Query psy9158
Match_columns 133
No_of_seqs 130 out of 642
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:24:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 99.9 4.6E-23 1.6E-27 152.7 9.0 75 17-91 5-88 (126)
2 1d3b_A Protein (small nuclear 99.9 4.2E-22 1.4E-26 134.9 8.4 63 16-78 4-75 (75)
3 4emh_A Probable U6 snRNA-assoc 99.8 1.1E-21 3.8E-26 141.3 6.9 76 14-89 13-98 (105)
4 1b34_A Protein (small nuclear 99.8 2.7E-21 9.2E-26 141.3 7.9 72 18-89 3-83 (119)
5 1i4k_A Putative snRNP SM-like 99.8 1.8E-18 6E-23 116.5 8.3 64 17-80 4-76 (77)
6 3s6n_F Small nuclear ribonucle 99.8 1.9E-18 6.6E-23 119.7 8.4 66 16-81 5-79 (86)
7 1ljo_A Archaeal SM-like protei 99.8 2.5E-18 8.6E-23 116.0 8.3 62 18-79 6-77 (77)
8 1h64_1 SnRNP SM-like protein; 99.8 3.2E-18 1.1E-22 114.8 8.1 63 17-79 4-75 (75)
9 1m5q_A SMAP3, small nuclear ri 99.7 8.7E-18 3E-22 124.9 10.1 74 19-92 2-80 (130)
10 1n9r_A SMF, small nuclear ribo 99.7 4.1E-18 1.4E-22 119.9 7.0 68 12-79 16-93 (93)
11 1th7_A SnRNP-2, small nuclear 99.7 1.4E-17 4.8E-22 113.5 8.0 63 17-79 9-80 (81)
12 4emk_B U6 snRNA-associated SM- 99.7 1.7E-17 5.8E-22 111.7 7.2 62 17-78 4-74 (75)
13 1i8f_A Putative snRNP SM-like 99.7 6.8E-17 2.3E-21 110.2 7.7 62 17-78 11-80 (81)
14 3s6n_G Small nuclear ribonucle 99.7 6.2E-17 2.1E-21 109.3 7.3 62 18-79 5-75 (76)
15 1mgq_A SM-like protein; LSM, R 99.7 1.7E-16 5.8E-21 108.8 7.2 61 14-75 13-82 (83)
16 4emk_A U6 snRNA-associated SM- 99.6 1.9E-15 6.5E-20 106.8 8.1 66 12-77 15-90 (94)
17 3bw1_A SMX4 protein, U6 snRNA- 99.5 1.7E-14 5.9E-19 101.5 7.9 64 17-80 10-89 (96)
18 1b34_B Protein (small nuclear 99.5 1.9E-14 6.5E-19 104.5 8.2 72 9-80 19-115 (118)
19 1d3b_B Protein (small nuclear 99.5 8.7E-15 3E-19 101.2 5.3 61 19-79 6-85 (91)
20 4emg_A Probable U6 snRNA-assoc 99.5 8E-14 2.7E-18 97.7 7.8 63 16-78 8-92 (93)
21 2fwk_A U6 snRNA-associated SM- 99.5 6E-14 2.1E-18 102.4 7.4 69 11-79 22-114 (121)
22 3s6n_E Small nuclear ribonucle 99.5 3.7E-14 1.3E-18 99.6 5.2 62 17-78 16-91 (92)
23 4emk_C U6 snRNA-associated SM- 99.4 1.7E-13 5.6E-18 99.5 7.3 65 16-80 22-102 (113)
24 3pgw_B SM B; protein-RNA compl 99.3 4.3E-12 1.5E-16 102.3 7.6 61 19-79 6-85 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.2 7.9E-06 2.7E-10 56.9 8.6 62 20-81 10-75 (86)
26 3ahu_A Protein HFQ; SM-like mo 95.8 0.011 3.8E-07 40.2 4.4 64 16-82 10-75 (78)
27 1u1s_A HFQ protein; SM-like ba 95.7 0.011 3.7E-07 40.8 4.1 62 18-83 8-71 (82)
28 1kq1_A HFQ, HOST factor for Q 95.7 0.012 4.1E-07 39.9 4.3 62 16-80 6-69 (77)
29 1y96_B Gemin7, SIP3, GEM-assoc 95.5 0.077 2.6E-06 36.7 7.7 59 19-77 21-84 (85)
30 2ylb_A Protein HFQ; RNA-bindin 95.5 0.097 3.3E-06 35.1 7.9 62 16-81 8-71 (74)
31 2qtx_A Uncharacterized protein 95.4 0.021 7.2E-07 38.3 4.4 30 26-55 24-53 (71)
32 4a53_A EDC3; RNA binding prote 95.4 0.019 6.6E-07 42.3 4.5 52 23-76 8-61 (125)
33 2y90_A Protein HFQ; RNA-bindin 93.7 0.23 7.9E-06 35.4 6.8 63 16-82 8-72 (104)
34 3sb2_A Protein HFQ; SM-like, R 93.7 0.081 2.8E-06 36.0 4.2 60 19-82 10-71 (79)
35 2vxe_A CG10686-PA; EDC3, CAR-1 90.2 1.8 6E-05 30.0 7.7 54 25-78 11-83 (88)
36 2fb7_A SM-like protein, LSM-14 90.1 1.4 4.6E-05 31.0 7.1 56 23-78 15-89 (95)
37 2vc8_A Enhancer of mRNA-decapp 89.3 1.3 4.4E-05 30.5 6.4 53 24-76 6-66 (84)
38 2e12_A SM-like motif, hypothet 83.3 1.6 5.6E-05 30.6 4.4 30 16-45 16-46 (101)
39 3hfo_A SSR3341 protein; HFQ, S 79.3 2.7 9.1E-05 27.8 4.2 53 20-74 12-66 (70)
40 3hfn_A ASL2047 protein; HFQ, S 74.9 4.8 0.00016 26.7 4.4 54 19-74 13-68 (72)
41 2rm4_A CG6311-PB, DM EDC3; enh 74.8 19 0.00064 25.4 7.7 52 24-76 9-69 (103)
42 1sg5_A ORF, hypothetical prote 68.2 2.3 8E-05 28.9 1.8 26 22-47 20-45 (86)
43 3uby_A DNA-3-methyladenine gly 67.5 8.1 0.00028 30.4 5.0 39 13-51 11-49 (219)
44 1ycy_A Conserved hypothetical 67.4 24 0.00081 23.2 7.0 58 18-76 7-69 (71)
45 1ib8_A Conserved protein SP14. 62.6 7.9 0.00027 28.7 3.9 35 19-55 97-135 (164)
46 3rux_A BIRA bifunctional prote 57.4 21 0.00072 28.1 5.8 33 25-57 222-254 (270)
47 2eay_A Biotin [acetyl-COA-carb 57.2 9.2 0.00031 29.4 3.6 42 25-68 186-232 (233)
48 3by7_A Uncharacterized protein 52.3 56 0.0019 22.7 6.6 59 31-95 7-89 (100)
49 1bia_A BIRA bifunctional prote 50.0 32 0.0011 27.4 5.8 43 25-68 271-318 (321)
50 2ej9_A Putative biotin ligase; 48.7 41 0.0014 25.7 6.0 32 25-57 190-221 (237)
51 2dxu_A Biotin--[acetyl-COA-car 45.1 14 0.00048 28.5 2.8 30 26-57 188-217 (235)
52 4hcz_A PHD finger protein 1; p 45.1 32 0.0011 21.9 4.1 25 26-50 6-30 (58)
53 2e5p_A Protein PHF1, PHD finge 32.7 66 0.0022 21.1 4.1 25 26-50 12-36 (68)
54 2eqj_A Metal-response element- 28.4 86 0.0029 20.3 4.1 25 26-50 16-40 (66)
55 2xk0_A Polycomb protein PCL; t 26.5 73 0.0025 20.9 3.5 21 26-46 18-38 (69)
56 2m0o_A PHD finger protein 1; t 25.3 39 0.0013 22.8 2.1 26 25-50 28-53 (79)
57 3rkx_A Biotin-[acetyl-COA-carb 22.8 1.3E+02 0.0045 24.0 5.2 32 25-57 277-308 (323)
58 2e5q_A PHD finger protein 19; 22.2 83 0.0028 20.3 3.1 25 26-50 10-34 (63)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.89 E-value=4.6e-23 Score=152.74 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=70.3
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCCCCchhHHH
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRHVSIVNKVE 87 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ld~~~~l~ 87 (133)
...+||+.+.|++|+||||||.+|+|+|.+||+||||+|+| ..+++++|||||+|+||++||+++++++|+
T Consensus 5 ~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~~~l~ 84 (126)
T 2y9a_D 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLK 84 (126)
T ss_dssp CSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSSSHHH
T ss_pred cHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccchHHhh
Confidence 45789999999999999999999999999999999999999 467889999999999999999999999999
Q ss_pred HHHh
Q psy9158 88 DALQ 91 (133)
Q Consensus 88 ~~l~ 91 (133)
++-.
T Consensus 85 ~~~~ 88 (126)
T 2y9a_D 85 SMKN 88 (126)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8654
No 2
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.87 E-value=4.2e-22 Score=134.86 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=59.5
Q ss_pred CcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCC
Q psy9158 16 NTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 16 nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd 78 (133)
....+||+++.|++|+||||||.+|+|+|.++|+|||++|+| ..+++.+||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 356899999999999999999999999999999999999999 467899999999999999997
No 3
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.1e-21 Score=141.28 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=48.0
Q ss_pred ccCcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec----------ccccccEEEecCeeEEEEcCCCCCch
Q psy9158 14 SFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR----------ELTFESLFIQSRNVMFIHIPRHVSIV 83 (133)
Q Consensus 14 ~~nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n----------~~~l~~ifIRGsnIryI~lPd~ld~~ 83 (133)
..|++.+||+.+.|++|+|+|+||..|+|+|.++|.|||+.|+| ...++.+||||++|+||++||++..+
T Consensus 13 ~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~ 92 (105)
T 4emh_A 13 DPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQ 92 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC-------
T ss_pred CCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhh
Confidence 36899999999999999999999999999999999999999999 34689999999999999999999777
Q ss_pred hHHHHH
Q psy9158 84 NKVEDA 89 (133)
Q Consensus 84 ~~l~~~ 89 (133)
+.++++
T Consensus 93 p~~~~~ 98 (105)
T 4emh_A 93 VAKQQA 98 (105)
T ss_dssp ------
T ss_pred hhhhhh
Confidence 777653
No 4
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.84 E-value=2.7e-21 Score=141.29 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=67.1
Q ss_pred HHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCCCCchhHHHH
Q psy9158 18 LACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRHVSIVNKVED 88 (133)
Q Consensus 18 L~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ld~~~~l~~ 88 (133)
+.+||+++.|++|+|+|+||.+|.|+|.++|.||||+|+| ...++.+||||+||+||++||+++++++|.+
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l~~ 82 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVD 82 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHTC-
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhHhh
Confidence 6789999999999999999999999999999999999999 4578999999999999999999999999987
Q ss_pred H
Q psy9158 89 A 89 (133)
Q Consensus 89 ~ 89 (133)
.
T Consensus 83 ~ 83 (119)
T 1b34_A 83 V 83 (119)
T ss_dssp -
T ss_pred h
Confidence 3
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.76 E-value=1.8e-18 Score=116.48 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=58.6
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRHV 80 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~l 80 (133)
....+|+.+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+.||..
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 46789999999999999999999999999999999999999 46789999999999999999864
No 6
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.76 E-value=1.9e-18 Score=119.71 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=59.1
Q ss_pred CcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCCCC
Q psy9158 16 NTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRHVS 81 (133)
Q Consensus 16 nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ld 81 (133)
-....||+.+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+.||.-.
T Consensus 5 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp CCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC---
T ss_pred cCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCccc
Confidence 356789999999999999999999999999999999999999 357899999999999999999753
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.76 E-value=2.5e-18 Score=116.03 Aligned_cols=62 Identities=29% Similarity=0.572 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCeEEEEecCC-cEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCC
Q psy9158 18 LACLAKSLVGMITCVDLRNE-SSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 18 L~~lL~~l~G~~VtVELKNg-~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
+..+|..+.|++|+|+|+|| ..|.|+|.++|.|||+.|+| ...++.+||||++|+||+.||+
T Consensus 6 P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 6 PNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp HHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 56789999999999999999 99999999999999999999 4678999999999999999984
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.75 E-value=3.2e-18 Score=114.83 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
....+|+.+.|++|+|+|+||..|.|+|.++|+|||+.|+| ...++.+||||++|+||+.||+
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 46788999999999999999999999999999999999999 4678999999999999999874
No 9
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.74 E-value=8.7e-18 Score=124.93 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=68.8
Q ss_pred HHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec-----ccccccEEEecCeeEEEEcCCCCCchhHHHHHHhc
Q psy9158 19 ACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQS 92 (133)
Q Consensus 19 ~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~~~l~~ifIRGsnIryI~lPd~ld~~~~l~~~l~~ 92 (133)
..+|+.+.|++|+|+|+||..|.|+|.++|+|||+.|+| ...++.+||||++|+||+.||..-..+.|++++.+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~~~~r 80 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIMYRYIVHIDSTERRIDMREFAKQAEK 80 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTCCEEEEEEECGGGEEEEEECCCCCCHHHHHHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEcCCEeceEEEeCCeEEEEEcCCcccCHHHHHHHHhh
Confidence 468999999999999999999999999999999999999 47789999999999999999998778889988873
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.73 E-value=4.1e-18 Score=119.93 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred hcccCcHHHHHHhcCCCeEEEEecCC-cEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCC
Q psy9158 12 FLSFNTLACLAKSLVGMITCVDLRNE-SSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 12 ~~~~nsL~~lL~~l~G~~VtVELKNg-~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
....-.+.+||+.+.|++|+|+|+|| ..|+|+|.++|+|||+.|+| ...++.+||||++|+||+.|+.
T Consensus 16 ~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~~ 93 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN 93 (93)
T ss_dssp ----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECCC
T ss_pred ccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCCC
Confidence 34445667899999999999999999 99999999999999999999 4678999999999999999874
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.72 E-value=1.4e-17 Score=113.46 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=57.3
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
....+|+.+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+.||.
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 45789999999999999999999999999999999999999 4668999999999999999884
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.71 E-value=1.7e-17 Score=111.72 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=56.8
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd 78 (133)
....||+.+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+..|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 45689999999999999999999999999999999999999 467899999999999998765
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.69 E-value=6.8e-17 Score=110.18 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=56.7
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec--------ccccccEEEecCeeEEEEcCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR--------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n--------~~~l~~ifIRGsnIryI~lPd 78 (133)
....+|..+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+.||
T Consensus 11 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECGGGEEEEEECC
T ss_pred chHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEEcCCcccCCCEEEECCCEEEEEEeCC
Confidence 34567788889999999999999999999999999999999 357899999999999999987
No 14
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.69 E-value=6.2e-17 Score=109.33 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=47.1
Q ss_pred HHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEEcCCC
Q psy9158 18 LACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 18 L~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
...+|+.+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.++|||++|.||+..|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 4578999999999999999999999999999999999999 4678999999999999998774
No 15
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.66 E-value=1.7e-16 Score=108.78 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=54.9
Q ss_pred ccCcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---------ccccccEEEecCeeEEEE
Q psy9158 14 SFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---------ELTFESLFIQSRNVMFIH 75 (133)
Q Consensus 14 ~~nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---------~~~l~~ifIRGsnIryI~ 75 (133)
..++ ..+|..+.|++|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|+||+
T Consensus 13 ~~~P-~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 13 VQRP-LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TTCT-THHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred CcCh-HHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEE
Confidence 4444 457888889999999999999999999999999999999 467899999999999996
No 16
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.61 E-value=1.9e-15 Score=106.76 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=56.4
Q ss_pred hcccCcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec----------ccccccEEEecCeeEEEEcC
Q psy9158 12 FLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR----------ELTFESLFIQSRNVMFIHIP 77 (133)
Q Consensus 12 ~~~~nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n----------~~~l~~ifIRGsnIryI~lP 77 (133)
.........||..+.|+.|+|+|+||..|.|+|.++|.|||+.|+| ...++.+||||++|.||+-.
T Consensus 15 ~~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 15 MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp -----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 3444556789999999999999999999999999999999999999 35689999999999999744
No 17
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-14 Score=101.45 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=56.6
Q ss_pred cHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec---c-------------cccccEEEecCeeEEEEcCCCC
Q psy9158 17 TLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR---E-------------LTFESLFIQSRNVMFIHIPRHV 80 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---~-------------~~l~~ifIRGsnIryI~lPd~l 80 (133)
....+|..+.|++|.|+|+||..|.|+|.++|.|||+.|+| . ..++.+||||++|.||..|+..
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 35678999999999999999999999999999999999999 1 3478999999999999988764
No 18
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.54 E-value=1.9e-14 Score=104.55 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=56.3
Q ss_pred hhhhcccCcHHHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEec---c-----c---------------cccc
Q psy9158 9 KEQFLSFNTLACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSR---E-----L---------------TFES 63 (133)
Q Consensus 9 ~Ek~~~~nsL~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n---~-----~---------------~l~~ 63 (133)
-|-+...-....||..+. |++|.|+|+||..|.|+|.++|.|||++|+| . . .++.
T Consensus 19 ~e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~ 98 (118)
T 1b34_B 19 REEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98 (118)
T ss_dssp -------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEE
T ss_pred hhhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCe
Confidence 344444445666777776 6999999999999999999999999999999 1 0 2889
Q ss_pred EEEecCeeEEEEcCCCC
Q psy9158 64 LFIQSRNVMFIHIPRHV 80 (133)
Q Consensus 64 ifIRGsnIryI~lPd~l 80 (133)
+||||++|.||+.++..
T Consensus 99 v~IRG~nVv~I~~~~~~ 115 (118)
T 1b34_B 99 MFLRGDSVIVVLRNPLI 115 (118)
T ss_dssp EEECGGGEEEEEECCCC
T ss_pred EEEcCCEEEEEEeCchh
Confidence 99999999999998863
No 19
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.52 E-value=8.7e-15 Score=101.21 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec--c-----------------cccccEEEecCeeEEEEcCCC
Q psy9158 19 ACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR--E-----------------LTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 19 ~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n--~-----------------~~l~~ifIRGsnIryI~lPd~ 79 (133)
..+|..+.|++|.|+|+||..|.|+|.++|.|||+.|+| . ..++.+||||++|.||++|+.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 346788999999999999999999999999999999999 1 136889999999999999874
No 20
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.49 E-value=8e-14 Score=97.74 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=55.5
Q ss_pred CcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec-----c-----------------cccccEEEecCeeEE
Q psy9158 16 NTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----E-----------------LTFESLFIQSRNVMF 73 (133)
Q Consensus 16 nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~-----------------~~l~~ifIRGsnIry 73 (133)
.....||+.+.|+.|+|+|+||..|.|+|.++|.|||+.|+| . ..++.+||||++|.+
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 455689999999999999999999999999999999999999 1 236889999999999
Q ss_pred EEcCC
Q psy9158 74 IHIPR 78 (133)
Q Consensus 74 I~lPd 78 (133)
|+-|-
T Consensus 88 I~p~~ 92 (93)
T 4emg_A 88 IAPPR 92 (93)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98653
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.49 E-value=6e-14 Score=102.40 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=58.4
Q ss_pred hhcccCcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec----c--------------------cccccEEE
Q psy9158 11 QFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR----E--------------------LTFESLFI 66 (133)
Q Consensus 11 k~~~~nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n----~--------------------~~l~~ifI 66 (133)
+....-....||..+.|+.|.|+|+||..|.|+|.++|.|||++|+| . ..++.+||
T Consensus 22 ~~~~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~I 101 (121)
T 2fwk_A 22 KGGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILL 101 (121)
T ss_dssp --CCCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEE
T ss_pred ccccccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEE
Confidence 33344566788999999999999999999999999999999999999 1 13688999
Q ss_pred ecCeeEEEEcCCC
Q psy9158 67 QSRNVMFIHIPRH 79 (133)
Q Consensus 67 RGsnIryI~lPd~ 79 (133)
||++|.||+.++.
T Consensus 102 RG~nVv~I~~~~~ 114 (121)
T 2fwk_A 102 SGNNVAMLVPGGD 114 (121)
T ss_dssp CGGGEEEEESSSC
T ss_pred CCCEEEEEEecCC
Confidence 9999999988654
No 22
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.47 E-value=3.7e-14 Score=99.63 Aligned_cols=62 Identities=10% Similarity=0.215 Sum_probs=55.2
Q ss_pred cHHHHHHhcCCCeEEEEe----cCCcEEEEEEEEeccccceEEec----------ccccccEEEecCeeEEEEcCC
Q psy9158 17 TLACLAKSLVGMITCVDL----RNESSVSGRLEHVDGFMNIYMSR----------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 17 sL~~lL~~l~G~~VtVEL----KNg~~~~G~L~~vD~~MNl~L~n----------~~~l~~ifIRGsnIryI~lPd 78 (133)
....||..+.|++|.|+| +||..|.|+|.++|.|||+.|+| ...++.+||||+||.||+-+|
T Consensus 16 ~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred CCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 356788888899999999 99999999999999999999999 356799999999999998765
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.45 E-value=1.7e-13 Score=99.48 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=49.3
Q ss_pred CcHHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec-----c-----------cccccEEEecCeeEEEEcCCC
Q psy9158 16 NTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----E-----------LTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 16 nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~-----------~~l~~ifIRGsnIryI~lPd~ 79 (133)
......|..+.|+.|.|.|+||..|.|+|.++|.|||++|+| . ..++.+||||++|.+|+.+|.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 445566777889999999999999999999999999999999 1 246899999999999998875
Q ss_pred C
Q psy9158 80 V 80 (133)
Q Consensus 80 l 80 (133)
.
T Consensus 102 ~ 102 (113)
T 4emk_C 102 S 102 (113)
T ss_dssp -
T ss_pred c
Confidence 3
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.30 E-value=4.3e-12 Score=102.31 Aligned_cols=61 Identities=10% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec-------------------ccccccEEEecCeeEEEEcCCC
Q psy9158 19 ACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-------------------ELTFESLFIQSRNVMFIHIPRH 79 (133)
Q Consensus 19 ~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-------------------~~~l~~ifIRGsnIryI~lPd~ 79 (133)
...|..+.|+.|.|+|+||.+|.|+|.++|.||||+|+| ...++.+||||+||.||++.+.
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~p 85 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCC
Confidence 356788899999999999999999999999999999999 1246889999999999998654
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.22 E-value=7.9e-06 Score=56.92 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=55.6
Q ss_pred HHHHhcCCCeEEEEecCCcEEEEEEEEec-cccceEEec---ccccccEEEecCeeEEEEcCCCCC
Q psy9158 20 CLAKSLVGMITCVDLRNESSVSGRLEHVD-GFMNIYMSR---ELTFESLFIQSRNVMFIHIPRHVS 81 (133)
Q Consensus 20 ~lL~~l~G~~VtVELKNg~~~~G~L~~vD-~~MNl~L~n---~~~l~~ifIRGsnIryI~lPd~ld 81 (133)
+-+.++.|+.|.|.|.||.+|+|.|.++| ...|+.|.| ...+.-++|-|+.|.-|-+-+.-+
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~~~~~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLEDGSMSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECTTSCEEEEEECGGGEEEEEEEECCC
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecccCCeEEEEEEecceEEEEEEecchh
Confidence 36788999999999999999999999999 999999999 667788999999999998866443
No 26
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.83 E-value=0.011 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=46.0
Q ss_pred CcHHHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCCCc
Q psy9158 16 NTLACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHVSI 82 (133)
Q Consensus 16 nsL~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~ld~ 82 (133)
|-=..||..+. +.+|+|-|.||..++|.+.++|.|+=+.-.+. ..-+|-=.-|..|.....+++
T Consensus 10 nlQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~g---~qqlIYKhAISTI~p~~~v~l 75 (78)
T 3ahu_A 10 NIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEG---KQQLIYKHAISTFAPQKNVQL 75 (78)
T ss_dssp CHHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESSS---CEEEEEGGGEEEEEESSCCCC
T ss_pred ChHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEECC---eeEEEEcceEEEEeecccccc
Confidence 33356777776 88999999999999999999999985443331 123666667777765555544
No 27
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.75 E-value=0.011 Score=40.76 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=47.2
Q ss_pred HHHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCCCch
Q psy9158 18 LACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHVSIV 83 (133)
Q Consensus 18 L~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~ld~~ 83 (133)
=..||..+. +.+|+|-|.||..++|.+.++|.|+=+. ++. ...+|-=.-|..|.-...+++.
T Consensus 8 Qd~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL-~~~---~qqLVYKHAISTI~p~~~v~l~ 71 (82)
T 1u1s_A 8 QDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILL-KNT---VSQMVYKHAISTVVPSRPVRLP 71 (82)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-ESS---SCEEEEGGGEEEEEESSCCCCC
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEE-ecC---ceEEEEeeeeEEEeeccccccc
Confidence 345666665 7899999999999999999999998443 332 5567878888888766656544
No 28
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.73 E-value=0.012 Score=39.90 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=43.6
Q ss_pred CcHHHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCC
Q psy9158 16 NTLACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHV 80 (133)
Q Consensus 16 nsL~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~l 80 (133)
|-=..||+.+. +.+|+|-|.||..++|.+.+.|.|+=|.-.+. ...+|-=.-|.+|.-...+
T Consensus 6 ~lQd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~g---~~qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 6 NIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQG---KQHLIYKHAISTYTVETEG 69 (77)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEETT---EEEEEEGGGEEEEEC----
T ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEECC---eeEEEEeeeEEEEeECccc
Confidence 33356777776 88999999999999999999999985544331 2346667778887544434
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.50 E-value=0.077 Score=36.73 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHhcCCCeEEEEecCCcEEEEEEEEecccc-ceEEec----ccccccEEEecCeeEEEEcC
Q psy9158 19 ACLAKSLVGMITCVDLRNESSVSGRLEHVDGFM-NIYMSR----ELTFESLFIQSRNVMFIHIP 77 (133)
Q Consensus 19 ~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~M-Nl~L~n----~~~l~~ifIRGsnIryI~lP 77 (133)
+.++.++.|++|.+.|+.++.+.|....+|..- |+..++ ....++..+|++-|-.+++.
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~TPiGv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECCTTCCEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCCCcccchhhhhhcCCEEEEEec
Confidence 456677889999999999999999999999765 888888 56678999999999888763
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=95.45 E-value=0.097 Score=35.09 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred CcHHHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCCC
Q psy9158 16 NTLACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHVS 81 (133)
Q Consensus 16 nsL~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~ld 81 (133)
|-=..||+.+. +.+|+|.|.||..++|.+.+.|.|+=+. ++. ...+|-=.-|.+|.-...++
T Consensus 8 ~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL-~~~---~~~LIYKhAIsTI~p~~~v~ 71 (74)
T 2ylb_A 8 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILL-KNT---VSQMVYKHAISTVVPSRPVS 71 (74)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE-ESS---SEEEEEGGGEEEEEESSCCC
T ss_pred ccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEE-ECC---ceEEEEeeeEEEEeEccccc
Confidence 44456777776 7899999999999999999999997443 332 66788888899987655554
No 31
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.39 E-value=0.021 Score=38.28 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=26.3
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccccceEE
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGFMNIYM 55 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~MNl~L 55 (133)
.+.+|+|-|.||..++|.+.++|.|+=+.-
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVK 53 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 477999999999999999999999985443
No 32
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.37 E-value=0.019 Score=42.30 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=40.0
Q ss_pred HhcCCCeEEEEecCCcEEEEEEEEeccccceEE--ecccccccEEEecCeeEEEEc
Q psy9158 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNIYM--SRELTFESLFIQSRNVMFIHI 76 (133)
Q Consensus 23 ~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L--~n~~~l~~ifIRGsnIryI~l 76 (133)
..+.|..|.|+|++|..++|+|..||+. +++| .+.. ....-|+++.|.=+.+
T Consensus 8 sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~-~s~~~I~asdI~DLkV 61 (125)
T 4a53_A 8 ADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLAN-DSTKSIVTKDIKDLRI 61 (125)
T ss_dssp HHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETT-TEEEEEEGGGEEEEEE
T ss_pred HHhcCceEEEEECCCCEeeEEEEeecCC-eeEEeccccc-cccceeecccccceee
Confidence 4578999999999999999999999854 6666 8832 2233888888865544
No 33
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=93.72 E-value=0.23 Score=35.43 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=47.8
Q ss_pred CcHHHHHHhcCC--CeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCCCc
Q psy9158 16 NTLACLAKSLVG--MITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHVSI 82 (133)
Q Consensus 16 nsL~~lL~~l~G--~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~ld~ 82 (133)
|-=..||+.+.. .+|+|-|.||..++|.+.++|.|+=|. ++. ...+|-=.-|.+|.-...+++
T Consensus 8 nlQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL-~~~---kqqLIYKHAISTI~p~~~v~l 72 (104)
T 2y90_A 8 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILL-KNT---VSQMVYKHAISTVVPSRPVSH 72 (104)
T ss_dssp CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-ESS---SEEEEEGGGEEEEEESSCCC-
T ss_pred ccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEE-ECC---ceEEEEeeeeEEEeecccccc
Confidence 333566777654 489999999999999999999998544 332 567888889999976665644
No 34
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=93.71 E-value=0.081 Score=36.03 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=44.6
Q ss_pred HHHHHhcC--CCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEEEcCCCCCc
Q psy9158 19 ACLAKSLV--GMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFIHIPRHVSI 82 (133)
Q Consensus 19 ~~lL~~l~--G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI~lPd~ld~ 82 (133)
..||..+. +.+|+|-|.||..+.|.+.+.|.|+=|. ++. ...+|-=.-|.+|.-...+++
T Consensus 10 d~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~~g---~~qLIYKhAISTI~P~~~v~~ 71 (79)
T 3sb2_A 10 DPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-RNT---VTQMVYKHAISTVVPARAVNL 71 (79)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-ESS---SEEEEEGGGEEEEEESSCCCC
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-ECC---ceEEEEeeeEEEEeecCceec
Confidence 44555553 5679999999999999999999998554 442 245777788888866555554
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=90.17 E-value=1.8 Score=30.00 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=45.9
Q ss_pred cCCCeEEEEecCCcEEEEEEEEecccc-ceEEec------------------ccccccEEEecCeeEEEEcCC
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFM-NIYMSR------------------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~M-Nl~L~n------------------~~~l~~ifIRGsnIryI~lPd 78 (133)
..|+.|.+--+.+..|.|+|.++|..= .+.|.| ..-++.+.-||+-|.-+++-+
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 479999999999999999999999753 677888 345688999999999988755
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=90.05 E-value=1.4 Score=30.98 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=46.5
Q ss_pred HhcCCCeEEEEecCCcEEEEEEEEeccc-cceEEec------------------ccccccEEEecCeeEEEEcCC
Q psy9158 23 KSLVGMITCVDLRNESSVSGRLEHVDGF-MNIYMSR------------------ELTFESLFIQSRNVMFIHIPR 78 (133)
Q Consensus 23 ~~l~G~~VtVELKNg~~~~G~L~~vD~~-MNl~L~n------------------~~~l~~ifIRGsnIryI~lPd 78 (133)
....|+.|.+--|.+..|.|+|..+|.. -.+.|.| ..-++.+.-||+-|.-+.+-+
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 3567999999999999999999999964 4678888 345789999999999988743
No 37
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=89.25 E-value=1.3 Score=30.46 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=42.2
Q ss_pred hcCCCeEEEEecCCc-EEEEEEEEeccc-cceEEec------ccccccEEEecCeeEEEEc
Q psy9158 24 SLVGMITCVDLRNES-SVSGRLEHVDGF-MNIYMSR------ELTFESLFIQSRNVMFIHI 76 (133)
Q Consensus 24 ~l~G~~VtVELKNg~-~~~G~L~~vD~~-MNl~L~n------~~~l~~ifIRGsnIryI~l 76 (133)
...|..|.|+.+++. .|.|.|..+|.. =|++|.+ +....++.++++-|.=+-|
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEETTEECSSSEEEEEGGGCSEEEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhhCCCCCCCcEEEEEecChhheEE
Confidence 457999999999999 999999999975 4788888 3444678888887654443
No 38
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=83.27 E-value=1.6 Score=30.64 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=25.9
Q ss_pred CcHHHHHHhcCCC-eEEEEecCCcEEEEEEE
Q psy9158 16 NTLACLAKSLVGM-ITCVDLRNESSVSGRLE 45 (133)
Q Consensus 16 nsL~~lL~~l~G~-~VtVELKNg~~~~G~L~ 45 (133)
-+|..|+..|.|+ .|.++|.+|+.+.|++.
T Consensus 16 a~Le~~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 16 ATLEHWVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHHHHHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHHHHHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 3577888888887 69999999999999974
No 39
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=79.33 E-value=2.7 Score=27.84 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHhc--CCCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEE
Q psy9158 20 CLAKSL--VGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFI 74 (133)
Q Consensus 20 ~lL~~l--~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI 74 (133)
.++++. ...+|+|+|-||..+.|.|..-|.+-=|. .+.. -..+.|--.-|-||
T Consensus 12 R~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L-~~~~-~~~~LI~r~AI~~I 66 (70)
T 3hfo_A 12 RQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGL-VDDS-ERSTIVRLAAIAYI 66 (70)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE-ECTT-CCEEEEEGGGEEEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEE-EcCC-CCeEEEEeeeeEEE
Confidence 344444 25789999999999999999999986444 3311 13456666677776
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=74.93 E-value=4.8 Score=26.73 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHhc--CCCeEEEEecCCcEEEEEEEEeccccceEEecccccccEEEecCeeEEE
Q psy9158 19 ACLAKSL--VGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTFESLFIQSRNVMFI 74 (133)
Q Consensus 19 ~~lL~~l--~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n~~~l~~ifIRGsnIryI 74 (133)
+.++++. ...+|.|+|-||..+.|.|.--|.+-=|.-.+.. ..+.|--.-|-||
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~~~--~~~LI~R~AI~~I 68 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADENS--RQTTIWKQAIAYL 68 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC-----CEEEEEGGGEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcCCC--CeEEEEeeeeEEE
Confidence 3445555 3578999999999999999999998644433321 3466766677776
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=74.83 E-value=19 Score=25.42 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=43.3
Q ss_pred hcCCCeEEEEecCCc-EEEEEEEEeccccceEEec--------ccccccEEEecCeeEEEEc
Q psy9158 24 SLVGMITCVDLRNES-SVSGRLEHVDGFMNIYMSR--------ELTFESLFIQSRNVMFIHI 76 (133)
Q Consensus 24 ~l~G~~VtVELKNg~-~~~G~L~~vD~~MNl~L~n--------~~~l~~ifIRGsnIryI~l 76 (133)
...|..|+|...+.. .|+|.+..+|. =+++|.+ .....++.+++.-|.-+-|
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrNGiplk~~~~EVtLsa~DI~~L~I 69 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDL 69 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEETTEECSCSSSCEEEETTTEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhcCcCcCCCCceEEEEecchhheee
Confidence 346999999999998 99999999995 4588888 4456789999998887655
No 42
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=68.21 E-value=2.3 Score=28.86 Aligned_cols=26 Identities=4% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHhcCCCeEEEEecCCcEEEEEEEEe
Q psy9158 22 AKSLVGMITCVDLRNESSVSGRLEHV 47 (133)
Q Consensus 22 L~~l~G~~VtVELKNg~~~~G~L~~v 47 (133)
+.++.+.+|.|+|+||..+.|+...+
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a~D~ 45 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKASDL 45 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESSCEE
T ss_pred HHHHcCCeEEEEEeCCCEEEEEEEee
Confidence 45678999999999999999976543
No 43
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=67.48 E-value=8.1 Score=30.39 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=34.6
Q ss_pred cccCcHHHHHHhcCCCeEEEEecCCcEEEEEEEEecccc
Q psy9158 13 LSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFM 51 (133)
Q Consensus 13 ~~~nsL~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~M 51 (133)
++..+-..+-+.|.|+.++.++-+|..+.|.|++++.|+
T Consensus 11 Ff~r~~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 11 FFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHCSCHHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHCCCHHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 344677888999999999999999999999999999998
No 44
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=67.45 E-value=24 Score=23.24 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCeEEEEecCCcEEEEEEEEeccccceEEec-----ccccccEEEecCeeEEEEc
Q psy9158 18 LACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----ELTFESLFIQSRNVMFIHI 76 (133)
Q Consensus 18 L~~lL~~l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~~~l~~ifIRGsnIryI~l 76 (133)
|.--|..-+|++|-|-.-.+.++.|+|..+|.-. +.|+| -.+-.++.|+=.-|-+|.+
T Consensus 7 LdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GNk~k~liv~idDinWimL 69 (71)
T 1ycy_A 7 LEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGNRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEEEEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhccccceeEEEeccceEEEe
Confidence 4556778899999999999999999999999875 45566 2333455555555655544
No 45
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=62.59 E-value=7.9 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHhcCCCeEEEEec----CCcEEEEEEEEeccccceEE
Q psy9158 19 ACLAKSLVGMITCVDLR----NESSVSGRLEHVDGFMNIYM 55 (133)
Q Consensus 19 ~~lL~~l~G~~VtVELK----Ng~~~~G~L~~vD~~MNl~L 55 (133)
..|- ...|+.|.|.|+ +...+.|+|.++|+.. ++|
T Consensus 97 ~df~-r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 97 DAVA-GAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp HHHH-HHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred HHHH-HhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 3444 466999999994 4489999999999763 444
No 46
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=57.41 E-value=21 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.6
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccccceEEec
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR 57 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n 57 (133)
..|+.|+|.+.+|..+.|+...+|..=.+.++.
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 359999999988999999999999998888876
No 47
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=57.23 E-value=9.2 Score=29.40 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=32.5
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccccceEEec-----ccccccEEEec
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----ELTFESLFIQS 68 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~~~l~~ifIRG 68 (133)
..|+.|+|...++ +.|+...+|..=.+.+.+ ....+++.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEETTEEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEECCCeEEEEEeEEEEec
Confidence 3699999987766 999999999998888875 23446676665
No 48
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=52.26 E-value=56 Score=22.73 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=42.2
Q ss_pred EEEecCCcEEEEEEEEeccccceEEec------------------------ccccccEEEecCeeEEEEcCCCCCchhHH
Q psy9158 31 CVDLRNESSVSGRLEHVDGFMNIYMSR------------------------ELTFESLFIQSRNVMFIHIPRHVSIVNKV 86 (133)
Q Consensus 31 tVELKNg~~~~G~L~~vD~~MNl~L~n------------------------~~~l~~ifIRGsnIryI~lPd~ld~~~~l 86 (133)
.|.|++|..+-|.+..-|+. +.++| ...-+.+.||...|.++.=+.+ +.+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~----eVi 80 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD----DII 80 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH----HHH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH----HHH
Confidence 68999999999999988874 77777 1224689999999999987642 344
Q ss_pred HHHHhcCCC
Q psy9158 87 EDALQSKPR 95 (133)
Q Consensus 87 ~~~l~~~~r 95 (133)
.++-++..+
T Consensus 81 ~~Y~~~~~~ 89 (100)
T 3by7_A 81 KSYESHTSE 89 (100)
T ss_dssp HHHHHTC--
T ss_pred HHHHcCCce
Confidence 554444333
No 49
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=49.98 E-value=32 Score=27.39 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=32.5
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccccceEEec-----ccccccEEEec
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR-----ELTFESLFIQS 68 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n-----~~~l~~ifIRG 68 (133)
..|+.|+|...++ .+.|+...+|..=.+.+.+ ....+++.+|+
T Consensus 271 ~~g~~V~v~~~~~-~~~G~~~gid~~G~L~v~~~~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIGDK-EIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEETTE-EEEEEEEEECTTSCEEEEETTEEEEESSCEEEEC-
T ss_pred hcCCEEEEEECCc-EEEEEEEEECCCCeEEEEECCCEEEEEeeeEEEec
Confidence 3699999997654 7999999999998888876 33346666553
No 50
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=48.65 E-value=41 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=28.2
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccccceEEec
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR 57 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n 57 (133)
..|+.|+|...++..+.|+...+|..=.+. .+
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999988877999999999988887 65
No 51
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=45.15 E-value=14 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccccceEEec
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGFMNIYMSR 57 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n 57 (133)
.|+.|+|...++ +.|+...+|..=.+.+.+
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 699999998877 999999999998888875
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=45.14 E-value=32 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccc
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGF 50 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~ 50 (133)
.|.-|.+.-.||.-|-|++..||..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5899999999999999999999865
No 53
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.75 E-value=66 Score=21.09 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccc
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGF 50 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~ 50 (133)
+|+-|+..=.+|..|-|++..||..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5899999999999999999999965
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.40 E-value=86 Score=20.33 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccc
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGF 50 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~ 50 (133)
+|..|...=.+|..|-|++.+|+..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5889999999999999999999974
No 55
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=26.46 E-value=73 Score=20.91 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=19.0
Q ss_pred CCCeEEEEecCCcEEEEEEEE
Q psy9158 26 VGMITCVDLRNESSVSGRLEH 46 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~ 46 (133)
.|+-|.+.-.||.-|-|+++.
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd 38 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIID 38 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEE
T ss_pred cCCeEEEEecCCCEEEEEEEe
Confidence 589999999999999999943
No 56
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.29 E-value=39 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.6
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccc
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGF 50 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~ 50 (133)
-.|+-|.+.-.+|..|=|++..||..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 36999999999999999999999965
No 57
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=22.78 E-value=1.3e+02 Score=24.00 Aligned_cols=32 Identities=6% Similarity=-0.027 Sum_probs=26.4
Q ss_pred cCCCeEEEEecCCcEEEEEEEEeccccceEEec
Q psy9158 25 LVGMITCVDLRNESSVSGRLEHVDGFMNIYMSR 57 (133)
Q Consensus 25 l~G~~VtVELKNg~~~~G~L~~vD~~MNl~L~n 57 (133)
..|+.|+|... +..+.|+...+|..=.+.+++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 46999999875 457999999999998888875
No 58
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.24 E-value=83 Score=20.30 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCcEEEEEEEEeccc
Q psy9158 26 VGMITCVDLRNESSVSGRLEHVDGF 50 (133)
Q Consensus 26 ~G~~VtVELKNg~~~~G~L~~vD~~ 50 (133)
+|+-|+..=.+|..|-|++..||..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5889999999999999999999975
Done!