEEEEEECC-HHHHHHHHHhccC
Confidence 45788999976 5999999999974
No 123
>PHA02757 hypothetical protein; Provisional
Probab=40.64 E-value=24 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.583 Sum_probs=23.0
Q ss_pred eeeecHHHHHHHHhCCCeEEEEecHH
Q psy9156 62 LYGTSRAAVEAVINSGKTCVLDIEVQ 87 (177)
Q Consensus 62 ~YGt~~~~i~~~~~~gk~~il~id~~ 87 (177)
.-|+..+.+.+++++.|.||+++|+.
T Consensus 30 ~C~v~Qe~~~eildkdK~CiiE~de~ 55 (75)
T PHA02757 30 ACGVDQEKANEILDKDKACIIEIDED 55 (75)
T ss_pred EcCccHHHHHHHhcccceEEEEEcCC
Confidence 46778888999999999999999986
No 124
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.40 E-value=26 Score=28.98 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=44.0
Q ss_pred EEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHc----CC-----CC------ceEEEEEcCCCHHHHHHHHh
Q psy9156 56 AEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAG----GA-----MA------GAVYVFVKPPSIEELETRLR 120 (177)
Q Consensus 56 ~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~----~~-----~~------~~~~IfI~pps~~~L~~RL~ 120 (177)
+...|...-..+++|+++++.|-+|+..+++|=+.++.... |- .+ .--+++|..| .++|.+||+
T Consensus 95 tN~pgsr~~kR~qDVeeLL~aGIdV~TTlNvqHlESlnd~V~~iTgv~vrEtVPD~~l~~Adev~lVDi~-Pe~L~~RL~ 173 (211)
T PF02702_consen 95 TNAPGSRHKKRYQDVEELLDAGIDVYTTLNVQHLESLNDVVEQITGVRVRETVPDSVLDRADEVELVDIT-PEELLERLK 173 (211)
T ss_dssp B--TT-SSSBHHHHHHHHHHTT-EEEEEEEGGGBGGGHHHHHHHHS----S-B-HHHHHT-SCEEEB----HHHHHHHHH
T ss_pred cCCCCCCCcccHHhHHHHHHCCCeEEEeeeHHHhhhhHHHHHHHhCCeeeeeCCHHHHhhcCeEEEecCC-HHHHHHHHH
Confidence 33456677788999999999999999999998776666421 00 00 1134666654 489999997
Q ss_pred hcCCCCHHHHHHHH
Q psy9156 121 GRGTETEDSLRRRL 134 (177)
Q Consensus 121 ~Rg~es~e~I~~RL 134 (177)
.-.-..++.++.-|
T Consensus 174 ~Gkiy~~~~~~~Al 187 (211)
T PF02702_consen 174 EGKIYPPEQAERAL 187 (211)
T ss_dssp TT----TT--HHHH
T ss_pred cCCcCChHHHHHHH
Confidence 54323333444433
No 125
>PRK13974 thymidylate kinase; Provisional
Probab=40.24 E-value=1.9e+02 Score=23.04 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.2
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
-++||+..|. +++.+|+..|+++
T Consensus 136 d~~i~ld~~~-~~~~~R~~~R~dD 158 (212)
T PRK13974 136 DLTFFLEISV-EESIRRRKNRKPD 158 (212)
T ss_pred CEEEEEeCCH-HHHHHHHHhcccC
Confidence 3467777764 8899999988754
No 126
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=39.88 E-value=1.3e+02 Score=23.79 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=12.4
Q ss_pred eEEEEEcCCCHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLR 120 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~ 120 (177)
-.+|||.+|....+.+|+.
T Consensus 127 d~~I~v~~~~~~~l~R~~~ 145 (207)
T TIGR00235 127 DLKIFVDTPLDIRLIRRIE 145 (207)
T ss_pred CEEEEEECChhHHHHHHHH
Confidence 3789999987444554443
No 127
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=39.82 E-value=1.3e+02 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+.++|||..| .+.+.+|+.+|+
T Consensus 227 ~~~~V~L~a~-~e~~~~Rl~~r~ 248 (309)
T PRK08154 227 HCYTVWLKAS-PEEHMARVRAQG 248 (309)
T ss_pred CCEEEEEECC-HHHHHHHHhcCC
Confidence 4579999986 599999998875
No 128
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=39.58 E-value=1.5e+02 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.7
Q ss_pred CceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 100 AGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
...++|||..| .+.+.+|+.+|+
T Consensus 91 ~~~~~i~l~~~-~e~~~~R~~~r~ 113 (154)
T cd00464 91 ENGIVVWLDAS-PEELLERLARDK 113 (154)
T ss_pred cCCeEEEEeCC-HHHHHHHhccCC
Confidence 35678999987 599999998874
No 129
>PF06021 Gly_acyl_tr_N: Aralkyl acyl-CoA:amino acid N-acyltransferase; InterPro: IPR015938 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].; GO: 0047961 glycine N-acyltransferase activity, 0005739 mitochondrion
Probab=39.48 E-value=24 Score=29.08 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=45.0
Q ss_pred HhhhCCCceeeeeeeecCCCCCCCCCCcceE-------eeCHHHHHHHHHcCCeEEEEEe---CCceeeecHHHHHHHH
Q psy9156 6 FFQDYPDRFGFSVSHTTRGPRPGEVDGKAYH-------FVTRADMEERIAAGEFLEHAEF---AANLYGTSRAAVEAVI 74 (177)
Q Consensus 6 Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~-------Fvs~~eF~~~i~~g~FlE~~~~---~G~~YGt~~~~i~~~~ 74 (177)
|+...|+ |. +..|||.+..+.|..||| .-+.+..+++++..+-|.|.++ .|..-|.- +.|+++.
T Consensus 45 lVDsWPd-F~---tVItRPqkq~mtDdlD~ytNtY~if~kD~~~~~elL~~~dVInW~Q~fqIQg~q~~l~-e~i~~va 118 (205)
T PF06021_consen 45 LVDSWPD-FK---TVITRPQKQEMTDDLDHYTNTYAIFSKDPRALQELLEEPDVINWKQHFQIQGSQSSLN-EVIKEVA 118 (205)
T ss_pred EEecCCC-ce---EEEEccCccccccccccceeEEEEEeCCHHHHHHHhcCcCccchhhheeHHHHHHHHH-HHHHHHH
Confidence 3445565 53 446999999999988873 3478889999999999999885 45555543 4444444
No 130
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=39.47 E-value=14 Score=27.37 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhhh
Q psy9156 110 PSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVEA 162 (177)
Q Consensus 110 ps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~~ 162 (177)
||...|.++|.++..++.+ + .-+..+..|-++++++||+=
T Consensus 55 ~Sr~~liq~llkkSeeNKa---------k----ndkERLDdYYKRNykDYF~f 94 (122)
T PLN00078 55 ESRKALLQEYLKKSEENKE---------K----NDKERLDDYYKRNYKDYFGL 94 (122)
T ss_pred chHHHHHHHHHHHhHHhHH---------H----hHHHHHHHHHHHhHHHHHHH
Confidence 5778888888887654322 1 11234556767778888754
No 131
>PHA01630 putative group 1 glycosyl transferase
Probab=39.34 E-value=1.6e+02 Score=25.43 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEE-----------
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYV----------- 105 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~I----------- 105 (177)
+++.++.....+..+.+-+.... .-+|.+ +-+++..|++||. .|..|...+-... .+-+.|
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~-E~fgl~---~lEAMA~G~PVIa-s~~gg~~E~i~~~---~ng~lv~~~~~~~~~~~ 268 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRG-GAFEIP---VIEALALGLDVVV-TEKGAWSEWVLSN---LDVYWIKSGRKPKLWYT 268 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCcc-ccCChH---HHHHHHcCCCEEE-eCCCCchhhccCC---CceEEeeeccccccccc
Confidence 58899999999998888775543 334655 5678889998776 4444555443332 121111
Q ss_pred ------EEcCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHHH
Q psy9156 106 ------FVKPPSIEELETRLRGRGTE-TEDSLRRRLDLARRD 140 (177)
Q Consensus 106 ------fI~pps~~~L~~RL~~Rg~e-s~e~I~~RL~~a~~e 140 (177)
++.+|+.+.+.+.+...-.+ ++++.++++.++...
T Consensus 269 ~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~ 310 (331)
T PHA01630 269 NPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAIL 310 (331)
T ss_pred CCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 22356777777666554332 235566666655443
No 132
>COG4639 Predicted kinase [General function prediction only]
Probab=38.99 E-value=2e+02 Score=22.99 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=42.4
Q ss_pred cHHHHHHHHhCCCeEEEEecH---HH---HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC-CCHHHHHHHHHH
Q psy9156 66 SRAAVEAVINSGKTCVLDIEV---QG---VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT-ETEDSLRRRLDL 136 (177)
Q Consensus 66 ~~~~i~~~~~~gk~~il~id~---~G---~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~-es~e~I~~RL~~ 136 (177)
-...++..+.+|+..|+|-.- .- +..|-+.++ ..+++|.+..| .+.+.+|-+.|.+ ..++.|.+.+..
T Consensus 58 l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~--~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 58 LYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYG--YKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRMLRE 132 (168)
T ss_pred HHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhC--CeEEEEEEeCC-HHHHHHHhhccchhCCHHHHHHHHHH
Confidence 345566778899999998643 33 334445565 66666777665 4778888544433 345566666555
No 133
>PRK13947 shikimate kinase; Provisional
Probab=38.79 E-value=1.3e+02 Score=22.53 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.3
Q ss_pred EEEEEcCCCHHHHHHHHhhcC
Q psy9156 103 VYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg 123 (177)
++||+..| .+.+.+|+..|+
T Consensus 96 ~vv~L~~~-~~~l~~Rl~~r~ 115 (171)
T PRK13947 96 VVICLKAR-PEVILRRVGKKK 115 (171)
T ss_pred EEEEEECC-HHHHHHHhcCCC
Confidence 58999885 589999998774
No 134
>PRK09450 cyaA adenylate cyclase; Provisional
Probab=38.75 E-value=39 Score=33.50 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc-------hhhhhhcccccchhhhhhcccCC
Q psy9156 112 IEELETRLRGRGTETEDSLRRRLDLARRDMSYGK-------DSLRSYGKNSLRSYVEASVSSGN 168 (177)
Q Consensus 112 ~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
.+.+++|+ ..--+.||++|..-|.... +.+-+|+|-.|++|+++.+|+|-
T Consensus 5 l~~l~~R~-------~~lN~~Rl~RAl~~l~~~~q~vl~llPlLlH~Nhp~lPGYv~~~~P~GI 61 (830)
T PRK09450 5 LETLKQRL-------DALNQLRLARALAALSPAFQQVLSLLPLLLHVNHPLLPGYVSGNTPAGI 61 (830)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCee
Confidence 35566666 2345788888877664333 34778899999999999999994
No 135
>PRK05480 uridine/cytidine kinase; Provisional
Probab=38.57 E-value=1.4e+02 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=21.9
Q ss_pred eEEEEEcCCCHHHHHHHHhhcC----CCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRG----TETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg----~es~e~I~~RL~~a 137 (177)
-..|||.+|. +...+|+..|. ..+.+++..+....
T Consensus 127 d~~I~v~~~~-~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~ 165 (209)
T PRK05480 127 DIKIFVDTPL-DIRLIRRLKRDVNERGRSLESVINQYLST 165 (209)
T ss_pred ceeEEEeCCh-hHHHHHHHhhcchhcCCCHHHHHHHHHHh
Confidence 4679999887 55555555553 23677776666544
No 136
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.53 E-value=53 Score=26.69 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=42.6
Q ss_pred EecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhh
Q psy9156 83 DIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSY 151 (177)
Q Consensus 83 ~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~ 151 (177)
.||+-|.-.+|...+ +..-+.|...|.+.+.+.+.|...|..+ . +.|...|.+-.++....++..
T Consensus 119 nIDIGGpsmlRaAAK-N~~~V~vv~dp~dY~~v~~~l~~~g~~~-~--~~R~~lA~kAF~~ta~YD~~I 183 (187)
T cd01421 119 NIDIGGPSLLRAAAK-NYKDVTVLVDPADYQKVLEELKSNGSIS-E--ETRRRLALKAFAHTAEYDAAI 183 (187)
T ss_pred hccCCcHHHHHHHHh-cCCCeEEEcCHHHHHHHHHHHHhcCCCC-H--HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776542 3567889999999999999998776543 3 334444555555544444433
No 137
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=38.00 E-value=2.2e+02 Score=23.54 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=55.5
Q ss_pred eeCHHHHHHHHHcCCeEEEEE---eCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAE---FAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIE 113 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~---~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~ 113 (177)
+++.+++.....+...+-... -.|+..|.+ -.+-+++..|+++|. -|..|...+-... -..+++.+.+.+
T Consensus 252 ~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~-~~~~EA~a~G~PvI~-s~~~~~~e~i~~~-----~~g~~~~~~d~~ 324 (367)
T cd05844 252 AQPHAEVRELMRRARIFLQPSVTAPSGDAEGLP-VVLLEAQASGVPVVA-TRHGGIPEAVEDG-----ETGLLVPEGDVA 324 (367)
T ss_pred CCCHHHHHHHHHhCCEEEECcccCCCCCccCCc-hHHHHHHHcCCCEEE-eCCCCchhheecC-----CeeEEECCCCHH
Confidence 466788888887777654422 134566777 446677889988775 4555544333222 234566677888
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 114 ELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 114 ~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
.+.+.|..-- .+++..++.-.++..
T Consensus 325 ~l~~~i~~l~-~~~~~~~~~~~~a~~ 349 (367)
T cd05844 325 ALAAALGRLL-ADPDLRARMGAAGRR 349 (367)
T ss_pred HHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 8887775543 344444433334433
No 138
>KOG3354|consensus
Probab=37.69 E-value=68 Score=25.91 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
...+||+.. |++++.+||.+|.
T Consensus 118 ~l~fi~l~~-s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 118 QLHFILLSA-SFEVILKRLKKRK 139 (191)
T ss_pred eEEEeeeec-cHHHHHHHHhhcc
Confidence 456788887 8999999999995
No 139
>PRK00131 aroK shikimate kinase; Reviewed
Probab=35.50 E-value=1.6e+02 Score=21.80 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.4
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
..++|||.+| .+.+.+|+.+|.
T Consensus 97 ~~~~v~l~~~-~~~~~~R~~~~~ 118 (175)
T PRK00131 97 RGTVVYLDAS-FEELLRRLRRDR 118 (175)
T ss_pred CCEEEEEECC-HHHHHHHhcCCC
Confidence 3578999986 488999998765
No 140
>PLN02348 phosphoribulokinase
Probab=35.35 E-value=62 Score=29.27 Aligned_cols=86 Identities=12% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHH-cCCCCceEEEEEcCCCHHHH----H
Q psy9156 42 DMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRA-GGAMAGAVYVFVKPPSIEEL----E 116 (177)
Q Consensus 42 eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~-~~~~~~~~~IfI~pps~~~L----~ 116 (177)
++-+.+++|+=+++-.|+- -=|..... ..+...+++|+ +|.-.+... ... .--+.|||.+|..-.+ +
T Consensus 131 ~~L~~Lk~G~~I~~PiYDh-~tg~~~~~--e~I~p~~VVIV----EGlh~L~~e~lr~-l~D~~IyVd~~~dvrl~RRI~ 202 (395)
T PLN02348 131 EQVKALKEGKAVEKPIYNH-VTGLLDPP--ELIEPPKILVI----EGLHPMYDERVRD-LLDFSIYLDISDDVKFAWKIQ 202 (395)
T ss_pred HHHHHHHCCCcEEeecccc-CCCCcCCc--EEcCCCcEEEE----echhhccCccccc-cCcEEEEEECCHHHHHHHHHH
Confidence 3344556676666655532 12222111 12445667777 666554421 111 2347899998752322 2
Q ss_pred HHHhhcCCCCHHHHHHHHHH
Q psy9156 117 TRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 117 ~RL~~Rg~es~e~I~~RL~~ 136 (177)
+.+..||. +.+++.++++.
T Consensus 203 RD~~eRG~-S~EeV~~~i~a 221 (395)
T PLN02348 203 RDMAERGH-SLESIKASIEA 221 (395)
T ss_pred hhHhhcCC-CHHHHHHHHHh
Confidence 33445675 78888888754
No 141
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=34.78 E-value=2.3e+02 Score=22.51 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred CcceE-eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCC
Q psy9156 32 GKAYH-FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPP 110 (177)
Q Consensus 32 G~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pp 110 (177)
.+.+. +++.+++.+...+-.++-..... .|.+ -.+-+++..|+++|. -+..|...+.... ...+++.+.
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~~i~~~~~---~~~~-~~~~Ea~~~G~pvI~-~~~~~~~~~~~~~-----~~g~~~~~~ 329 (377)
T cd03798 260 RVTFLGAVPHEEVPAYYAAADVFVLPSLR---EGFG-LVLLEAMACGLPVVA-TDVGGIPEIITDG-----ENGLLVPPG 329 (377)
T ss_pred eEEEeCCCCHHHHHHHHHhcCeeecchhh---ccCC-hHHHHHHhcCCCEEE-ecCCChHHHhcCC-----cceeEECCC
Confidence 34444 78999998888887776543322 4555 336667888998766 3444555444333 224677888
Q ss_pred CHHHHHHHHhhcC
Q psy9156 111 SIEELETRLRGRG 123 (177)
Q Consensus 111 s~~~L~~RL~~Rg 123 (177)
+.+.+.+.|..--
T Consensus 330 ~~~~l~~~i~~~~ 342 (377)
T cd03798 330 DPEALAEAILRLL 342 (377)
T ss_pred CHHHHHHHHHHHh
Confidence 8888877765544
No 142
>PRK14530 adenylate kinase; Provisional
Probab=34.63 E-value=77 Score=25.23 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHhCCCeEEEEecHHHHHHHH---HHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 72 AVINSGKTCVLDIEVQGVQQVK---RAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 72 ~~~~~gk~~il~id~~G~~~lk---~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
+.+.+....|++--+....+.. +.. ..-.+|++..|. +.+.+||.+|..
T Consensus 77 ~~l~~~~~~IldG~pr~~~q~~~l~~~~---~~d~vI~Ld~~~-~~l~~Rl~~R~~ 128 (215)
T PRK14530 77 EALSDADGFVLDGYPRNLEQAEYLESIT---DLDVVLYLDVSE-EELVDRLTGRRV 128 (215)
T ss_pred HHHhcCCCEEEcCCCCCHHHHHHHHHhc---CCCEEEEEeCCH-HHHHHHHhCCCc
Confidence 3444445567764443333322 222 234578888875 899999999964
No 143
>PRK13949 shikimate kinase; Provisional
Probab=34.59 E-value=2.1e+02 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=21.8
Q ss_pred ecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhh
Q psy9156 84 IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRG 121 (177)
Q Consensus 84 id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~ 121 (177)
+++++...|++.. ++||+..|. +.+.+|++.
T Consensus 83 ~~~~~~~~l~~~~------~vi~L~~~~-~~~~~Ri~~ 113 (169)
T PRK13949 83 CFFDNMELMNASG------TTVYLKVSP-EVLFVRLRL 113 (169)
T ss_pred CCHHHHHHHHhCC------eEEEEECCH-HHHHHHHhc
Confidence 4566666665433 578999874 889999974
No 144
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.07 E-value=2.1e+02 Score=28.68 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred cCCeEEEEE-eCCceeeec----HHHHHHHHhCCCeEEEEecHHHHHHHHHHc------------CCC-C--ceEEEEEc
Q psy9156 49 AGEFLEHAE-FAANLYGTS----RAAVEAVINSGKTCVLDIEVQGVQQVKRAG------------GAM-A--GAVYVFVK 108 (177)
Q Consensus 49 ~g~FlE~~~-~~G~~YGt~----~~~i~~~~~~gk~~il~id~~G~~~lk~~~------------~~~-~--~~~~IfI~ 108 (177)
.-..+.-.+ .|-|-.|.. +++|+++++.|-+|...+++|=+.+|-..- |+. + .--++.|.
T Consensus 100 ~P~lvLvDELAHTNa~gsrh~KR~qDiEelL~aGIDV~TT~NvQHlESLnDvV~~iTgv~VrE~VPD~v~d~AD~v~lVD 179 (890)
T COG2205 100 RPALVLVDELAHTNAPGSRHPKRWQDIEELLAAGIDVYTTVNVQHLESLNDVVAGITGVRVRETVPDRVFDEADEVELVD 179 (890)
T ss_pred CCCEEEeehhhccCCCCCCCcchhhhHHHHHHcCCeeEEeehhhhHhHHHHHHHhccCeEEeeeCChhHhcccCeEEEec
Confidence 455555555 566777764 688999999999999999999999887532 110 0 11234444
Q ss_pred CCCHHHHHHHHhhcCCCCHHHHHHHHH
Q psy9156 109 PPSIEELETRLRGRGTETEDSLRRRLD 135 (177)
Q Consensus 109 pps~~~L~~RL~~Rg~es~e~I~~RL~ 135 (177)
-| .++|.+||..-.=--++.++.=++
T Consensus 180 i~-P~~L~~RL~~GKVY~~~~a~~A~~ 205 (890)
T COG2205 180 IP-PDDLRERLKEGKVYAPEQAERALE 205 (890)
T ss_pred CC-HHHHHHHHHcCCccCHHHHHHHHH
Confidence 33 389999997654444555554443
No 145
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=34.04 E-value=2e+02 Score=23.55 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHH
Q psy9156 40 RADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRL 119 (177)
Q Consensus 40 ~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL 119 (177)
.+++.+...+-..+-....... |.+ -.+-+++..|.+||. -|..|...+.... . ..+.+.+.+.+.+.+.+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e--~~~-~~l~EA~a~G~PvI~-~~~~~~~e~i~~~---~--~g~~~~~~~~~~l~~~i 324 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPE--AFG-RTAVEAQAMGRPVIA-SDHGGARETVRPG---E--TGLLVPPGDAEALAQAL 324 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCC--CCc-hHHHHHHhcCCCEEE-cCCCCcHHHHhCC---C--ceEEeCCCCHHHHHHHH
Confidence 4455566655555443322222 333 346777889988776 4555665555443 2 34455677888888877
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q psy9156 120 RGRGTETEDSLRRRLDLARRD 140 (177)
Q Consensus 120 ~~Rg~es~e~I~~RL~~a~~e 140 (177)
...-..++++.++.-++|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~a~~~ 345 (355)
T cd03819 325 DQILSLLPEGRAKMFAKARMC 345 (355)
T ss_pred HHHHhhCHHHHHHHHHHHHHH
Confidence 544334555555554444443
No 146
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=33.64 E-value=1.7e+02 Score=20.56 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred HHHHhhhCCCceeeeeeeecCCCCCCC--CCCcceE-eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCe
Q psy9156 3 SILFFQDYPDRFGFSVSHTTRGPRPGE--VDGKAYH-FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 3 ~~~Ll~~~p~~f~~~is~TTR~~R~gE--~~G~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~ 79 (177)
.++|.+.+|+ +.+.+-.. -+++-.+ .+++.++ ++ +++.+.+++..+.-.....+. |++ ..+-+.+..|++
T Consensus 25 ~~~l~~~~p~-~~l~i~G~-~~~~l~~~~~~~v~~~g~~--~e~~~~l~~~dv~l~p~~~~~--~~~-~k~~e~~~~G~p 97 (135)
T PF13692_consen 25 LERLKEKHPD-IELIIIGN-GPDELKRLRRPNVRFHGFV--EELPEILAAADVGLIPSRFNE--GFP-NKLLEAMAAGKP 97 (135)
T ss_dssp HHHHHHHSTT-EEEEEECE-SS-HHCCHHHCTEEEE-S---HHHHHHHHC-SEEEE-BSS-S--CC--HHHHHHHCTT--
T ss_pred HHHHHHHCcC-EEEEEEeC-CHHHHHHhcCCCEEEcCCH--HHHHHHHHhCCEEEEEeeCCC--cCc-HHHHHHHHhCCC
Confidence 4567777886 55555333 2221111 2355555 45 689999999888775443333 666 446667789988
Q ss_pred EEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHh
Q psy9156 80 CVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLR 120 (177)
Q Consensus 80 ~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~ 120 (177)
+|. .+. |...+.... ...+++ +.+.+.+.+.+.
T Consensus 98 vi~-~~~-~~~~~~~~~-----~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 98 VIA-SDN-GAEGIVEED-----GCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp EEE-EHH-HCHCHS--------SEEEE--TT-HHHHHHHHH
T ss_pred EEE-CCc-chhhheeec-----CCeEEE-CCCHHHHHHHHH
Confidence 777 333 555554433 233444 667788877654
No 147
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=33.43 E-value=1.8e+02 Score=25.30 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCeEEEEe---cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCC
Q psy9156 68 AAVEAVINSGKTCVLDI---EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es 126 (177)
..|+.++.+|+.+|++. .|.-.+.....+ .+.+.+++..+|.+.+++|...|+..+
T Consensus 181 ~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~---~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 181 AVIERALKEGISVIIEGVHIVPGFIKEKYLEN---PNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHHHHhCCcEEEecCCCCHHHHHHhhhcC---CCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 44777888999988853 444333322344 566777777789899999988886543
No 148
>TIGR02563 cas_Csy4 CRISPR-associated protein, Csy4 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.
Probab=33.15 E-value=60 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=27.3
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
.+-++.. +|.+.+++|+.+|+..++|+...++....+
T Consensus 98 ~~r~~~~-~s~~r~~rR~~~r~~~~~e~~~~~~~~~~~ 134 (185)
T TIGR02563 98 VRRKQTK-SSAARLRRRLERRQGINDEEARPRAPDKTT 134 (185)
T ss_pred EEEEecc-CCHHHHHHHHHHhcCCchHHHhhhhhhhhh
Confidence 3445555 488999999999999998888887765433
No 149
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=33.03 E-value=26 Score=21.40 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.8
Q ss_pred CCCCcceEeeCHHHHH
Q psy9156 29 EVDGKAYHFVTRADME 44 (177)
Q Consensus 29 E~~G~dY~Fvs~~eF~ 44 (177)
+-+|..|+|.|+.--+
T Consensus 19 ~y~G~~Y~FCS~~C~~ 34 (47)
T PF04945_consen 19 EYNGRTYYFCSEGCKE 34 (47)
T ss_dssp EETTEEEEESSHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 5789999999986543
No 150
>PHA02591 hypothetical protein; Provisional
Probab=32.77 E-value=1.8e+02 Score=20.53 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=39.0
Q ss_pred HHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCC-CHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 69 AVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPP-SIEELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pp-s~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
.|++.++. ..|+.++.- +.+++.-. ..-.--||... +.-.+..+|.++|- |.++|.+.|.-..+.+
T Consensus 10 ~~~~~~~~-~~~~~~~~~---~~m~k~vq--v~~~ryfi~~~dd~~~vA~eL~eqGl-SqeqIA~~LGVsqetV 76 (83)
T PHA02591 10 KIEKTLNT-SLCICYIGE---KKMQKVVQ--VGQTRYFVESEDDLISVTHELARKGF-TVEKIASLLGVSVRKV 76 (83)
T ss_pred HHHHhhcC-eeEEEEhhh---HhHHHhhe--eCCEEEEEeccchHHHHHHHHHHcCC-CHHHHHHHhCCCHHHH
Confidence 35555543 456665544 44444321 23344566543 33446789999994 9999998886654433
No 151
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=31.95 E-value=31 Score=23.18 Aligned_cols=17 Identities=53% Similarity=0.536 Sum_probs=14.2
Q ss_pred ceeeecHHHHHHHHhCC
Q psy9156 61 NLYGTSRAAVEAVINSG 77 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~g 77 (177)
..||.|+++|++++-.|
T Consensus 47 F~YsLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 47 FPYSLSREDVEAAIFSG 63 (63)
T ss_pred ccCcCCHHHHHHHHhcC
Confidence 46999999999988665
No 152
>PRK11032 hypothetical protein; Provisional
Probab=31.79 E-value=48 Score=26.25 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc-------hhhhhhcccccchhhhh
Q psy9156 113 EELETRLRGRGTETEDSLRRRLDLARRDMSYGK-------DSLRSYGKNSLRSYVEA 162 (177)
Q Consensus 113 ~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~-------~~~~~~~~~~~~~~~~~ 162 (177)
+.|-+|+..+-.+++++++.-++.|++-+..+. ..+..|.++||.+|..-
T Consensus 9 ~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~ 65 (160)
T PRK11032 9 RELVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRAVRRDLEEFARS 65 (160)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544566678877887766443333 23667788888888553
No 153
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=31.78 E-value=9.6 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.3
Q ss_pred CCCcceEeeCHHHHHHH
Q psy9156 30 VDGKAYHFVTRADMEER 46 (177)
Q Consensus 30 ~~G~dY~Fvs~~eF~~~ 46 (177)
.+|..|+|++.+.|+|.
T Consensus 10 ~dg~~~~FMd~etyeQ~ 26 (61)
T cd04470 10 KDGDNYVFMDTETYEQI 26 (61)
T ss_pred eCCCEEEEeCCCCceEE
Confidence 36889999999999873
No 154
>PRK10490 sensor protein KdpD; Provisional
Probab=31.62 E-value=1.5e+02 Score=29.33 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=66.7
Q ss_pred ceEeeCHHHHH--HHHHcC-CeEEEEE-----eCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCC-------
Q psy9156 34 AYHFVTRADME--ERIAAG-EFLEHAE-----FAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGA------- 98 (177)
Q Consensus 34 dY~Fvs~~eF~--~~i~~g-~FlE~~~-----~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~------- 98 (177)
+|.-+.-+||+ ..++.. +.+.-.+ ..|...--.+++|+++++.|-+|+-.+++|=..++......
T Consensus 84 ~~~~~~~~e~d~~~~l~~~p~~~lvdelah~n~~g~~~~kr~qdv~~ll~~gi~v~tt~n~qh~esl~~~v~~~t~~~~~ 163 (895)
T PRK10490 84 HHRGRHISEFDLDAALARRPALILMDELAHSNAPGSRHPKRWQDVEELLEAGIDVFTTVNVQHLESLNDVVGGVTGIQVR 163 (895)
T ss_pred eECCeeccccCHHHHHhCCCCEEEEeccccCCCCCCCCCccHhhHHHHHHCCCeEEeechHHHhhhhHHHHHHccCCccC
Confidence 34444444443 222222 5554443 44666667889999999999999999999999888753210
Q ss_pred --CCc------eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 99 --MAG------AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 99 --~~~------~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
.++ --+++|..|. ++|.+||+.-.--.+++++.-|++
T Consensus 164 e~~pd~~~~~a~~~~~vd~~p-~~l~~rl~~g~vy~~~~~~~a~~~ 208 (895)
T PRK10490 164 ETVPDPFFDAADEVVLVDLPP-DDLRQRLNEGKVYIAGQAERAIEH 208 (895)
T ss_pred CcCCHHHHhhcCeEEEecCCH-HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 011 1356777654 899999987665667777766655
No 155
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=30.86 E-value=79 Score=22.60 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=27.3
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEe
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDI 84 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~i 84 (177)
.||.++|..+| |-+.++|...+++||.+++.+
T Consensus 12 ~v~~~~FA~~I----------------GKt~sAVr~Mi~~gKLP~i~~ 43 (87)
T PF10743_consen 12 AVTYEKFAEYI----------------GKTPSAVRKMIKAGKLPVIEM 43 (87)
T ss_pred ccCHHHHHHHH----------------CCCHHHHHHHHHcCCCCeEec
Confidence 47888888765 778899999999999998855
No 156
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=30.36 E-value=2.4e+02 Score=23.79 Aligned_cols=100 Identities=17% Similarity=0.301 Sum_probs=49.4
Q ss_pred CcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHH-------HHcCCCCceEE
Q psy9156 32 GKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVK-------RAGGAMAGAVY 104 (177)
Q Consensus 32 G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk-------~~~~~~~~~~~ 104 (177)
+.+.+.++.+.+. +..+.|. -.......=|.-+.+|++.+.+..++|+| |.+=++.+| +.++ ..-.+
T Consensus 29 ~~~v~~i~~~~~~--~~~~~y~-~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D-d~nYiKg~RYelyclAr~~~--~~~c~ 102 (270)
T PF08433_consen 29 GKEVVIISDDSLG--IDRNDYA-DSKKEKEARGSLKSAVERALSKDTIVILD-DNNYIKGMRYELYCLARAYG--TTFCV 102 (270)
T ss_dssp T--EEEE-THHHH---TTSSS---GGGHHHHHHHHHHHHHHHHTT-SEEEE--S---SHHHHHHHHHHHHHTT---EEEE
T ss_pred CCEEEEEcccccc--cchhhhh-chhhhHHHHHHHHHHHHHhhccCeEEEEe-CCchHHHHHHHHHHHHHHcC--CCEEE
Confidence 4455667766655 3333321 00111223466778888888888766654 333344444 3333 45677
Q ss_pred EEEcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHH
Q psy9156 105 VFVKPPSIEELETRLRGRGT---ETEDSLRRRLDLAR 138 (177)
Q Consensus 105 IfI~pps~~~L~~RL~~Rg~---es~e~I~~RL~~a~ 138 (177)
||+..| .+...+|=.+|+. .+++.|.+...+.+
T Consensus 103 i~~~~~-~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE 138 (270)
T PF08433_consen 103 IYCDCP-LETCLQRNSKRPEPERYPEETIDDMIQRFE 138 (270)
T ss_dssp EEEE---HHHHHHHHHHTT-S--S-HHHHHHHHHH--
T ss_pred EEECCC-HHHHHHhhhccCCCCCCCHHHHHHHHHHhc
Confidence 999987 5888888888873 24566666655543
No 157
>PHA02150 hypothetical protein
Probab=30.24 E-value=37 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.6
Q ss_pred ceEeeCHHHHHHHHHc
Q psy9156 34 AYHFVTRADMEERIAA 49 (177)
Q Consensus 34 dY~Fvs~~eF~~~i~~ 49 (177)
-|.|||+++|..--++
T Consensus 2 ~yrfvseeqfnaw~~q 17 (77)
T PHA02150 2 LYRFVSEEQFNAWSSQ 17 (77)
T ss_pred ceeeccHHHhhHHHhh
Confidence 4889999999876544
No 158
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=30.16 E-value=36 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.8
Q ss_pred eeeecHHHHHHHHhCCCeEEEEecHHH
Q psy9156 62 LYGTSRAAVEAVINSGKTCVLDIEVQG 88 (177)
Q Consensus 62 ~YGt~~~~i~~~~~~gk~~il~id~~G 88 (177)
.-|++..+|.+++..|+.+.+.+..+|
T Consensus 21 ~lGV~Q~AIsKAlr~gR~I~v~~~~dG 47 (59)
T PF09048_consen 21 ALGVTQSAISKALRAGRNIFVTIMPDG 47 (59)
T ss_dssp HHTS-HHHHHHHHHCT-EEEEEEETTS
T ss_pred HcCCcHHHHHHHHHcCCcEEEEEcCCC
Confidence 458888999999999999999888776
No 159
>PRK13973 thymidylate kinase; Provisional
Probab=29.75 E-value=2.9e+02 Score=21.99 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCeEEEEecH------HH---------HHHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 68 AAVEAVINSGKTCVLDIEV------QG---------VQQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~------~G---------~~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..|...+++|++||+|=-. +| +..+...... ...-++||+..|. +++.+|+.+|+.
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~-e~~~~Rl~~R~~ 151 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPA-EVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhccC
Confidence 3466677888877765432 11 2223221111 0234567777764 899999999864
No 160
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=29.71 E-value=3.5e+02 Score=22.92 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=49.7
Q ss_pred CCcceE-eeCHHHHHHHHHcCCeEEEEEe-----CCc--eeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCce
Q psy9156 31 DGKAYH-FVTRADMEERIAAGEFLEHAEF-----AAN--LYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGA 102 (177)
Q Consensus 31 ~G~dY~-Fvs~~eF~~~i~~g~FlE~~~~-----~G~--~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~ 102 (177)
+.+.|. +++.++.....+.+--+-|..- .|+ .|..| .-+...+..|.++|+.-+. +...+-+..+
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P-~K~~~ymA~G~PVI~~~~~-~~~~~V~~~~----- 279 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNP-HKLSLYLAAGLPVIVWSKA-AIADFIVENG----- 279 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccch-HHHHHHHHCCCCEEECCCc-cHHHHHHhCC-----
Confidence 457777 8999999988877433333221 122 25666 3355578999998875443 4444444431
Q ss_pred EEEEEcCCCHHHHHHHHhh
Q psy9156 103 VYVFVKPPSIEELETRLRG 121 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~ 121 (177)
..+.+ ++.+++.+.|..
T Consensus 280 ~G~~v--~~~~el~~~l~~ 296 (333)
T PRK09814 280 LGFVV--DSLEELPEIIDN 296 (333)
T ss_pred ceEEe--CCHHHHHHHHHh
Confidence 23333 367889988875
No 161
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=29.37 E-value=85 Score=21.65 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhhh
Q psy9156 118 RLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVEA 162 (177)
Q Consensus 118 RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~~ 162 (177)
--..||+.+.+++..-++.|..+. ......+..++-.+.+|+++
T Consensus 25 mwiGRGd~~~eew~~a~~~A~~~~-~~~ta~YLl~~p~ladyLe~ 68 (75)
T PF12616_consen 25 MWIGRGDFEAEEWEEAVAEARERA-SARTADYLLGTPMLADYLEE 68 (75)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhc-cchHHHHHHcCCcHHHHHHH
Confidence 346899999999999999998765 22233334477788888775
No 162
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.83 E-value=1.8e+02 Score=20.16 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=31.3
Q ss_pred HHHHHhCC-CeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHH
Q psy9156 70 VEAVINSG-KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELET 117 (177)
Q Consensus 70 i~~~~~~g-k~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~ 117 (177)
++...+.+ +.++++-|++-++.++..+ . -+|+-.+-+.+.|++
T Consensus 14 ~~~L~~~~~~vvvid~d~~~~~~~~~~~---~--~~i~gd~~~~~~l~~ 57 (116)
T PF02254_consen 14 AEQLKEGGIDVVVIDRDPERVEELREEG---V--EVIYGDATDPEVLER 57 (116)
T ss_dssp HHHHHHTTSEEEEEESSHHHHHHHHHTT---S--EEEES-TTSHHHHHH
T ss_pred HHHHHhCCCEEEEEECCcHHHHHHHhcc---c--ccccccchhhhHHhh
Confidence 34445555 5888999999999998776 3 377888888888875
No 163
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=28.61 E-value=86 Score=25.97 Aligned_cols=58 Identities=17% Similarity=0.406 Sum_probs=39.6
Q ss_pred eCHHHHHHHH-----HcCCeEEEEEe---CCceeeecHHHHH--HHHhCCCeEEEEe-------cHHHHHHHHHHc
Q psy9156 38 VTRADMEERI-----AAGEFLEHAEF---AANLYGTSRAAVE--AVINSGKTCVLDI-------EVQGVQQVKRAG 96 (177)
Q Consensus 38 vs~~eF~~~i-----~~g~FlE~~~~---~G~~YGt~~~~i~--~~~~~gk~~il~i-------d~~G~~~lk~~~ 96 (177)
.|.+.|.+.+ +.|--++-|-| .|+-||-| ++|+ -+++.|.+++++| |..-++..+..|
T Consensus 114 lsEdAFR~gv~eil~e~g~~v~rw~~yDkeG~VYg~P-S~VE~DvvVKDg~vvlVEItS~ikrgDl~~i~rk~elY 188 (231)
T COG5493 114 LSEDAFRQGVREILREVGYVVERWLYYDKEGHVYGHP-SDVEYDVVVKDGVVVLVEITSAIKRGDLPVIRRKKELY 188 (231)
T ss_pred ccHHHHHHHHHHHHHHhchheeeEEEEcCCcceecCC-cceEEEEEEecCcEEEEEehhhhhccchHHHHHHHHHH
Confidence 7889998865 45777776665 48999999 4443 3567888888887 444455544433
No 164
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=28.52 E-value=63 Score=28.83 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=25.8
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
-.+|||.+|. +...+|+..|...+.++...|+..
T Consensus 125 D~iI~V~ap~-e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 125 HLVVVVDADV-EVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred CEEEEEECCH-HHHHHHHHhcCCCCHHHHHHHHHh
Confidence 3678999864 888899988433577888888866
No 165
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=28.13 E-value=3e+02 Score=21.70 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=47.8
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELE 116 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~ 116 (177)
+++.+++.+..++..++-..... .|.+ -.+-+++..|+++|. .+..|...+-... ...+++.+.+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~di~i~~~~~---~~~~-~~~~Ea~~~g~pvI~-~~~~~~~~~~~~~-----~~g~~~~~~~~~~l~ 332 (374)
T cd03801 263 FVPDEDLPALYAAADVFVLPSLY---EGFG-LVLLEAMAAGLPVVA-SDVGGIPEVVEDG-----ETGLLVPPGDPEALA 332 (374)
T ss_pred ccChhhHHHHHHhcCEEEecchh---cccc-chHHHHHHcCCcEEE-eCCCChhHHhcCC-----cceEEeCCCCHHHHH
Confidence 67888888888887776554333 4445 346667888987665 4444555544332 334566666678888
Q ss_pred HHHhh
Q psy9156 117 TRLRG 121 (177)
Q Consensus 117 ~RL~~ 121 (177)
+.+.+
T Consensus 333 ~~i~~ 337 (374)
T cd03801 333 EAILR 337 (374)
T ss_pred HHHHH
Confidence 77655
No 166
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=27.46 E-value=63 Score=26.26 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=24.5
Q ss_pred HhCCCeEEEEecHHHHHHHHHH------cCCCCceEEEEEcCCCHHHHHHHHhhc
Q psy9156 74 INSGKTCVLDIEVQGVQQVKRA------GGAMAGAVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 74 ~~~gk~~il~id~~G~~~lk~~------~~~~~~~~~IfI~pps~~~L~~RL~~R 122 (177)
+....++|+ +|.-.+... ..+ .--+.|||.+|. +.+++||.+|
T Consensus 101 ~~~~~vvIv----EG~~~l~~~~~~~~~l~~-~~D~~ifvd~~~-~~~~~rl~~R 149 (220)
T cd02025 101 VDQPDILII----EGLNVLQTGQNPRLFVSD-FFDFSIYVDADE-DDIEKWYIKR 149 (220)
T ss_pred cCCCCEEEE----CCchhcCCcccchhhHHH-hCCeEEEEECCH-HHHHHHHHHH
Confidence 345667777 565444321 100 123679999987 7766555555
No 167
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=26.88 E-value=1.4e+02 Score=23.20 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=38.3
Q ss_pred HHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHH-HHHHHHcCCCCceEEEEEcCCCHHHHHHHH----
Q psy9156 45 ERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGV-QQVKRAGGAMAGAVYVFVKPPSIEELETRL---- 119 (177)
Q Consensus 45 ~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~-~~lk~~~~~~~~~~~IfI~pps~~~L~~RL---- 119 (177)
+.+.+|+-++.-.|.-...... .. .......+++|++--.-.. ..++..+ -+.|||.+|.--.|.+|+
T Consensus 77 ~~L~~g~~i~~p~yd~~~~~~~-~~-~~~~~~~~ivIvEG~~~l~~~~l~~l~-----D~~ifld~~~~~~l~Rri~RD~ 149 (194)
T PF00485_consen 77 KALKNGGSIEIPIYDFSTGDRD-PW-IIIISPSDIVIVEGIYALYDEELRDLF-----DLKIFLDADEDLRLERRIQRDV 149 (194)
T ss_dssp HHHHTTSCEEEEEEETTTTEEE-EE-EEEEES-SEEEEEETTTTSSHCHGGG------SEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHhCCCcccccccccccccce-ee-eeecCCCCEEEEcccceeeeeeecccc-----eeEEEecccHHHHHHHHhhhhc
Confidence 4456677777766642221111 00 0012345677774322111 1233333 378999986533455443
Q ss_pred hhcCCCCHHHHHHHHHHH
Q psy9156 120 RGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 120 ~~Rg~es~e~I~~RL~~a 137 (177)
..||. +.+++..+....
T Consensus 150 ~~rG~-~~~~~~~~~~~~ 166 (194)
T PF00485_consen 150 AERGR-SPEEVIAQYERV 166 (194)
T ss_dssp HHS-S--HHHHHHHHHTH
T ss_pred cccCC-cceeEEEEeecC
Confidence 34676 566666665533
No 168
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=26.62 E-value=1e+02 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 105 VFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 105 IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
+.+.|++..++.+|| ++|+++++....|+
T Consensus 7 viv~~~~~~~i~~rL--------d~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 7 VIVDPDDFNEIMKRL--------DEIEEKVEFTNAEI 35 (70)
T ss_pred eeeCHHHHHHHHHHH--------HHHHHHHHhHHHHH
Confidence 556777777777777 35777777666665
No 169
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=26.56 E-value=2.8e+02 Score=20.86 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=28.1
Q ss_pred HHHHHhCCCeEEEEe------cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 70 VEAVINSGKTCVLDI------EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 70 i~~~~~~gk~~il~i------d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
+.+++... .+|+.+ ..+....|++. ..+|||..| .+.+.+||..++.
T Consensus 55 l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~~~------g~vI~L~~~-~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 55 LRELLKEN-NCVIACGGGIVLKEENRELLKEN------GLVIYLDAD-PEELAERLRARDN 107 (158)
T ss_dssp HHHHHCSS-SEEEEE-TTGGGSHHHHHHHHHH------SEEEEEE---HHHHHHHHHHHCT
T ss_pred HHHHhccC-cEEEeCCCCCcCcHHHHHHHHhC------CEEEEEeCC-HHHHHHHHhCCCC
Confidence 44455443 555555 33444444423 468999864 6999999988875
No 170
>COG1160 Predicted GTPases [General function prediction only]
Probab=26.41 E-value=44 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCC--CCCCcceEeeCHHHHHHHHH
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRADMEERIA 48 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~g--E~~G~dY~Fvs~~eF~~~i~ 48 (177)
|+++|+.+.. .+...++-|||.+-.. |.+|..|.+++-.-+.+..+
T Consensus 194 LiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 194 LINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred HHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 6788888764 5888999999999655 45599999988777666533
No 171
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=26.18 E-value=1.3e+02 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=22.8
Q ss_pred eEEEEEcCCCHHHHH---HHHhh-cCCCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELE---TRLRG-RGTETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~---~RL~~-Rg~es~e~I~~RL~~a 137 (177)
-+.|||.+|....++ +|..+ || -+.+++.++++..
T Consensus 117 D~~I~vd~~~e~r~~r~i~Rd~~rrG-~s~e~v~~~i~~r 155 (273)
T cd02026 117 DFSVYLDISDEVKFAWKIQRDMAERG-HSLEDVLASIEAR 155 (273)
T ss_pred cEEEEEECChhHHHHHHHHHHHHHhC-CCHHHHHHHHHhh
Confidence 468999988643322 34444 46 4788888888643
No 172
>PRK06620 hypothetical protein; Validated
Probab=25.99 E-value=2.1e+02 Score=23.06 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=38.7
Q ss_pred HHHHhCCCeEEEEec--HHH--HHHHHHHcCCCCceEEEEEcCCCHHHHHHHH----hhcCC-CCHHHHHHHHHHHHHHh
Q psy9156 71 EAVINSGKTCVLDIE--VQG--VQQVKRAGGAMAGAVYVFVKPPSIEELETRL----RGRGT-ETEDSLRRRLDLARRDM 141 (177)
Q Consensus 71 ~~~~~~gk~~il~id--~~G--~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL----~~Rg~-es~e~I~~RL~~a~~e~ 141 (177)
+...++|+.+|+..+ +.. ...|+.+. ....++-|.||+.+.+..-+ ..||- -+++.++.-+.+...++
T Consensus 107 N~~~e~g~~ilits~~~p~~l~l~~L~SRl---~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 107 NIINEKQKYLLLTSSDKSRNFTLPDLSSRI---KSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHhcCCEEEEEcCCCccccchHHHHHHH---hCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence 333477887777664 222 25677777 45678889999976654433 23442 34555444444444333
No 173
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=25.69 E-value=1.8e+02 Score=25.40 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=49.3
Q ss_pred EEEEEeCCce----eeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceE--------EEEEcCCCHHHHHHHHh
Q psy9156 53 LEHAEFAANL----YGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAV--------YVFVKPPSIEELETRLR 120 (177)
Q Consensus 53 lE~~~~~G~~----YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~--------~IfI~pps~~~L~~RL~ 120 (177)
+....++|+- |-.....++.+...++++++++.+.=. ...... ..+. -.+-.+..+..++++|.
T Consensus 208 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~---~gH~~~-D~~~~YR~~~e~~~~~~~Dpi~~~~~~L~ 283 (341)
T TIGR03181 208 IPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRL---GPHTTA-DDPTRYRTKEEEEEWRKKDPILRLRKYLE 283 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecC---CCCCCC-CCCccCCCHHHHHHHhcCCHHHHHHHHHH
Confidence 3344455542 223345667776667788887744211 100000 0010 01122223566888999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhcchh
Q psy9156 121 GRGTETEDSLRRRLDLARRDMSYGKDS 147 (177)
Q Consensus 121 ~Rg~es~e~I~~RL~~a~~e~~~~~~~ 147 (177)
.+|--++++++..-+.++.+++.+...
T Consensus 284 ~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 284 RKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999778888777777777776655443
No 174
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=25.55 E-value=2.1e+02 Score=20.11 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCeEEEEecHH--HHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDIEVQ--GVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~--G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
++|.+.+++. -+++.+|.. ...++...++...-|.++||.|-+-+ +..|+. |..+++++..+|..+..
T Consensus 43 ~~v~~~l~~~-~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~-~l~~~~--G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 43 ESVKEFIREN-FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE-VLKVWS--GNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHHHhC-EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc-EeEEEc--CCCCHHHHHHHHHHHHh
Confidence 5567777653 455556664 23445555543346889999874423 333443 55678888888887654
No 175
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.35 E-value=5.9e+02 Score=24.96 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHcCCeEEEEEeCCceeeecHHHHHHHHh-------CCCeEEEEe------cHHHHHHHHHHcCC-CCceEEEEEc
Q psy9156 43 MEERIAAGEFLEHAEFAANLYGTSRAAVEAVIN-------SGKTCVLDI------EVQGVQQVKRAGGA-MAGAVYVFVK 108 (177)
Q Consensus 43 F~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~-------~gk~~il~i------d~~G~~~lk~~~~~-~~~~~~IfI~ 108 (177)
.-++|++|.|..+-++++-. .+..++|+++++ .|+..|+.| +.++...|.+...+ -.+.++|+++
T Consensus 83 sC~~I~aG~hpDviEIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHcCCCCcceEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 34566777777776665532 245666666554 244344444 45667777766532 1245667776
Q ss_pred CCCHHHHHHHHhhc------CCCCHHHHHHHHHHH
Q psy9156 109 PPSIEELETRLRGR------GTETEDSLRRRLDLA 137 (177)
Q Consensus 109 pps~~~L~~RL~~R------g~es~e~I~~RL~~a 137 (177)
. +...|-..++.| ...+.++|.++|.+.
T Consensus 162 t-ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 162 T-DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred C-ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 4 334443333333 235677888887754
No 176
>KOG0770|consensus
Probab=24.96 E-value=44 Score=29.03 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCHHHHHHHHhhcCCCC
Q psy9156 101 GAVYVFVKPPSIEELETRLRGRGTET 126 (177)
Q Consensus 101 ~~~~IfI~pps~~~L~~RL~~Rg~es 126 (177)
+.+.=||..|| |+|++||.-.|+.+
T Consensus 138 D~~~SfvYVPs-EVlKtRlQlQGR~n 162 (353)
T KOG0770|consen 138 DTLGSFVYVPS-EVLKTRLQLQGRNN 162 (353)
T ss_pred hhhcceEEeeH-HHHHHHHhHhcccC
Confidence 56667888899 99999998887644
No 177
>PRK07933 thymidylate kinase; Validated
Probab=24.82 E-value=3.7e+02 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.3
Q ss_pred EEEEEcCCCHHHHHHHHhhcCC
Q psy9156 103 VYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
++||+..| .+...+|+.+|+.
T Consensus 135 l~i~Ldv~-~e~a~~Ri~~R~~ 155 (213)
T PRK07933 135 LQVLLDVP-VELAAERARRRAA 155 (213)
T ss_pred EEEEecCC-HHHHHHHHHhhcc
Confidence 66777765 5888999999874
No 178
>PRK06547 hypothetical protein; Provisional
Probab=24.76 E-value=3.4e+02 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
.+.||+.+|. ++..+|+.+|..
T Consensus 119 v~~I~ld~~~-~vr~~R~~~Rd~ 140 (172)
T PRK06547 119 VLTVWLDGPE-ALRKERALARDP 140 (172)
T ss_pred EEEEEEECCH-HHHHHHHHhcCc
Confidence 4899999875 888889999954
No 179
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.56 E-value=3.3e+02 Score=21.00 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=17.3
Q ss_pred EEEEEcCCCHHHHHHHHh----hcCCCCHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLR----GRGTETEDSLRRRL 134 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~----~Rg~es~e~I~~RL 134 (177)
.+|||.+|....+.+|+. .||. +.+++..+.
T Consensus 121 ~~i~v~~~~~~~~~R~~~Rd~~~rg~-~~~~~~~~~ 155 (198)
T cd02023 121 LKIFVDTDADVRLIRRIERDIVERGR-DLESVINQY 155 (198)
T ss_pred eEEEEECChhHHHHHHHHHHhhhcCC-CHHHHHHHH
Confidence 679998876343554442 3454 445444443
No 180
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=24.29 E-value=2.9e+02 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.0
Q ss_pred CceEEEEEcCCCHHHHHHHHhh
Q psy9156 100 AGAVYVFVKPPSIEELETRLRG 121 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~ 121 (177)
....+||+.+| .++|.+|+..
T Consensus 85 ~~~~iI~L~a~-~e~L~~Rl~~ 105 (288)
T PRK05416 85 IDVRVLFLDAS-DEVLIRRYSE 105 (288)
T ss_pred CcEEEEEEECC-HHHHHHHHhh
Confidence 55678999986 4999999974
No 181
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=24.27 E-value=57 Score=20.06 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHhhc
Q psy9156 109 PPSIEELETRLRGR 122 (177)
Q Consensus 109 pps~~~L~~RL~~R 122 (177)
||++++|-+++.+|
T Consensus 20 PPDLdel~r~l~~k 33 (42)
T PF12221_consen 20 PPDLDELFRKLQDK 33 (42)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999998877655
No 182
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.24 E-value=3.2e+02 Score=22.12 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHhCCCeEEEEecHHHH--HHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhc----CCC-CHHHHHHHHHHHHHHh
Q psy9156 70 VEAVINSGKTCVLDIEVQGV--QQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGR----GTE-TEDSLRRRLDLARRDM 141 (177)
Q Consensus 70 i~~~~~~gk~~il~id~~G~--~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~R----g~e-s~e~I~~RL~~a~~e~ 141 (177)
+...++.|+...++-...|- .++.+..++ .+.....||--+|.+.-.+|.+.| |.+ .++.|++|-.+..+.+
T Consensus 62 i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l 141 (187)
T COG4185 62 IARLIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELL 141 (187)
T ss_pred HHHHHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 44456777777666655442 222221111 166666677667766656666555 543 4567999988876666
Q ss_pred -hhcchhhhhhcccccchh
Q psy9156 142 -SYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 142 -~~~~~~~~~~~~~~~~~~ 159 (177)
.+...|++...+++=+-+
T Consensus 142 ~~~l~l~dr~~IydNS~~~ 160 (187)
T COG4185 142 AQALTLADRATIYDNSRLA 160 (187)
T ss_pred HHHHhhcceeEEecCCCCC
Confidence 555677777666654443
No 183
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=24.10 E-value=70 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHH
Q psy9156 30 VDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRA 68 (177)
Q Consensus 30 ~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~ 68 (177)
.|+.-+|||+++|.++++..|+ |+.-+-|..
T Consensus 190 LD~~KHYwV~~dEvdKLlr~Ge--------gWL~~HPer 220 (245)
T PF12623_consen 190 LDDAKHYWVGDDEVDKLLRAGE--------GWLATHPER 220 (245)
T ss_pred ccCCceeeeCHHHHHHHHHcCC--------ChhhcCccH
Confidence 4666789999999999999998 665555533
No 184
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=23.33 E-value=1.4e+02 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=25.1
Q ss_pred ceeeecHHHHHHHHhCC------CeEEEEecHHHHHHHHHHcCCCCceEEEEEcC
Q psy9156 61 NLYGTSRAAVEAVINSG------KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKP 109 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~g------k~~il~id~~G~~~lk~~~~~~~~~~~IfI~p 109 (177)
.+|||+.+....++++| ..+-+..+.+.+...=... ..+++|+|.+
T Consensus 108 lyHGT~~~~~~~I~~~GL~~m~R~hVHls~~~~~a~~sG~R~---~~~V~i~Id~ 159 (186)
T PF01885_consen 108 LYHGTYRKAWPSILEEGLKPMGRNHVHLSTGPETAVISGMRR---SCPVLIYIDA 159 (186)
T ss_dssp EEE--BGGGHHHHHHH-B---SSSSEEEES-HHHHHHHHTTS---SSBEEEEEEH
T ss_pred EEEccchhhHHHHHHhCCCCCCCCEEEEeeccCCceeecCCC---CCeEEEEEcH
Confidence 47888888888888877 3455555533332222222 4678888864
No 185
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=22.93 E-value=4.1e+02 Score=21.44 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=50.6
Q ss_pred CcceE--eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcC
Q psy9156 32 GKAYH--FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKP 109 (177)
Q Consensus 32 G~dY~--Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~p 109 (177)
.+.++ |++.+++...+++..++-....... +|.+ -.+.+++..|+++|. .|..|...+.. ....+++.+
T Consensus 248 ~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~-~~~~-~~~~Ea~a~G~PvI~-~~~~~~~~i~~------~~~g~~~~~ 318 (366)
T cd03822 248 RVIFINRYLPDEELPELFSAADVVVLPYRSAD-QTQS-GVLAYAIGFGKPVIS-TPVGHAEEVLD------GGTGLLVPP 318 (366)
T ss_pred cEEEecCcCCHHHHHHHHhhcCEEEecccccc-cccc-hHHHHHHHcCCCEEe-cCCCChheeee------CCCcEEEcC
Confidence 44454 4888999999988888765433332 4666 346677889997665 45444333321 122455666
Q ss_pred CCHHHHHHHHhhc
Q psy9156 110 PSIEELETRLRGR 122 (177)
Q Consensus 110 ps~~~L~~RL~~R 122 (177)
.|.+.+.+.|..-
T Consensus 319 ~d~~~~~~~l~~l 331 (366)
T cd03822 319 GDPAALAEAIRRL 331 (366)
T ss_pred CCHHHHHHHHHHH
Confidence 6778888776544
No 186
>PRK00114 hslO Hsp33-like chaperonin; Reviewed
Probab=22.85 E-value=2.2e+02 Score=24.40 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=30.0
Q ss_pred eCHHHHHHHHHcCCeEEEE-EeCCceeeecHHHHHHHHhC
Q psy9156 38 VTRADMEERIAAGEFLEHA-EFAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 38 vs~~eF~~~i~~g~FlE~~-~~~G~~YGt~~~~i~~~~~~ 76 (177)
.++++.++++++++-+|-. +|.|..|=.+++++++++++
T Consensus 252 Lg~~El~~i~~e~~~iev~C~FC~~~Y~f~~~dl~~l~~~ 291 (293)
T PRK00114 252 LGKEELQEMIAEDGGAEMVCQFCGNKYLFDEEDLEELIAE 291 (293)
T ss_pred CCHHHHHHHHHcCCCEEEEEeCCCCEEEeCHHHHHHHHhh
Confidence 3455666777887777754 58999999999999988764
No 187
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=22.50 E-value=2.4e+02 Score=26.16 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=43.9
Q ss_pred cceEeeCHHHHHHHHHcCC-------eEEEEE--eCCce-eeecHHHHHHHHhCCCeEEEEecHHHHHH
Q psy9156 33 KAYHFVTRADMEERIAAGE-------FLEHAE--FAANL-YGTSRAAVEAVINSGKTCVLDIEVQGVQQ 91 (177)
Q Consensus 33 ~dY~Fvs~~eF~~~i~~g~-------FlE~~~--~~G~~-YGt~~~~i~~~~~~gk~~il~id~~G~~~ 91 (177)
.+|..++-.+|-+++.+|. ++.-.. -+|+. +|++......+++..+.+|++++++-=+.
T Consensus 95 i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk~VIvEVN~~mP~~ 163 (485)
T TIGR03458 95 VMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELADKVIVEVNTWQPLE 163 (485)
T ss_pred CEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCCEEEEEECCCCChh
Confidence 4577777777888887665 444443 35774 99998888999999999999998864433
No 188
>PRK03839 putative kinase; Provisional
Probab=22.20 E-value=2e+02 Score=21.91 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.0
Q ss_pred EEEEEcCCCHHHHHHHHhhcCC
Q psy9156 103 VYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
++||+..| .+++.+|+.+|+.
T Consensus 82 ~vi~L~~~-~~~~~~Rl~~R~~ 102 (180)
T PRK03839 82 YVIVLRAH-PKIIKERLKERGY 102 (180)
T ss_pred EEEEEECC-HHHHHHHHHHcCC
Confidence 56888865 5999999999975
No 189
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=22.08 E-value=4.2e+02 Score=21.24 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCcceE-eeCHHHHHHHHHcCCeEEEEEeCCc--eeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEE
Q psy9156 31 DGKAYH-FVTRADMEERIAAGEFLEHAEFAAN--LYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFV 107 (177)
Q Consensus 31 ~G~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~--~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI 107 (177)
+.+.++ +++.+++.....+..++-.....+. .+|.+ -.+-+++..|.++|. .+..|...+.... -..+++
T Consensus 275 ~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p-~~~~Ea~~~G~pvi~-~~~~~~~~~~~~~-----~~g~~~ 347 (394)
T cd03794 275 DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSP-SKLFEYMAAGKPVLA-SVDGESAELVEEA-----GAGLVV 347 (394)
T ss_pred CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCc-hHHHHHHHCCCcEEE-ecCCCchhhhccC-----CcceEe
Confidence 344444 5788899888888887766554444 34555 446777888987766 4444544443332 234555
Q ss_pred cCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 108 KPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 108 ~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
.+.+.+.|.+-+.+=- .+++..++.-++|
T Consensus 348 ~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~ 376 (394)
T cd03794 348 PPGDPEALAAAILELL-DDPEERAEMGENG 376 (394)
T ss_pred CCCCHHHHHHHHHHHH-hChHHHHHHHHHH
Confidence 6667788877665443 3444444333333
No 190
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.82 E-value=1.5e+02 Score=19.55 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcc
Q psy9156 114 ELETRLRGRGTETEDSLRRRLDLARRDMSYGK 145 (177)
Q Consensus 114 ~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~ 145 (177)
.+++|| +.+++||+.++.+...+.
T Consensus 29 tiEqRL--------a~LE~rL~~ae~ra~~ae 52 (60)
T PF11471_consen 29 TIEQRL--------AALEQRLQAAEQRAQAAE 52 (60)
T ss_pred CHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 467776 356667777666655443
No 191
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
Probab=21.79 E-value=14 Score=23.61 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=11.2
Q ss_pred CCcceEeeCHHHHHH
Q psy9156 31 DGKAYHFVTRADMEE 45 (177)
Q Consensus 31 ~G~dY~Fvs~~eF~~ 45 (177)
+|..|+|++.+.|+|
T Consensus 10 dgd~~~FMd~etyeQ 24 (55)
T PF01132_consen 10 DGDNYVFMDTETYEQ 24 (55)
T ss_dssp ESSEEEEEETTT--E
T ss_pred CCCEEEEecCCCceE
Confidence 577899999999887
No 192
>KOG3877|consensus
Probab=21.24 E-value=3.9e+02 Score=23.73 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEecHHH----HHHHHHH------------------cCCC-CceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 67 RAAVEAVINSGKTCVLDIEVQG----VQQVKRA------------------GGAM-AGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 67 ~~~i~~~~~~gk~~il~id~~G----~~~lk~~------------------~~~~-~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
.++++-++..|+-||++=.|-. +..++.+ .+.. ..-.+|+|..|- ....+++++||
T Consensus 161 ~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv-~~v~~~Ik~rg 239 (393)
T KOG3877|consen 161 LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPV-NKVLENIKRRG 239 (393)
T ss_pred HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCc-HHHHHHHHhcC
Confidence 4678888999999999876542 2222211 1111 234689999997 67777999998
Q ss_pred CC
Q psy9156 124 TE 125 (177)
Q Consensus 124 ~e 125 (177)
..
T Consensus 240 ~~ 241 (393)
T KOG3877|consen 240 NT 241 (393)
T ss_pred CC
Confidence 53
No 193
>KOG3366|consensus
Probab=21.19 E-value=66 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=33.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhhhhh
Q psy9156 121 GRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVEAS 163 (177)
Q Consensus 121 ~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~~~~ 163 (177)
.+-.+..+...+||++++++++.....-- |-+|.+.+|++|.
T Consensus 101 ~~~ke~~~~s~~~iq~l~k~le~v~~~~P-~demT~ed~~ea~ 142 (172)
T KOG3366|consen 101 KEIKEYESLSKKRIQELEKELEKVKSARP-FDEMTMEDLNEAF 142 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccHHHHHHhC
Confidence 33346677899999999999988765544 8899999998885
No 194
>PRK00889 adenylylsulfate kinase; Provisional
Probab=20.90 E-value=3.4e+02 Score=20.48 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=26.0
Q ss_pred HhCCCeEEEEec---HHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHH
Q psy9156 74 INSGKTCVLDIE---VQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRL 119 (177)
Q Consensus 74 ~~~gk~~il~id---~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL 119 (177)
...|.+|+++.- .+..+.++... ....+|||..| .+++.+|.
T Consensus 73 ~~~g~~vi~~~~~~~~~~~~~l~~~~---~~~~~v~l~~~-~e~~~~R~ 117 (175)
T PRK00889 73 TRHGVIVLVSAISPYRETREEVRANI---GNFLEVFVDAP-LEVCEQRD 117 (175)
T ss_pred HhCCCEEEEecCCCCHHHHHHHHhhc---CCeEEEEEcCC-HHHHHHhC
Confidence 356877766532 12234444444 45678999987 58888884
No 195
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=20.88 E-value=4.4e+02 Score=21.04 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=52.4
Q ss_pred cceE-eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCC
Q psy9156 33 KAYH-FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPS 111 (177)
Q Consensus 33 ~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps 111 (177)
+.+. +++.++......+-.++-..... .-+|++ +-+++..|++||. .+..|...+... -..++.+++
T Consensus 264 v~~~g~~~~~~~~~~~~~adv~v~ps~~-e~~~~~---~~Eama~G~PvI~-~~~~~~~~~~~~-------~~~~~~~~~ 331 (375)
T cd03821 264 VTFTGMLYGEDKAAALADADLFVLPSHS-ENFGIV---VAEALACGTPVVT-TDKVPWQELIEY-------GCGWVVDDD 331 (375)
T ss_pred EEEcCCCChHHHHHHHhhCCEEEecccc-CCCCcH---HHHHHhcCCCEEE-cCCCCHHHHhhc-------CceEEeCCC
Confidence 3343 67888888888877776654443 233443 5667889988766 444455444322 223444556
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9156 112 IEELETRLRGRGTETEDSLRRRLDLARR 139 (177)
Q Consensus 112 ~~~L~~RL~~Rg~es~e~I~~RL~~a~~ 139 (177)
.+.+.+.+..-- .+++..++.-++|.+
T Consensus 332 ~~~~~~~i~~l~-~~~~~~~~~~~~~~~ 358 (375)
T cd03821 332 VDALAAALRRAL-ELPQRLKAMGENGRA 358 (375)
T ss_pred hHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence 577776655433 233444444333433
No 196
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=20.87 E-value=1.9e+02 Score=27.19 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=49.6
Q ss_pred EEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchh
Q psy9156 80 CVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 80 ~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~ 159 (177)
+|=.||+-|.-.||... +++.-+.|...|.+.+.+.+.|...|.-+ . +.|...|.+-..+....+... ..|
T Consensus 121 ~iEnIDIGGpsmlRaAA-KN~~~V~Vv~dp~dY~~v~~~l~~~g~~s-~--~~R~~lA~kAF~~ta~YD~~I-----~~y 191 (513)
T PRK00881 121 AIENIDIGGPTMVRAAA-KNHKDVAVVVDPADYDAVLEELKANGSTT-L--ETRFRLAAKAFAHTAAYDAAI-----ANY 191 (513)
T ss_pred HHhcccCCcHHHHHHHH-hCCCCEEEECCHHHHHHHHHHHHhcCCCC-H--HHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 34457887777777654 34677889999999999999998766544 3 345555666666666666655 566
Q ss_pred hhh
Q psy9156 160 VEA 162 (177)
Q Consensus 160 ~~~ 162 (177)
|..
T Consensus 192 l~~ 194 (513)
T PRK00881 192 LTE 194 (513)
T ss_pred HHH
Confidence 643
No 197
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=20.86 E-value=1.3e+02 Score=23.09 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=35.2
Q ss_pred EcCCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHH-Hh-hhcchhhhhhcccccchh
Q psy9156 107 VKPPSIEELETRLRGRG-------TETEDSLRRRLDLARR-DM-SYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 107 I~pps~~~L~~RL~~Rg-------~es~e~I~~RL~~a~~-e~-~~~~~~~~~~~~~~~~~~ 159 (177)
-..|+++++-+++..+. ......+++|+.+|-. -| ..|+.|...|.|.....|
T Consensus 37 ~~~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQRIRRai~~al~nlAsLGl~Dy~N~~Fe~Y 98 (134)
T PF08664_consen 37 QNFPSLKEIFEELAQKKLASDEEIEKEKKAIEQRIRRAIKQALTNLASLGLEDYSNPIFEEY 98 (134)
T ss_pred cCCCcHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCChHHHHH
Confidence 45678888888776554 2234568889988843 23 566777888877755555
No 198
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=20.72 E-value=3.7e+02 Score=20.94 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHhCCCeEEEEe---cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHH
Q psy9156 73 VINSGKTCVLDI---EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETR 118 (177)
Q Consensus 73 ~~~~gk~~il~i---d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~R 118 (177)
..++|.+||+.. -.+.-...|+..+. ...+-|||..| ++++++|
T Consensus 70 l~~~G~ivIva~isp~~~~R~~~R~~~~~-~~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 70 LADQGIIVIVAFISPYREDREWARELIPN-ERFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp HHHTTSEEEEE----SHHHHHHHHHHHHT-TEEEEEEEES--HHHHHHH
T ss_pred HHhCCCeEEEeeccCchHHHHHHHHhCCc-CceEEEEeCCC-HHHHHHh
Confidence 346788877754 23344445555521 14688999985 7888887
No 199
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=20.64 E-value=2.5e+02 Score=21.76 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=28.8
Q ss_pred CHHHHHHHHHcCCeEEEEEeCCcee---eecHHHHHHHHhCCCeEEEEec
Q psy9156 39 TRADMEERIAAGEFLEHAEFAANLY---GTSRAAVEAVINSGKTCVLDIE 85 (177)
Q Consensus 39 s~~eF~~~i~~g~FlE~~~~~G~~Y---Gt~~~~i~~~~~~gk~~il~id 85 (177)
+.+.++.+.+.|-+++.......+. +.....+...++.|..+++--|
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lgTD 234 (275)
T cd01292 185 DPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTD 234 (275)
T ss_pred CHHHHHHHHHcCCeEEECCcccccccCCcCCcccHHHHHHCCCcEEEecC
Confidence 5667777777777777655444433 5555666666666655555444
No 200
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=20.62 E-value=1.6e+02 Score=23.06 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCeEEEEecH---HHHHHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhc
Q psy9156 68 AAVEAVINSGKTCVLDIEV---QGVQQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~---~G~~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~R 122 (177)
..++.++++|.+++++-.. +-..++.+.+.+ .+...+++|..|. +.-..|...|
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~-e~s~~rv~~R 141 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP-ELSIERVRQR 141 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH-HHHHHHHHHH
Confidence 4577788999999998643 344423322221 2778888888764 6666666665
No 201
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=20.52 E-value=2.1e+02 Score=23.21 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=39.4
Q ss_pred eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHh-CCCeEEEEecHHHHHHH
Q psy9156 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVIN-SGKTCVLDIEVQGVQQV 92 (177)
Q Consensus 14 f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~-~gk~~il~id~~G~~~l 92 (177)
+..+-..+|||. .| .-++.+-.++... +++-+.+-..+=|+---.++.+.. ..+.++++.|..++..|
T Consensus 14 L~~p~~~~~RPT----~d------rVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l 82 (187)
T COG0742 14 LKTPDGPGTRPT----TD------RVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL 82 (187)
T ss_pred ccCCCCCCcCCC----ch------HHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH
Confidence 444555678876 11 2344555555433 444444444455555555555443 34567777888888777
Q ss_pred HHH
Q psy9156 93 KRA 95 (177)
Q Consensus 93 k~~ 95 (177)
++.
T Consensus 83 ~~N 85 (187)
T COG0742 83 KEN 85 (187)
T ss_pred HHH
Confidence 754
No 202
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.52 E-value=17 Score=24.44 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCc-eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAG-AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~-~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
+.|...+++|+.+ .+|..|+..+-..+ .+ ++..++.--+.+.++++|.-.+. .+.+...+.++
T Consensus 8 ~~i~~~l~~~~~V--~lDF~gv~~~~ssF---l~eafg~l~~~~~~~~~~~~l~~~~~--~~~~~~~I~~v 71 (74)
T PF14213_consen 8 DEIEPALKEGEKV--VLDFEGVESITSSF---LNEAFGQLVREFGEEEIKKRLKFKNA--NESIKEMIKRV 71 (74)
T ss_pred HHHHHHHhcCCeE--EEECCCcccccHHH---HHHHHHHHHHHcCHHHHhheeEEecC--CHHHHHHHHHH
Confidence 4478888999884 56888887777666 32 33333333335677777665543 34455555443
No 203
>KOG4180|consensus
Probab=20.06 E-value=1.4e+02 Score=26.76 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=30.3
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhc----------ccccch---hhhhhcccCC
Q psy9156 111 SIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG----------KNSLRS---YVEASVSSGN 168 (177)
Q Consensus 111 s~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~ 168 (177)
|.+.|.+-|+.||++ +.+-|..-+.-..+.+.|+.+.. -.++.. +.+.|||.|-
T Consensus 48 spdql~q~L~srgtd----v~~ll~~hKvhkn~~~~~~~~l~k~giesklv~R~~lsq~i~waD~VisvGG 114 (395)
T KOG4180|consen 48 SPDQLLQYLESRGTD----VGRLLSKHKVHKNAIKFCQEELSKAGIESKLVSRNDLSQPIRWADMVISVGG 114 (395)
T ss_pred CHHHHHHHHHhcCch----HHHHHHHhHHHHHHHHHHHHHHhhCCcceeeeehhhccCcCchhhEEEEecC
Confidence 568999999999985 33334433333333333433332 223444 3566788763
No 204
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=20.02 E-value=5.6e+02 Score=21.91 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=47.5
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELE 116 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~ 116 (177)
+++.+++.+.........+..+ ..|.+. .+-+++..|++||. -|..|...+-... ...+++.|.|.+.|.
T Consensus 288 ~v~~~~~~~~l~~adv~v~~s~---~e~~~~-~llEAmA~G~PVIa-s~~~g~~e~i~~~-----~~G~lv~~~d~~~la 357 (396)
T cd03818 288 RVPYDQYLALLQVSDVHVYLTY---PFVLSW-SLLEAMACGCLVVG-SDTAPVREVITDG-----ENGLLVDFFDPDALA 357 (396)
T ss_pred CCCHHHHHHHHHhCcEEEEcCc---ccccch-HHHHHHHCCCCEEE-cCCCCchhhcccC-----CceEEcCCCCHHHHH
Confidence 4677888877777666554332 344443 46677889998776 4555665554332 124455666788888
Q ss_pred HHHhhc
Q psy9156 117 TRLRGR 122 (177)
Q Consensus 117 ~RL~~R 122 (177)
+.|..=
T Consensus 358 ~~i~~l 363 (396)
T cd03818 358 AAVIEL 363 (396)
T ss_pred HHHHHH
Confidence 776543
Done!