Query psy9156
Match_columns 177
No_of_seqs 162 out of 1143
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:22:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 1.9E-48 6.3E-53 311.9 17.4 155 2-158 17-173 (186)
2 3tvt_A Disks large 1 tumor sup 100.0 1.7E-42 5.9E-47 294.5 15.7 153 2-159 113-266 (292)
3 1kjw_A Postsynaptic density pr 100.0 2.3E-41 7.8E-46 287.5 16.5 153 2-160 118-272 (295)
4 2xkx_A Disks large homolog 4; 100.0 2.8E-37 9.7E-42 288.5 16.2 154 2-161 544-699 (721)
5 3ney_A 55 kDa erythrocyte memb 100.0 3.9E-34 1.3E-38 230.9 12.8 146 2-160 35-180 (197)
6 3tau_A Guanylate kinase, GMP k 100.0 2.9E-32 9.8E-37 218.3 13.3 156 2-160 24-179 (208)
7 3a00_A Guanylate kinase, GMP k 100.0 5.5E-32 1.9E-36 212.7 12.8 155 2-159 17-174 (186)
8 2qor_A Guanylate kinase; phosp 100.0 2.4E-29 8.1E-34 200.0 19.2 154 2-158 28-185 (204)
9 1s96_A Guanylate kinase, GMP k 100.0 3.5E-28 1.2E-32 197.9 19.3 154 2-158 32-186 (219)
10 1kgd_A CASK, peripheral plasma 100.0 2.4E-28 8.3E-33 191.2 10.2 147 2-160 21-169 (180)
11 1lvg_A Guanylate kinase, GMP k 99.9 1.8E-25 6.1E-30 177.9 16.8 154 2-158 20-176 (198)
12 3tsz_A Tight junction protein 99.9 1E-25 3.4E-30 197.9 10.9 122 2-157 245-367 (391)
13 3shw_A Tight junction protein 99.9 4.4E-25 1.5E-29 197.9 10.1 122 2-157 237-359 (468)
14 3tr0_A Guanylate kinase, GMP k 99.9 1.4E-21 4.7E-26 153.3 17.4 154 2-159 23-176 (205)
15 3lnc_A Guanylate kinase, GMP k 99.9 6.9E-22 2.4E-26 159.4 13.6 154 2-158 43-197 (231)
16 3kfv_A Tight junction protein 99.8 6.6E-21 2.3E-25 162.8 9.4 121 2-160 158-280 (308)
17 4dey_A Voltage-dependent L-typ 99.8 2.8E-21 9.5E-26 166.7 -1.6 141 2-158 165-309 (337)
18 1z6g_A Guanylate kinase; struc 99.8 1.2E-17 4E-22 134.6 18.1 154 2-156 39-194 (218)
19 2j41_A Guanylate kinase; GMP, 99.8 2.5E-18 8.5E-23 134.6 13.5 143 2-148 22-165 (207)
20 1znw_A Guanylate kinase, GMP k 99.4 1.1E-11 3.6E-16 98.2 18.3 138 2-143 36-175 (207)
21 1gvn_B Zeta; postsegregational 98.6 2.5E-09 8.6E-14 89.4 -1.2 137 2-155 49-206 (287)
22 3a8t_A Adenylate isopentenyltr 98.4 1.5E-08 5E-13 87.5 -2.4 109 2-123 56-195 (339)
23 3eph_A TRNA isopentenyltransfe 97.8 5.4E-07 1.8E-11 79.5 -5.1 73 2-84 18-98 (409)
24 3exa_A TRNA delta(2)-isopenten 97.6 6.8E-07 2.3E-11 76.6 -6.8 73 2-84 19-99 (322)
25 3tlx_A Adenylate kinase 2; str 97.4 8.6E-05 2.9E-09 59.9 3.1 122 2-142 45-209 (243)
26 3foz_A TRNA delta(2)-isopenten 97.3 3.7E-06 1.3E-10 71.9 -6.4 73 2-84 26-106 (316)
27 3dl0_A Adenylate kinase; phosp 97.1 0.0006 2.1E-08 53.1 5.4 124 2-142 16-180 (216)
28 2ze6_A Isopentenyl transferase 97.1 5.8E-05 2E-09 61.4 -0.9 94 19-124 42-140 (253)
29 3crm_A TRNA delta(2)-isopenten 96.7 4.5E-05 1.5E-09 65.2 -4.5 39 2-40 21-67 (323)
30 3fb4_A Adenylate kinase; psych 96.7 0.0054 1.8E-07 47.5 7.4 124 2-142 16-180 (216)
31 1zak_A Adenylate kinase; ATP:A 96.6 2.2E-05 7.7E-10 61.8 -6.6 140 2-142 21-178 (222)
32 1ly1_A Polynucleotide kinase; 96.1 0.018 6E-07 42.7 7.3 76 63-141 61-147 (181)
33 4eaq_A DTMP kinase, thymidylat 96.0 0.0019 6.6E-08 51.7 1.4 128 2-142 42-195 (229)
34 3lw7_A Adenylate kinase relate 95.9 0.083 2.8E-06 38.3 9.8 66 68-136 67-140 (179)
35 3v9p_A DTMP kinase, thymidylat 95.6 0.0014 4.8E-08 53.0 -0.9 112 20-141 61-196 (227)
36 1qhx_A CPT, protein (chloramph 95.6 0.049 1.7E-06 40.5 7.8 63 62-126 71-137 (178)
37 3zvl_A Bifunctional polynucleo 95.6 0.0055 1.9E-07 53.3 2.7 77 62-141 294-382 (416)
38 3d3q_A TRNA delta(2)-isopenten 95.2 0.0013 4.4E-08 56.5 -2.5 120 2-140 23-156 (340)
39 2bwj_A Adenylate kinase 5; pho 94.9 0.17 5.6E-06 38.0 8.9 70 69-141 83-161 (199)
40 2c95_A Adenylate kinase 1; tra 94.8 0.11 3.9E-06 38.9 7.8 93 42-141 57-158 (196)
41 1ukz_A Uridylate kinase; trans 93.7 0.35 1.2E-05 36.6 8.5 92 41-139 63-164 (203)
42 3lv8_A DTMP kinase, thymidylat 93.1 0.031 1.1E-06 45.2 1.6 117 16-142 56-200 (236)
43 3t61_A Gluconokinase; PSI-biol 93.1 0.33 1.1E-05 36.9 7.4 54 68-124 77-133 (202)
44 1ltq_A Polynucleotide kinase; 93.1 0.38 1.3E-05 38.8 8.1 71 68-141 66-147 (301)
45 2z0h_A DTMP kinase, thymidylat 93.0 0.086 2.9E-06 39.6 3.9 100 41-142 44-162 (197)
46 2plr_A DTMP kinase, probable t 92.0 0.79 2.7E-05 34.4 8.3 52 69-123 78-144 (213)
47 2rhm_A Putative kinase; P-loop 91.7 0.22 7.6E-06 37.1 4.8 59 63-124 63-127 (193)
48 2cdn_A Adenylate kinase; phosp 91.5 0.36 1.2E-05 36.6 5.9 38 103-141 129-168 (201)
49 4edh_A DTMP kinase, thymidylat 90.9 0.086 2.9E-06 41.7 1.8 127 3-141 23-176 (213)
50 1knq_A Gluconate kinase; ALFA/ 90.9 1.1 3.7E-05 32.9 7.9 49 72-124 75-126 (175)
51 3umf_A Adenylate kinase; rossm 90.7 0.82 2.8E-05 36.3 7.4 64 75-141 106-178 (217)
52 1nn5_A Similar to deoxythymidy 90.2 0.61 2.1E-05 35.2 6.1 71 68-141 84-170 (215)
53 2vli_A Antibiotic resistance p 89.5 1.9 6.4E-05 31.6 8.2 52 68-123 67-126 (183)
54 1kht_A Adenylate kinase; phosp 89.2 0.47 1.6E-05 35.1 4.6 35 100-136 115-154 (192)
55 2pbr_A DTMP kinase, thymidylat 89.1 2.2 7.5E-05 31.4 8.3 39 102-141 124-162 (195)
56 2xb4_A Adenylate kinase; ATP-b 88.6 0.42 1.4E-05 37.2 4.1 73 41-123 47-127 (223)
57 3sr0_A Adenylate kinase; phosp 87.7 0.72 2.5E-05 36.1 5.0 70 70-141 68-169 (206)
58 3kb2_A SPBC2 prophage-derived 87.0 3.2 0.00011 29.8 7.9 39 102-141 96-135 (173)
59 3gmt_A Adenylate kinase; ssgci 86.9 3 0.0001 33.5 8.3 39 102-141 112-183 (230)
60 1nks_A Adenylate kinase; therm 86.3 2.5 8.5E-05 31.0 7.1 67 70-140 76-162 (194)
61 1qf9_A UMP/CMP kinase, protein 85.8 5.3 0.00018 29.1 8.7 63 76-139 82-154 (194)
62 4eun_A Thermoresistant glucoki 85.4 1.7 5.8E-05 32.9 5.9 52 71-124 95-147 (200)
63 3be4_A Adenylate kinase; malar 84.4 4.8 0.00016 30.8 8.2 20 103-123 114-133 (217)
64 3trf_A Shikimate kinase, SK; a 83.7 0.56 1.9E-05 34.8 2.4 77 35-119 31-115 (185)
65 2v54_A DTMP kinase, thymidylat 82.6 3.2 0.00011 30.9 6.3 68 68-141 77-160 (204)
66 1e4v_A Adenylate kinase; trans 82.3 7.7 0.00026 29.4 8.5 39 103-141 133-175 (214)
67 3iij_A Coilin-interacting nucl 79.1 2.7 9.1E-05 30.9 4.7 80 35-124 37-119 (180)
68 1aky_A Adenylate kinase; ATP:A 78.4 9.3 0.00032 29.0 7.8 19 103-122 114-132 (220)
69 2f6r_A COA synthase, bifunctio 78.0 1.8 6.1E-05 35.1 3.7 35 102-137 201-235 (281)
70 1vht_A Dephospho-COA kinase; s 77.4 1.9 6.5E-05 32.9 3.5 33 103-136 128-160 (218)
71 1jjv_A Dephospho-COA kinase; P 77.3 2.2 7.5E-05 32.2 3.8 34 102-136 125-158 (206)
72 4i1u_A Dephospho-COA kinase; s 76.7 1.1 3.6E-05 35.6 1.9 33 103-136 134-166 (210)
73 1tev_A UMP-CMP kinase; ploop, 75.1 21 0.00071 25.8 9.6 64 76-140 85-158 (196)
74 3cm0_A Adenylate kinase; ATP-b 75.0 3.2 0.00011 30.4 4.2 37 103-140 108-150 (186)
75 1rz3_A Hypothetical protein rb 70.8 1.5 5.3E-05 33.3 1.5 94 31-136 75-174 (201)
76 3a4m_A L-seryl-tRNA(SEC) kinas 70.2 15 0.00052 28.9 7.4 63 67-133 63-132 (260)
77 1uf9_A TT1252 protein; P-loop, 69.8 3.8 0.00013 30.4 3.5 34 102-136 126-159 (203)
78 2wwf_A Thymidilate kinase, put 69.4 7.3 0.00025 29.0 5.1 72 69-141 86-171 (212)
79 1zd8_A GTP:AMP phosphotransfer 68.9 14 0.00048 28.1 6.7 23 119-141 158-180 (227)
80 3fdi_A Uncharacterized protein 68.7 12 0.0004 28.7 6.2 55 76-136 97-151 (201)
81 4tmk_A Protein (thymidylate ki 68.2 18 0.00062 28.1 7.3 72 69-141 85-177 (213)
82 4hlc_A DTMP kinase, thymidylat 68.0 31 0.0011 26.4 8.6 56 68-124 76-147 (205)
83 3ake_A Cytidylate kinase; CMP 67.5 6.8 0.00023 29.1 4.5 34 102-136 137-170 (208)
84 2if2_A Dephospho-COA kinase; a 66.0 5.7 0.0002 29.6 3.8 34 102-137 125-158 (204)
85 3hdt_A Putative kinase; struct 65.4 18 0.0006 28.4 6.7 61 70-136 109-171 (223)
86 3vaa_A Shikimate kinase, SK; s 64.9 38 0.0013 25.1 8.4 35 102-137 119-160 (199)
87 2ga8_A Hypothetical 39.9 kDa p 59.4 23 0.0008 30.2 6.8 58 77-135 260-327 (359)
88 1gtv_A TMK, thymidylate kinase 58.4 3.7 0.00013 30.8 1.5 80 61-142 73-183 (214)
89 1y63_A LMAJ004144AAA protein; 58.3 13 0.00043 27.5 4.5 31 102-134 102-132 (184)
90 2gks_A Bifunctional SAT/APS ki 58.1 4.6 0.00016 36.2 2.2 86 31-120 399-488 (546)
91 3hjn_A DTMP kinase, thymidylat 56.7 52 0.0018 24.8 7.9 73 68-141 73-161 (197)
92 2axn_A 6-phosphofructo-2-kinas 56.3 62 0.0021 28.5 9.3 47 75-123 117-169 (520)
93 2vp4_A Deoxynucleoside kinase; 55.3 9.5 0.00033 29.4 3.4 38 103-141 149-190 (230)
94 2p5t_B PEZT; postsegregational 55.2 16 0.00056 28.5 4.9 50 69-122 101-157 (253)
95 1wou_A Thioredoxin -related pr 53.8 15 0.00053 25.0 4.0 75 35-109 7-101 (123)
96 2jaq_A Deoxyguanosine kinase; 53.7 12 0.0004 27.5 3.6 36 103-139 127-166 (205)
97 1ak2_A Adenylate kinase isoenz 53.0 23 0.0008 27.1 5.4 20 102-122 124-143 (233)
98 1q3t_A Cytidylate kinase; nucl 51.9 18 0.00063 27.7 4.6 34 102-136 154-192 (236)
99 1np6_A Molybdopterin-guanine d 45.2 0.49 1.7E-05 36.2 -5.5 71 2-76 22-95 (174)
100 2h92_A Cytidylate kinase; ross 43.8 30 0.001 25.8 4.6 33 102-135 137-174 (219)
101 1uj2_A Uridine-cytidine kinase 43.6 19 0.00066 28.0 3.5 54 77-136 131-189 (252)
102 2ocp_A DGK, deoxyguanosine kin 42.2 29 0.00099 26.6 4.4 39 102-141 151-193 (241)
103 1a7j_A Phosphoribulokinase; tr 41.8 24 0.00083 28.5 4.0 113 18-136 49-187 (290)
104 2bdt_A BH3686; alpha-beta prot 37.5 86 0.0029 22.6 6.2 53 72-125 68-125 (189)
105 2pt5_A Shikimate kinase, SK; a 36.9 51 0.0018 23.2 4.8 21 102-123 94-114 (168)
106 2f9f_A First mannosyl transfer 35.2 78 0.0027 22.6 5.6 79 32-121 79-158 (177)
107 1e6c_A Shikimate kinase; phosp 33.8 1.2E+02 0.0041 21.2 9.2 34 103-137 96-135 (173)
108 4f6r_C Stathmin-like domain R1 33.6 45 0.0015 22.8 3.6 40 100-139 14-56 (87)
109 1zuh_A Shikimate kinase; alpha 32.5 47 0.0016 23.6 3.9 20 102-122 98-117 (168)
110 2juj_A E3 ubiquitin-protein li 32.4 22 0.00075 22.4 1.7 38 113-151 8-45 (56)
111 1sq5_A Pantothenate kinase; P- 31.9 44 0.0015 27.0 4.0 32 103-136 217-268 (308)
112 1abz_A Alpha-T-alpha, ATA; de 31.3 53 0.0018 18.6 3.0 25 117-141 13-37 (40)
113 2bfw_A GLGA glycogen synthase; 31.1 1.4E+02 0.0049 21.2 7.6 91 37-138 103-193 (200)
114 3kto_A Response regulator rece 29.2 1.3E+02 0.0043 20.0 6.2 65 73-140 45-126 (136)
115 2xvc_A ESCRT-III, SSO0910; cel 28.8 9.3 0.00032 24.4 -0.5 40 34-74 6-46 (59)
116 3c8u_A Fructokinase; YP_612366 28.1 63 0.0022 24.0 4.1 33 102-136 149-185 (208)
117 1p5z_B DCK, deoxycytidine kina 27.8 58 0.002 25.3 3.9 36 103-139 177-216 (263)
118 2gek_A Phosphatidylinositol ma 27.0 1.4E+02 0.0048 23.7 6.3 96 33-138 265-361 (406)
119 3qhp_A Type 1 capsular polysac 24.8 95 0.0033 21.4 4.4 77 35-122 60-137 (166)
120 1z4h_A TORI, TOR inhibition pr 23.8 33 0.0011 21.3 1.5 41 35-76 19-59 (66)
121 3oy2_A Glycosyltransferase B73 23.5 1.7E+02 0.0057 23.5 6.2 94 37-140 261-369 (413)
122 1wfx_A Probable RNA 2'-phospho 23.4 96 0.0033 23.8 4.4 47 61-109 94-146 (186)
123 2oe3_A Thioredoxin-3; electron 22.9 1.5E+02 0.0053 19.4 5.0 70 37-107 17-90 (114)
124 1m7g_A Adenylylsulfate kinase; 21.3 1.2E+02 0.004 22.5 4.4 48 71-119 92-149 (211)
125 4e22_A Cytidylate kinase; P-lo 20.4 1.1E+02 0.0038 23.6 4.3 32 102-134 164-200 (252)
126 3ld9_A DTMP kinase, thymidylat 20.3 3E+02 0.01 21.2 7.3 71 68-141 98-186 (223)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=1.9e-48 Score=311.92 Aligned_cols=155 Identities=45% Similarity=0.806 Sum_probs=144.6
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++++|+.|.+++||||||||+||++|+||||||+++|++|+++|+|+|||+++||+|||++++|+.++++|++||
T Consensus 17 l~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~~~l~~g~~vi 96 (186)
T 1ex7_A 17 LLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI 96 (186)
T ss_dssp HHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceeeehhhCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchh--hhhhcccccch
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDS--LRSYGKNSLRS 158 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~--~~~~~~~~~~~ 158 (177)
+++|++|++++++.++ .++++|||.|||.++|++||.+||++++++|++||++|+.||+++..+ +....|+++..
T Consensus 97 l~id~~g~~~~k~~~~--~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNddle~ 173 (186)
T 1ex7_A 97 LDIDMQGVKSVKAIPE--LNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDK 173 (186)
T ss_dssp EECCHHHHHHHHTCGG--GCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECSSHHH
T ss_pred ecCCHHHHHHHHHhcc--cCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCcEEEECcCHHH
Confidence 9999999999998764 589999999999999999999999999999999999999999887654 44446766544
No 2
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=1.7e-42 Score=294.48 Aligned_cols=153 Identities=33% Similarity=0.520 Sum_probs=139.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEee-CHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fv-s~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|+++|++++|+.|.++||||||+||+||+||+||||| |+++|++++++|+|+||++++||+|||++++|++++++|++|
T Consensus 113 l~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~v 192 (292)
T 3tvt_A 113 INDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHC 192 (292)
T ss_dssp HHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEE
T ss_pred HHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcE
Confidence 6889999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchh
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~ 159 (177)
|++||++|+++|+... +.|++|||.|||+++|++|+++|++++.+++..|+.++ |+++++..+....|+++..-
T Consensus 193 iLdid~qg~~~lk~~~---~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~--e~e~~~~fD~vIvNddle~a 266 (292)
T 3tvt_A 193 ILDVSGNAIKRLQVAQ---LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKM--EQEFGEYFTGVVQGDTIEEI 266 (292)
T ss_dssp EECCCTHHHHHHHHTT---CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHH--HHHHTTTCSEEECCSSHHHH
T ss_pred EEeccchhhhhccccc---ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHH--HHhhhhhCCEEEECcCHHHH
Confidence 9999999999999988 89999999999999999999999988777788877555 45555666666677755443
No 3
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=100.00 E-value=2.3e-41 Score=287.55 Aligned_cols=153 Identities=32% Similarity=0.569 Sum_probs=140.6
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEee-CHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fv-s~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|+++|++.+|+.|.+++|||||+||+||+||+||||| |+++|++++++|+|+||++++||+|||++++|++++++|++|
T Consensus 118 l~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~v 197 (295)
T 1kjw_A 118 ANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHC 197 (295)
T ss_dssp HHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE
T ss_pred HHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeE
Confidence 6789999999889999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHhhhcchhhhhhcccccchh
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR-RDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~-~e~~~~~~~~~~~~~~~~~~~ 159 (177)
|+++|++|+++++... ..|++|||.|||.++|++ |++||+ +++|++||++|. .|+++.+.++..+.|+++..-
T Consensus 198 ildid~~g~~~l~~~~---~~pi~IfI~pps~~~L~~-L~~R~t--~~~i~~rl~~a~~~e~~~~~~fd~vivNd~le~a 271 (295)
T 1kjw_A 198 ILDVSANAVRRLQAAH---LHPIAIFIRPRSLENVLE-INKRIT--EEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 271 (295)
T ss_dssp EECCCTTHHHHHHHTT---CCCEEEEECCSSHHHHHH-HCTTSC--HHHHHHHHHHHHHHHHHHGGGCSEEECCSSHHHH
T ss_pred EEEeCHHHHHHHHhcc---cCCeEEEEECCCHHHHHH-HHhcCC--HHHHHHHHHHHHHHHHhccccCeEEEECcCHHHH
Confidence 9999999999999876 678999999999999998 999985 578999999994 588888877777777766554
Q ss_pred h
Q psy9156 160 V 160 (177)
Q Consensus 160 ~ 160 (177)
+
T Consensus 272 ~ 272 (295)
T 1kjw_A 272 Y 272 (295)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=100.00 E-value=2.8e-37 Score=288.48 Aligned_cols=154 Identities=32% Similarity=0.566 Sum_probs=141.0
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEee-CHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fv-s~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|+++|++.+|+.|.+++|||||+||+||++|+||||| |+++|++++++|+|+|||+++||+|||++++|++++++|++|
T Consensus 544 l~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ 623 (721)
T 2xkx_A 544 ANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHC 623 (721)
T ss_pred HHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcE
Confidence 6789999999889999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHhhhcchhhhhhcccccchh
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR-RDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~-~e~~~~~~~~~~~~~~~~~~~ 159 (177)
|+++|++|+++++... ..|++|||.|||.++|++ |++|++ +++|++||++|. .|+++.+..+....|+++..-
T Consensus 624 ildi~~~~~~~l~~~~---~~p~~ifi~pps~~~L~~-l~~R~t--~~~~~~rl~~a~~~e~~~~~~fd~vi~Nd~l~~a 697 (721)
T 2xkx_A 624 ILDVSANAVRRLQAAH---LHPIAIFIRPRSLENVLE-INKRIT--EEQARKAFDRATKLEQEFTECFSAIVEGDSFEEI 697 (721)
T ss_pred EEeCCHHHHHHHHhcc---cCCEEEEEeCCcHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhccccCcEEEECcCHHHH
Confidence 9999999999999776 678999999999999998 999986 478999999994 588888877777777766554
Q ss_pred hh
Q psy9156 160 VE 161 (177)
Q Consensus 160 ~~ 161 (177)
++
T Consensus 698 ~~ 699 (721)
T 2xkx_A 698 YH 699 (721)
T ss_pred HH
Confidence 33
No 5
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.9e-34 Score=230.86 Aligned_cols=146 Identities=31% Similarity=0.505 Sum_probs=129.0
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|++.+|+.|.+++++|||+||+||.+|++|+|+|.++|.+++++|.|+||++++||+|||++++|++++++|++||
T Consensus 35 L~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YGt~~~~v~~~l~~G~~vi 114 (197)
T 3ney_A 35 IKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAI 114 (197)
T ss_dssp HHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecccchhhHHHHHhcCCeEE
Confidence 67889999997899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYV 160 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~ 160 (177)
+++|++|++++++.+ +.|++|||.|||. .|++++.+.|.+|++.++ .++++..+....|+++..=+
T Consensus 115 ldid~qg~~~~~~~~---~~~~~Ifi~Pps~--------~~~~e~~~~i~~r~~~~~--~~~~~~fd~vivNd~l~~a~ 180 (197)
T 3ney_A 115 LDIEPQTLKIVRTAE---LSPFIVFIAPTDQ--------GTQTEALQQLQKDSEAIR--SQYAHYFDLSLVNNGVDETL 180 (197)
T ss_dssp EECCGGGHHHHCSTT---TCEEEEEEEECCB--------SSCCHHHHHHHHHHHHHH--HHHGGGCSEEEEESCHHHHH
T ss_pred EEECHHHHHHHHhcC---CCceEEEEeCCCc--------cccchHHHHHHHHHHHHH--HhhccCCCEEEECCCHHHHH
Confidence 999999999999888 7899999999995 467777788999986553 34555666666777665443
No 6
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.98 E-value=2.9e-32 Score=218.29 Aligned_cols=156 Identities=35% Similarity=0.573 Sum_probs=138.7
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+|..+.+++++|||+||++|.+|++|+|++.++|.+++.+|.|+||++++|++||++.+.+++++++|++||
T Consensus 24 l~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~~~~~i~~~l~~g~~vi 103 (208)
T 3tau_A 24 VREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIF 103 (208)
T ss_dssp HHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCCEE
T ss_pred HHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCCcHHHHHHHHHcCCeEE
Confidence 67888888886689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchhh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYV 160 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~~ 160 (177)
+++|++|+.++++.+ +.+++||+.|||.++|++||.+||++++++|++||+++..|+++...++....|+++..-+
T Consensus 104 ld~~~~g~~~~~~~~---~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~~d~vivN~~~~~~~ 179 (208)
T 3tau_A 104 LEIEVQGAMQVRKAM---PEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAV 179 (208)
T ss_dssp EECCHHHHHHHHHHC---TTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGGSSEEEECSSHHHHH
T ss_pred EEeeHHHHHHHHHhC---CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccCCEEEECcCHHHHH
Confidence 999999999999999 7899999999999999999999999999999999999999998888887777777655543
No 7
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.97 E-value=5.5e-32 Score=212.72 Aligned_cols=155 Identities=45% Similarity=0.800 Sum_probs=112.7
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|+...|..+.+++++|||+|++||++|.+|+|++.+.|..++.++.|+||++++|++||++++.+++++++|++|+
T Consensus 17 l~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~~~~i~~~l~~g~~~i 96 (186)
T 3a00_A 17 LLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI 96 (186)
T ss_dssp HHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCcHHHHHHHHHcCCeEE
Confidence 67888888887899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHH-HcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhc--chhhhhhcccccch
Q psy9156 82 LDIEVQGVQQVKR-AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYG--KDSLRSYGKNSLRS 158 (177)
Q Consensus 82 l~id~~G~~~lk~-~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~--~~~~~~~~~~~~~~ 158 (177)
+++|++|++++++ .. +.+++|||.|||.+.|++||.+||++++++|++||+++..|+++. ..++..+.|+++..
T Consensus 97 l~~~~~g~~~l~~~~~---~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd~~~~ 173 (186)
T 3a00_A 97 LDIDMQGVKSVKAIPE---LNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDK 173 (186)
T ss_dssp EECCHHHHHHHHTCGG---GCCEEEEEECSCC---------------------------------CCCCSEEEECSSHHH
T ss_pred EEEcHHHHHHHHHhcC---CCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEECcCHHH
Confidence 9999999999998 76 789999999999999999999999999999999999999999877 66666666666544
Q ss_pred h
Q psy9156 159 Y 159 (177)
Q Consensus 159 ~ 159 (177)
-
T Consensus 174 a 174 (186)
T 3a00_A 174 A 174 (186)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.97 E-value=2.4e-29 Score=200.02 Aligned_cols=154 Identities=33% Similarity=0.628 Sum_probs=136.5
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|.+.+|..+.+++++|||+||++|.+|.+|+|++.++|.+++.+|.|+++++++|++||++++.++.++++|++||
T Consensus 28 l~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi 107 (204)
T 2qor_A 28 LIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICL 107 (204)
T ss_dssp HHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecCCHHHHHHHHHcCCeEE
Confidence 67888888875588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCC--ceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhh--hcchhhhhhcccccc
Q psy9156 82 LDIEVQGVQQVKRAGGAMA--GAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS--YGKDSLRSYGKNSLR 157 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~--~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~--~~~~~~~~~~~~~~~ 157 (177)
++++++|++++++.+ + .+++|||.|+|.++|.+||.+|+++++++|++||.++..++. +...++..+.|.++.
T Consensus 108 ~d~~~~~~~~l~~~~---~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~n~~~e 184 (204)
T 2qor_A 108 FEMNINGVKQLKESK---HIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLA 184 (204)
T ss_dssp EECCHHHHHHHHHCS---SCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECSSHH
T ss_pred EEECHHHHHHHHHhc---CCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhccCcEEEECcCHH
Confidence 999999999998877 5 679999998899999999999998899999999999988886 444444444444433
Q ss_pred h
Q psy9156 158 S 158 (177)
Q Consensus 158 ~ 158 (177)
.
T Consensus 185 ~ 185 (204)
T 2qor_A 185 R 185 (204)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.96 E-value=3.5e-28 Score=197.90 Aligned_cols=154 Identities=40% Similarity=0.604 Sum_probs=142.1
Q ss_pred HHHHHhhhCCC-ceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFFQDYPD-RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll~~~p~-~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|++.|....|. .+...+++|||+||++|.+|++|+|++.+.|..+..+|+|+||++++|++||++++.+.++++.|++|
T Consensus 32 Llk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~~~~v~~~l~~G~il 111 (219)
T 1s96_A 32 LIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDV 111 (219)
T ss_dssp HHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHTTTCEE
T ss_pred HHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCCHHHHHHHHhcCCeE
Confidence 67788887773 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccch
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRS 158 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~ 158 (177)
|+|+|++|..++++.+ ...++|||.|||.+.+++||..||++++++|.+|+.+|..|+++...++..+.|+++..
T Consensus 112 lLDLD~~~~~~i~~~l---~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~i~Nd~l~~ 186 (219)
T 1s96_A 112 FLDIDWQGAQQIRQKM---PHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDT 186 (219)
T ss_dssp EEECCHHHHHHHHHHC---TTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEEEECSSHHH
T ss_pred EEEECHHHHHHHHHHc---cCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEEEECcCHHH
Confidence 9999999999999998 57899999999999999999999999999999999999999988877777777776553
No 10
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.95 E-value=2.4e-28 Score=191.19 Aligned_cols=147 Identities=27% Similarity=0.464 Sum_probs=124.9
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+|..+..++++|||+||++|.+|.+|+|++.++|.+++.++.|++|++++||+||++.+.+++++++|++|+
T Consensus 21 L~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg~~~~~i~~~l~~g~~vi 100 (180)
T 1kgd_A 21 IKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAI 100 (180)
T ss_dssp HHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccccccHHHHHHHHHCCCeEE
Confidence 67888888876688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh--hhcchhhhhhcccccchh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM--SYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~--~~~~~~~~~~~~~~~~~~ 159 (177)
+++|++|++++++.+ +.+++|||.|||.++|++| +++| +||.++..++ .+.+.++....|+++..-
T Consensus 101 l~id~~g~~~~~~~~---~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~~~~~d~~i~n~~~~~~ 168 (180)
T 1kgd_A 101 LDVEPQALKVLRTAE---FAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTYAHYFDLTIINNEIDET 168 (180)
T ss_dssp EECCGGGHHHHSSTT---TCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHHGGGCSEEEECSSHHHH
T ss_pred EEECHHHHHHHHHhC---CCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhhhCCCcEEEECcCHHHH
Confidence 999999999998877 6789999999998877665 3667 7899988888 445555665566655444
Q ss_pred h
Q psy9156 160 V 160 (177)
Q Consensus 160 ~ 160 (177)
+
T Consensus 169 ~ 169 (180)
T 1kgd_A 169 I 169 (180)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.94 E-value=1.8e-25 Score=177.89 Aligned_cols=154 Identities=51% Similarity=0.786 Sum_probs=138.8
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+|..+.+.+++|||+|+.||.+|.+|+|++.++|.+++.++.|++++.+.||+||++.+++.++++.|+.++
T Consensus 20 Ll~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~~ 99 (198)
T 1lvg_A 20 LLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICV 99 (198)
T ss_dssp HHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCCCHHHHHHHHHcCCcEE
Confidence 67778787787899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhc---chhhhhhcccccch
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYG---KDSLRSYGKNSLRS 158 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~---~~~~~~~~~~~~~~ 158 (177)
++++++|+..++... ..|.++|+.||+...|.+|+..|+.+++++|++||..+..++..+ ..++..+.++++..
T Consensus 100 ~~~~~~g~~~~~~~~---~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~ 176 (198)
T 1lvg_A 100 LDVDLQGVRSIKKTD---LCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDK 176 (198)
T ss_dssp EECCHHHHHHHTTSS---CCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHH
T ss_pred EECCHHHHHHHHhcC---CCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHH
Confidence 999999999987654 689999999999999999999999999999999999999888776 45555555555443
No 12
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.93 E-value=1e-25 Score=197.89 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=105.5
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++++|+.|.. |||+||+||+||+||||| ++++|++++++|++||
T Consensus 245 l~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~Fv---------------------------~~~~V~~~~~~Gk~~i 293 (391)
T 3tsz_A 245 AREKLAREEPDIYQI----AKSEPRDAGTDQRSSGII---------------------------RLHTIKQIIDQDKHAL 293 (391)
T ss_dssp HHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CCC---------------------------CHHHHHHHHTTTCEEE
T ss_pred HHHHHHhhCcccccc----ccCCCCCcccCCccCCcC---------------------------cHHHHHHHHHcCCEEE
Confidence 789999999998753 799999999999999998 7999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH-HHHhhhcchhhhhhcccccc
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA-RRDMSYGKDSLRSYGKNSLR 157 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a-~~e~~~~~~~~~~~~~~~~~ 157 (177)
||||+||+++|+... +.|++|||.|||+++|++|...+++++++.+++|++.| +.|+++++..++...|+++.
T Consensus 294 LdId~qg~~~l~~~~---~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~ 367 (391)
T 3tsz_A 294 LDVTPNAVDRLNYAQ---WYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMN 367 (391)
T ss_dssp ECCCHHHHHHHHHTT---CCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHGGGCSEEEECCTTC
T ss_pred EEeCHHHHHHHHhCC---CCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccccCcEEEECCCcH
Confidence 999999999999988 88999999999999999874333457778899999988 45677888888888888885
No 13
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=197.88 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=97.4
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|+++|++++|+.|.. +||| ||+||+||+|||| |++++|++++++|++||
T Consensus 237 l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG~~Y~F---------------------------Ts~~~V~~vl~~Gk~~i 285 (468)
T 3shw_A 237 AREKLAREEPDIYQI---AKSE-PRDAGTDQRSSGI---------------------------IRLHTIKQIIDQDKHAL 285 (468)
T ss_dssp HHHHHHHHCTTTEEE---CCCB-C----------CB---------------------------CCHHHHHHHHTTTCEEE
T ss_pred HHHHHHHhCCCceee---ecCC-CCCcccccccCCc---------------------------ccHHHHHHHHHCCCeEE
Confidence 678999999998764 4799 9999999999999 89999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH-HHHhhhcchhhhhhcccccc
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA-RRDMSYGKDSLRSYGKNSLR 157 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a-~~e~~~~~~~~~~~~~~~~~ 157 (177)
|+||+||+++|+... +.|++|||.|||+++|++++...++++++.+++|++.| +.|+.+++..++...|+++.
T Consensus 286 LdId~qg~~~l~~~~---~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~~~fD~vIvNddl~ 359 (468)
T 3shw_A 286 LDVTPNAVDRLNYAQ---WYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMN 359 (468)
T ss_dssp ECCCHHHHHHHHHTT---CCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGCSEEEECBTTB
T ss_pred EEeCHHHHHHHHhcC---CCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhhccCCEEEECCCcH
Confidence 999999999999887 88999999999999999754444567778899999988 45777888888888888873
No 14
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.88 E-value=1.4e-21 Score=153.32 Aligned_cols=154 Identities=30% Similarity=0.486 Sum_probs=140.3
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|....| .+.+....+||++++++.+|..|+|.+...|..+...+.|++++.++|+.||++.+.+.+.++.|++|+
T Consensus 23 l~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi 101 (205)
T 3tr0_A 23 LVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVL 101 (205)
T ss_dssp HHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccchHHHHHHHHHcCCeEE
Confidence 5677877777 588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccchh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY 159 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~~ 159 (177)
++++++|+..+++.+ ..+.+||+.|||.+++.+||.+|+.++++++++||+++..++++...++....|+++..-
T Consensus 102 ~d~~~~~~~~~~~~~---~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~~~~~~ 176 (205)
T 3tr0_A 102 LEIDWQGARQIRELF---PPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQA 176 (205)
T ss_dssp EECCHHHHHHHHHHC---TTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGCSEEEECSSHHHH
T ss_pred EEECHHHHHHHHHhC---CCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCEEEECCCHHHH
Confidence 999999999999998 789999999999999999999999999999999999999888887777666666655443
No 15
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.87 E-value=6.9e-22 Score=159.37 Aligned_cols=154 Identities=31% Similarity=0.433 Sum_probs=122.2
Q ss_pred HHHHHh-hhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFF-QDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll-~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|++.|. ...|. +...+++|||+|+.|+.+|.+|+|++.+.|..+...+.|++++.+.++.||++.+.+.+.++.|+.|
T Consensus 43 l~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 121 (231)
T 3lnc_A 43 VANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVST 121 (231)
T ss_dssp HHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCEE
T ss_pred HHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCeE
Confidence 667787 77775 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhhcccccch
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRS 158 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~~~~~~~~ 158 (177)
+++++++|...+++.++ ..+..||+.||+.+.|.+||.+|+.++++++++||.++..+++....++..+.|.++..
T Consensus 122 ild~~~~g~~~~~~~~~--~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~ 197 (231)
T 3lnc_A 122 LLVIDWQGAFKFMEMMR--EHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEE 197 (231)
T ss_dssp EEECCHHHHHHHHHHSG--GGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHH
T ss_pred EEEcCHHHHHHHHHhcC--CCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHH
Confidence 99999999999988763 36789999999999999999999999999999999999988887766666666665544
No 16
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.6e-21 Score=162.83 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=95.4
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|.++|++++|+.|+++++. +| + +++|+|| |+++|++++++|++||
T Consensus 158 l~~~L~~~~P~~F~~~v~~-~r-----------------~-----i~~~~fi------------s~~~V~~vl~~Gk~~I 202 (308)
T 3kfv_A 158 AMQKLTAEMPDQFEIAETV-SR-----------------T-----DSPSKII------------KLDTVRVIAEKDKHAL 202 (308)
T ss_dssp HHHHHHHHCTTTEEECCCC-------------------------------CC------------CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCcccccccccc-cc-----------------c-----ccCCCee------------cHHHHHHHHHCCCcEE
Confidence 6789999999999999882 22 1 6778887 9999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH-HHHhhhcchhhhhh-cccccchh
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA-RRDMSYGKDSLRSY-GKNSLRSY 159 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a-~~e~~~~~~~~~~~-~~~~~~~~ 159 (177)
||||+||+++|+... +.|++|||.|||+++|++|+..+++++++.+++|++.| +.|+++++..++.. .|+++..-
T Consensus 203 LDId~QGa~~lk~~~---~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A 279 (308)
T 3kfv_A 203 LDVTPSAIERLNYVQ---YYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTW 279 (308)
T ss_dssp ECCCHHHHHHHHHTT---CCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTHH
T ss_pred EEECHHHHHHHHhcC---CCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHHH
Confidence 999999999999988 88999999999999999974443557777777777776 44666777778888 78777654
Q ss_pred h
Q psy9156 160 V 160 (177)
Q Consensus 160 ~ 160 (177)
+
T Consensus 280 ~ 280 (308)
T 3kfv_A 280 Y 280 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 17
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.79 E-value=2.8e-21 Score=166.66 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=100.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcce--EeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCe
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAY--HFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY--~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~ 79 (177)
|++.|..+|| -.|+ +||.++.-+..+.++ +++++..|++.+..+.|+| |++..+.|.++.++|++
T Consensus 165 l~d~l~~~F~----~~i~-~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~e--------v~seVe~i~~v~~~Gk~ 231 (337)
T 4dey_A 165 LFDFLKHRFE----GRIS-ITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAE--------VQSEIERIFELARTLQL 231 (337)
T ss_dssp HHHHHHHHTT----TSEE-EEEECSCGGGC-------------------CCCHHH--------HHHHHHHHHHHTTTCCE
T ss_pred HHHhhHHhcC----Cccc-eEeecchhhhcchhhhhcccchhhhcccccccchHH--------HHhHHHHHHHHHhCCCE
Confidence 3445555555 4554 458888777777774 5888888998888888776 56777778778889999
Q ss_pred EEEEecHH-HHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhh-cchhhhhhcccccc
Q psy9156 80 CVLDIEVQ-GVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY-GKDSLRSYGKNSLR 157 (177)
Q Consensus 80 ~il~id~~-G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~-~~~~~~~~~~~~~~ 157 (177)
||||||+| |+++|++.+ +.|++|||.|||+++|++||+.||+++.+.++++|++|+.|+.. ++..++...|+++.
T Consensus 232 vILDIDvQnGa~qlk~~~---~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~~~~~~FDyvIVNDdLe 308 (337)
T 4dey_A 232 VVLDADTINHPAQLSKTS---LAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLE 308 (337)
T ss_dssp EEEEETTCCSGGGTTTSS---CCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHSCGGGCSEEECCSSHH
T ss_pred EEEEeCcHHHHHHHHhcC---CCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhCcccCCEEEECCCHH
Confidence 99999998 999999998 89999999999999999999999997677788888888888864 77778777887654
Q ss_pred h
Q psy9156 158 S 158 (177)
Q Consensus 158 ~ 158 (177)
.
T Consensus 309 ~ 309 (337)
T 4dey_A 309 D 309 (337)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.78 E-value=1.2e-17 Score=134.58 Aligned_cols=154 Identities=29% Similarity=0.562 Sum_probs=132.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEE
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCV 81 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~i 81 (177)
|++.|...+|..+.+.+++|||+|++++.+|.+|.|.+...|..+...++|++++.+.++.||++...++++++.++.++
T Consensus 39 Ll~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~i 118 (218)
T 1z6g_A 39 LIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICL 118 (218)
T ss_dssp HHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEE
Confidence 56777777774566689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhc--chhhhhhccccc
Q psy9156 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYG--KDSLRSYGKNSL 156 (177)
Q Consensus 82 l~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~--~~~~~~~~~~~~ 156 (177)
++++++|.++.+.... ..++..+|+.+|+...|.+|+..++.++++.|.+||.++..++..+ ..++..+.+.++
T Consensus 119 l~~~lsggq~qR~~i~-~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~ 194 (218)
T 1z6g_A 119 FEMNINGVKQLKKSTH-IKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL 194 (218)
T ss_dssp EEECHHHHHHHTTCSS-CCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH
T ss_pred EEecHHHHHHHHHHhc-CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH
Confidence 9999999999886551 1256899999999999999999999999999999999998877644 334444444443
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.78 E-value=2.5e-18 Score=134.64 Aligned_cols=143 Identities=37% Similarity=0.633 Sum_probs=100.3
Q ss_pred HHHHHhhhC-CCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeE
Q psy9156 2 YSILFFQDY-PDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80 (177)
Q Consensus 2 l~~~Ll~~~-p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~ 80 (177)
|++.|.... | .+...++++||+|+.++.+|.+|.|.+.+.|..++.+|.++++..+.++.||++.+.+...++.|+.|
T Consensus 22 l~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~l~~g~~v 100 (207)
T 2j41_A 22 VRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDV 100 (207)
T ss_dssp HHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecCCCHHHHHHHHHcCCeE
Confidence 566777766 5 35667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhh
Q psy9156 81 VLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 148 (177)
Q Consensus 81 il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~ 148 (177)
|+++++.+...+++.+ +++++||+.||+.+.+.+||.+|+.++++++.+|+.....++++...++
T Consensus 101 v~d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~~~~d 165 (207)
T 2j41_A 101 FLEIEVEGAKQVRKKF---PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYD 165 (207)
T ss_dssp EEECCGGGHHHHHHHC---TTSEEEEEECCC---------------------------CGGGGGGGCS
T ss_pred EEEECHHHHHHHHHhc---CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccCC
Confidence 9999999998898877 6789999999999999999999998788899999988766655433333
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.44 E-value=1.1e-11 Score=98.20 Aligned_cols=138 Identities=41% Similarity=0.673 Sum_probs=121.8
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCC--ceeeecHHHHHHHHhCCCe
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAA--NLYGTSRAAVEAVINSGKT 79 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G--~~YGt~~~~i~~~~~~gk~ 79 (177)
|++.|....|. +.+.+++|||+|+.++.+|..|.|.+...|..+...+.|++|..+.+ +.||+++.++++.+.++..
T Consensus 36 Ll~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~ 114 (207)
T 1znw_A 36 VVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVP 114 (207)
T ss_dssp HHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCe
Confidence 56666666664 45678999999998899999999999999999999999999999988 7899999999999999999
Q ss_pred EEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhhh
Q psy9156 80 CVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 143 (177)
Q Consensus 80 ~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~ 143 (177)
++++++..|...++..+ +..+++++..|+...|-+++..++.+.+..+++++.....++..
T Consensus 115 ~~~~l~~~gl~~~~~~~---~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~ 175 (207)
T 1znw_A 115 VLIEVDLAGARAIKKTM---PEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA 175 (207)
T ss_dssp EEEECCHHHHHHHHHHC---TTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG
T ss_pred EEEEeCHHHHHHHHHhc---CCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999888 67888999999999999999999987788899999888877754
No 21
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.62 E-value=2.5e-09 Score=89.43 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=90.7
Q ss_pred HHHHHhhhCCCceeeeeee-ecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEE-EeCCceeee-cHHHHHHHHhCCC
Q psy9156 2 YSILFFQDYPDRFGFSVSH-TTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA-EFAANLYGT-SRAAVEAVINSGK 78 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~-TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~-~~~G~~YGt-~~~~i~~~~~~gk 78 (177)
|++.|.+.+|. ....+++ ++|.++++ |..+++. |.+|. .+.|++||+ ....++..+++|+
T Consensus 49 la~~L~~~~~~-~~~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~~~~~~~~~v~~~l~~g~ 111 (287)
T 1gvn_B 49 LRSAIFEETQG-NVIVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPYSNRMTEAIISRLSDQGY 111 (287)
T ss_dssp HHHHHHHHTTT-CCEEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCC-CeEEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 45667666653 2345555 77776554 4444432 55554 456889999 4567888899999
Q ss_pred eEEEEecHHHHH---HHHHHcCCC-Cc-eEEEEEcCCCHHHH--HHHH---------hhcCC--CCHHHHHHHHHHHHHH
Q psy9156 79 TCVLDIEVQGVQ---QVKRAGGAM-AG-AVYVFVKPPSIEEL--ETRL---------RGRGT--ETEDSLRRRLDLARRD 140 (177)
Q Consensus 79 ~~il~id~~G~~---~lk~~~~~~-~~-~~~IfI~pps~~~L--~~RL---------~~Rg~--es~e~I~~RL~~a~~e 140 (177)
.+|++++.+|.. ++++...+. .. .+++|+.||+...| .+|+ ..|+. ++.+.+.+||..+..+
T Consensus 112 ~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~e 191 (287)
T 1gvn_B 112 NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 191 (287)
T ss_dssp CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998865 444433110 22 35677777775554 7886 45555 3456789999999999
Q ss_pred hhhcchhhhhhcccc
Q psy9156 141 MSYGKDSLRSYGKNS 155 (177)
Q Consensus 141 ~~~~~~~~~~~~~~~ 155 (177)
+......++.+.+++
T Consensus 192 l~~~~~~d~v~v~d~ 206 (287)
T 1gvn_B 192 LHKTGLFSDIRLYNR 206 (287)
T ss_dssp HHHHTCCSCEEEECT
T ss_pred HHcCCCCCeEEEEeC
Confidence 987777777666654
No 22
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.40 E-value=1.5e-08 Score=87.48 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=66.4
Q ss_pred HHHHHhhhCCC--------ceeeeeeeecCCCCCCCCCCcceEeeCHHHH-HHHHHcCCeEEEEEeCCceeeecHHHHHH
Q psy9156 2 YSILFFQDYPD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADM-EERIAAGEFLEHAEFAANLYGTSRAAVEA 72 (177)
Q Consensus 2 l~~~Ll~~~p~--------~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF-~~~i~~g~FlE~~~~~G~~YGt~~~~i~~ 72 (177)
|...|.+.++. .+...++.||++|++.|.+|+.|||++..++ .+....+.|.++. .+.|++
T Consensus 56 La~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a----------~~~i~~ 125 (339)
T 3a8t_A 56 LSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLA----------GKAVSE 125 (339)
T ss_dssp HHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHH----------HHHHHH
Confidence 45566666652 2345678999999999999999999987776 4444444554432 345555
Q ss_pred HHhCCCeEEEE-------------------ecHHHHH---HHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 73 VINSGKTCVLD-------------------IEVQGVQ---QVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 73 ~~~~gk~~il~-------------------id~~G~~---~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+..+|+.+|+. +|++++. .+....+ ...++|++. |+.++|.+||.+|.
T Consensus 126 i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~--~~~~~i~L~-~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 126 ITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELR--YDCCFLWVD-VSVKVLTDYLAKRV 195 (339)
T ss_dssp HHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBS--SEEEEEEEE-CCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccc--cCeEEEEEe-CCHHHHHHHHHhhc
Confidence 66666666664 4555554 3332231 345555555 57899999999884
No 23
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.77 E-value=5.4e-07 Score=79.47 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=60.3
Q ss_pred HHHHHhhhCCCc--------eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHH
Q psy9156 2 YSILFFQDYPDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73 (177)
Q Consensus 2 l~~~Ll~~~p~~--------f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~ 73 (177)
|+..|.+.++.. +...+++||++|+++|.+|++|||++..+|.++...+.|++++ ...|+++
T Consensus 18 la~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a----------~~~i~~i 87 (409)
T 3eph_A 18 LSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC----------MNAIEDI 87 (409)
T ss_dssp HHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH----------HHHHHHH
Confidence 455666666532 3344788999999999999999999999999999999999886 7889999
Q ss_pred HhCCCeEEEEe
Q psy9156 74 INSGKTCVLDI 84 (177)
Q Consensus 74 ~~~gk~~il~i 84 (177)
...|+++|+..
T Consensus 88 ~~~g~~pilVG 98 (409)
T 3eph_A 88 HRRGKIPIVVG 98 (409)
T ss_dssp HTTTCEEEEEC
T ss_pred HhcCCCEEEEC
Confidence 99999998863
No 24
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.60 E-value=6.8e-07 Score=76.56 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=58.7
Q ss_pred HHHHHhhhCCCc--------eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHH
Q psy9156 2 YSILFFQDYPDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73 (177)
Q Consensus 2 l~~~Ll~~~p~~--------f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~ 73 (177)
|+..|.+.++.. +...++.||++|+++|.+|++|||++..+|.+....| .+++..++.|+++
T Consensus 19 la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~----------~F~~~a~~~i~~i 88 (322)
T 3exa_A 19 TSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVA----------DFQDLATPLITEI 88 (322)
T ss_dssp HHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHH----------HHHHHHHHHHHHH
Confidence 566777777632 3567899999999999999999999999988765554 4556678999999
Q ss_pred HhCCCeEEEEe
Q psy9156 74 INSGKTCVLDI 84 (177)
Q Consensus 74 ~~~gk~~il~i 84 (177)
.+.|+++|+.-
T Consensus 89 ~~~gk~pIlVG 99 (322)
T 3exa_A 89 HERGRLPFLVG 99 (322)
T ss_dssp HHTTCEEEEES
T ss_pred HhCCCcEEEEc
Confidence 99999998864
No 25
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.37 E-value=8.6e-05 Score=59.93 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=77.6
Q ss_pred HHHHHhhhCCCceeeeeeeecCCC-CCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC---C
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGP-RPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS---G 77 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~-R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~---g 77 (177)
++++|.+.++ ...+....++|.. +++.. .-.+|.+.+.+|.++.+... ..-+...+.. +
T Consensus 45 ~a~~L~~~~g-~~~is~~~~~r~~~~~~~~--------~g~~i~~~~~~g~~~~~~~~--------~~~~~~~l~~~~~~ 107 (243)
T 3tlx_A 45 QSLNLKKSHC-YCHLSTGDLLREAAEKKTE--------LGLKIKNIINEGKLVDDQMV--------LSLVDEKLKTPQCK 107 (243)
T ss_dssp HHHHHHHHHC-CEEEEHHHHHHHHTTSSSH--------HHHHHHHHHHTTCCCCHHHH--------HHHHHHHTTSGGGS
T ss_pred HHHHHHHHhC-CeEEecHHHHHHHHhccch--------HHHHHHHHHhcCCCCcHHHH--------HHHHHHHHhccccc
Confidence 4566766653 3556666777763 33322 23478888888988765322 2333444433 7
Q ss_pred CeEEEEecHHHHHHHHHH------cCCCCceEEEEEcCCCHHHHHHHHhhcC----------------------------
Q psy9156 78 KTCVLDIEVQGVQQVKRA------GGAMAGAVYVFVKPPSIEELETRLRGRG---------------------------- 123 (177)
Q Consensus 78 k~~il~id~~G~~~lk~~------~~~~~~~~~IfI~pps~~~L~~RL~~Rg---------------------------- 123 (177)
+.+|++..+.+..+.+.. .+..++ .+|++..|. +++.+||.+|+
T Consensus 108 ~~~ildg~p~~~~q~~~l~~~l~~~~~~~d-~vi~l~~p~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 185 (243)
T 3tlx_A 108 KGFILDGYPRNVKQAEDLNKLLQKNQTKLD-GVFYFNVPD-EVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP 185 (243)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTCCCC-EEEEEECCH-HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred CCEEecCCCCcHHHHHHHHHHHHHcCCCCc-eEEEEeCCH-HHHHHHHHcCCCCcccCcccccccCCCcccCcccccccc
Confidence 788998877666555431 111133 455666554 89999999875
Q ss_pred -----CCCHHHHHHHHHHHHHHhh
Q psy9156 124 -----TETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 124 -----~es~e~I~~RL~~a~~e~~ 142 (177)
+++++.|++||..+.++..
T Consensus 186 l~~r~dd~~e~i~~Rl~~~~~~~~ 209 (243)
T 3tlx_A 186 LIQREDDNEDVLKKRLTVFKSETS 209 (243)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3688999999999988764
No 26
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.27 E-value=3.7e-06 Score=71.85 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHHHhhhCCC--------ceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHH
Q psy9156 2 YSILFFQDYPD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73 (177)
Q Consensus 2 l~~~Ll~~~p~--------~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~ 73 (177)
|+..|.+.++. .+...+++||++|+++|.+|++|||++..+|.+.... |+++....+.|+++
T Consensus 26 la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~----------~~f~~~a~~~i~~i 95 (316)
T 3foz_A 26 LAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSA----------ADFRRDALAEMADI 95 (316)
T ss_dssp HHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccH----------HHHHHHHHHHHHHH
Confidence 55667777653 2345678899999999999999999999988775444 45566677889999
Q ss_pred HhCCCeEEEEe
Q psy9156 74 INSGKTCVLDI 84 (177)
Q Consensus 74 ~~~gk~~il~i 84 (177)
.+.|+++|+.-
T Consensus 96 ~~~g~~pilVG 106 (316)
T 3foz_A 96 TAAGRIPLLVG 106 (316)
T ss_dssp HHTTCEEEEEE
T ss_pred HhCCCcEEEEc
Confidence 99999998874
No 27
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.11 E-value=0.0006 Score=53.08 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=76.8
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC---CC
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS---GK 78 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~---gk 78 (177)
+++.|.+.+. ...+....++|....++.. .-..+.+.+..|.++.. .+....+...+.. |+
T Consensus 16 ~a~~L~~~~~-~~~i~~d~~~r~~~~~~~~-------~~~~~~~~~~~g~~~~~--------~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 16 QGERIVEKYG-IPHISTGDMFRAAMKEETP-------LGLEAKSYIDKGELVPD--------EVTIGIVKERLGKDDCER 79 (216)
T ss_dssp HHHHHHHHSS-CCEEEHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCH--------HHHHHHHHHHHTSGGGTT
T ss_pred HHHHHHHHhC-CcEEeHHHHHHHHHhcCCH-------HHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcccccC
Confidence 4566766664 2345555667764332211 23456666666766543 1222334444443 77
Q ss_pred eEEEE---ecHHHHHHHHHHcCC-CCce-EEEEEcCCCHHHHHHHHhhc-------------------------------
Q psy9156 79 TCVLD---IEVQGVQQVKRAGGA-MAGA-VYVFVKPPSIEELETRLRGR------------------------------- 122 (177)
Q Consensus 79 ~~il~---id~~G~~~lk~~~~~-~~~~-~~IfI~pps~~~L~~RL~~R------------------------------- 122 (177)
.++++ .+.+.+..+.+.... ...+ .+|++.+|. +++.+||.+|
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 88998 666766666654310 0223 677888775 8999999998
Q ss_pred --CCCCHHHHHHHHHHHHHHhh
Q psy9156 123 --GTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 123 --g~es~e~I~~RL~~a~~e~~ 142 (177)
.+++++.+++||+.+..+..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~ 180 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTA 180 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 67889999999998877654
No 28
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.07 E-value=5.8e-05 Score=61.43 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred eeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHH-HHHHHHHH--
Q psy9156 19 SHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQ-GVQQVKRA-- 95 (177)
Q Consensus 19 s~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~-G~~~lk~~-- 95 (177)
+++|++|++.|..|..|+|++..++.+ |.+ -.+.+.-.....+ +++..|+.+|++.... -.+.+...
T Consensus 42 ~~~t~~~~~~e~~~~~~~~~~~~~~~~----~~~-----~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~ 111 (253)
T 2ze6_A 42 ATGSGRPLESELQSTRRIYLDSRPLTE----GIL-----DAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPF 111 (253)
T ss_dssp TTTTTCCCGGGGTTCCEECSCCCCGGG----CSC-----CHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHhCCCeEEEeeecccc----ccc-----cHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhccc
Confidence 568999999999999999987543321 000 0001111234555 6667888888876542 12222222
Q ss_pred --cCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 96 --GGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 96 --~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
.+ ....+||+.+|+.+.+.+|+.+|++
T Consensus 112 ~~~~--~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 112 WRSG--FQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp TTSS--CEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cccc--CceEEEEecchhHHHHHHHHHHHHH
Confidence 11 4568999999988999999999863
No 29
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.73 E-value=4.5e-05 Score=65.21 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCcee--------eeeeeecCCCCCCCCCCcceEeeCH
Q psy9156 2 YSILFFQDYPDRFG--------FSVSHTTRGPRPGEVDGKAYHFVTR 40 (177)
Q Consensus 2 l~~~Ll~~~p~~f~--------~~is~TTR~~R~gE~~G~dY~Fvs~ 40 (177)
|+..|.+..+..+. ...+++|++|+++|.+|+.|||++.
T Consensus 21 la~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~ 67 (323)
T 3crm_A 21 LAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDI 67 (323)
T ss_dssp HHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSC
T ss_pred HHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeec
Confidence 45666666542221 1247799999999999999998754
No 30
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.66 E-value=0.0054 Score=47.48 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=75.2
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC---CC
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS---GK 78 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~---gk 78 (177)
+++.|.+.+. ...+....++|....++. -.-.++.+.+..|.++.. .+....+.+.+.. |+
T Consensus 16 ~a~~L~~~~~-~~~i~~d~~~r~~~~~~~-------~~~~~~~~~~~~g~~~~~--------~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 16 QAEQIIEKYE-IPHISTGDMFRAAIKNGT-------ELGLKAKSFMDQGNLVPD--------EVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp HHHHHHHHHC-CCEEEHHHHHHHHHHTTC-------HHHHHHHHHHHHTCCCCH--------HHHHHHHHHHHTSGGGTT
T ss_pred HHHHHHHHhC-CcEeeHHHHHHHHHhcCC-------HHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcccCCC
Confidence 4566656553 233444456665432211 123456666667766543 1222334444443 77
Q ss_pred eEEEE---ecHHHHHHHHHHcCC-CCce-EEEEEcCCCHHHHHHHHhhc-------------------------------
Q psy9156 79 TCVLD---IEVQGVQQVKRAGGA-MAGA-VYVFVKPPSIEELETRLRGR------------------------------- 122 (177)
Q Consensus 79 ~~il~---id~~G~~~lk~~~~~-~~~~-~~IfI~pps~~~L~~RL~~R------------------------------- 122 (177)
.+|++ .+...+..+.+.... ...+ .+|++.+|. +++.+|+.+|
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQ-EELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 88888 667777766654310 0223 678888764 9999999998
Q ss_pred --CCCCHHHHHHHHHHHHHHhh
Q psy9156 123 --GTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 123 --g~es~e~I~~RL~~a~~e~~ 142 (177)
.+++++.+++||+.+..+..
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~ 180 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQ 180 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhHH
Confidence 56789999999998877664
No 31
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=2.2e-05 Score=61.83 Aligned_cols=140 Identities=20% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHHHHhhhCCCceeeeeeeecCC-CCCCCCCCcce-------EeeCHHHHHHHHHcCCeEEEEEeCCc-eee--ecHHHH
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRG-PRPGEVDGKAY-------HFVTRADMEERIAAGEFLEHAEFAAN-LYG--TSRAAV 70 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~-~R~gE~~G~dY-------~Fvs~~eF~~~i~~g~FlE~~~~~G~-~YG--t~~~~i 70 (177)
+++.|.+.+.- ..+.+..++|. ++.++..|..+ .+++.+.|..++++.-+.+....+|. .+| -+.+.+
T Consensus 21 ~~~~La~~l~~-~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vidg~~~~~~~~ 99 (222)
T 1zak_A 21 QCELIKTKYQL-AHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQA 99 (222)
T ss_dssp HHHHHHHHHCC-EECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHH
T ss_pred HHHHHHHHhCC-ceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCcEEEECCCCCHHHH
Confidence 45666665542 22333345554 33333333322 16777777765543221111111121 233 333444
Q ss_pred HHHHhCCC--eEEEEecHHHHHHHHHHcCCC-----CceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy9156 71 EAVINSGK--TCVLDIEVQGVQQVKRAGGAM-----AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 71 ~~~~~~gk--~~il~id~~G~~~lk~~~~~~-----~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~ 142 (177)
....+.|. .+++.+|......+++..... -..+.+|+.||+.+.+.+||.+|++++.+.|++||..+..+.+
T Consensus 100 ~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~ 178 (222)
T 1zak_A 100 MALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIE 178 (222)
T ss_dssp HHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44443332 344555554444454432100 1357788899998888889999988888999999998877553
No 32
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.15 E-value=0.018 Score=42.70 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=52.4
Q ss_pred eeecHHHHHHHH---hCCCeEEEEecHHH---HHHHHH---HcCCCCceEEEEEcCCCHHHHHHHHhhcC--CCCHHHHH
Q psy9156 63 YGTSRAAVEAVI---NSGKTCVLDIEVQG---VQQVKR---AGGAMAGAVYVFVKPPSIEELETRLRGRG--TETEDSLR 131 (177)
Q Consensus 63 YGt~~~~i~~~~---~~gk~~il~id~~G---~~~lk~---~~~~~~~~~~IfI~pps~~~L~~RL~~Rg--~es~e~I~ 131 (177)
+.+....+...+ ..|+.+|++....+ ...+++ ..+ ....+||+.+ +.+++.+|+.+|+ ..+++.++
T Consensus 61 ~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~--~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~i~ 137 (181)
T 1ly1_A 61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG--WKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLR 137 (181)
T ss_dssp HHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHT--CEEEEEECCC-CHHHHHHHHTTCGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeC-CHHHHHHHHhccccCCCCHHHHH
Confidence 344445677777 78999998764322 222332 232 3457889986 4699999999997 56788899
Q ss_pred HHHHHHHHHh
Q psy9156 132 RRLDLARRDM 141 (177)
Q Consensus 132 ~RL~~a~~e~ 141 (177)
++++......
T Consensus 138 ~~~~~~~~~~ 147 (181)
T 1ly1_A 138 SMYKSMREYL 147 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccC
Confidence 9998887763
No 33
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.00 E-value=0.0019 Score=51.67 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=68.5
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeE-EEEE---eCCceeeecHHHHHHHHhCC
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFL-EHAE---FAANLYGTSRAAVEAVINSG 77 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~Fl-E~~~---~~G~~YGt~~~~i~~~~~~g 77 (177)
+++.|.+..+. ...+ .+||.|+..+ .-+.+.+++.++..+ .+.. +..+.+....+.|...+++|
T Consensus 42 ~~~~l~~~l~~--~~~~-~~~~~p~~~~---------~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g 109 (229)
T 4eaq_A 42 VINEVYHRLVK--DYDV-IMTREPGGVP---------TGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEG 109 (229)
T ss_dssp HHHHHHHHHTT--TSCE-EEECTTTTCH---------HHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHHHTT
T ss_pred HHHHHHHHHhc--CCCc-eeecCCCCCc---------hHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45566665543 2333 4677775432 145677777777641 1111 11223333333456677899
Q ss_pred CeEEEE---------------ecHHHHHHHHHHcCCC-CceEEEEEcCCCHHHHHHHHhhcCCC------CHHHHHHHHH
Q psy9156 78 KTCVLD---------------IEVQGVQQVKRAGGAM-AGAVYVFVKPPSIEELETRLRGRGTE------TEDSLRRRLD 135 (177)
Q Consensus 78 k~~il~---------------id~~G~~~lk~~~~~~-~~~~~IfI~pps~~~L~~RL~~Rg~e------s~e~I~~RL~ 135 (177)
+++|+| ++..-+..+....... ..-.+||+..| .+++.+|+.+|+.. ...++.+|+.
T Consensus 110 ~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~ 188 (229)
T 4eaq_A 110 KVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRDQNRLDQEDLKFHEKVI 188 (229)
T ss_dssp CEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC-----CCCHHHHHHHHHHH
T ss_pred CEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCCccchhhhhHHHHHHHH
Confidence 999998 4555444444321100 12356777766 48999999998632 1345777777
Q ss_pred HHHHHhh
Q psy9156 136 LARRDMS 142 (177)
Q Consensus 136 ~a~~e~~ 142 (177)
.+..++.
T Consensus 189 ~~y~~l~ 195 (229)
T 4eaq_A 189 EGYQEII 195 (229)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7666653
No 34
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.083 Score=38.31 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHHHHH--hCCCeEEEEe--cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC----CCHHHHHHHHHH
Q psy9156 68 AAVEAVI--NSGKTCVLDI--EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT----ETEDSLRRRLDL 136 (177)
Q Consensus 68 ~~i~~~~--~~gk~~il~i--d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~----es~e~I~~RL~~ 136 (177)
..+...+ ..++.+|++- ++.-...+++.++ ....+||+.+| .+++.+|+..|+. .+.+++.+|+.+
T Consensus 67 ~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~--~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~r~~~ 140 (179)
T 3lw7_A 67 RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG--DSVYIVAVHSP-PKIRYKRMIERLRSDDSKEISELIRRDRE 140 (179)
T ss_dssp HHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC--SCEEEEEEECC-HHHHHHHHHTCC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC--CCcEEEEEECC-HHHHHHHHHhccCCCCcchHHHHHHHHHh
Confidence 3344555 6677888873 4555566777663 34567888876 5999999999987 678888888754
No 35
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.63 E-value=0.0014 Score=52.99 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=68.4
Q ss_pred eecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEE---eCCceeeecHHHHHHHHhCCCeEEEE-------------
Q psy9156 20 HTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE---FAANLYGTSRAAVEAVINSGKTCVLD------------- 83 (177)
Q Consensus 20 ~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~---~~G~~YGt~~~~i~~~~~~gk~~il~------------- 83 (177)
.+||.|+..+. -+.+.+.+.+|++-.+.+ |..+.|....+.|...+++|++||+|
T Consensus 61 ~~~rep~~t~~---------g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~ 131 (227)
T 3v9p_A 61 VVTREPGGTRL---------GETLREILLNQPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGG 131 (227)
T ss_dssp EEEESSSSSHH---------HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTT
T ss_pred eeecCCCCChH---------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhc
Confidence 47898853321 246888888775332222 55677887777888999999999988
Q ss_pred --ecHHHHHHHHHHc-CCCCceEEEEEcCCCHHHHHHHHhhcCC----CC-HHHHHHHHHHHHHHh
Q psy9156 84 --IEVQGVQQVKRAG-GAMAGAVYVFVKPPSIEELETRLRGRGT----ET-EDSLRRRLDLARRDM 141 (177)
Q Consensus 84 --id~~G~~~lk~~~-~~~~~~~~IfI~pps~~~L~~RL~~Rg~----es-~e~I~~RL~~a~~e~ 141 (177)
++.+-+..+.... +....-.+||+..|. +++.+|+.+|+. |. ..+..+|+..+-.++
T Consensus 132 ~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~-e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~l 196 (227)
T 3v9p_A 132 RGLPRDKLEALERWVQGGFQPDLTVLFDVPP-QIASARRGAVRMPDKFESESDAFFARTRAEYLRR 196 (227)
T ss_dssp TCCCHHHHHHHHHHHHTTCCCSEEEEEECCS-SCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhccCccchhhhhHHHHHHHHHHHHHH
Confidence 2334344443321 110123567777765 889999999862 22 234556665554444
No 36
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.60 E-value=0.049 Score=40.46 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=42.9
Q ss_pred eeeecHHHHHHHHhCCCeEEEEecH-HH---HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCC
Q psy9156 62 LYGTSRAAVEAVINSGKTCVLDIEV-QG---VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126 (177)
Q Consensus 62 ~YGt~~~~i~~~~~~gk~~il~id~-~G---~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es 126 (177)
.|+.....+...++.|..+|++... ++ ...+++.+.. ...++||+.+ |.+++.+|+.+|+...
T Consensus 71 ~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~-~~e~l~~R~~~r~~~~ 137 (178)
T 1qhx_A 71 LEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGD-LDVLWVGVRC-DGAVAEGRETARGDRV 137 (178)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTT-CCEEEEEEEC-CHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcC-CcEEEEEEEC-CHHHHHHHHHhhCCcc
Confidence 3555555677778889999998864 22 2355555521 2346788886 5799999999998644
No 37
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.60 E-value=0.0055 Score=53.29 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=51.6
Q ss_pred eeeecHHHHHHHHhCCCeEEEEec------HHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC------CCHHH
Q psy9156 62 LYGTSRAAVEAVINSGKTCVLDIE------VQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT------ETEDS 129 (177)
Q Consensus 62 ~YGt~~~~i~~~~~~gk~~il~id------~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~------es~e~ 129 (177)
.|+.....+...+.+|+.+|++.. .+....+.+..+ ....+||+.+ +.+++.+|+.+|+. +.+++
T Consensus 294 ~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~--~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~ 370 (416)
T 3zvl_A 294 SWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAG--VPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDM 370 (416)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHT--CCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcC--CeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHH
Confidence 367777788888999999998843 344555544443 5566777765 57999999999864 34455
Q ss_pred HHHHHHHHHHHh
Q psy9156 130 LRRRLDLARRDM 141 (177)
Q Consensus 130 I~~RL~~a~~e~ 141 (177)
+-+++..+.++.
T Consensus 371 ~~~~~~~~~e~P 382 (416)
T 3zvl_A 371 VMFSYRKQFEPP 382 (416)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHHhcCCC
Confidence 555655544443
No 38
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.22 E-value=0.0013 Score=56.52 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHhhhCCC------c--eeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHH
Q psy9156 2 YSILFFQDYPD------R--FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73 (177)
Q Consensus 2 l~~~Ll~~~p~------~--f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~ 73 (177)
|+..|.+..+. . +....+.+|++|++.|..|..|||++..++.+....+ .+.-.....+..+
T Consensus 23 la~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~----------dF~~~a~~~i~~i 92 (340)
T 3d3q_A 23 LSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAY----------EFKKRAEKYIKDI 92 (340)
T ss_dssp HHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHH----------HHHHHHHHHHHHH
Confidence 45556665541 1 2456678999999999999999998755543322112 2223345677778
Q ss_pred HhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHH---HHHHHh---hcCCCCHHHHHHHHHHHHHH
Q psy9156 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEE---LETRLR---GRGTETEDSLRRRLDLARRD 140 (177)
Q Consensus 74 ~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~---L~~RL~---~Rg~es~e~I~~RL~~a~~e 140 (177)
+..|+.+|+. .|.-.+.+.. ...+.+|..|.+.+. +++|+. .+| .+.+..+|+....+
T Consensus 93 ~~~g~~~Ilv---GGt~ly~~~l---~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G---~~~l~~~L~~vdP~ 156 (340)
T 3d3q_A 93 TRRGKVPIIA---GGTGLYIQSL---LYNYAFEDESISEDKMKQVKLKLKELEHLN---NNKLHEYLASFDKE 156 (340)
T ss_dssp HHTTCEEEEE---CCCHHHHHHH---HBCSCCC---CCHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHCHH
T ss_pred HhCCCcEEEE---CChhhhHHHH---HhcccccCCCCChHHHHHHHHHHHHHHhcC---HHHHHHHHHhhCcH
Confidence 8889888773 2332333333 222335555233332 777774 333 35666666655433
No 39
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.90 E-value=0.17 Score=38.02 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=43.9
Q ss_pred HHHHHHhCCCeEEEEe---cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHH
Q psy9156 69 AVEAVINSGKTCVLDI---EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE------TEDSLRRRLDLARR 139 (177)
Q Consensus 69 ~i~~~~~~gk~~il~i---d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e------s~e~I~~RL~~a~~ 139 (177)
.+...+..|..+|++- .......+.+..+ .++ ++||+.+| .+++.+|+.+|+.. +.+++.+|+.....
T Consensus 83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~-~~~-~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~ 159 (199)
T 2bwj_A 83 AMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQ-LVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYR 159 (199)
T ss_dssp HHHHHTTSCSCEEEETCCSSHHHHHHHHHHTC-CCS-EEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCccEEEeCCCCCHHHHHHHHHhcC-CCC-EEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444445688888873 2333444554432 033 68999986 58999999999752 24678888766544
Q ss_pred Hh
Q psy9156 140 DM 141 (177)
Q Consensus 140 e~ 141 (177)
+.
T Consensus 160 ~~ 161 (199)
T 2bwj_A 160 AS 161 (199)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 40
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.84 E-value=0.11 Score=38.86 Aligned_cols=93 Identities=22% Similarity=0.382 Sum_probs=56.5
Q ss_pred HHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHH---HHHHHHcCCCCceEEEEEcCCCHHHHHHH
Q psy9156 42 DMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGV---QQVKRAGGAMAGAVYVFVKPPSIEELETR 118 (177)
Q Consensus 42 eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~---~~lk~~~~~~~~~~~IfI~pps~~~L~~R 118 (177)
.+.+.+.+|+++.. ...+..-...+...+..|+.+|++..+.+. ..+..... ..-.+||+.+| .+++.+|
T Consensus 57 ~i~~~~~~g~~~~~----~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~--~~~~vi~l~~~-~e~~~~R 129 (196)
T 2c95_A 57 KLSEIMEKGQLVPL----ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG--QPTLLLYVDAG-PETMTQR 129 (196)
T ss_dssp HHHHHHHTTCCCCH----HHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTC--CCSEEEEEECC-HHHHHHH
T ss_pred HHHHHHHcCCcCCH----HHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcC--CCCEEEEEECC-HHHHHHH
Confidence 44455556664322 112344445566666688899998533333 33333332 22367888875 5999999
Q ss_pred HhhcCC------CCHHHHHHHHHHHHHHh
Q psy9156 119 LRGRGT------ETEDSLRRRLDLARRDM 141 (177)
Q Consensus 119 L~~Rg~------es~e~I~~RL~~a~~e~ 141 (177)
+.+|+. ++.+.+.+|+.....+.
T Consensus 130 ~~~R~~~~~~~~~~~~~~~~r~~~~~~~~ 158 (196)
T 2c95_A 130 LLKRGETSGRVDDNEETIKKRLETYYKAT 158 (196)
T ss_dssp HHHHHTSSSCGGGSHHHHHHHHHHHHHHT
T ss_pred HHccCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 988862 46778899987765543
No 41
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.75 E-value=0.35 Score=36.61 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCC-eEEEEec---HHHHHHHHHHcCCCCceEEEEEcCCCHHHHH
Q psy9156 41 ADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGK-TCVLDIE---VQGVQQVKRAGGAMAGAVYVFVKPPSIEELE 116 (177)
Q Consensus 41 ~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk-~~il~id---~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~ 116 (177)
+.+.+.+.+|++... ...+..-.+.+...+..|+ .++++.- ......+..... ...++||+.+|. +++.
T Consensus 63 ~~i~~~~~~g~~~~~----~~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~--~~~~~i~l~~~~-e~~~ 135 (203)
T 1ukz_A 63 ELIKNCIKEGQIVPQ----EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV--ESKFILFFDCPE-DIML 135 (203)
T ss_dssp HHHHHHHHTTCCCCH----HHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTC--CCSEEEEEECCH-HHHH
T ss_pred HHHHHHHHcCCcCCH----HHHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcC--CCCEEEEEECCH-HHHH
Confidence 344555555654321 1122333455666677774 5665532 444455555442 224688999875 8899
Q ss_pred HHHhhcC------CCCHHHHHHHHHHHHH
Q psy9156 117 TRLRGRG------TETEDSLRRRLDLARR 139 (177)
Q Consensus 117 ~RL~~Rg------~es~e~I~~RL~~a~~ 139 (177)
+|+.+|+ +++.+.+++|+....+
T Consensus 136 ~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~ 164 (203)
T 1ukz_A 136 ERLLERGKTSGRSDDNIESIKKRFNTFKE 164 (203)
T ss_dssp HHHHHHHHHHCCTTCSHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHHH
Confidence 9998775 3568888999876543
No 42
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.09 E-value=0.031 Score=45.24 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=63.7
Q ss_pred eeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcC----CeE---EEEEeCCceeeecHHHHHHHHhCCCeEEEE-----
Q psy9156 16 FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAG----EFL---EHAEFAANLYGTSRAAVEAVINSGKTCVLD----- 83 (177)
Q Consensus 16 ~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g----~Fl---E~~~~~G~~YGt~~~~i~~~~~~gk~~il~----- 83 (177)
+.+..+||.|+..+ --+.+.+.+..+ .+- |.--|..+.|....+.|...+++|++||+|
T Consensus 56 ~~~~~~~rep~~t~---------~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~I~paL~~g~~VI~DRy~~S 126 (236)
T 3lv8_A 56 IDHITRTREPGGTL---------LAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMS 126 (236)
T ss_dssp CCCEEEEESSCSSH---------HHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHH
T ss_pred CCeeeeecCCCCCH---------HHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeecch
Confidence 45467899884221 136677776521 221 111234456666667788889999999998
Q ss_pred ----------ecHHHHHHHHHHc-CCCCceEEEEEcCCCHHHHHHHHhhcCC----CC-HHHHHHHHHHHHHHhh
Q psy9156 84 ----------IEVQGVQQVKRAG-GAMAGAVYVFVKPPSIEELETRLRGRGT----ET-EDSLRRRLDLARRDMS 142 (177)
Q Consensus 84 ----------id~~G~~~lk~~~-~~~~~~~~IfI~pps~~~L~~RL~~Rg~----es-~e~I~~RL~~a~~e~~ 142 (177)
+|.+-+..+.... +....-.+||+..| .+++.+|+.+|+. +. ..+..+|+..+-.++.
T Consensus 127 ~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la 200 (236)
T 3lv8_A 127 SQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARGRGELDRIEKMDISFFERARERYLELA 200 (236)
T ss_dssp HHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 2233333443321 11012356777776 4999999999873 11 2466777777665554
No 43
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.08 E-value=0.33 Score=36.88 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCeEEEEe---cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 68 AAVEAVINSGKTCVLDI---EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..+...+..|..+|++. .......++...+ ....+|++.+| .+++.+|+.+|+.
T Consensus 77 ~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~--~~~~vi~l~~~-~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 77 AAIGERLASREPVVVSCSALKRSYRDKLRESAP--GGLAFVFLHGS-ESVLAERMHHRTG 133 (202)
T ss_dssp HHHHHHHTSSSCCEEECCCCSHHHHHHHHHTST--TCCEEEEEECC-HHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcC--CCeEEEEEeCC-HHHHHHHHHHhhc
Confidence 44556667888888884 4666666666552 22567888875 6999999999864
No 44
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.06 E-value=0.38 Score=38.82 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHH---hCCCeEEEEecH---HHHHHHHH---HcCCCCceEEEEEcCCCHHHHHHHHhhcC--CCCHHHHHHHHHH
Q psy9156 68 AAVEAVI---NSGKTCVLDIEV---QGVQQVKR---AGGAMAGAVYVFVKPPSIEELETRLRGRG--TETEDSLRRRLDL 136 (177)
Q Consensus 68 ~~i~~~~---~~gk~~il~id~---~G~~~lk~---~~~~~~~~~~IfI~pps~~~L~~RL~~Rg--~es~e~I~~RL~~ 136 (177)
+.+...+ ..|..+|++... .-...+++ ..+ ....+||+.+ +.+++.+|+.+|+ ..+++.|+++++.
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~--~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~e~i~~~~~~ 142 (301)
T 1ltq_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG--WKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLRSMYKS 142 (301)
T ss_dssp HHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTT--CEEEEEECCC-CHHHHHHHHHHCGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcC--CcEEEEEEEC-CHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3445566 788888887633 11223332 222 3457899987 4699999999997 3568889999988
Q ss_pred HHHHh
Q psy9156 137 ARRDM 141 (177)
Q Consensus 137 a~~e~ 141 (177)
.....
T Consensus 143 ~~~~~ 147 (301)
T 1ltq_A 143 MREYL 147 (301)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76553
No 45
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.98 E-value=0.086 Score=39.58 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCeEEEEE---eCCceeeecHHHHHHHHhCCCeEEEE---------------ecHHHHHHHHHHcCC-CCc
Q psy9156 41 ADMEERIAAGEFLEHAE---FAANLYGTSRAAVEAVINSGKTCVLD---------------IEVQGVQQVKRAGGA-MAG 101 (177)
Q Consensus 41 ~eF~~~i~~g~FlE~~~---~~G~~YGt~~~~i~~~~~~gk~~il~---------------id~~G~~~lk~~~~~-~~~ 101 (177)
+.+.+.+.+|.+-.+.. +..+.+..... +...+.+|..++++ ++......+...... ...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (197)
T 2z0h_A 44 EKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIP 122 (197)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCC
Confidence 45555555555433322 22334444444 66667789888887 444444444322200 012
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS 142 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~ 142 (177)
-.+||+.+| .+++.+|+.+|+..+.+++.+|+...-.++.
T Consensus 123 d~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~ 162 (197)
T 2z0h_A 123 DLTFYIDVD-VETALKRKGELNRFEKREFLERVREGYLVLA 162 (197)
T ss_dssp SEEEEEECC-HHHHHHHC---CCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-HHHHHHHHhccCcccHHHHHHHHHHHHHHHH
Confidence 346777765 5999999999976555577777776655553
No 46
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.02 E-value=0.79 Score=34.38 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHhCCCeEEEEecHHH--------------HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHh-hcC
Q psy9156 69 AVEAVINSGKTCVLDIEVQG--------------VQQVKRAGGAMAGAVYVFVKPPSIEELETRLR-GRG 123 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~~G--------------~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~-~Rg 123 (177)
.+...+..|..+|+|-.+.. +..+....+ ...++||+..| .+++.+|+. +|+
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vi~l~~~-~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAI--KPDITFYIRVS-PDIALERIKKSKR 144 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSC--CCSEEEEEECC-HHHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCC--CCCEEEEEeCC-HHHHHHHHhcccc
Confidence 34556778998888864432 223322221 12357888875 589999998 887
No 47
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.68 E-value=0.22 Score=37.09 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=38.5
Q ss_pred eeecHHHHHHHHhCCCeEEEEecHHH------HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 63 YGTSRAAVEAVINSGKTCVLDIEVQG------VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 63 YGt~~~~i~~~~~~gk~~il~id~~G------~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
|+.....+..+++.|..+|++..... ...++...+ ...++||+.+| .+++.+|+.+|+.
T Consensus 63 ~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 63 IMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAP--FTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSC--CEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcC--CeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 34444456667788999999876622 222444432 33467888865 6999999988863
No 48
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.53 E-value=0.36 Score=36.62 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=29.4
Q ss_pred EEEEEcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHh
Q psy9156 103 VYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDM 141 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~--es~e~I~~RL~~a~~e~ 141 (177)
.+|++..| .+++.+|+.+|++ ++.+.+++|++....+.
T Consensus 129 ~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~ 168 (201)
T 2cdn_A 129 AVLEFRVS-EEVLLERLKGRGRADDTDDVILNRMKVYRDET 168 (201)
T ss_dssp EEEEEECC-HHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHT
T ss_pred EEEEEECC-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Confidence 67888876 4899999998864 56788999987766543
No 49
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.95 E-value=0.086 Score=41.70 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=67.7
Q ss_pred HHHHhhhCCCceeeeeeeecCCCCCCCCCCcceEeeCHHHHHHHHHcCCeEE---EEE---eCCceeeecHHHHHHHHhC
Q psy9156 3 SILFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLE---HAE---FAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 3 ~~~Ll~~~p~~f~~~is~TTR~~R~gE~~G~dY~Fvs~~eF~~~i~~g~FlE---~~~---~~G~~YGt~~~~i~~~~~~ 76 (177)
++.|.+.... .++.+ .+||.|+..+. -+.+.+.+.++..-+ +++ |..+.+..-.+.|...+++
T Consensus 23 ~~~l~~~l~~-~~~~v-~~~~~p~~~~~---------g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~ 91 (213)
T 4edh_A 23 RDYLAERLRE-RGIEV-QLTREPGGTPL---------AERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALAR 91 (213)
T ss_dssp HHHHHHHHHT-TTCCE-EEEESSCSSHH---------HHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHH-cCCCc-ccccCCCCCHH---------HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444443322 12344 57888842211 245777777664211 111 2233444444557778889
Q ss_pred CCeEEEEe---------------cHHHHHHHHHHc-CCCCceEEEEEcCCCHHHHHHHHhhcCC-C---C-HHHHHHHHH
Q psy9156 77 GKTCVLDI---------------EVQGVQQVKRAG-GAMAGAVYVFVKPPSIEELETRLRGRGT-E---T-EDSLRRRLD 135 (177)
Q Consensus 77 gk~~il~i---------------d~~G~~~lk~~~-~~~~~~~~IfI~pps~~~L~~RL~~Rg~-e---s-~e~I~~RL~ 135 (177)
|++||+|= |.+-+..+.... +....-.+||+..| .+++.+|+.+|+. + . ..+..+|+.
T Consensus 92 g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~ 170 (213)
T 4edh_A 92 GAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAARGRLDRFEQEDRRFFEAVR 170 (213)
T ss_dssp TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCCCSSCCTTTTSCHHHHHHHH
T ss_pred CCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCcCcccccHHHHHHHHH
Confidence 99998872 333334443321 11012356777776 5999999999863 1 1 135666766
Q ss_pred HHHHHh
Q psy9156 136 LARRDM 141 (177)
Q Consensus 136 ~a~~e~ 141 (177)
.+-.++
T Consensus 171 ~~y~~l 176 (213)
T 4edh_A 171 QTYLQR 176 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 50
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.92 E-value=1.1 Score=32.91 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=33.0
Q ss_pred HHHhCCCeEEEEec---HHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 72 AVINSGKTCVLDIE---VQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 72 ~~~~~gk~~il~id---~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..+..|..+|++.. ......+++.. ....+||+.+| .+++.+|+.+|+.
T Consensus 75 ~~~~~~~~~vi~~~~~~~~~~~~l~~~~---~~~~vv~l~~~-~e~~~~R~~~R~~ 126 (175)
T 1knq_A 75 AMQRTNKVSLIVCSALKKHYRDLLREGN---PNLSFIYLKGD-FDVIESRLKARKG 126 (175)
T ss_dssp HHHHHCSEEEEECCCCSHHHHHHHHTTC---TTEEEEEEECC-HHHHHHHHHTSTT
T ss_pred HHHhcCCcEEEEeCchHHHHHHHHHhcC---CCEEEEEEECC-HHHHHHHHHhccC
Confidence 34456778887753 33334444433 45588999976 5999999999974
No 51
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.75 E-value=0.82 Score=36.27 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=42.2
Q ss_pred hCCCeEEEEecH---HHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHh
Q psy9156 75 NSGKTCVLDIEV---QGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRDM 141 (177)
Q Consensus 75 ~~gk~~il~id~---~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg------~es~e~I~~RL~~a~~e~ 141 (177)
..++..|+|-=| .=+..+.+... ....+|++..|. +++.+||.+|+ +++++.|++||+...++.
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~~~--~~~~vi~l~v~~-e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t 178 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKEVC--PCLCVINFDVSE-EVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT 178 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHHTC--CCSEEEEEECCH-HHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred ccccCcccccCCCcHHHHHHHHHhCC--ccCEEEeccCCH-HHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 345567887633 33444544442 234678888875 99999998884 345778999998877654
No 52
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.20 E-value=0.61 Score=35.24 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeEEEEe---------------cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC-CCCHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDI---------------EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG-TETEDSLR 131 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---------------d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg-~es~e~I~ 131 (177)
..+...+.+|..+|++- +.+....+..... ....+||+.+| .+++.+|+.+|. +....++.
T Consensus 84 ~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~--~~d~vi~l~~~-~e~~~~Rl~r~~~~~~~~~~~ 160 (215)
T 1nn5_A 84 PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLP--KPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQ 160 (215)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSB--CCSEEEEEECC-HHHHHHC-----CTTCSHHHH
T ss_pred HHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCC--CCCEEEEEeCC-HHHHHHHhccCccccchHHHH
Confidence 35667778898888872 2222222221111 12367888876 589999986442 22234566
Q ss_pred HHHHHHHHHh
Q psy9156 132 RRLDLARRDM 141 (177)
Q Consensus 132 ~RL~~a~~e~ 141 (177)
+|+..+..++
T Consensus 161 ~~~~~~~~~~ 170 (215)
T 1nn5_A 161 ERALRCFHQL 170 (215)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776655554
No 53
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.47 E-value=1.9 Score=31.62 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHHHHHhC-CCeEEEEecH-------HHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 68 AAVEAVINS-GKTCVLDIEV-------QGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 68 ~~i~~~~~~-gk~~il~id~-------~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
+.+...++. |..++++... .....+++.. ..+..||+..| .+++.+|+.+|+
T Consensus 67 ~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~---~~~~~i~l~~~-~e~~~~R~~~R~ 126 (183)
T 2vli_A 67 DALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRG---LSVHHFTLIAP-LNVVLERLRRDG 126 (183)
T ss_dssp HHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTT---CCCEEEEEECC-HHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcC---CceEEEEEeCC-HHHHHHHHHhcc
Confidence 344555665 7778877542 2233344332 34566899876 599999999986
No 54
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.21 E-value=0.47 Score=35.08 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCHHHHH-HHHhh--cCC--CCHHHHHHHHHH
Q psy9156 100 AGAVYVFVKPPSIEELE-TRLRG--RGT--ETEDSLRRRLDL 136 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~-~RL~~--Rg~--es~e~I~~RL~~ 136 (177)
++ ++||+.+|. +++. +|+.. |++ ++.+++..+...
T Consensus 115 ~~-~~i~l~~~~-~~~~~rRl~~~~R~r~~~~~~~~~~~~~~ 154 (192)
T 1kht_A 115 PD-LIIVVETTG-DEILMRRMSDETRVRDLDTASTIEQHQFM 154 (192)
T ss_dssp CS-EEEEEECCH-HHHHHHHHTSSSCSSSCCCHHHHHHHHHH
T ss_pred CC-EEEEEeCCH-HHHHHHHhhhcccCCCcCCHHHHHHHHHH
Confidence 44 489999875 7776 59977 653 455556555443
No 55
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.06 E-value=2.2 Score=31.38 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=27.8
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
-.+||+..|. +++.+|+.+|+..+.+++.+|+.....+.
T Consensus 124 d~vi~l~~~~-e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~ 162 (195)
T 2pbr_A 124 DITLLLDIPV-DIALRRLKEKNRFENKEFLEKVRKGFLEL 162 (195)
T ss_dssp SEEEEEECCH-HHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCH-HHHHHHhhccCccchHHHHHHHHHHHHHH
Confidence 3678888764 89999998887655566777776544443
No 56
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.58 E-value=0.42 Score=37.23 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC--CCeEEEEecHHH---HHHHHHH---cCCCCceEEEEEcCCCH
Q psy9156 41 ADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS--GKTCVLDIEVQG---VQQVKRA---GGAMAGAVYVFVKPPSI 112 (177)
Q Consensus 41 ~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~--gk~~il~id~~G---~~~lk~~---~~~~~~~~~IfI~pps~ 112 (177)
+.+.+.+.+|+++.. -.-...|...+.+ |+.+|++.-+.+ +..+.+. .+..++ .+|++..| .
T Consensus 47 ~~i~~~~~~g~~~~~--------~~~~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d-~vi~l~~~-~ 116 (223)
T 2xb4_A 47 KKAKEFIDRGDLVPD--------DITIPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKIN-FVIEILLP-R 116 (223)
T ss_dssp HHHHHHHTTTCCCCH--------HHHHHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCC-EEEEEECC-H
T ss_pred HHHHHHHHcCCcCcH--------HHHHHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCC-EEEEEECC-H
Confidence 455666666664322 1123346666666 888998854443 3334322 110122 56777776 4
Q ss_pred HHHHHHHhhcC
Q psy9156 113 EELETRLRGRG 123 (177)
Q Consensus 113 ~~L~~RL~~Rg 123 (177)
+++.+|+.+|+
T Consensus 117 e~~~~Rl~~R~ 127 (223)
T 2xb4_A 117 EVAKNRIMGRR 127 (223)
T ss_dssp HHHHHHHHTBC
T ss_pred HHHHHHHHccc
Confidence 89999999886
No 57
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.71 E-value=0.72 Score=36.09 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=43.8
Q ss_pred HHHHHhCCCeEEEEecHHHHH---HHHH---HcCCCCceEEEEEcCCCHHHHHHHHhhc---------------------
Q psy9156 70 VEAVINSGKTCVLDIEVQGVQ---QVKR---AGGAMAGAVYVFVKPPSIEELETRLRGR--------------------- 122 (177)
Q Consensus 70 i~~~~~~gk~~il~id~~G~~---~lk~---~~~~~~~~~~IfI~pps~~~L~~RL~~R--------------------- 122 (177)
|.+.+.+....|+|-=|.-.. .|.. ..+- .--.+|++..|+ +++.+|+.+|
T Consensus 68 v~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~-~~~~vi~l~v~~-e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~ 145 (206)
T 3sr0_A 68 IEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGL-KVDHVLLFEVPD-EVVIERLSGRRINPETGEVYHVKYNPPPPGV 145 (206)
T ss_dssp HHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTC-CCCEEEEEECCH-HHHHHHHHTEEECTTTCCEEETTTBCCCTTC
T ss_pred HHHhhccCCceEecCCchhHHHHHHHHhhHHHhcc-ccceeeecCCCH-HHHHHHHhCCccccCCCceeeeeccCCCCCc
Confidence 344445555577765333222 2221 2110 123578888876 8999999876
Q ss_pred -----CCCCHHHHHHHHHHHHHHh
Q psy9156 123 -----GTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 123 -----g~es~e~I~~RL~~a~~e~ 141 (177)
.+++++.|++||+...++.
T Consensus 146 ~l~~r~DD~~e~i~~Rl~~Y~~~t 169 (206)
T 3sr0_A 146 KVIQREDDKPEVIKKRLEVYREQT 169 (206)
T ss_dssp CCBCCGGGSHHHHHHHHHHHHHHT
T ss_pred eecccCCCCHHHHHHHHHHHHHHH
Confidence 3577899999999987664
No 58
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.97 E-value=3.2 Score=29.81 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=24.5
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETE-DSLRRRLDLARRDM 141 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~-e~I~~RL~~a~~e~ 141 (177)
..+||+.+| .+++.+|+.+|+++.. .+..+++..+.++.
T Consensus 96 ~~~i~l~~~-~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 96 AKVVYLHAD-PSVIKKRLRVRGDEYIEGKDIDSILELYREV 135 (173)
T ss_dssp EEEEEEECC-HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence 467888864 6999999998764332 23445555544443
No 59
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.94 E-value=3 Score=33.49 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=31.3
Q ss_pred eEEEEEcCCCHHHHHHHHhhcC---------------------------------CCCHHHHHHHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRG---------------------------------TETEDSLRRRLDLARRDM 141 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg---------------------------------~es~e~I~~RL~~a~~e~ 141 (177)
-.+|++..|. +++.+||.+|+ +++++.|++||+...++.
T Consensus 112 d~VI~Ldvp~-e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t 183 (230)
T 3gmt_A 112 DYVLEIDVPF-SEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQT 183 (230)
T ss_dssp SEEEEECCCH-HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCH-HHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHH
Confidence 3678888875 88999998873 457899999999987664
No 60
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.30 E-value=2.5 Score=30.96 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=37.0
Q ss_pred HHHHH--hCCCeEEEEe----cHH-H------HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhh--cCC---CCHHHHH
Q psy9156 70 VEAVI--NSGKTCVLDI----EVQ-G------VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRG--RGT---ETEDSLR 131 (177)
Q Consensus 70 i~~~~--~~gk~~il~i----d~~-G------~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~--Rg~---es~e~I~ 131 (177)
|...+ .+|+.+|++- ..+ | ...++... +. .+||+.+|....+++|+.. |++ .+.+.++
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~---~~-~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~ 151 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEIN---PS-VIFLLEADPKIILSRQKRDTTRNRNDYSDESVIL 151 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHC---CS-EEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHH
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhcC---CC-EEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHH
Confidence 45555 6888888884 222 2 33444433 33 5677777653445566888 875 2445443
Q ss_pred --HHHHHHHHH
Q psy9156 132 --RRLDLARRD 140 (177)
Q Consensus 132 --~RL~~a~~e 140 (177)
.++..+..+
T Consensus 152 ~~~~~~~~~~~ 162 (194)
T 1nks_A 152 ETINFARYAAT 162 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 344444433
No 61
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.75 E-value=5.3 Score=29.11 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=37.8
Q ss_pred CCCeEEEEecH---HHHHHHHHHcCCCCc-eEEEEEcCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHH
Q psy9156 76 SGKTCVLDIEV---QGVQQVKRAGGAMAG-AVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARR 139 (177)
Q Consensus 76 ~gk~~il~id~---~G~~~lk~~~~~~~~-~~~IfI~pps~~~L~~RL~~Rg~------es~e~I~~RL~~a~~ 139 (177)
.|..+|++--+ .....+......... .++||+.+| .+++.+|+.+|+. ++.+++.+|+....+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~ 154 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNV 154 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHH
Confidence 56778776422 223333322211012 357788775 5999999988853 337889999987543
No 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.44 E-value=1.7 Score=32.90 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=32.6
Q ss_pred HHHHhCCCeEEEEecHHHHHHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 71 EAVINSGKTCVLDIEVQGVQQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 71 ~~~~~~gk~~il~id~~G~~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
...+..|..+|++.... ....++.... .....+||+.+| .+++.+|+.+|+.
T Consensus 95 ~~~~~~g~~viid~~~~-~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 95 DARADAGVSTIITCSAL-KRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREG 147 (200)
T ss_dssp HHHHHTTCCEEEEECCC-CHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSC
T ss_pred HHHHhcCCCEEEEchhh-hHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhccc
Confidence 33456788888877332 1222222211 034578899976 6999999999975
No 63
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.45 E-value=4.8 Score=30.79 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.3
Q ss_pred EEEEEcCCCHHHHHHHHhhcC
Q psy9156 103 VYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg 123 (177)
.+||+..|. +++.+|+..|+
T Consensus 114 ~vi~L~~~~-e~~~~Rl~~R~ 133 (217)
T 3be4_A 114 SVIYFEIDD-SEIIERISGRC 133 (217)
T ss_dssp EEEEEECCH-HHHHHHHHTEE
T ss_pred EEEEEECCH-HHHHHHHHcCC
Confidence 678888864 89999998774
No 64
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.72 E-value=0.56 Score=34.81 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=38.6
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCC-ceeeecHHH-HHHHHhCCCeEEEE------ecHHHHHHHHHHcCCCCceEEEE
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAA-NLYGTSRAA-VEAVINSGKTCVLD------IEVQGVQQVKRAGGAMAGAVYVF 106 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G-~~YGt~~~~-i~~~~~~gk~~il~------id~~G~~~lk~~~~~~~~~~~If 106 (177)
+.|++.+++..........++....| .+|...... +........ +++. ++..-...++.. ..+||
T Consensus 31 ~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~vi~~gg~~~~~~~~~~~l~~~------~~vi~ 103 (185)
T 3trf_A 31 RILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDN-IILATGGGVVLDEKNRQQISET------GVVIY 103 (185)
T ss_dssp CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CEEECCTTGGGSHHHHHHHHHH------EEEEE
T ss_pred CCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCC-cEEecCCceecCHHHHHHHHhC------CcEEE
Confidence 56777777755543333222211112 233333333 333333333 4443 344333333322 37899
Q ss_pred EcCCCHHHHHHHH
Q psy9156 107 VKPPSIEELETRL 119 (177)
Q Consensus 107 I~pps~~~L~~RL 119 (177)
+.+| .+++.+|+
T Consensus 104 L~~~-~e~l~~Rl 115 (185)
T 3trf_A 104 LTAS-IDTQLKRI 115 (185)
T ss_dssp EECC-HHHHHHHH
T ss_pred EECC-HHHHHHHH
Confidence 9986 69999999
No 65
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.64 E-value=3.2 Score=30.91 Aligned_cols=68 Identities=13% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCeEEEE--------------ecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHH--HHH
Q psy9156 68 AAVEAVINSGKTCVLD--------------IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETED--SLR 131 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~--------------id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e--~I~ 131 (177)
+.+...+.+|..+|+| ++.+....+..... .++ .+||+..|. +++.+ +|+++..+ ++.
T Consensus 77 ~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~-~~d-~vi~l~~~~-e~~~~---~R~~d~~e~~~~~ 150 (204)
T 2v54_A 77 SFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLP-KPD-LVIFLESGS-KEINR---NVGEEIYEDVTFQ 150 (204)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSB-CCS-EEEEECCCH-HHHTT---CCSSSTTCCSHHH
T ss_pred HHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCC-CCC-EEEEEeCCH-HHHHh---hcCcccccHHHHH
Confidence 4566677889888877 23333333322211 123 567787764 55554 56544333 788
Q ss_pred HHHHHHHHHh
Q psy9156 132 RRLDLARRDM 141 (177)
Q Consensus 132 ~RL~~a~~e~ 141 (177)
+|+..+-.+.
T Consensus 151 ~rl~~~y~~~ 160 (204)
T 2v54_A 151 QKVLQEYKKM 160 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 66
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.30 E-value=7.7 Score=29.40 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=25.9
Q ss_pred EEEEEcCCCHHH----HHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 103 VYVFVKPPSIEE----LETRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 103 ~~IfI~pps~~~----L~~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
+.+++.||+.+. +.+||..|.+++++.+++|++.+.++.
T Consensus 133 ~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~ 175 (214)
T 1e4v_A 133 YHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMT 175 (214)
T ss_dssp EETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 445566665433 234556677778889999998876654
No 67
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=79.11 E-value=2.7 Score=30.94 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCCce-eee--cHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCC
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAANL-YGT--SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPS 111 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~-YGt--~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps 111 (177)
+.|++-+++-... .-|.++.+..... +-. -.+.+..++..|..++ + ..+...+.... ...+||+.+|
T Consensus 37 ~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv-~--~~~~~~~~~~~----~~~vi~L~~~- 106 (180)
T 3iij_A 37 LKYINVGDLAREE--QLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIV-D--YHGCDFFPERW----FHIVFVLRTD- 106 (180)
T ss_dssp CEEEEHHHHHHHH--TCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEE-E--CSCCTTSCGGG----CSEEEEEECC-
T ss_pred CeEEEHHHHHhhc--chhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEE-E--echhhhcchhc----CCEEEEEECC-
Confidence 4556555544332 4454554322222 221 2345666677776543 3 22212121111 3478888875
Q ss_pred HHHHHHHHhhcCC
Q psy9156 112 IEELETRLRGRGT 124 (177)
Q Consensus 112 ~~~L~~RL~~Rg~ 124 (177)
.+++.+|+.+|+.
T Consensus 107 ~e~l~~R~~~r~~ 119 (180)
T 3iij_A 107 TNVLYERLETRGY 119 (180)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 5999999999985
No 68
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=78.35 E-value=9.3 Score=28.98 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.3
Q ss_pred EEEEEcCCCHHHHHHHHhhc
Q psy9156 103 VYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~R 122 (177)
++||+..| .+++.+|+.+|
T Consensus 114 ~vi~L~~~-~e~~~~R~~~r 132 (220)
T 1aky_A 114 KAIELKVD-DELLVARITGR 132 (220)
T ss_dssp EEEEEECC-HHHHHHHHHTE
T ss_pred EEEEEECC-HHHHHHHHhCC
Confidence 68888876 48888998766
No 69
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.99 E-value=1.8 Score=35.10 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=27.6
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
..+|||.+| .+++.+|+.+|+..+.+++.+|+...
T Consensus 201 d~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q 235 (281)
T 2f6r_A 201 HEVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQ 235 (281)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTS
T ss_pred CEEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHc
Confidence 468999987 48999999988545788888888664
No 70
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.42 E-value=1.9 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=27.1
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
.+|||.+| .+++.+|+.+|+..+.+++.+|+..
T Consensus 128 ~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~ 160 (218)
T 1vht_A 128 RVLVVDVS-PETQLKRTMQRDDVTREHVEQILAA 160 (218)
T ss_dssp EEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 68999975 5999999999965678888888765
No 71
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.31 E-value=2.2 Score=32.17 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=24.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
-.+|||.+| .+++.+|+.+|...+.+++.+|+..
T Consensus 125 d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~ 158 (206)
T 1jjv_A 125 DRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNS 158 (206)
T ss_dssp SEEEEEECC-HHHHHHHHC-----CHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 368899886 5999999999954578889998875
No 72
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=76.69 E-value=1.1 Score=35.62 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=26.5
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
.+|+|.+|. ++..+||.+|...+.+++.+|++.
T Consensus 134 ~vi~V~ap~-e~r~~Rl~~Rdg~s~eea~~ri~~ 166 (210)
T 4i1u_A 134 RVLVVDCPV-DTQIARVMQRNGFTREQVEAIIAR 166 (210)
T ss_dssp EEEEEECCH-HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred eEEEEECCH-HHHHHHHHhcCCCCHHHHHHHHHH
Confidence 567888764 888899999955689999999864
No 73
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.14 E-value=21 Score=25.80 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCeEEEEecH---HHHHHHHHHcCCCCc-eEEEEEcCCCHHHHHHHHhhcC------CCCHHHHHHHHHHHHHH
Q psy9156 76 SGKTCVLDIEV---QGVQQVKRAGGAMAG-AVYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRD 140 (177)
Q Consensus 76 ~gk~~il~id~---~G~~~lk~~~~~~~~-~~~IfI~pps~~~L~~RL~~Rg------~es~e~I~~RL~~a~~e 140 (177)
.|..+|++--+ .-...+.+....... ..+||+..| .+++.+|+.+|+ .++.+.+++|+......
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 47778877322 212223332211012 267888876 488889987663 23567788888665444
No 74
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=75.03 E-value=3.2 Score=30.44 Aligned_cols=37 Identities=38% Similarity=0.596 Sum_probs=27.9
Q ss_pred EEEEEcCCCHHHHHHHHhhcC------CCCHHHHHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRD 140 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg------~es~e~I~~RL~~a~~e 140 (177)
.+||+..| .+++.+|+.+|+ .++.+.+++|+.....+
T Consensus 108 ~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~ 150 (186)
T 3cm0_A 108 GVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRRLEVYREK 150 (186)
T ss_dssp EEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHH
Confidence 67888876 599999998873 25678899998765443
No 75
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=70.81 E-value=1.5 Score=33.28 Aligned_cols=94 Identities=9% Similarity=0.028 Sum_probs=41.1
Q ss_pred CCcceEe--eCHHHHHHHH----HcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEE
Q psy9156 31 DGKAYHF--VTRADMEERI----AAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVY 104 (177)
Q Consensus 31 ~G~dY~F--vs~~eF~~~i----~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~ 104 (177)
.|..|++ ++.+.|.+.+ +.|+.+.+-.|... +++.... ...+..+.++|++...-....+... + ..+
T Consensus 75 ~~~~~~~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~~~~----~-d~~ 147 (201)
T 1rz3_A 75 EWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEWRPF----F-DFV 147 (201)
T ss_dssp HHHHHHHTSSCHHHHHHHTGGGTTTCSEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTTGGG----C-SEE
T ss_pred CccCCCccccCHHHHHHHHHHHHhcCCccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHHHhh----c-CEE
Confidence 3444433 5666775553 45667777666543 2222110 0112357788887654321122111 2 378
Q ss_pred EEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 105 VFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 105 IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
|||.+|. ++..+|+.+|+ +++.+|+..
T Consensus 148 i~v~~~~-~~~~~R~~~R~----~~~~~~~~~ 174 (201)
T 1rz3_A 148 VYLDCPR-EIRFARENDQV----KQNIQKFIN 174 (201)
T ss_dssp EEECCC-------------------CHHHHHH
T ss_pred EEEeCCH-HHHHHHHhcCC----HHHHHHHHh
Confidence 9999986 88889999997 455666643
No 76
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.24 E-value=15 Score=28.89 Aligned_cols=63 Identities=10% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEecH--HH-HHHHHH---HcCCCCceEEEEEcCCCHHHHHHHHhhcCCC-CHHHHHHH
Q psy9156 67 RAAVEAVINSGKTCVLDIEV--QG-VQQVKR---AGGAMAGAVYVFVKPPSIEELETRLRGRGTE-TEDSLRRR 133 (177)
Q Consensus 67 ~~~i~~~~~~gk~~il~id~--~G-~~~lk~---~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e-s~e~I~~R 133 (177)
...+...++. ..+|++-.. ++ ...+.. ..+ ...++||+.+| .+++.+|+.+|+.. +.+.+++.
T Consensus 63 ~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~--~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~ 132 (260)
T 3a4m_A 63 YRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYN--KNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKM 132 (260)
T ss_dssp HHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTT--CEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHH
T ss_pred HHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcC--CCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHH
Confidence 3456666666 677775321 22 222332 222 34678888875 69999999999853 34444443
No 77
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=69.77 E-value=3.8 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=26.1
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
-.+|||.+| .+.+.+|+.+|+..+.+++..|+..
T Consensus 126 d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~ 159 (203)
T 1uf9_A 126 HGTLLVAAP-LEERVRRVMARSGLSREEVLARERA 159 (203)
T ss_dssp SEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTT
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 378999976 5999999999955566677777754
No 78
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=69.37 E-value=7.3 Score=29.03 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHhCCCeEEEEecHHH------HH-----HHHHH-cCC-CCceEEEEEcCCCHHHHHHHHhhc-CCCCHHHHHHHH
Q psy9156 69 AVEAVINSGKTCVLDIEVQG------VQ-----QVKRA-GGA-MAGAVYVFVKPPSIEELETRLRGR-GTETEDSLRRRL 134 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~~G------~~-----~lk~~-~~~-~~~~~~IfI~pps~~~L~~RL~~R-g~es~e~I~~RL 134 (177)
.+...+.+|..+++|-.+.+ .. .+... ... ...-.+||+.+|. +++.+|+.+| ++.+.+++.+|+
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~r~~r~~~~~~~~~~ 164 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPP-NYAQNRSDYGEEIYEKVETQKKI 164 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCT-TGGGGSTTTTSSTTCSHHHHHHH
T ss_pred HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCH-HHHHHhhccCcccccHHHHHHHH
Confidence 46666778888888755532 11 11110 000 0123578888765 7888898765 222346777887
Q ss_pred HHHHHHh
Q psy9156 135 DLARRDM 141 (177)
Q Consensus 135 ~~a~~e~ 141 (177)
..+-.+.
T Consensus 165 ~~~~~~~ 171 (212)
T 2wwf_A 165 YETYKHF 171 (212)
T ss_dssp HHHGGGG
T ss_pred HHHHHHH
Confidence 6654443
No 79
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=68.92 E-value=14 Score=28.15 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=16.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 119 LRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 119 L~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
|.+|++++.+.+++|+..+.++.
T Consensus 158 l~~r~~~~~e~~~~r~~~y~~~~ 180 (227)
T 1zd8_A 158 LIQREDDKPETVIKRLKAYEDQT 180 (227)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Confidence 33344567789999998876654
No 80
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=68.69 E-value=12 Score=28.65 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=34.1
Q ss_pred CCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 76 SGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 76 ~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
+...||++--. |---++ .. ...+.|||.+| .+++.+|+.++..-+.+++.++|..
T Consensus 97 ~~~~~Vi~Gr~-g~~vl~-~~---~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~ 151 (201)
T 3fdi_A 97 EKESFVIVGRC-AEEILS-DN---PNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKK 151 (201)
T ss_dssp SCCCEEEESTT-HHHHTT-TC---TTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCEEEEECC-cchhcC-CC---CCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44467765432 332232 22 45899999985 6888888877644566666666643
No 81
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=68.23 E-value=18 Score=28.06 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=42.0
Q ss_pred HHHHHHhCCCeEEEEe---------------cHHHHHHHHHHc-CCCCceEEEEEcCCCHHHHHHHHhhcCCC-C----H
Q psy9156 69 AVEAVINSGKTCVLDI---------------EVQGVQQVKRAG-GAMAGAVYVFVKPPSIEELETRLRGRGTE-T----E 127 (177)
Q Consensus 69 ~i~~~~~~gk~~il~i---------------d~~G~~~lk~~~-~~~~~~~~IfI~pps~~~L~~RL~~Rg~e-s----~ 127 (177)
.|...+++|++||+|= +.+-+..+.... +....-.+||+..| .++..+|+.+||.. . .
T Consensus 85 ~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~Ri~~R~~~dr~E~~~ 163 (213)
T 4tmk_A 85 VIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRARARGELDRIEQES 163 (213)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHHSSCCTTTTSC
T ss_pred HHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCccchhhhH
Confidence 4666788898888872 333344443321 11012356777775 58999999998741 1 1
Q ss_pred HHHHHHHHHHHHHh
Q psy9156 128 DSLRRRLDLARRDM 141 (177)
Q Consensus 128 e~I~~RL~~a~~e~ 141 (177)
.+..+|+..+-.++
T Consensus 164 ~~f~~rv~~~y~~l 177 (213)
T 4tmk_A 164 FDFFNRTRARYLEL 177 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666555554
No 82
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=68.04 E-value=31 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCeEEEEe---------------cHHHHHHHHHHcCCCCc-eEEEEEcCCCHHHHHHHHhhcCC
Q psy9156 68 AAVEAVINSGKTCVLDI---------------EVQGVQQVKRAGGAMAG-AVYVFVKPPSIEELETRLRGRGT 124 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---------------d~~G~~~lk~~~~~~~~-~~~IfI~pps~~~L~~RL~~Rg~ 124 (177)
..|...+++|++||+|= +.+-+..+....-..+. -++||+..| .++..+|+.+|+.
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSR 147 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC---
T ss_pred HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCC
Confidence 34566778888888763 23333444332100022 257788775 5899999998875
No 83
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=67.50 E-value=6.8 Score=29.07 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=26.7
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
-++|||.+| .+++.+|+.+|...+.+++.+++..
T Consensus 137 d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~ 170 (208)
T 3ake_A 137 AHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLR 170 (208)
T ss_dssp SEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHH
T ss_pred cEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHH
Confidence 478999986 5888899988876677788877763
No 84
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.02 E-value=5.7 Score=29.64 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.6
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a 137 (177)
..+||+.+| .+++.+|+.+|| .+.+++.+|+...
T Consensus 125 ~~~i~l~~~-~e~~~~Rl~~R~-~~~~~~~~~~~~~ 158 (204)
T 2if2_A 125 DKLIVVYAP-YEVCKERAIKRG-MSEEDFERRWKKQ 158 (204)
T ss_dssp SEEEEECCC-HHHHHHHHHHTC-CCHHHHHHHHTTS
T ss_pred CEEEEEECC-HHHHHHHHHHcC-CCHHHHHHHHHhC
Confidence 368899876 599999999997 4677788877653
No 85
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=65.41 E-value=18 Score=28.40 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHhCCCeEEEEecHHHHHHHH--HHcCCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy9156 70 VEAVINSGKTCVLDIEVQGVQQVK--RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136 (177)
Q Consensus 70 i~~~~~~gk~~il~id~~G~~~lk--~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL~~ 136 (177)
+.++.++| .||++-- -|---+. +.. .+.+.|||.+| .+.+.+|+.++..-+.++..++|..
T Consensus 109 i~~la~~~-~~Vi~Gr-ggg~vl~~~~~~---~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~ 171 (223)
T 3hdt_A 109 MRELAESE-PCIFVGR-AAGYVLDQDEDI---ERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKK 171 (223)
T ss_dssp HHHHHHHS-CEEEEST-THHHHHHHCTTC---CEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhCC-CEEEEeC-CcchhcccccCC---CCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44555544 5666533 2333332 222 45799999986 6999999876643466665555543
No 86
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=64.90 E-value=38 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=23.3
Q ss_pred eEEEEEcCCCHHHHHHHHh-hc------CCCCHHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLR-GR------GTETEDSLRRRLDLA 137 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~-~R------g~es~e~I~~RL~~a 137 (177)
..+||+.+| .+++.+|+. .| ...+.+++..++...
T Consensus 119 ~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~ 160 (199)
T 3vaa_A 119 GKTVFLNVH-PDVLFRRLRIAKQQRPILQGKEDDELMDFIIQA 160 (199)
T ss_dssp SEEEEEECC-HHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHH
Confidence 468888876 599999998 33 134555665555544
No 87
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=59.42 E-value=23 Score=30.20 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=38.6
Q ss_pred CCeEEEEe-----cHHHHHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhc----CC-CCHHHHHHHHH
Q psy9156 77 GKTCVLDI-----EVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR----GT-ETEDSLRRRLD 135 (177)
Q Consensus 77 gk~~il~i-----d~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~R----g~-es~e~I~~RL~ 135 (177)
..++|++. +..+...++..+......++|||.+|. ++.++|+.+| |. ++.+++..|+.
T Consensus 260 ~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~-ev~~~Rli~R~~~~Gl~~s~eea~~r~~ 327 (359)
T 2ga8_A 260 TRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDY-EATEERVAKRHLQSGLVTTIAEGREKFR 327 (359)
T ss_dssp CCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCH-HHHHHHHHHHHHHTTSCSSHHHHHHHHH
T ss_pred CCEEEEEeehhhccccchhhhhhccccccceEEEEEECCH-HHHHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 56777777 224566676666100012789999875 8888899888 54 27888888776
No 88
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=58.41 E-value=3.7 Score=30.80 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred ceeeecHHHHHHHHhCCCeEEEEecH------HHH-----------HHHHHHc----CCCCceEEEEEcCCCHHHHHHHH
Q psy9156 61 NLYGTSRAAVEAVINSGKTCVLDIEV------QGV-----------QQVKRAG----GAMAGAVYVFVKPPSIEELETRL 119 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~gk~~il~id~------~G~-----------~~lk~~~----~~~~~~~~IfI~pps~~~L~~RL 119 (177)
+.|+. .+.+...+..|+++|+|-.+ ++. ..+.... +-...-.+||+..| .+++.+|+
T Consensus 73 ~r~~~-~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~R~ 150 (214)
T 1gtv_A 73 DRAGA-VHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVS-AELAGERS 150 (214)
T ss_dssp HHHEE-HHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEE-HHHHHHHH
T ss_pred HHhhh-HHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCC-HHHHHHHH
Confidence 34555 56677777788888888765 332 1122220 10011246667665 48999999
Q ss_pred hhcCC-------CC---HHHHHHHHHHHHHHhh
Q psy9156 120 RGRGT-------ET---EDSLRRRLDLARRDMS 142 (177)
Q Consensus 120 ~~Rg~-------es---~e~I~~RL~~a~~e~~ 142 (177)
.+|+. +. ..++.+|+.....++.
T Consensus 151 ~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~ 183 (214)
T 1gtv_A 151 RGRAQRDPGRARDNYERDAELQQRTGAVYAELA 183 (214)
T ss_dssp HHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HcccccccccccccccccHHHHHHHHHHHHHHH
Confidence 98853 11 2577788876665554
No 89
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=58.30 E-value=13 Score=27.54 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRL 134 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~e~I~~RL 134 (177)
..+||+.+| .+++.+||.+|+. +...+..++
T Consensus 102 ~~vi~l~~~-~e~~~~Rl~~R~~-~~~~~~~~~ 132 (184)
T 1y63_A 102 HMVVVLHTS-TEVLFERLTKRQY-SEAKRAENM 132 (184)
T ss_dssp SEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHhCCC-ChhhhHhhH
Confidence 367888875 5999999999974 455555554
No 90
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=58.06 E-value=4.6 Score=36.24 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCcceEeeCHHHHHHHHHcCC-eEEEEEeCCceeeecHHHHHHHHhCCCeEEEEec---HHHHHHHHHHcCCCCceEEEE
Q psy9156 31 DGKAYHFVTRADMEERIAAGE-FLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIE---VQGVQQVKRAGGAMAGAVYVF 106 (177)
Q Consensus 31 ~G~dY~Fvs~~eF~~~i~~g~-FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id---~~G~~~lk~~~~~~~~~~~If 106 (177)
.|.+++|++.+.+.+.+..+. |-. .+... .+..-...+..+++.|..+|++.. ..+...+++.... .+.++||
T Consensus 399 ~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~-~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~-~d~~vV~ 475 (546)
T 2gks_A 399 RGRKVTLLDGDVVRTHLSRGLGFSK-EDRIT-NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEE-GKFIEVF 475 (546)
T ss_dssp TTCCEEEECHHHHHHHTCTTCCSSH-HHHHH-HHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCT-TCEEEEE
T ss_pred cCCeEEEECchHhhhhhcccccccH-HHHHH-HHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhc-CCEEEEE
Confidence 456788889888877653221 100 00000 011111234556788998888742 1222334433321 2358899
Q ss_pred EcCCCHHHHHHHHh
Q psy9156 107 VKPPSIEELETRLR 120 (177)
Q Consensus 107 I~pps~~~L~~RL~ 120 (177)
|.+| .+++.+|+.
T Consensus 476 L~~~-~e~~~~Rl~ 488 (546)
T 2gks_A 476 VDAP-VEVCEERDV 488 (546)
T ss_dssp EECC-GGGHHHHCC
T ss_pred EeCC-HHHHHHHhh
Confidence 9986 589999986
No 91
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=56.74 E-value=52 Score=24.81 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCeEEEEecHHH---------------HHHHHHHc-CCCCceEEEEEcCCCHHHHHHHHhhcCCCCHHHHH
Q psy9156 68 AAVEAVINSGKTCVLDIEVQG---------------VQQVKRAG-GAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLR 131 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~id~~G---------------~~~lk~~~-~~~~~~~~IfI~pps~~~L~~RL~~Rg~es~e~I~ 131 (177)
..|...+++|++||+|=-... +..+.... +....-.+||+..| .++..+|..+|.+....+..
T Consensus 73 ~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~ef~ 151 (197)
T 3hjn_A 73 TEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKREFL 151 (197)
T ss_dssp HHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCHHHH
T ss_pred HHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccHHHH
Confidence 457777889998887742222 22222211 11113456777765 47777787777664445677
Q ss_pred HHHHHHHHHh
Q psy9156 132 RRLDLARRDM 141 (177)
Q Consensus 132 ~RL~~a~~e~ 141 (177)
+|+..+-.++
T Consensus 152 ~rv~~~y~~l 161 (197)
T 3hjn_A 152 ERVREGYLVL 161 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665555
No 92
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=56.30 E-value=62 Score=28.51 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=29.6
Q ss_pred hCCCeEEEEecHHHHH------HHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC
Q psy9156 75 NSGKTCVLDIEVQGVQ------QVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 75 ~~gk~~il~id~~G~~------~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg 123 (177)
..|..+|+|....+.. .+.+..+ ...++|.+..|+.+.+++|+..|.
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g--~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKEND--FKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHT--CEEEEEEEECCCHHHHHHHHHHHT
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcC--CeEEEEEEeCChHHHHHHHHHhhh
Confidence 5688888775332221 1122222 456778888888899999997665
No 93
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=55.32 E-value=9.5 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.0
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHH----HHHHHHHHHHHHh
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETED----SLRRRLDLARRDM 141 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e----~I~~RL~~a~~e~ 141 (177)
.+||+..| .+++.+|+.+||+..+. +..+|+...-.++
T Consensus 149 ~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~ 190 (230)
T 2vp4_A 149 LIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDW 190 (230)
T ss_dssp EEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHH
Confidence 57888876 48999999888753221 5778887766555
No 94
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=55.17 E-value=16 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHhCCCeEEEEecHHHHH-------HHHHHcCCCCceEEEEEcCCCHHHHHHHHhhc
Q psy9156 69 AVEAVINSGKTCVLDIEVQGVQ-------QVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 69 ~i~~~~~~gk~~il~id~~G~~-------~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~R 122 (177)
-++..+..|..+|++..+.+.. .+++.. ..+.+|++..| .+++.+|+.+|
T Consensus 101 ~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g---~~v~lv~l~~~-~e~~~~R~~~R 157 (253)
T 2p5t_B 101 LVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKG---YEVQLALIATK-PELSYLSTLIR 157 (253)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTT---CEEEEEEECCC-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCC---CcEEEEEEeCC-HHHHHHHHHHH
Confidence 3445667788899987654322 233332 45556677764 68888887766
No 95
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=53.80 E-value=15 Score=25.04 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=41.6
Q ss_pred eEeeCHHHHHHHHHc--CC--eEEEEEe---CCceeeecHHHHHHHH----hC--CCeEEEEecH-------HHHHHHHH
Q psy9156 35 YHFVTRADMEERIAA--GE--FLEHAEF---AANLYGTSRAAVEAVI----NS--GKTCVLDIEV-------QGVQQVKR 94 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~--g~--FlE~~~~---~G~~YGt~~~~i~~~~----~~--gk~~il~id~-------~G~~~lk~ 94 (177)
....+.++|++.+.+ |. ++.++.- .|-.++-+...+...+ ++ +...++.+|. +....+.+
T Consensus 7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~ 86 (123)
T 1wou_A 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 86 (123)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH
Confidence 456799999999986 55 3333322 2222333333333333 22 4677777776 34455666
Q ss_pred HcCCCCceEEEEEcC
Q psy9156 95 AGGAMAGAVYVFVKP 109 (177)
Q Consensus 95 ~~~~~~~~~~IfI~p 109 (177)
.++-.--|.++++..
T Consensus 87 ~~~i~~~Pt~~~~~~ 101 (123)
T 1wou_A 87 NLKVTAVPTLLKYGT 101 (123)
T ss_dssp HHCCCSSSEEEETTS
T ss_pred HCCCCeeCEEEEEcC
Confidence 565323577777764
No 96
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.69 E-value=12 Score=27.52 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCCCHH----HHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTETED----SLRRRLDLARR 139 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~es~e----~I~~RL~~a~~ 139 (177)
.+||+.+| .+++.+|+.+|++.... +..+++.....
T Consensus 127 ~vi~L~~~-~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~ 166 (205)
T 2jaq_A 127 IVIYLRVS-TKTAISRIKKRGRSEELLIGEEYWETLNKNYE 166 (205)
T ss_dssp EEEEEECC-HHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHHHHcCChhhhcCcHHHHHHHHHHHH
Confidence 68999986 59999999999752221 34455555443
No 97
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=52.98 E-value=23 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.0
Q ss_pred eEEEEEcCCCHHHHHHHHhhc
Q psy9156 102 AVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~R 122 (177)
..+||+..| .+++.+|+.+|
T Consensus 124 d~vi~L~~~-~e~~~~Rl~~R 143 (233)
T 1ak2_A 124 DSVIEFSIP-DSLLIRRITGR 143 (233)
T ss_dssp CEEEEEECC-HHHHHHHHHTC
T ss_pred CEEEEEECC-HHHHHHHHHcC
Confidence 367888876 48999999877
No 98
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=51.88 E-value=18 Score=27.74 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=24.6
Q ss_pred eEEEEEcCCCHHHHHHHH----hhcC-CCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRL----RGRG-TETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL----~~Rg-~es~e~I~~RL~~ 136 (177)
.++|||.+|. +++.+|+ ..|+ ..+.+++.+++..
T Consensus 154 d~vi~L~a~~-e~~~~R~~~~~~~R~~~~~~e~~~~~i~~ 192 (236)
T 1q3t_A 154 ELKIFLVASV-DERAERRYKENIAKGIETDLETLKKEIAA 192 (236)
T ss_dssp SEEEEEECCH-HHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CEEEEEECCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4689999864 7777776 5777 3467788877753
No 99
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=45.22 E-value=0.49 Score=36.20 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHhhhCCCceeeeeeeecCCCCCCCCC--Ccc-eEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC
Q psy9156 2 YSILFFQDYPDRFGFSVSHTTRGPRPGEVD--GKA-YHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 2 l~~~Ll~~~p~~f~~~is~TTR~~R~gE~~--G~d-Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~ 76 (177)
|++.|+...+. ..+.+..+++.+++.++| |.| |+|++ .-+.+.... ...+|..+.+ .||++..+++.++..
T Consensus 22 l~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~i~-~~~~~~~~~~-~~~~~~~~L~~ll~r 95 (174)
T 1np6_A 22 LLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTIVA-SQQRWALMTE-TPDEEELDLQFLASR 95 (174)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEEEE-CSSEEEEEEE-CSSSCCCCHHHHHHH
T ss_pred HHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceeecc-cchhheeeee-ccCCchhhHHHHHHh
Confidence 45566655432 345677889988877765 666 55543 111111001 1244555443 588887888887754
No 100
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=43.83 E-value=30 Score=25.80 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=24.1
Q ss_pred eEEEEEcCCCHHHHHHHHh----hcCC-CCHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLR----GRGT-ETEDSLRRRLD 135 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~----~Rg~-es~e~I~~RL~ 135 (177)
.++|||.+| .+++.+|+. .||. .+.+++.+++.
T Consensus 137 ~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~ 174 (219)
T 2h92_A 137 DLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIE 174 (219)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHH
Confidence 468999986 588888853 5664 36788888884
No 101
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=43.64 E-value=19 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=32.9
Q ss_pred CCeEEEEecHHH-HHHHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcC----CCCHHHHHHHHHH
Q psy9156 77 GKTCVLDIEVQG-VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG----TETEDSLRRRLDL 136 (177)
Q Consensus 77 gk~~il~id~~G-~~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg----~es~e~I~~RL~~ 136 (177)
...+|++.-+-. -..+.... + .+|||.+| .+++.+|+..|. ..+.+++.+++..
T Consensus 131 ~~~vIveG~~~~~~~~~~~~~----d-~vi~l~~~-~e~~~~R~~~R~~~~rg~~~e~i~~~~~~ 189 (252)
T 1uj2_A 131 ADVVLFEGILAFYSQEVRDLF----Q-MKLFVDTD-ADTRLSRRVLRDISERGRDLEQILSQYIT 189 (252)
T ss_dssp CSEEEEECTTTTSSHHHHHHC----S-EEEEEECC-HHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CcEEEEeeeccccCHHHHHhc----C-eeEEEeCC-HHHHHHHHHHHHHhhhCCCHHHHHHHHHH
Confidence 346677653211 12333333 3 67999986 488888887773 2477888777764
No 102
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=42.23 E-value=29 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.5
Q ss_pred eEEEEEcCCCHHHHHHHHhhcCCCCH----HHHHHHHHHHHHHh
Q psy9156 102 AVYVFVKPPSIEELETRLRGRGTETE----DSLRRRLDLARRDM 141 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg~es~----e~I~~RL~~a~~e~ 141 (177)
-.+||+.+| .+++.+|+.+|++..+ .+..+++..+-.++
T Consensus 151 d~~i~l~~~-~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~ 193 (241)
T 2ocp_A 151 HGFIYLQAS-PQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAW 193 (241)
T ss_dssp CEEEEEECC-HHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHH
Confidence 457888876 5999999999875321 34455665554443
No 103
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=41.85 E-value=24 Score=28.52 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=54.5
Q ss_pred eeeecCCCCCCCCCC-cceEeeCHHHH-----H---HHHHcCCeEEEEEe-C----CceeeecHHHHHH--HH-hCCCeE
Q psy9156 18 VSHTTRGPRPGEVDG-KAYHFVTRADM-----E---ERIAAGEFLEHAEF-A----ANLYGTSRAAVEA--VI-NSGKTC 80 (177)
Q Consensus 18 is~TTR~~R~gE~~G-~dY~Fvs~~eF-----~---~~i~~g~FlE~~~~-~----G~~YGt~~~~i~~--~~-~~gk~~ 80 (177)
+..+++.+++++.+| .+|.+.+++.| . ..+..|+.+++..| + +..|+.....+.. .+ .....+
T Consensus 49 ~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vv 128 (290)
T 1a7j_A 49 RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLL 128 (290)
T ss_dssp HHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEE
T ss_pred HHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEE
Confidence 333444444444554 45555333332 2 23455677777665 2 3456655433210 11 223445
Q ss_pred EEEecHHHH-----HHHHHHcCCCCceEEEEEcCCCHHHHHHHHhh----cCCCCHHHHHHHHHH
Q psy9156 81 VLDIEVQGV-----QQVKRAGGAMAGAVYVFVKPPSIEELETRLRG----RGTETEDSLRRRLDL 136 (177)
Q Consensus 81 il~id~~G~-----~~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~----Rg~es~e~I~~RL~~ 136 (177)
|++ .+.+. ..+... . -..|||.||....+++|+.. ||...++.++....+
T Consensus 129 IvE-G~~~~~~~~~~~v~~~----~-D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r 187 (290)
T 1a7j_A 129 FYE-GLHGAVVNSEVNIAGL----A-DLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR 187 (290)
T ss_dssp EEE-ESCTTCBCSSCBCGGG----C-SEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH
T ss_pred EEE-ecccccccchHhHHHh----C-CEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh
Confidence 554 23332 123222 2 37899999986677777643 476444444444444
No 104
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.54 E-value=86 Score=22.62 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHhCCCeEEEEe--cHHHHHHHHHH---cCCCCceEEEEEcCCCHHHHHHHHhhcCCC
Q psy9156 72 AVINSGKTCVLDI--EVQGVQQVKRA---GGAMAGAVYVFVKPPSIEELETRLRGRGTE 125 (177)
Q Consensus 72 ~~~~~gk~~il~i--d~~G~~~lk~~---~~~~~~~~~IfI~pps~~~L~~RL~~Rg~e 125 (177)
.....|..++++. .....+.+++. .+......+|++. +|.+.|.+|+..|..+
T Consensus 68 ~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 68 NFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW-TNREELLRRDALRKKD 125 (189)
T ss_dssp HHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHHHHHHTTTSCC-
T ss_pred HHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHHHHHHHHhcccc
Confidence 3445677777775 33333444433 1111134445555 5789999999999753
No 105
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=36.89 E-value=51 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.8
Q ss_pred eEEEEEcCCCHHHHHHHHhhcC
Q psy9156 102 AVYVFVKPPSIEELETRLRGRG 123 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~Rg 123 (177)
..+||+.+| .+++.+|+.+|+
T Consensus 94 ~~~i~l~~~-~e~~~~R~~~r~ 114 (168)
T 2pt5_A 94 GTTVFIDIP-FEVFLERCKDSK 114 (168)
T ss_dssp SEEEEEECC-HHHHHHHCBCTT
T ss_pred CEEEEEECC-HHHHHHHHhCCC
Confidence 378899886 599999998864
No 106
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=35.20 E-value=78 Score=22.56 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=49.0
Q ss_pred CcceE-eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCC
Q psy9156 32 GKAYH-FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPP 110 (177)
Q Consensus 32 G~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pp 110 (177)
.+.+. +++.+++.....+..++-.... ..-+|++ +-+++..|+++|. .+..|...+-... ...+ ++ +.
T Consensus 79 ~v~~~g~~~~~e~~~~~~~adi~v~ps~-~e~~~~~---~~Eama~G~PvI~-~~~~~~~e~i~~~---~~g~--~~-~~ 147 (177)
T 2f9f_A 79 NVKFLGSVSEEELIDLYSRCKGLLCTAK-DEDFGLT---PIEAMASGKPVIA-VNEGGFKETVINE---KTGY--LV-NA 147 (177)
T ss_dssp TEEEEESCCHHHHHHHHHHCSEEEECCS-SCCSCHH---HHHHHHTTCCEEE-ESSHHHHHHCCBT---TTEE--EE-CS
T ss_pred cEEEeCCCCHHHHHHHHHhCCEEEeCCC-cCCCChH---HHHHHHcCCcEEE-eCCCCHHHHhcCC---CccE--Ee-CC
Confidence 34444 7899999999998888776333 2223433 5677889998776 4555555543332 2333 33 77
Q ss_pred CHHHHHHHHhh
Q psy9156 111 SIEELETRLRG 121 (177)
Q Consensus 111 s~~~L~~RL~~ 121 (177)
+.+.|.+.|..
T Consensus 148 d~~~l~~~i~~ 158 (177)
T 2f9f_A 148 DVNEIIDAMKK 158 (177)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888775543
No 107
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=33.81 E-value=1.2e+02 Score=21.19 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred EEEEEcCCCHHHHHHHHh--hc-C-C--CCHHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLR--GR-G-T--ETEDSLRRRLDLA 137 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~--~R-g-~--es~e~I~~RL~~a 137 (177)
.+|||.+| .+++.+|+. .| + + ...++..+++...
T Consensus 96 ~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~ 135 (173)
T 1e6c_A 96 TVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAV 135 (173)
T ss_dssp EEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHH
T ss_pred eEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHH
Confidence 78899986 589999998 77 2 1 2224445555544
No 108
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=33.56 E-value=45 Score=22.85 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHH
Q psy9156 100 AGAVYVFVKPPSIEELETRLRG---RGTETEDSLRRRLDLARR 139 (177)
Q Consensus 100 ~~~~~IfI~pps~~~L~~RL~~---Rg~es~e~I~~RL~~a~~ 139 (177)
-.++=|.+.|||.+.-..++.. +.+-|.++|++.|..|++
T Consensus 14 GqafEvILkpps~~~~~~~~~s~Pkkk~~SleeIqkKLeAAeE 56 (87)
T 4f6r_C 14 GQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEE 56 (87)
T ss_dssp EEEEEEEEECCCC---------------CTHHHHHHHHHHHHH
T ss_pred CcceEEEecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3678888999996543333222 234689999999999843
No 109
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=32.48 E-value=47 Score=23.58 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.7
Q ss_pred eEEEEEcCCCHHHHHHHHhhc
Q psy9156 102 AVYVFVKPPSIEELETRLRGR 122 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~R 122 (177)
..+|||..| .+++.+|+.+|
T Consensus 98 ~~vi~l~~~-~e~~~~Rl~~r 117 (168)
T 1zuh_A 98 GTTFYLKMD-FETLIKRLNQK 117 (168)
T ss_dssp EEEEEEECC-HHHHHHHHCC-
T ss_pred CEEEEEECC-HHHHHHHHhcc
Confidence 478999886 58999999877
No 110
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=32.39 E-value=22 Score=22.38 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHhhhcchhhhhh
Q psy9156 113 EELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSY 151 (177)
Q Consensus 113 ~~L~~RL~~Rg~es~e~I~~RL~~a~~e~~~~~~~~~~~ 151 (177)
+.-.++|..-| .+.+++.+-|..+..+++.+...+.++
T Consensus 8 e~~Ia~L~smG-fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQG-YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTT-CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55667899999 588999999999988888766666555
No 111
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=31.91 E-value=44 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred EEEEEcCCCHHHHHHHHhhc--------------------CCCCHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGR--------------------GTETEDSLRRRLDL 136 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~R--------------------g~es~e~I~~RL~~ 136 (177)
..|||.+|. +...+|+.+| | -|++++.+|+..
T Consensus 217 ~~i~V~~~~-~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g-~s~e~a~~~i~~ 268 (308)
T 1sq5_A 217 FSIYVDAPE-DLLQTWYINRFLKFREGAFTDPDSYFHNYAK-LTKEEAIKTAMT 268 (308)
T ss_dssp EEEEEECCH-HHHHHHHHHHHHHHHHTTTTCTTSTTHHHHT-SCHHHHHHHHHH
T ss_pred EEEEEECCH-HHHHHHHHHHHHHHHHhhccCCchhhhcccC-CCHHHHHHHHHH
Confidence 679999875 7766677666 4 378888888764
No 112
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=31.25 E-value=53 Score=18.62 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHh
Q psy9156 117 TRLRGRGTETEDSLRRRLDLARRDM 141 (177)
Q Consensus 117 ~RL~~Rg~es~e~I~~RL~~a~~e~ 141 (177)
+-|..||+++..++...-+..+.|+
T Consensus 13 qaleargtdsnaelrameaklkaei 37 (40)
T 1abz_A 13 QALEARGTDSNAELRAMEAKLKAEI 37 (40)
T ss_dssp HHHHHTCSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHH
Confidence 4688999999888776666656555
No 113
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=31.08 E-value=1.4e+02 Score=21.15 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=54.4
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHHHHH
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELE 116 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~~L~ 116 (177)
+++.+++.+......++-..... -|.+ -.+-+++..|++||.. +..|...+- .. .. .+++.+.+.+.|.
T Consensus 103 ~~~~~~~~~~~~~ad~~l~ps~~---e~~~-~~~~Ea~a~G~PvI~~-~~~~~~e~~-~~---~~--g~~~~~~~~~~l~ 171 (200)
T 2bfw_A 103 MLSREFVRELYGSVDFVIIPSYF---EPFG-LVALEAMCLGAIPIAS-AVGGLRDII-TN---ET--GILVKAGDPGELA 171 (200)
T ss_dssp CCCHHHHHHHHTTCSEEEECCSC---CSSC-HHHHHHHHTTCEEEEE-SCHHHHHHC-CT---TT--CEEECTTCHHHHH
T ss_pred cCCHHHHHHHHHHCCEEEECCCC---CCcc-HHHHHHHHCCCCEEEe-CCCChHHHc-CC---Cc--eEEecCCCHHHHH
Confidence 58888999998888887664332 2334 2366778889887664 766766665 22 22 3445566888888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHH
Q psy9156 117 TRLRGRGTETEDSLRRRLDLAR 138 (177)
Q Consensus 117 ~RL~~Rg~es~e~I~~RL~~a~ 138 (177)
+.|..--.-+++..++.-+++.
T Consensus 172 ~~i~~l~~~~~~~~~~~~~~a~ 193 (200)
T 2bfw_A 172 NAILKALELSRSDLSKFRENCK 193 (200)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 7664432113444444433433
No 114
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.19 E-value=1.3e+02 Score=19.98 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHhCCCeEEEEec-------HHHHH---HHHHHcCCCCceEEEEEcCCCHHHHHHHHhhcCC-------CCHHHHHHHHH
Q psy9156 73 VINSGKTCVLDIE-------VQGVQ---QVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT-------ETEDSLRRRLD 135 (177)
Q Consensus 73 ~~~~gk~~il~id-------~~G~~---~lk~~~~~~~~~~~IfI~pps~~~L~~RL~~Rg~-------es~e~I~~RL~ 135 (177)
.+.+...-++.+| .+|.. .+++.. +..-+|++...+......+...-|- .+.+++..++.
T Consensus 45 ~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~---~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 121 (136)
T 3kto_A 45 QQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG---FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQ 121 (136)
T ss_dssp SCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT---CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHH
T ss_pred HHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC---CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHH
Confidence 3445554444444 44544 444544 4444455554433434444334432 36788888887
Q ss_pred HHHHH
Q psy9156 136 LARRD 140 (177)
Q Consensus 136 ~a~~e 140 (177)
++...
T Consensus 122 ~~~~~ 126 (136)
T 3kto_A 122 QIING 126 (136)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77544
No 115
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=28.80 E-value=9.3 Score=24.37 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=28.7
Q ss_pred ceEeeCHHHHHHHHH-cCCeEEEEEeCCceeeecHHHHHHHH
Q psy9156 34 AYHFVTRADMEERIA-AGEFLEHAEFAANLYGTSRAAVEAVI 74 (177)
Q Consensus 34 dY~Fvs~~eF~~~i~-~g~FlE~~~~~G~~YGt~~~~i~~~~ 74 (177)
++|.+|+++.-..|. +|.|+.- ++.-..||+++++|-.++
T Consensus 6 ~~~~~~e~~lL~yIr~sGGildI-~~~a~kygV~kdeV~~~L 46 (59)
T 2xvc_A 6 HHHMITERELLDYIVNNGGFLDI-EHFSKVYGVEKQEVVKLL 46 (59)
T ss_dssp CSCCCCHHHHHHHHHHTTSEEEH-HHHHHHHCCCHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHcCCEEeH-HHHHHHhCCCHHHHHHHH
Confidence 355688888777665 4777764 333568999999987766
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=28.15 E-value=63 Score=24.04 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred eEEEEEcCCCHHHHHHHHhhc----CCCCHHHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRGR----GTETEDSLRRRLDL 136 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~R----g~es~e~I~~RL~~ 136 (177)
-..|||.+|. +...+|+.+| |. +.+++..|+..
T Consensus 149 d~~i~vd~~~-~~~~~R~~~R~~~~g~-t~~~~~~~~~~ 185 (208)
T 3c8u_A 149 DVSIRLEVPM-ADLEARLVQRWLDHGL-NHDAAVARAQG 185 (208)
T ss_dssp SEEEEECCCH-HHHHHHHHHHHHHTTC-CHHHHHHHHHT
T ss_pred CEEEEEeCCH-HHHHHHHHHHHHhcCC-CHHHHHHHHHh
Confidence 3689999875 6655666666 65 78888888864
No 117
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=27.75 E-value=58 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=23.5
Q ss_pred EEEEEcCCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHH
Q psy9156 103 VYVFVKPPSIEELETRLRGRGTE----TEDSLRRRLDLARR 139 (177)
Q Consensus 103 ~~IfI~pps~~~L~~RL~~Rg~e----s~e~I~~RL~~a~~ 139 (177)
++||+..| .+++.+|+.+||+. ...+..++|....+
T Consensus 177 ~vi~L~~~-~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~ 216 (263)
T 1p5z_B 177 GIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHE 216 (263)
T ss_dssp EEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHH
T ss_pred eEEEEECC-HHHHHHHHHhcCCccccCccHHHHHHHHHHHH
Confidence 57888886 59999999888752 12344455544433
No 118
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=26.97 E-value=1.4e+02 Score=23.67 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred cceE-eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCceEEEEEcCCC
Q psy9156 33 KAYH-FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPS 111 (177)
Q Consensus 33 ~dY~-Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps 111 (177)
+.+. +++.+++.+..++..++-.... ...|.+. .+-+++..|++||. .+..|...+-... .. .+++.|.+
T Consensus 265 v~~~g~~~~~~~~~~~~~adv~v~ps~--~~e~~~~-~~~Ea~a~G~PvI~-~~~~~~~e~i~~~---~~--g~~~~~~d 335 (406)
T 2gek_A 265 LRFLGQVDDATKASAMRSADVYCAPHL--GGESFGI-VLVEAMAAGTAVVA-SDLDAFRRVLADG---DA--GRLVPVDD 335 (406)
T ss_dssp EEECCSCCHHHHHHHHHHSSEEEECCC--SCCSSCH-HHHHHHHHTCEEEE-CCCHHHHHHHTTT---TS--SEECCTTC
T ss_pred EEEEecCCHHHHHHHHHHCCEEEecCC--CCCCCch-HHHHHHHcCCCEEE-ecCCcHHHHhcCC---Cc--eEEeCCCC
Confidence 4444 6889999999988888766532 2334443 35667788987665 5666776665443 22 34556678
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy9156 112 IEELETRLRGRGTETEDSLRRRLDLAR 138 (177)
Q Consensus 112 ~~~L~~RL~~Rg~es~e~I~~RL~~a~ 138 (177)
.+.|.+.|..-- .+++..++.-+++.
T Consensus 336 ~~~l~~~i~~l~-~~~~~~~~~~~~~~ 361 (406)
T 2gek_A 336 ADGMAAALIGIL-EDDQLRAGYVARAS 361 (406)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 888887665432 23444333333333
No 119
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=24.81 E-value=95 Score=21.42 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=47.5
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCC-eEEEEecHHHHHHHHHHcCCCCceEEEEEcCCCHH
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGK-TCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIE 113 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk-~~il~id~~G~~~lk~~~~~~~~~~~IfI~pps~~ 113 (177)
+-|++.++..+...+..++-.... +-|.+. .+-+++..|+ +||..-+..|...+.... .. ++.|.+.+
T Consensus 60 ~g~~~~~~~~~~~~~adv~v~ps~---~e~~~~-~~~Eama~G~vPvi~~~~~~~~~~~~~~~-----~~--~~~~~~~~ 128 (166)
T 3qhp_A 60 FGFVNSNELLEILKTCTLYVHAAN---VESEAI-ACLEAISVGIVPVIANSPLSATRQFALDE-----RS--LFEPNNAK 128 (166)
T ss_dssp CCCCCHHHHHHHHTTCSEEEECCC---SCCCCH-HHHHHHHTTCCEEEECCTTCGGGGGCSSG-----GG--EECTTCHH
T ss_pred EeecCHHHHHHHHHhCCEEEECCc---ccCccH-HHHHHHhcCCCcEEeeCCCCchhhhccCC-----ce--EEcCCCHH
Confidence 356888888888888877665332 234453 4667788998 665524444444443222 11 56777888
Q ss_pred HHHHHHhhc
Q psy9156 114 ELETRLRGR 122 (177)
Q Consensus 114 ~L~~RL~~R 122 (177)
.|.+.|..-
T Consensus 129 ~l~~~i~~l 137 (166)
T 3qhp_A 129 DLSAKIDWW 137 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776544
No 120
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=23.79 E-value=33 Score=21.33 Aligned_cols=41 Identities=10% Similarity=-0.031 Sum_probs=32.8
Q ss_pred eEeeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhC
Q psy9156 35 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76 (177)
Q Consensus 35 Y~Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~ 76 (177)
+.-+|+..+-+++++|.|-.....++.. .-..++|++.+++
T Consensus 19 ~lgvsrstiy~~~~~g~fP~piklG~~~-~w~~~ev~~Wl~~ 59 (66)
T 1z4h_A 19 DTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNK 59 (66)
T ss_dssp HHSSCHHHHHHHHHHHHCCCSEESSSCE-EEEHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHCCCCCCCEEeCCCe-EEeHHHHHHHHHH
Confidence 3348999999999999998866776666 4888999888754
No 121
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=23.55 E-value=1.7e+02 Score=23.54 Aligned_cols=94 Identities=10% Similarity=-0.001 Sum_probs=58.9
Q ss_pred eeCHHHHHHHHHcCCeEEEEEeCCceeeecHHHHHHHHhCCCeEEEEecHHHHHHHHHHcCCCCc----e---------E
Q psy9156 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAG----A---------V 103 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~FlE~~~~~G~~YGt~~~~i~~~~~~gk~~il~id~~G~~~lk~~~~~~~~----~---------~ 103 (177)
+++.+++.+..++..++-.... +-|.+ -.+-+++..|.+||. -+..|...+-... .. + .
T Consensus 261 ~~~~~~~~~~~~~adv~v~pS~---~E~~~-~~~lEAma~G~PvI~-s~~~g~~e~v~~~---~~~~i~~~~~~~~~~~~ 332 (413)
T 3oy2_A 261 VLTDERVDMMYNACDVIVNCSS---GEGFG-LCSAEGAVLGKPLII-SAVGGADDYFSGD---CVYKIKPSAWISVDDRD 332 (413)
T ss_dssp CCCHHHHHHHHHHCSEEEECCS---CCSSC-HHHHHHHTTTCCEEE-ECCHHHHHHSCTT---TSEEECCCEEEECTTTC
T ss_pred cCCHHHHHHHHHhCCEEEeCCC---cCCCC-cHHHHHHHcCCCEEE-cCCCChHHHHccC---ccccccccccccccccc
Confidence 5889999999988887766433 23444 236677889988766 5666766655432 11 0 0
Q ss_pred EE--EEcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy9156 104 YV--FVKPPSIEELETRLRGRGTETEDSLRRRLDLARRD 140 (177)
Q Consensus 104 ~I--fI~pps~~~L~~RL~~Rg~es~e~I~~RL~~a~~e 140 (177)
.+ ++.|.+.+.|.+.| .-- .+++..++.-.++.+.
T Consensus 333 G~~gl~~~~d~~~la~~i-~l~-~~~~~~~~~~~~a~~~ 369 (413)
T 3oy2_A 333 GIGGIEGIIDVDDLVEAF-TFF-KDEKNRKEYGKRVQDF 369 (413)
T ss_dssp SSCCEEEECCHHHHHHHH-HHT-TSHHHHHHHHHHHHHH
T ss_pred CcceeeCCCCHHHHHHHH-HHh-cCHHHHHHHHHHHHHH
Confidence 23 56667889999988 554 3555555444444443
No 122
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=23.41 E-value=96 Score=23.83 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=31.2
Q ss_pred ceeeecHHHHHHHHhCC------CeEEEEecHHHHHHHHHHcCCCCceEEEEEcC
Q psy9156 61 NLYGTSRAAVEAVINSG------KTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKP 109 (177)
Q Consensus 61 ~~YGt~~~~i~~~~~~g------k~~il~id~~G~~~lk~~~~~~~~~~~IfI~p 109 (177)
.|+||..+.+..++++| ..|-+..|...+...=...+ ..|++|+|.+
T Consensus 94 lyHGT~~~~~~~I~~~GL~~m~R~hVHLs~~~~~a~~vG~R~~--~~~V~i~Id~ 146 (186)
T 1wfx_A 94 LYHGTTEEALPLIMERGIMRGRRLKVHLTSSLEDAVSTGRRHG--NLVAVLLVDV 146 (186)
T ss_dssp EEECCBGGGHHHHHHHCBCCCSSSSEEEESCHHHHHHHHTTSS--SSBEEEEEEH
T ss_pred EEEeCCHHHHHHHHHhCCCCCCCCEEEEecCCCCCeEeeccCC--CccEEEEEcH
Confidence 47899999998888776 35666667665543322331 3688888874
No 123
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=22.91 E-value=1.5e+02 Score=19.41 Aligned_cols=70 Identities=7% Similarity=0.085 Sum_probs=37.4
Q ss_pred eeCHHHHHHHHHcCCe--EEEEEeCCceeeec-HHHHHHHHhC-CCeEEEEecHHHHHHHHHHcCCCCceEEEEE
Q psy9156 37 FVTRADMEERIAAGEF--LEHAEFAANLYGTS-RAAVEAVINS-GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFV 107 (177)
Q Consensus 37 Fvs~~eF~~~i~~g~F--lE~~~~~G~~YGt~-~~~i~~~~~~-gk~~il~id~~G~~~lk~~~~~~~~~~~IfI 107 (177)
--|.++|++.+++|.. +.++. ..--++.. ...++++.++ ..+.++.+|...-..+.+.++-..-|.++++
T Consensus 17 ~~~~~~~~~~~~~~k~vvv~F~a-~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 90 (114)
T 2oe3_A 17 LTNLTEFRNLIKQNDKLVIDFYA-TWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLG 90 (114)
T ss_dssp CCSHHHHHHHHHHCSEEEEEEEC-TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred cCCHHHHHHHHhCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEE
Confidence 3578899999998874 33331 11112211 1223343332 2267777777666667777653234555554
No 124
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=21.25 E-value=1.2e+02 Score=22.53 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=27.1
Q ss_pred HHHHhCCCeEEEEecH---HHHHHHHHHcC------C-CCceEEEEEcCCCHHHHHHHH
Q psy9156 71 EAVINSGKTCVLDIEV---QGVQQVKRAGG------A-MAGAVYVFVKPPSIEELETRL 119 (177)
Q Consensus 71 ~~~~~~gk~~il~id~---~G~~~lk~~~~------~-~~~~~~IfI~pps~~~L~~RL 119 (177)
...++.|..+|++.-. .....++.... . .....+||+..| .+++.+|+
T Consensus 92 ~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~ 149 (211)
T 1m7g_A 92 KLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRD 149 (211)
T ss_dssp HHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSC
T ss_pred HHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhh
Confidence 3456789888887321 22233333210 0 022577888876 58888885
No 125
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=20.41 E-value=1.1e+02 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=20.8
Q ss_pred eEEEEEcCCCHHHHHHHHhh-----cCCCCHHHHHHHH
Q psy9156 102 AVYVFVKPPSIEELETRLRG-----RGTETEDSLRRRL 134 (177)
Q Consensus 102 ~~~IfI~pps~~~L~~RL~~-----Rg~es~e~I~~RL 134 (177)
.+.|||.+|. ++..+|+.+ +...+.+++.+++
T Consensus 164 ~~~ifl~A~~-e~r~~R~~~~l~~~~~~~~~~~~~~~i 200 (252)
T 4e22_A 164 PVKIFLDASS-QERAHRRMLQLQERGFNVNFERLLAEI 200 (252)
T ss_dssp SEEEEEECCH-HHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CEEEEEECCH-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5779999964 766666543 4345677766655
No 126
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=20.34 E-value=3e+02 Score=21.20 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCeEEEEe---------------cHHHHHHHHHHcCC-CCceEEEEEcCCCHHHHHHHHhhcCCCCH--HH
Q psy9156 68 AAVEAVINSGKTCVLDI---------------EVQGVQQVKRAGGA-MAGAVYVFVKPPSIEELETRLRGRGTETE--DS 129 (177)
Q Consensus 68 ~~i~~~~~~gk~~il~i---------------d~~G~~~lk~~~~~-~~~~~~IfI~pps~~~L~~RL~~Rg~es~--e~ 129 (177)
+.|...+++|++||+|= |.+-+..+.....+ .+ -.+||+..|. ++..+|+ +|++... .+
T Consensus 98 ~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~P-Dl~I~Ldv~~-e~~~~Ri-~rdr~E~~~~e 174 (223)
T 3ld9_A 98 KIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYP-DITFIIDVDI-NESLSRS-CKNGYEFADME 174 (223)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCC-SEEEEEECC------------------CHH
T ss_pred HHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCC-CeEEEEeCCH-HHHHHHh-ccCccccchHH
Confidence 34666778888887754 23333344332211 13 3567777654 7888888 5554222 35
Q ss_pred HHHHHHHHHHHh
Q psy9156 130 LRRRLDLARRDM 141 (177)
Q Consensus 130 I~~RL~~a~~e~ 141 (177)
..+|+..+-.++
T Consensus 175 ~~~rv~~~y~~l 186 (223)
T 3ld9_A 175 FYYRVRDGFYDI 186 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666776665555
Done!