RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9156
(177 letters)
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 227 bits (581), Expect = 5e-77
Identities = 79/141 (56%), Positives = 102/141 (72%), Gaps = 3/141 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
FQ++ FGFSVSHTTR PRPGE DGK Y+FVTR M+ IAAG+F+EHAEF+ NLYGTS
Sbjct: 25 FQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS 84
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ AV AV + CVLD+++QGV+ +K+ +Y+FV+PPS++ LE RLR R TET
Sbjct: 85 KEAVRAVQAMNRICVLDVDLQGVRSIKK---TDLCPIYIFVQPPSLDVLEQRLRLRNTET 141
Query: 127 EDSLRRRLDLARRDMSYGKDS 147
E+SL +RL AR DM K+
Sbjct: 142 EESLAKRLAAARTDMESSKEP 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 224 bits (573), Expect = 6e-76
Identities = 69/141 (48%), Positives = 100/141 (70%), Gaps = 2/141 (1%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
F +YPD FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+F+ N YG++
Sbjct: 22 FAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
A+V+ V SGKTC+LDI++QGV+ VK A ++F+ PPS+E+L+ RL GRGTET
Sbjct: 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPE--LNARFLFIAPPSVEDLKKRLEGRGTET 139
Query: 127 EDSLRRRLDLARRDMSYGKDS 147
E+S+ +RL A+ +++Y +
Sbjct: 140 EESINKRLSAAQAELAYAETG 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 222 bits (567), Expect = 8e-75
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
++P RF FS+S TTR R E +G Y+FV + D E ++ G+FLE ++A N YGT
Sbjct: 33 LSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTL 92
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
++ + + GK C+ ++ + GV+Q+K + + +Y+FVKPPSI+ L RL+ R TE
Sbjct: 93 KSEYDLAVGEGKICLFEMNINGVKQLKES-KHIQDGIYIFVKPPSIDILLGRLKNRNTEK 151
Query: 127 EDSLRRRLDLARRDMSYGK 145
+ + +R+ R+M
Sbjct: 152 PEEINKRMQELTREMDEAD 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 222 bits (567), Expect = 1e-74
Identities = 43/139 (30%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
++P+ F FSVS TTR R E +G Y+F+ + E+++ +FLE+ +A N YGT
Sbjct: 44 LNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTL 103
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
++ + K C+ ++ + GV+Q+K++ + A+Y+F+KPPS + L +RL R TE
Sbjct: 104 KSEYDKAKEQNKICLFEMNINGVKQLKKSTH-IKNALYIFIKPPSTDVLLSRLLTRNTEN 162
Query: 127 EDSLRRRLDLARRDMSYGK 145
++ +++R++ ++
Sbjct: 163 QEQIQKRMEQLNIELHEAN 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 216 bits (554), Expect = 8e-73
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
F+D + +S+S TTR R GEVDG Y F TR E I +F+E+AE+ N YGT
Sbjct: 27 FEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTP 86
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
V+ ++ G L+IEV+G +QV++ A+++F+ PPS+E L RL GRGTE+
Sbjct: 87 VQYVKDTMDEGHDVFLEIEVEGAKQVRK---KFPDALFIFLAPPSLEHLRERLVGRGTES 143
Query: 127 EDSLRRRLDLARRDMSYGKD 146
++ ++ R++ AR+++
Sbjct: 144 DEKIQSRINEARKEVEMMNL 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 215 bits (549), Expect = 5e-72
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
F+D F +S+S TTR PR GE DG Y+F +R E+ I G+ LE+AE+ N YGT
Sbjct: 29 FKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTP 88
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
VE + +G L+IEVQG QV++ AM +++F+ PP + EL+ R+ GRGTE+
Sbjct: 89 LEYVEEKLAAGVDIFLEIEVQGAMQVRK---AMPEGIFIFLTPPDLSELKNRIIGRGTES 145
Query: 127 EDSLRRRLDLARRDMSYGKD 146
+ + R++ A++++
Sbjct: 146 MEVVEERMETAKKEIEMMAS 165
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 203 bits (519), Expect = 2e-67
Identities = 58/139 (41%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY--G 64
+ P+ FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE L+ G
Sbjct: 41 RERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG 99
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124
T V A +G ++++++ G + +K+ M AV VF+ PPS ++L+ RL GRGT
Sbjct: 100 TLAQPVRAAAATGVPVLIEVDLAGARAIKK---TMPEAVTVFLAPPSWQDLQARLIGRGT 156
Query: 125 ETEDSLRRRLDLARRDMSY 143
ET D ++RRLD AR +++
Sbjct: 157 ETADVIQRRLDTARIELAA 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 200 bits (510), Expect = 3e-66
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
P++F + V +TTR PR E DGK YHF++ +M I+A EFLE + N++GT
Sbjct: 40 LSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTK 99
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
V + K +LDIE Q ++ V+ A VF+ P L+ ++
Sbjct: 100 FETVHQIHKQNKIAILDIEPQTLKIVRT---AELSPFIVFIAPTDQGTQTEALQQLQKDS 156
Query: 127 E 127
E
Sbjct: 157 E 157
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 196 bits (501), Expect = 4e-65
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
+PDRF + + HTTR P+ E +GK Y+FV+ M + I+ E+LE+ +YGT
Sbjct: 26 ITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK 85
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ + G +LD+E Q ++ ++ A VF+ P+I G
Sbjct: 86 LETIRKIHEQGLIAILDVEPQALKVLRT---AEFAPFVVFIAAPTIT--------PGLNE 134
Query: 127 EDSLRRRLDLARR-DMSYG 144
++SL+R + +Y
Sbjct: 135 DESLQRLQKESDILQRTYA 153
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 194 bits (495), Expect = 1e-63
Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 5 LFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 64
L SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHAE N YG
Sbjct: 36 LLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 95
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124
TSR A+E V+ +G LDI+ QG QQ+++ M A +F+ PPS EL+ RLRGRG
Sbjct: 96 TSREAIEQVLATGVDVFLDIDWQGAQQIRQ---KMPHARSIFILPPSKIELDRRLRGRGQ 152
Query: 125 ETEDSLRRRLDLARRDMSYGKD 146
++E+ + +R+ A +MS+ +
Sbjct: 153 DSEEVIAKRMAQAVAEMSHYAE 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 191 bits (488), Expect = 8e-63
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 12 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVE 71
S+SHTTR RPG+ +G Y F+ + + G FLEHA YGT + V
Sbjct: 32 AEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVL 91
Query: 72 AVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLR 131
+ +G+ +L+I+ QG +Q++ A+ +F+ PPSIE L RL R + +
Sbjct: 92 RQLKAGRDVLLEIDWQGARQIRE---LFPPALSIFILPPSIEALRERLIKRRQDDTAIIE 148
Query: 132 RRLDLARRDMSYGKD 146
+RL LAR +M++ K+
Sbjct: 149 QRLALAREEMAHYKE 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 190 bits (484), Expect = 8e-62
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
+ + SVS TTR R GE +GK Y+FV R + + GE +EHAE N YG
Sbjct: 48 LEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVP 107
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
R +E ++ G + +L I+ QG + V +F+ PPS+EEL RL GR +
Sbjct: 108 RKNLEDNVDKGVSTLLVIDWQGAFKFMEMMR--EHVVSIFIMPPSMEELRRRLCGRRADD 165
Query: 127 EDSLRRRLDLARRDMSYGKD 146
+ + RL A ++S+ +
Sbjct: 166 SEVVEARLKGAAFEISHCEA 185
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 188 bits (478), Expect = 3e-60
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGT 65
+YPD+FG V HTTR R EVDG+ YHFV+ R ME I F+E ++ NLYGT
Sbjct: 118 ISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGT 177
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
S A+V V GK C+LD+ +++++ A V VF+KP S++ + R E
Sbjct: 178 SVASVREVAEKGKHCILDVSGNAIKRLQV---AQLYPVAVFIKPKSVDSVMEMNRRMTEE 234
Query: 126 TEDSLRRRLDLARRDMS 142
R ++
Sbjct: 235 QAKKTYERAIKMEQEFG 251
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 182 bits (464), Expect = 5e-58
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGT 65
++PD+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYGT
Sbjct: 123 LSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGT 182
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
S +V V GK C+LD+ V++++ A + +F++P S+E +
Sbjct: 183 SVQSVREVAEQGKHCILDVSANAVRRLQA---AHLHPIAIFIRPRSLENVL---EINKRI 236
Query: 126 TEDSLRRRLDLARRDMS 142
TE+ R+ D A +
Sbjct: 237 TEEQARKAFDRATKLEQ 253
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 154 bits (389), Expect = 3e-44
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGT 65
++PD+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYGT
Sbjct: 549 LSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGT 608
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
S +V V GK C+LD+ V++++ A + +F++P S+E +
Sbjct: 609 SVQSVREVAEQGKHCILDVSANAVRRLQAAHLH---PIAIFIRPRSLENVL---EINKRI 662
Query: 126 TEDSLRRRLDLARR-DMSYG 144
TE+ R+ D A + + +
Sbjct: 663 TEEQARKAFDRATKLEQEFT 682
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 113 bits (282), Expect = 1e-30
Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 23/167 (13%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANL--YG 64
F RF +S T R + + + + +E + ++L
Sbjct: 166 FDFLKHRFEGRISIT-RVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLAEVQ 216
Query: 65 TSRAAVEAVINSGKTCVLDIE-VQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 123
+ + + + + VLD + + Q+ + A + V+VK S + L+ ++ RG
Sbjct: 217 SEIERIFELARTLQLVVLDADTINHPAQLSKTSLA---PIVVYVKISSPKVLQRLIKSRG 273
Query: 124 TETEDSLRRRLDLARRDMSYGKDSLRSYGKNS--------LRSYVEA 162
L ++ A + + + L Y+EA
Sbjct: 274 KSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEA 320
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 76.8 bits (188), Expect = 3e-17
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 24 GPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLD 83
GP +IA E + + ++ +I+ K +LD
Sbjct: 239 GPIADVA---REKLAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLD 295
Query: 84 IEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139
+ V ++ A + VF+ P S + ++T E+ S R+ + + +
Sbjct: 296 VTPNAVDRLNYAQWY---PIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK 348
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 75.3 bits (184), Expect = 2e-16
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 43 MEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGA 102
+IA E + + ++ +I+ K +LD+ V ++ A
Sbjct: 247 DIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWY---P 303
Query: 103 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 139
+ VF+ P S + ++T E+ S R+ + + +
Sbjct: 304 IVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK 340
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 69.8 bits (170), Expect = 7e-15
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 20 HTTRGPRPGEVDGKAYHFVTR---ADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINS 76
RP + G + A+M ++ E + + + V +
Sbjct: 140 REASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETVSRTD--SPSKIIKLDTVRVIAEK 197
Query: 77 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136
K +LD+ ++++ + VF P S L+ + + S RR
Sbjct: 198 DKHALLDVTPSAIERLNYVQYY---PIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQ 254
Query: 137 ARR-DMSYGK 145
A++
Sbjct: 255 AQKLRKHSSH 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 8e-04
Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 70/211 (33%)
Query: 12 DRFGFSVSHTTR----------GPRPGE--------------VDGKAYHFVTRADMEERI 47
D +GFS+ G G+ VDGK ++ E
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 48 AAGEF------LEHAEFA--ANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKR--AG- 96
+ F L +F A L +AA E D++ +G+ AG
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPA-LTLMEKAAFE-----------DLKSKGLIPADATFAGH 1762
Query: 97 --G------AMAGAVYVFVKPPSIEE-LET-RLRGRGTETEDSLRRRLDLARRDM---SY 143
G ++A V SIE +E RG T R L + M +
Sbjct: 1763 SLGEYAALASLAD---VM----SIESLVEVVFYRGM-TMQVAVPRDELGRSNYGMIAINP 1814
Query: 144 GKDSLRSYGKNSLRSYVE-ASVSSGNMLKIA 173
G+ + S+ + +L+ VE +G +++I
Sbjct: 1815 GRVAA-SFSQEALQYVVERVGKRTGWLVEIV 1844
Score = 25.8 bits (56), Expect = 9.9
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 22/81 (27%)
Query: 109 PPSIEELETRL---------RGRGTETEDSLRRRLDLARRDMSYGKD------SLRS--- 150
P + EL + + + + L L G D L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 151 ----YGKNSLRSYVEASVSSG 167
K +++Y+ A + +
Sbjct: 114 TTLVKTKELIKNYITARIMAK 134
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 31.3 bits (71), Expect = 0.15
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARRDMSYGKDSLRSY 151
R G +GA KP L R+R R D LR+R RR + R
Sbjct: 90 RIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLD 149
Query: 152 GKNSLRSYVEASVSSGNMLK 171
G V+ + +
Sbjct: 150 GLGGRVLIVDDNERQAQRVA 169
Score = 29.0 bits (65), Expect = 0.92
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR-RDMSYGKDSL-----RSYGK 153
G + +P +EL R++ + + R +L +++ D L R Y
Sbjct: 245 IGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAV-TDQLTGLHNRRYMT 303
Query: 154 NSLRSYVEASVSSGNMLKIAF 174
L S V+ + G+ +
Sbjct: 304 GQLDSLVKRATLGGDPVSALL 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 29.5 bits (67), Expect = 0.43
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 79 TCVLDIEVQGVQQVKRAGG----AMAGAVY-VFVKPPSIEELETRLRGRGTETEDSLRRR 133
+ ++V V+R G + G +Y + PP EE+ +RL R +TE+ ++ R
Sbjct: 110 DTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLR 169
Query: 134 LD 135
L+
Sbjct: 170 LE 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.57
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 30/54 (55%)
Query: 111 SIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDS---LRSYGKNSLRSYVE 161
++++L+ L+ L Y DS L ++++ +E
Sbjct: 21 ALKKLQASLK---------L------------YADDSAPAL------AIKATME 47
Score = 28.0 bits (61), Expect = 1.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 145 KDSLRSYGKNSLRSYVEASVSSGNMLKI-AFTE 176
K +L+ + SL+ Y + S + L I A E
Sbjct: 19 KQALKKL-QASLKLYADDSAPA---LAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.4
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 24/91 (26%)
Query: 82 LDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 141
+D E G Q + + VF ++ + + + +D + L D
Sbjct: 7 MDFET-GEHQYQ-----YKDILSVFE-DAFVDNFDCK------DVQDMPKSILSKEEIDH 53
Query: 142 SYGK-----------DSLRSYGKNSLRSYVE 161
+L S + ++ +VE
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 28.2 bits (63), Expect = 1.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 63 YGTSRAAVEAVINSGKTCVLDIE---------VQGVQQVKRAGGAMAGAVYVFV 107
YGT A +E G V+ I+ V+ +++++ AG + V V V
Sbjct: 352 YGTKAA-IEGEYKKGDRVVI-IDDLVSTGETKVEAIEKLRSAGLEVVSIV-VLV 402
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein,
ALPH-beta sandwich, winged-helix, helix helix, DNA
binding protein; HET: DNA MSE; 1.50A {Thermotoga
maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Length = 225
Score = 27.8 bits (63), Expect = 1.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 107 VKPPSIEELETRLRG---RGTETEDSLRR----RLDLARR 139
KP + EL R+R R +E++ + LD A +
Sbjct: 102 PKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATK 141
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 27.2 bits (61), Expect = 1.9
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 104 YVFVK----PPSIEELETRLRGRGTETEDSLRRR------LDLARRDMS 142
+V P SI+E++ LR T++ + R L++ M
Sbjct: 28 FVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMP 76
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 113 EELETRLRGRGTE--TEDSLRRRLD 135
E L RL+GRG T+D + R+
Sbjct: 138 EVLLERLKGRGRADDTDDVILNRMK 162
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 27.3 bits (61), Expect = 2.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 25 PRPGEVDGKAYHFVTRADMEERIAAGEF 52
P ++ ++T + RIAAGE
Sbjct: 129 FNPNDIS--GGEWLTPEHLLARIAAGEA 154
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 27.2 bits (60), Expect = 3.4
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 31 DGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVI-NSGKTCVLDIEVQGV 89
DG A V + E E A + S A++ + +G T L +V G+
Sbjct: 217 DGAAALIVGSDPVPEIEKPI--FEMVWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGI 274
Query: 90 QQVKRAGGAMAGAVYVFVKPPSI---EELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 146
+ A+ +P I + G D + ++L L M+ ++
Sbjct: 275 -----VSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATRE 329
Query: 147 SLRSYG 152
L YG
Sbjct: 330 VLSEYG 335
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 26.9 bits (60), Expect = 3.4
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLRG-RGTETEDSLRRRLDLARR 139
G + +Y F+ P ++ + RL +GT +S +
Sbjct: 210 IGAGLGSLLYDFLLFPRLKSVSERLSILKGTRPSESNGQPEVTGEP 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 26.7 bits (60), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 113 EELETRLRGRGTE------TEDSLRRRLD 135
EEL R+ R E+++RRRL+
Sbjct: 117 EELVRRILRRAELEGRSDDNEETVRRRLE 145
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 26.7 bits (60), Expect = 3.9
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 113 EELETRLRGRGTE------TEDSLRRRLD 135
E + RL RG E+++++RL+
Sbjct: 124 ETMTQRLLKRGETSGRVDDNEETIKKRLE 152
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 26.0 bits (58), Expect = 4.4
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 104 YVFV----KPPSIEELETRLRGRGTETEDSLRRR------LDLARRDMS 142
+ P S +EL L TED + R LD+ ++S
Sbjct: 27 FQEHNIMTSPLSRDELLKILSYTENGTEDIISTRSKVFQKLDIDVDELS 75
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 26.6 bits (59), Expect = 4.7
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLRG-RGTETEDSLRRRLDLARR 139
G A+A +Y F+ P +L R++ + E+ D+ R
Sbjct: 220 IGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSR 265
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.3 bits (59), Expect = 4.7
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 113 EELETRLRGRGTE------TEDSLRRRLD 135
+ + RL T ++ +RL+
Sbjct: 127 DTMTNRLLQMSRSSLPVDDTTKTIAKRLE 155
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 26.6 bits (59), Expect = 5.1
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 148
G +AGA+Y +V P +E + + +++ + L
Sbjct: 217 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDL 270
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 26.5 bits (59), Expect = 5.3
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETED 128
G +A +Y ++ P+ L R+ E
Sbjct: 213 VGAVLAAILYFYLLFPNSLSLSERVAIIKGTYEP 246
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 26.4 bits (58), Expect = 6.1
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 105 VFVKPPSIEELETRLR------GRGTETEDSLRRRLDLARRDM 141
+ PS E+ T L ET+D L+R + ++
Sbjct: 188 IRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNL 230
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 26.1 bits (58), Expect = 7.1
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 41 ADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMA 100
++ R A G+ L+ + ++ + K R G +A
Sbjct: 136 HEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMV-AHKAAYYTAVAPL-----RLGALLA 189
Query: 101 GA 102
G
Sbjct: 190 GK 191
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 26.2 bits (58), Expect = 7.6
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 104 YVFVKPPSIEELETRLRGRGTETE 127
Y V E ++T LR R E+
Sbjct: 56 YEPVTSGLFEYVDTLLRARSPESS 79
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 25.6 bits (57), Expect = 8.0
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 113 EELETRLRGRGTE------TEDSLRRRLD 135
+ + RL RG +S+++R +
Sbjct: 132 DIMLERLLERGKTSGRSDDNIESIKKRFN 160
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein
structure initiative II (PSI II), structural genomics;
1.95A {Thermotoga maritima}
Length = 142
Score = 25.2 bits (56), Expect = 8.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 100 AGAV-YVFVKPPSIEELETRLRG---RGTETEDSLRRRLD 135
AGAV Y+ +KP ++ L R++ SLR+ ++
Sbjct: 96 AGAVDYI-LKPFRLDYLLERVKKIISSTPRVTVSLRKNIE 134
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 25.5 bits (57), Expect = 8.4
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 104 YVFVKPPSIEELETRLR-------GRGTETEDSLRR---RLDLARR 139
Y+ VKP + EL R++ T + +++ +D+ R
Sbjct: 105 YL-VKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGR 149
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single
chain FV, immune system; 2.67A {Homo sapiens}
Length = 143
Score = 25.2 bits (56), Expect = 8.8
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 92 VKRAGGAMAGAVYVFVKPPSIEELET 117
+K A A + P + +
Sbjct: 104 IKAAADDDDKAGWSH--PQFEKGGGS 127
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 25.9 bits (57), Expect = 8.9
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 148
G +AGA+Y +V P +E + + +++ + L
Sbjct: 256 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDL 309
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A*
1pg8_A* 1ukj_A* 2o7c_A*
Length = 398
Score = 25.6 bits (57), Expect = 9.4
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 14 FGFSVSHTTRGPRPGEVDGKAYHFV---TRADMEERIAAGEFLEHAEFAANLYGTSRAAV 70
F F GE G Y + T +E R+A+ LE E + A+
Sbjct: 38 FTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMAS---LEGGEAGL-ALASGMGAI 93
Query: 71 EAVI 74
+ +
Sbjct: 94 TSTL 97
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 9.6
Identities = 30/176 (17%), Positives = 46/176 (26%), Gaps = 60/176 (34%)
Query: 31 DGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSR---------------AAVEAVIN 75
KA F AG+ + A YG S + VEA I
Sbjct: 976 IPKALRFDRLV-------AGQIPTG--WNAKTYGISDDIISQVDPITLFVLVSVVEAFIA 1026
Query: 76 SGKTCVLDIEVQGVQQVKRA------GGAMAGAVYVFVKPPSIEELETRLRGRGTETEDS 129
SG + + + V + G M G ++ +
Sbjct: 1027 SG----ITDPYEMYKYVHVSEVGNCSGSGMGGV-------SALRGMFKDRFKDE------ 1069
Query: 130 LRRRLD------LARRDMSYGKDSLR--SYGKNSLRSYVEASVSSGNMLKIAFTEI 177
+ D + MS + L S G + V A +S + I I
Sbjct: 1070 -PVQNDILQESFIN--TMSAWVNMLLISSSGPIK--TPVGACATSVESVDIGVETI 1120
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis,
PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A
{Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 25.6 bits (57), Expect = 9.7
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 14 FGFSVSHTTRGPRPGEVDGKAYHFV---TRADMEERIAAGEFLEHAEFAANLYGTSRAAV 70
F F G+ G Y + T +++E +IA LE E + A+
Sbjct: 35 FVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAF---LEKTEACV-ATSSGMGAI 90
Query: 71 EAVI 74
A +
Sbjct: 91 AATV 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,769,872
Number of extensions: 169188
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 73
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)