RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9156
(177 letters)
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 85.3 bits (210), Expect = 9e-22
Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 5 LFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 64
L SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHAE N YG
Sbjct: 22 LLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 81
Query: 65 TSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 124
TSR A+E V+ +G LDI+ QG QQ+++ M A +F+ PPS EL+ RLRGRG
Sbjct: 82 TSREAIEQVLATGVDVFLDIDWQGAQQIRQ---KMPHARSIFILPPSKIELDRRLRGRGQ 138
Query: 125 ETEDSLRRRLDLARRDMSYGKD 146
++E+ + +R+ A +MS+ +
Sbjct: 139 DSEEVIAKRMAQAVAEMSHYAE 160
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 80.4 bits (197), Expect = 5e-20
Identities = 69/145 (47%), Positives = 100/145 (68%), Gaps = 2/145 (1%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
F +YPD FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+F+ N YG++
Sbjct: 22 FAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
A+V+ V SGKTC+LDI++QGV+ VK A ++F+ PPS+E+L+ RL GRGTET
Sbjct: 82 VASVKQVSKSGKTCILDIDMQGVKSVKAI--PELNARFLFIAPPSVEDLKKRLEGRGTET 139
Query: 127 EDSLRRRLDLARRDMSYGKDSLRSY 151
E+S+ +RL A+ +++Y +
Sbjct: 140 EESINKRLSAAQAELAYAETGAHDK 164
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 78.1 bits (191), Expect = 5e-19
Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 3/140 (2%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
FQ++ FGFSVSHTTR PRPGE DGK Y+FVTR M+ IAAG+F+EHAEF+ NLYGTS
Sbjct: 21 FQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS 80
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ AV AV + CVLD+++QGV+ +K+ +Y+FV+PPS++ LE RLR R TET
Sbjct: 81 KEAVRAVQAMNRICVLDVDLQGVRSIKK---TDLCPIYIFVQPPSLDVLEQRLRLRNTET 137
Query: 127 EDSLRRRLDLARRDMSYGKD 146
E+SL +RL AR DM K+
Sbjct: 138 EESLAKRLAAARTDMESSKE 157
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 78.0 bits (191), Expect = 7e-19
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHF-VTRADMEERIAAGEFLEHAEFAANLYGT 65
++PD+FG V HTTR R E+DG+ YHF +R ME+ I A +F+E ++ ++LYGT
Sbjct: 27 LSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGT 86
Query: 66 SRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 125
S +V V GK C+LD+ V++++ A + +F++P S+E + +
Sbjct: 87 SVQSVREVAEQGKHCILDVSANAVRRLQA---AHLHPIAIFIRPRSLENVLEINKRI--- 140
Query: 126 TEDSLRRRLDLARRDMS 142
TE+ R+ D A +
Sbjct: 141 TEEQARKAFDRATKLEQ 157
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 69.9 bits (170), Expect = 4e-16
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 7 FQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 66
+PDRF + + HTTR P+ E +GK Y+FV+ M + I+ E+LE+ +YGT
Sbjct: 24 ITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK 83
Query: 67 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 126
+ + G +LD+E Q ++ ++ A VF+ P+I G
Sbjct: 84 LETIRKIHEQGLIAILDVEPQALKVLRT---AEFAPFVVFIAAPTIT--------PGLNE 132
Query: 127 EDSLRRRLDLAR 138
++SL+R +
Sbjct: 133 DESLQRLQKESD 144
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 58.1 bits (139), Expect = 1e-11
Identities = 59/144 (40%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
Query: 5 LFFQDYPDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANL-- 62
+ P+ FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE L
Sbjct: 21 CLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 79
Query: 63 YGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 122
GT V A +G ++++++ G + +K+ M AV VF+ PPS ++L+ RL GR
Sbjct: 80 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT---MPEAVTVFLAPPSWQDLQARLIGR 136
Query: 123 GTETEDSLRRRLDLARRDMSYGKD 146
GTET D ++RRLD AR +++ D
Sbjct: 137 GTETADVIQRRLDTARIELAAQGD 160
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.2 bits (90), Expect = 8e-05
Identities = 19/129 (14%), Positives = 34/129 (26%), Gaps = 6/129 (4%)
Query: 21 TTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFA----ANLYGTSRAAVEAVINS 76
+T + G D+ I G + + +
Sbjct: 18 STIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKE 77
Query: 77 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136
G +LD V+ A+A ++ V + E R RG ++ DL
Sbjct: 78 GYFVILDGVVRPDWLPAFT--ALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADL 135
Query: 137 ARRDMSYGK 145
+ G
Sbjct: 136 HSQFADLGA 144
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain
{Caulobacter crescentus [TaxId: 155892]}
Length = 139
Score = 32.1 bits (72), Expect = 0.015
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARR 139
R G +GA KP L R+R R D LR+R RR
Sbjct: 90 RIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRR 137
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 27.7 bits (61), Expect = 0.43
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 100 AGAVYVFVKPPSIEELETRL-----RGRGTETEDSLRRRLDL 136
GA KP +EE+E + + + + LRR DL
Sbjct: 93 MGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDL 134
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver
domain {Caulobacter crescentus [TaxId: 155892]}
Length = 153
Score = 27.3 bits (60), Expect = 0.71
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARR 139
G + +P +EL R++ + D LR LD +
Sbjct: 100 MVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLE 147
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 105
Score = 26.7 bits (59), Expect = 0.75
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 56 AEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVF-VKPPSIE- 113
EFA L A + K + + K + Y+F V+ +I
Sbjct: 1 GEFADKL----NEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAM 56
Query: 114 ELETRLRGRGTETEDSLRRRLD 135
LE R R ++ RLD
Sbjct: 57 ALEVTYRERLHRVYREVKNRLD 78
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 27.8 bits (60), Expect = 0.75
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 104 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 143
+ + PS+E L+ G E +D R+++
Sbjct: 37 FRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTL 76
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 26.3 bits (58), Expect = 0.93
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 20/88 (22%)
Query: 37 FVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVLDIEVQGVQQVKRAG 96
F+ D E++ +E A I + + +E G +Q+
Sbjct: 8 FMVHPDQSEQVP--GMIER--------------YTAAITGAEGKIHRLEDWGRRQLAYPI 51
Query: 97 GAMAGAVYVFVK----PPSIEELETRLR 120
+ A YV + I+ELET R
Sbjct: 52 NKLHKAHYVLMNVEAPQEVIDELETTFR 79
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator
TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 120
Score = 26.5 bits (58), Expect = 1.1
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLD 135
GA KP + EL R++ +L R+D
Sbjct: 93 MGADDYVTKPLELRELVVRVK--------NLLWRID 120
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId:
1148]}
Length = 144
Score = 26.6 bits (58), Expect = 1.2
Identities = 2/27 (7%), Positives = 8/27 (29%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLR 120
K ++++L ++
Sbjct: 101 VIASYELHVNCYLTKSRNLKDLFKMVQ 127
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 26.3 bits (57), Expect = 1.4
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 25 PRPGEVDGKAYHFVTRADMEERIAAGEF 52
P ++ ++T + RIAAGE
Sbjct: 123 FNPNDIS--GGEWLTPEHLLARIAAGEA 148
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Length = 149
Score = 26.3 bits (57), Expect = 1.7
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 7/45 (15%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 138
VKP I+ L ++ ++ LD+
Sbjct: 107 IEICYSYSISSYIVKPLEIDRLTETVQTF-------IKYWLDIVV 144
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein
ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 121
Score = 25.7 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLR 120
+ G GA KP + EL R R
Sbjct: 88 KILGLEIGADDYITKPFNPRELTIRAR 114
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 26.4 bits (57), Expect = 1.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 89 VQQVKRAGGAMAGAVYVFVKPPSIEE 114
+Q+ R G M G V + + + +E
Sbjct: 254 IQRRGRTGRHMPGRVIILMAKGTRDE 279
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.8 bits (56), Expect = 2.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
AGA KP I EL+ RLR
Sbjct: 92 AGADDYLSKPFGIGELQARLR 112
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.6 bits (56), Expect = 2.2
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 101 GAVYVFVKPPSIE-----------ELETRLRGRGTETEDSLRRRLD 135
G+V F+KP ++ LE RG G ++LR L
Sbjct: 2 GSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILL 47
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 25.8 bits (56), Expect = 2.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 100 AGAVYVFVKPPSIEELETRLR-----GRGTETEDSLRRRLDLARRDM 141
GA KP + + L R R SLRR + A +
Sbjct: 93 DGAYDFIAKPFAADRLVQSARRAEEKRRLVMENRSLRRAAEAASEGL 139
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Length = 128
Score = 25.7 bits (56), Expect = 2.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDL 136
AGA VKP + LE +L + +L +
Sbjct: 100 AGASGYVVKPFTAATLEEKLN--------KIFEKLGM 128
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2
[TaxId: 382]}
Length = 129
Score = 25.7 bits (56), Expect = 2.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 97 GAMAGAVYVFVKPPSIEELETRLR 120
A GA V KP +IE+++ +
Sbjct: 99 AAALGANNVLAKPFTIEKMKAAIE 122
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 133
Score = 25.4 bits (55), Expect = 2.5
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 138
+G KP +++ ++ L R+ +R
Sbjct: 101 SGMDSCLSKPVTLDVIKQTLT--------LYAERVRKSR 131
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA,
N-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 121
Score = 25.4 bits (55), Expect = 2.6
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 133
AGA VKP + EL R++ LRRR
Sbjct: 94 AGADDYLVKPFVLAELVARVKAL-------LRRR 120
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 25.3 bits (55), Expect = 2.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
GA+ F KP I+E+ ++
Sbjct: 94 LGALTHFAKPFDIDEIRDAVK 114
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga
maritima [TaxId: 2336]}
Length = 122
Score = 25.5 bits (55), Expect = 2.6
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 133
R G GA KP + EL R+R +RR+
Sbjct: 88 RVKGLNMGADDYLPKPFDLRELIARVRAL-------IRRK 120
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Length = 140
Score = 25.4 bits (55), Expect = 2.7
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 7/39 (17%)
Query: 100 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 138
K ++ +L ++G L A
Sbjct: 106 LHVNCYITKSANLSQLFQIVKG-------IEEFWLSTAT 137
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 25.9 bits (56), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 95 AGGAMAGAVYVFVKPPSIEELETRLR 120
G A+A +Y F+ P +L R++
Sbjct: 220 IGAALAVLIYDFILAPRSSDLTDRVK 245
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 25.8 bits (55), Expect = 3.0
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 104 YVFVKPPSIEELETRLRGRGTET---EDSLRRRLDLARRDMSYGKD 146
Y V PPS E + ++ + + + + ++ D
Sbjct: 34 YQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYD 79
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis
[TaxId: 1423]}
Length = 121
Score = 25.0 bits (54), Expect = 3.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLR 120
+ G GA KP S E+ R++
Sbjct: 89 KVLGLELGADDYMTKPFSPREVNARVK 115
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 25.9 bits (56), Expect = 3.2
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 39 TRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTC 80
T +E R+A+ E E A+ G + + ++ G
Sbjct: 60 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEV 101
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 25.1 bits (54), Expect = 3.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
AGA KP IEE+ R++
Sbjct: 93 AGADDYVTKPFHIEEVMARMQ 113
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 24.8 bits (54), Expect = 3.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
GA Y +KP +E L +R
Sbjct: 97 LGASYFILKPFDMENLAHHIR 117
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 25.7 bits (55), Expect = 3.7
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 104 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSY 159
Y ++ P E + RG G ++ D +++ + + +RSY
Sbjct: 35 YKEIRTPIFESTDLFARGVG-DSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSY 89
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 25.3 bits (55), Expect = 3.8
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 23 RGPRPGEVDGKAYHFVTRA---DMEERIAAGEFLEHAEFAAN 61
P V A ++R + +R E LEH AN
Sbjct: 220 EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITAN 261
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 25.3 bits (54), Expect = 4.3
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 104 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 143
+ + P EE + +G G T+ + R
Sbjct: 35 ALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRS 74
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK
{Caulobacter crescentus [TaxId: 155892]}
Length = 123
Score = 24.6 bits (53), Expect = 4.5
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 97 GAMAGAVYVFVKPPSIEELETRLR 120
G KP S+ ++
Sbjct: 93 IREGGCEAYISKPISVVHFLETIK 116
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA,
N-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 117
Score = 24.6 bits (53), Expect = 4.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLR 120
+ G GA KP S EL+ R++
Sbjct: 86 KVIGLELGADDYVTKPFSNRELQARVK 112
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 123
Score = 24.7 bits (53), Expect = 4.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 97 GAMAGAVYVFVKPPSIEELETRLR 120
GA KP I+E +
Sbjct: 93 AYQQGAFDYLPKPFDIDEAVALVE 116
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 24.6 bits (53), Expect = 5.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 94 RAGGAMAGAVYVFVKPPSIEELETRLR 120
+ G V +KP S++ + L
Sbjct: 98 KEKCMSFGLDGVLLKPVSLDNIRDVLS 124
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ,
receiver domain {Rhizobium meliloti [TaxId: 382]}
Length = 123
Score = 24.6 bits (53), Expect = 5.6
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
AGAV KP + +
Sbjct: 96 AGAVDFIEKPFEDTVIIEAIE 116
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 24.5 bits (53), Expect = 5.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
GA KP S +EL R++
Sbjct: 95 TGADDYITKPFSPKELVARIK 115
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 24.6 bits (53), Expect = 5.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
+G KP +L+T L
Sbjct: 101 SGMNGFLSKPIKRPKLKTILT 121
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
2336]}
Length = 118
Score = 24.1 bits (52), Expect = 6.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 100 AGAVYVFVKPPSIEELETRLR 120
AGA VKP + L
Sbjct: 95 AGAKDFIVKPFQPSRVVEALN 115
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 25.0 bits (54), Expect = 7.6
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 119 LRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGKNSLRSYVEASVS 165
L R D L R L Y +D+LR + + YV+ +
Sbjct: 325 LTYRSFCPPDDLADRGLLGVESSFYAQDALRLW--EIISRYVQGIMG 369
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga
maritima [TaxId: 2336]}
Length = 120
Score = 23.8 bits (51), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 97 GAMAGAVYVFVKPPSIEELETRLR 120
G AGA KP + E L R++
Sbjct: 89 GFEAGADDYVTKPFNPEILLARVK 112
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
{Streptoverticillium mobaraense [TaxId: 35621]}
Length = 331
Score = 24.7 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 25 PRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 58
PR GE TRA+ E R+A F E F
Sbjct: 99 PRSGE---------TRAEFEGRVAKESFDEEKGF 123
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 24.2 bits (51), Expect = 8.2
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)
Query: 23 RGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSRAAVEAVINSGKTCVL 82
+ ++G + + + E A N+ + + A + +
Sbjct: 25 QLDNSAYIEGDIINHMVVGGYRPPWESDE--LLALTWKNITDLTVNFLLAQNDVVLDYIA 82
Query: 83 DIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS 142
+ + + + EEL R R + E R L+L S
Sbjct: 83 FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD-EQMGERCLELVEEFES 141
Query: 143 YGKD 146
G D
Sbjct: 142 KGID 145
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 24.8 bits (54), Expect = 8.4
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 63 YGTSRAAVEAV-------INSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFVKPPSIEE 114
Y + AA A + +G V+ E G Q+ + A+ + PP
Sbjct: 296 YLKASAACRAAKLQDCTMLVNGDDLVVICESAGTQEDAASLRVFTEAMTRYSAPPGDPP 354
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator
(NarL), receiver domain {Escherichia coli [TaxId: 562]}
Length = 138
Score = 24.1 bits (52), Expect = 9.5
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 100 AGAVYVFVKPPSIEELETRLR---GRGTETEDSLRRRL 134
GA +K E+L L ++L L
Sbjct: 97 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVL 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,322
Number of extensions: 28518
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 61
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)