RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9156
(177 letters)
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 198 bits (506), Expect = 1e-65
Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Query: 12 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVE 71
FS+S TTR PRPGEVDG Y FV++ + EE I AGEFLE AE N YGT ++ VE
Sbjct: 25 PNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEVHGNYYGTPKSPVE 84
Query: 72 AVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLR 131
+ +GK +L+I+VQG +QVK+ AV +F+ PPS+EELE RLR RGT++E+ +
Sbjct: 85 EALAAGKDVLLEIDVQGARQVKK---KFPDAVSIFILPPSLEELERRLRKRGTDSEEVIE 141
Query: 132 RRLDLARRDMSY 143
RRL A++++++
Sbjct: 142 RRLAKAKKEIAH 153
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 196 bits (502), Expect = 1e-64
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 11 PDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAV 70
SVS TTR PRPGEVDG Y FV++ + EE I GEFLE AE N YGT R+ V
Sbjct: 29 DPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRSPV 88
Query: 71 EAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSL 130
E + +GK +L+I+ QG +QVK+ M AV +F+ PPS+EELE RLRGRGT++E+ +
Sbjct: 89 EEALAAGKDVLLEIDWQGARQVKK---KMPDAVSIFILPPSLEELERRLRGRGTDSEEVI 145
Query: 131 RRRLDLARRDMSY 143
RRL AR ++++
Sbjct: 146 ARRLAKAREEIAH 158
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 178 bits (454), Expect = 8e-58
Identities = 69/137 (50%), Positives = 103/137 (75%), Gaps = 3/137 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
+YP++FG+SVSHTTR PRPGEVDGK YHFV++ +ME I+A EFLE+AEF N YGTS
Sbjct: 23 LDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAEFNGNYYGTS 82
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ A+E + SGK C+LD+++QGV+Q+++ A + VF+KPPS++ L+ RL+ RGTE
Sbjct: 83 KEAIEQIAESGKICILDVDIQGVKQLRK---AELSPISVFIKPPSLKVLQRRLKRRGTEQ 139
Query: 127 EDSLRRRLDLARRDMSY 143
E+ + +R++ A ++ +
Sbjct: 140 EEKINKRMEAAEQEFQH 156
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 177 bits (452), Expect = 3e-57
Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 3/132 (2%)
Query: 12 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVE 71
D+ FSVS TTR PRPGEVDG Y FVT + EE I EFLE AE+ N YGTSR VE
Sbjct: 28 DKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREPVE 87
Query: 72 AVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLR 131
+ GK +LDI+VQG QVK+ M AV +F+ PPS+EELE RL+GRGT++E+ +
Sbjct: 88 QALAEGKDVILDIDVQGALQVKK---KMPNAVSIFILPPSLEELERRLKGRGTDSEEVIA 144
Query: 132 RRLDLARRDMSY 143
RRL+ A++++S+
Sbjct: 145 RRLENAKKEISH 156
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 170 bits (432), Expect = 1e-54
Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 3/135 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
Q+ PD F VSHTTR PRPGEV+G YHFV++ + E+ I +G FLE E+ N YGTS
Sbjct: 13 IQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWGEYEGNYYGTS 72
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ + V GK C+LDI+ QGV+Q+++ A + +F+ PPS EELE RLR RGTET
Sbjct: 73 KETIRQVAEKGKHCLLDIDPQGVKQLRK---AQLYPIVIFIAPPSSEELERRLRQRGTET 129
Query: 127 EDSLRRRLDLARRDM 141
+ +++RL A+++
Sbjct: 130 SERIQKRLAAAQKEA 144
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 175 bits (446), Expect = 4e-54
Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Query: 8 QDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSR 67
+++P FGFSVSHTTR PR E DG YHF R+ ME+ I G+FLE A NLYGTS
Sbjct: 157 KEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSI 216
Query: 68 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE 127
AVE V +SGK C+LDI+VQG + V+ + A+++F+ PPS+EELE RLR RGTETE
Sbjct: 217 EAVEVVTDSGKRCILDIDVQGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTETE 273
Query: 128 DSLRRRLDLARRDMSYGKDS 147
+ +++RL A ++ GK S
Sbjct: 274 EQIQKRLRNAEAELEQGKSS 293
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 159 bits (404), Expect = 1e-50
Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
+++ FGFSVSHTTR PRPGEVDG YHFV++ + E I GEFLE AEF N YGTS
Sbjct: 20 LEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTS 79
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPP 110
+AAVE + GK +L+I+VQG +QVK+ + AV +F+ PP
Sbjct: 80 KAAVEEALAEGKIVILEIDVQGARQVKK---SYPDAVSIFILPP 120
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 122 bits (309), Expect = 1e-35
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 14 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAV 73
F F V+ TTR RPGE+DG YHFVT + E I+ E LE AE N YG +A V
Sbjct: 40 FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQA 99
Query: 74 INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 133
+ SG+ ++ ++VQG +KR + AV++F+ PPS++EL RL R TE+ + L RR
Sbjct: 100 LASGRDVIVKVDVQGAASIKR---LVPEAVFIFLAPPSMDELTRRLELRRTESPEELERR 156
Query: 134 LDLARRDM 141
L A ++
Sbjct: 157 LATAPLEL 164
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 109 bits (274), Expect = 1e-30
Identities = 56/128 (43%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 8 QDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSR 67
+++PD F FS+S TTR PRPG+ +GK Y F+T + ++ IA GEFLE AE N YGT +
Sbjct: 26 EEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPK 84
Query: 68 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE 127
A +E G++ ++DI+VQG + +K V +F++PPS EE E RL RGT++E
Sbjct: 85 AFIEDAFKEGRSAIMDIDVQGAKIIKEK--FPERIVTIFIEPPSEEEWEERLIHRGTDSE 142
Query: 128 DSLRRRLD 135
+S+ +R++
Sbjct: 143 ESIEKRIE 150
>gnl|CDD|238987 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a
family of proteins similar to phosphoribulokinase
(PRK), the enzyme involved in the Benson-Calvin cycle
in chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and
NADPH produced by the primary reactions of
photosynthesis.
Length = 277
Score = 33.2 bits (76), Expect = 0.045
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 24 GPRPGEVDGKAYHFVTRADMEERIA----AGEFLEHAEFAANLYG 64
G P V+G ++H R +M+ IA AG H ANL+
Sbjct: 27 GIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFD 71
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PMID:15231805), including
phosphites as well as phosphonates. PhnN in E. coli
shows considerable homology to guanylate kinases (EC
2.7.4.8), and has actually been shown to act as a ribose
1,5-bisphosphokinase (PRPP forming). This suggests an
analogous kinase reaction for phosphonate metabolism,
converting 5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 29.6 bits (67), Expect = 0.55
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 26 RPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIE 85
RP G+ + ++ + + R G F + YG A ++ + +G V++
Sbjct: 40 RPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP-AEIDQWLEAGDVVVVN-- 96
Query: 86 VQGVQQVKRAGGAMAGAVYVFVKPPSI----EELETRLRGRGTETEDSLRRRLDLARRDM 141
RA A Y + +I + L RL RG E+ + + RL + R
Sbjct: 97 ------GSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLARSARFA 150
Query: 142 SYGKD 146
+ D
Sbjct: 151 AAPAD 155
>gnl|CDD|237970 PRK15453, PRK15453, phosphoribulokinase; Provisional.
Length = 290
Score = 29.8 bits (68), Expect = 0.66
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 26 RPGEVDGKAYHFVTRADMEERIA----AGEFLEHAEFAANLYG 64
V+G ++H TR +M+ IA AG H ANL+
Sbjct: 35 NAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFD 77
>gnl|CDD|239241 cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding
domain. Enoate reductase catalyzes the NADH-dependent
reduction of carbon-carbon double bonds of several
molecules, including nonactivated 2-enoates,
alpha,beta-unsaturated aldehydes, cyclic ketones, and
methylketones. ERs are similar to 2,4-dienoyl-CoA
reductase from E. coli and to the old yellow enzyme from
Saccharomyces cerevisiae.
Length = 382
Score = 29.8 bits (67), Expect = 0.80
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 8 QDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAA 60
+D+P +SV + R G + G+ + R D+EE + A + LE A + A
Sbjct: 217 EDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDA 268
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 28.6 bits (64), Expect = 2.0
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 108 KPPSIEELETRLRGRGTETEDSLRRRLDLARRD 140
KP S EEL L G E ++LRRRL RD
Sbjct: 33 KPASREELAVELNIEGEEQLEALRRRLRAMERD 65
>gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription].
Length = 229
Score = 28.0 bits (63), Expect = 2.2
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETR----LRGRGTETEDSLRR-------RLDLARRDMS 142
R G AGA KP S EL R LR + LD R ++
Sbjct: 87 RVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTRTVT 146
Query: 143 YGKDSL 148
L
Sbjct: 147 LNGREL 152
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 27.5 bits (61), Expect = 4.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 109 PPSIEELETRLRGRGTETEDSLRRRLDLARRD 140
PP EE++ RL R +TE+ ++ RL + +++
Sbjct: 137 PPESEEIKARLITRPDDTEEKVKARLQIYKKN 168
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the
sensor partner in a two-component systems; contains a
phosphoacceptor site that is phosphorylated by histidine
kinase homologs; usually found N-terminal to a DNA
binding effector domain; forms homodimers.
Length = 113
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 97 GAMAGAVYVFVKPPSIEELETRLR 120
AGA KP S EEL R+R
Sbjct: 87 ALKAGADDYLTKPFSPEELLARIR 110
>gnl|CDD|220663 pfam10266, Strumpellin, Hereditary spastic paraplegia protein
strumpellin. This is a family of proteins conserved
from plants to humans, in which two closely situated
point mutations in the human protein lead to the
condition of hereditary spastic paraplegia. Strumpellin
contains one known domain called a spectrin repeat that
consists of three alpha-helices of a characteristic
length wrapped in a left-handed coiled coil. The
spectrin proteins have multiple copies of this repeat,
which can then form multimers in the cell. Spectrin
associates with the cell membrane via spectrin repeats
in the ankyrin protein. The spectrin repeat is a
structural platform for cytoskeletal protein assemblies.
Length = 1077
Score = 26.9 bits (60), Expect = 6.3
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 84 IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 143
I + V+Q+ +A + ++ K E + +L D L RR++ RR Y
Sbjct: 681 IRKELVKQITKALHS--QLIFDNKKKSKASEFDEKL--------DKLGRRIEGFRRSFEY 730
Query: 144 GKDSLRSYG 152
+D + +G
Sbjct: 731 IQDYVNIHG 739
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 26.6 bits (59), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 117 TRL--RGRGTETEDSLRRRLDLARRD 140
RL RGR +TE+ +RRRL++ R
Sbjct: 123 ERLLARGRKDDTEEVIRRRLEVYREQ 148
>gnl|CDD|220062 pfam08894, DUF1838, Protein of unknown function (DUF1838). This
family of proteins are functionally uncharacterized.
Length = 238
Score = 26.7 bits (59), Expect = 6.8
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 1 VYSILFFQDYPDRFGFSV---SHTTRGPRPGEVDGKAYHFVTR 40
VY+ P F + + P P GK Y ++R
Sbjct: 13 VYA--RIPGEPREHLFGIEGMNVARCIPPPEGEGGKGYRLLSR 53
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 26.9 bits (59), Expect = 7.2
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 112 IEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLR 149
+ E+ETRLR + ++TE RRL+ ARR+ + SLR
Sbjct: 580 VAEVETRLREQLSDTE----RRLNEARREHAKAVVSLR 613
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,234,736
Number of extensions: 867012
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 39
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)