BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9158
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10
PE=1 SV=1
Length = 123
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR----- 57
AV S KE+ +S N+L L + L G +T VDLR+ES GR+++VD FMNI +++
Sbjct: 2 AVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTD 61
Query: 58 ----ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
++ + LF+ RNV ++HIP V+I + +E LQ R + G+
Sbjct: 62 RWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGK 110
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus GN=Lsm10
PE=1 SV=1
Length = 122
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 61/109 (55%), Gaps = 9/109 (8%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMS 56
A+ S KE+ +S N+L L + L G IT VDLR+ES GR+++VD FMNI Y
Sbjct: 2 ALSHSVKERTISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTD 61
Query: 57 R---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
R ++ + LF+ RNV ++HIP V I +E LQ R + G+
Sbjct: 62 RWGHQVELDDLFVTGRNVRYVHIPDGVDITATIEQQLQIIHRVRNFGGK 110
>sp|Q54F84|Y1015_DICDI Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium
discoideum GN=DDB_G0291015 PE=4 SV=1
Length = 137
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 15 FNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMS------------RELTFE 62
F +L C+ +L G + LR+ + G + +VD ++NI +S R+ +
Sbjct: 28 FQSLLCVFTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQ 87
Query: 63 SLFIQSRNVMFIHIPRHVSI 82
+ IQSRN+ FI IP + +
Sbjct: 88 EILIQSRNIRFIQIPDKIDL 107
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium
discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 32/118 (27%)
Query: 12 FLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI--------------YMSR 57
F SF KSLVG V+L+N+ S++G L+ VD F+NI YM
Sbjct: 3 FFSF------YKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYM-- 54
Query: 58 ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKRANLMQQE 115
++ ++ FI+ V ++H+P V ++D + + R+ QK+ N QE
Sbjct: 55 -ISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEARE---------QKKQNKQHQE 102
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMS-----------RELTFESLFIQSRNV 71
KSLVG V+L+N+ S+ G L VD ++NI ++ L+ ++ FI+ V
Sbjct: 8 KSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVV 67
Query: 72 MFIHIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKR 108
++ +P D + ++ Q ++ L+QK+
Sbjct: 68 RYVQLP---------ADEVDTQLLQDAARKEALQQKQ 95
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMS-----------RELTFESLFIQSRNV 71
KSLVG V+L+N+ S+ G L VD ++NI ++ L+ ++ FI+ V
Sbjct: 8 KSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVV 67
Query: 72 MFIHIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKR 108
++ +P D + ++ Q ++ L+QK+
Sbjct: 68 RYVQLP---------ADEVDTQLLQDAARKEALQQKQ 95
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMS---------RELTFESLFIQSRNVMFI 74
++G + V L + G L+ VDG+MNI + ++ ++ F++ NVM+I
Sbjct: 21 IIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVMYI 79
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 21 LAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYM----------SRELTFESLFIQSRN 70
L K+ G V+L+N + +G L + D +MNI++ R +++
Sbjct: 6 LLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNT 65
Query: 71 VMFIHIPRHVSIVNKVEDALQSK-PRQSSSAGR 102
+ ++ +P V ++KV++ +S+ R+ GR
Sbjct: 66 IKYLRVPDEV--IDKVQEEAKSRTDRKPPGVGR 96
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFI 74
++G V L + G L+ VDG+MNI + R + ++ FI+ NV++I
Sbjct: 19 IIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGNNVLYI 77
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYM---------SRELTFESLFIQSRNVMFI 74
++G V L + G L+ VDG+MNI + ++ ++ F++ NVM+I
Sbjct: 21 IIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFVRGNNVMYI 79
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYM--SREL-------TFESLFIQSRNVMFI 74
++G V L + G L+ VDG+MNI + S+E ++ FI+ NV++I
Sbjct: 18 IIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIRGNNVLYI 76
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRE---------LTFESLFIQSRNVMFI 74
++G V L + G L+ VDG+MNI + R ++ FI+ NV++I
Sbjct: 19 IIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGNNVLYI 77
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMS---------RELTFESLFIQSRNVMFI 74
++G V L N G L+ VDG+MNI + ++ F++ NVM+I
Sbjct: 21 IIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGNNVMYI 79
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNIYM-----SRELTF------ESLFIQSRNV 71
K+LV V+L+N+ + G L+ VD F+N+ + + E + ++FI+ V
Sbjct: 8 KTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTV 67
Query: 72 MFIHIPRHVSIVNKVEDA 89
++++ +++ N ++DA
Sbjct: 68 RYVYLNKNMVDTNLLQDA 85
>sp|B2VJ29|Y1554_ERWT9 UPF0229 protein ETA_15540 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=ETA_15540 PE=3 SV=1
Length = 425
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 76 IPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKRANLMQQEVLEKIQALKKQKM 128
+P ++S+V ++++L + +S R L + NL++ E E Q L++Q++
Sbjct: 159 VPANISVVRSLQNSLARRTAMTSGKRRRLAELEENLLRVENSEPAQLLEEQRL 211
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYM--SREL-------TFESLFIQSRNVMFI 74
++G V L N G L+ +DG+MNI + ++E + +FI+ NV++I
Sbjct: 24 IIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNNVLYI 82
>sp|Q06406|LSM6_YEAST U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM6 PE=1
SV=2
Length = 86
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELT-FES------------LFIQSRNV 71
++G V L + SGRLE +DGFMN+ +S +ES +F++ V
Sbjct: 19 IIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLRGTQV 78
Query: 72 MFI 74
M+I
Sbjct: 79 MYI 81
>sp|A6ZYX7|LSM6_YEAS7 U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain YJM789) GN=LSM6 PE=3 SV=1
Length = 86
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELT-FES------------LFIQSRNV 71
++G V L + SGRLE +DGFMN+ +S +ES +F++ V
Sbjct: 19 IIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLRGTQV 78
Query: 72 MFI 74
M+I
Sbjct: 79 MYI 81
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMS---------RELTFESLFIQSRNVMFI 74
++G V L N G L+ VDG+MNI + ++ F++ NVM+I
Sbjct: 21 IIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFVRGNNVMYI 79
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMS---------RELTFESLFIQSRNVMFI 74
++G V L + G L+ VDG+MNI + + ++ F++ NVM+I
Sbjct: 21 IIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFVRGNNVMYI 79
>sp|Q7KW39|MMSA_DROME Probable methylmalonate-semialdehyde dehydrogenase [acylating],
mitochondrial OS=Drosophila melanogaster GN=CG17896 PE=2
SV=1
Length = 520
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 56 SRELTFESLFIQSRNVMFI--HIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKRAN--- 110
+ +L + F++S+ +I H P +V +V A Q++ + + + + + +N
Sbjct: 25 TTKLFIDGKFVESKTNEWIDVHDPATNQVVTRVPKATQAEMQAALESNKKAFRSWSNQSI 84
Query: 111 LMQQEVLEKIQALKKQKMAQ 130
L +Q+V+ K+QAL K+ M +
Sbjct: 85 LTRQQVMFKLQALIKENMGE 104
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3
SV=1
Length = 97
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 32 VDLRNESSVSGRLEHVDGFMNI 53
V+L+N+ S+SG L++VD F+NI
Sbjct: 17 VNLKNDISISGILKNVDPFLNI 38
>sp|Q6CPS7|LSM6_KLULA U6 snRNA-associated Sm-like protein LSm6 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=LSM6 PE=3 SV=1
Length = 80
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 19 ACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR 57
++++G V L + G+LE +DGFMN+ MS+
Sbjct: 9 GSFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQ 47
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 24 SLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELT-FES-----------LFIQSRNV 71
+++G V L + G+LE +DGFMN+ +S FES +F++ V
Sbjct: 18 NIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNAHMLKRYENDVFLRGTQV 77
Query: 72 MFI 74
M+I
Sbjct: 78 MYI 80
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNI-------YMSREL--TFESLFIQSRNVMF 73
K +G V L N G LE VDG MNI Y++ +L + F++ NV++
Sbjct: 22 KMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNVLY 81
Query: 74 IHI-PR 78
I PR
Sbjct: 82 ISAQPR 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,043,498
Number of Sequences: 539616
Number of extensions: 1305190
Number of successful extensions: 4084
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4062
Number of HSP's gapped (non-prelim): 40
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)