Your job contains 1 sequence.
>psy9158
MTAVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELT
FESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKRANLMQQEVLEKI
QALKKQKMAQGVM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9158
(133 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q969L4 - symbol:LSM10 "U7 snRNA-associated Sm-l... 177 1.3e-13 1
UNIPROTKB|E2R7Q3 - symbol:LSM10 "Uncharacterized protein"... 174 2.7e-13 1
RGD|1584914 - symbol:Lsm10 "LSM10, U7 small nuclear RNA a... 172 4.4e-13 1
UNIPROTKB|A4IFN1 - symbol:LSM10 "Uncharacterized protein"... 171 5.6e-13 1
MGI|MGI:2151045 - symbol:Lsm10 "U7 snRNP-specific Sm-like... 171 5.6e-13 1
UNIPROTKB|E1BY33 - symbol:LSM10 "Uncharacterized protein"... 161 6.4e-12 1
FB|FBgn0033554 - symbol:Lsm10 "Lsm10" species:7227 "Droso... 158 1.3e-11 1
DICTYBASE|DDB_G0291015 - symbol:DDB_G0291015 "putative sm... 98 3.0e-05 1
DICTYBASE|DDB_G0281779 - symbol:lsm2 "putative U6 small n... 92 0.00013 1
>UNIPROTKB|Q969L4 [details] [associations]
symbol:LSM10 "U7 snRNA-associated Sm-like protein LSm10"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 EMBL:AF394685 INTERPRO:IPR001163 GO:GO:0008380
Reactome:REACT_1675 GO:GO:0006397 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 Pfam:PF01423 GO:GO:0008334
EMBL:BC007623 IPI:IPI00056416 RefSeq:NP_116270.1 UniGene:Hs.603131
ProteinModelPortal:Q969L4 SMR:Q969L4 IntAct:Q969L4
MINT:MINT-1485790 STRING:Q969L4 PhosphoSite:Q969L4 DMDM:20177959
PRIDE:Q969L4 Ensembl:ENST00000315732 GeneID:84967 KEGG:hsa:84967
UCSC:uc001cao.1 CTD:84967 GeneCards:GC01M036856 HGNC:HGNC:17562
HPA:HPA048469 neXtProt:NX_Q969L4 PharmGKB:PA134977215
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
InParanoid:Q969L4 OMA:WGHQVEL OrthoDB:EOG4HQDKT PhylomeDB:Q969L4
ChiTaRS:LSM10 GenomeRNAi:84967 NextBio:75496 Bgee:Q969L4
CleanEx:HS_LSM10 Genevestigator:Q969L4 GermOnline:ENSG00000181817
GO:GO:0005683 GO:GO:0071208 Uniprot:Q969L4
Length = 123
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 43/109 (39%), Positives = 63/109 (57%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMS 56
AV S KE+ +S N+L L + L G +T VDLR+ES GR+++VD FMNI Y
Sbjct: 2 AVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTD 61
Query: 57 R---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
R ++ + LF+ RNV ++HIP V+I + +E LQ R + G+
Sbjct: 62 RWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGK 110
>UNIPROTKB|E2R7Q3 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0005683
"U7 snRNP" evidence=IEA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
OMA:WGHQVEL GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:AAEX03009635 RefSeq:XP_532561.1 ProteinModelPortal:E2R7Q3
Ensembl:ENSCAFT00000005422 GeneID:475335 KEGG:cfa:475335
NextBio:20851186 Uniprot:E2R7Q3
Length = 123
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 44/111 (39%), Positives = 63/111 (56%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMS 56
AV S KE+ +S N+L L + L G +T VDLR+ES GR+++VD FMNI Y
Sbjct: 2 AVSHSVKERTISENSLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTD 61
Query: 57 R---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQ--SKPRQSSSAGR 102
R ++ + LF+ RNV ++HIP V+I +E LQ + R S G+
Sbjct: 62 RWGHQVELDDLFVTGRNVRYVHIPDDVNITATIEQQLQVIHRVRNFGSKGQ 112
>RGD|1584914 [details] [associations]
symbol:Lsm10 "LSM10, U7 small nuclear RNA associated"
species:10116 "Rattus norvegicus" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA;ISO] [GO:0005683 "U7 snRNP"
evidence=IEA;ISO] [GO:0015030 "Cajal body" evidence=IEA;ISO]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA;ISO]
RGD:1584914 INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473968 Pfam:PF01423
CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:BC166902 IPI:IPI00369107 RefSeq:NP_001102446.1 UniGene:Rn.3612
STRING:B2RYU1 Ensembl:ENSRNOT00000035637 GeneID:366468
KEGG:rno:366468 UCSC:RGD:1584914 NextBio:689468
Genevestigator:B2RYU1 Uniprot:B2RYU1
Length = 122
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 43/109 (39%), Positives = 62/109 (56%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMS 56
A+ S KE+ +S N+L L + L G IT VDLR+ES GR+++VD FMNI Y
Sbjct: 2 ALSHSVKERTISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTD 61
Query: 57 R---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
R ++ + LF+ RNV ++HIP V+I +E LQ R + G+
Sbjct: 62 RWGHQVELDDLFVTGRNVRYVHIPDGVNITATIEQQLQIIHRVRNFGGK 110
>UNIPROTKB|A4IFN1 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 EMBL:DAAA02009202 EMBL:BC134669
IPI:IPI00709521 RefSeq:NP_001077250.1 UniGene:Bt.13478
STRING:A4IFN1 Ensembl:ENSBTAT00000033237 GeneID:618089
KEGG:bta:618089 InParanoid:A4IFN1 NextBio:20900995 Uniprot:A4IFN1
Length = 122
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 4 VFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMSR 57
V S KE+ +S N+L L + L G +T VDLR+ES GR+++VD FMNI Y R
Sbjct: 3 VSHSVKERTISENSLIILLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAQVTYTDR 62
Query: 58 ---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQ 91
++ + LF+ RNV ++HIP +V+I +E LQ
Sbjct: 63 WGHQVELDDLFVTGRNVRYVHIPDNVNITATIEQQLQ 99
>MGI|MGI:2151045 [details] [associations]
symbol:Lsm10 "U7 snRNP-specific Sm-like protein LSM10"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=ISO] [GO:0017069 "snRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071208 "histone
pre-mRNA DCP binding" evidence=IDA] MGI:MGI:2151045
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0015030
GO:GO:0000084 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017069
Pfam:PF01423 CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640
HOVERGEN:HBG052366 OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683
GO:GO:0071208 EMBL:BC024543 EMBL:BC026476 IPI:IPI00154076
RefSeq:NP_001156738.1 RefSeq:NP_620046.1 UniGene:Mm.41865
ProteinModelPortal:Q8QZX5 SMR:Q8QZX5 STRING:Q8QZX5
PhosphoSite:Q8QZX5 PRIDE:Q8QZX5 Ensembl:ENSMUST00000055575
Ensembl:ENSMUST00000179323 GeneID:116748 KEGG:mmu:116748
GeneTree:ENSGT00510000048364 InParanoid:Q8QZX5 NextBio:369080
Bgee:Q8QZX5 CleanEx:MM_LSM10 Genevestigator:Q8QZX5
GermOnline:ENSMUSG00000050188 InterPro:IPR006649 SMART:SM00651
Uniprot:Q8QZX5
Length = 122
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 43/109 (39%), Positives = 61/109 (55%)
Query: 3 AVFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNI------YMS 56
A+ S KE+ +S N+L L + L G IT VDLR+ES GR+++VD FMNI Y
Sbjct: 2 ALSHSVKERTISENSLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTD 61
Query: 57 R---ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
R ++ + LF+ RNV ++HIP V I +E LQ R + G+
Sbjct: 62 RWGHQVELDDLFVTGRNVRYVHIPDGVDITATIEQQLQIIHRVRNFGGK 110
>UNIPROTKB|E1BY33 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 OMA:WGHQVEL
GO:GO:0005683 GO:GO:0071208 GeneTree:ENSGT00510000048364
InterPro:IPR006649 SMART:SM00651 EMBL:AADN02043869 IPI:IPI00598760
Ensembl:ENSGALT00000003324 Uniprot:E1BY33
Length = 122
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 41/109 (37%), Positives = 63/109 (57%)
Query: 4 VFDSPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMSRELTF-- 61
V S KE+ ++ N+L L + L G +T VDLR+ES+ +GR+ +VD FMN+ ++ E+TF
Sbjct: 3 VSHSVKERTIAENSLVILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLA-EVTFTD 61
Query: 62 --------ESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSAGR 102
+ +F+ RNV ++HIP V I +E LQ+ R GR
Sbjct: 62 RRGEVSQLDEIFVTGRNVRYVHIPDEVDIRATIERQLQAIHRVRYFGGR 110
>FB|FBgn0033554 [details] [associations]
symbol:Lsm10 "Lsm10" species:7227 "Drosophila melanogaster"
[GO:0035363 "histone locus body" evidence=IDA] [GO:0071254
"cytoplasmic U snRNP body" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IMP] [GO:0006397 "mRNA processing" evidence=IDA]
INTERPRO:IPR001163 EMBL:AE013599 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006398 Pfam:PF01423 CTD:84967 eggNOG:NOG146625 GO:GO:0071254
GO:GO:0035363 RefSeq:NP_610615.1 UniGene:Dm.30962
ProteinModelPortal:A1Z8C4 SMR:A1Z8C4 PRIDE:A1Z8C4
EnsemblMetazoa:FBtr0088248 GeneID:36141 KEGG:dme:Dmel_CG12938
UCSC:CG12938-RA FlyBase:FBgn0033554 InParanoid:A1Z8C4 OMA:GHMTCEL
OrthoDB:EOG4CNP7Z PhylomeDB:A1Z8C4 GenomeRNAi:36141 NextBio:797055
Bgee:A1Z8C4 Uniprot:A1Z8C4
Length = 141
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 42/135 (31%), Positives = 70/135 (51%)
Query: 7 SPKEQFLSFNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMN------IYMSR--- 57
S +E++L NTL C L G +DL NE+SV+G ++ DG M +++ R
Sbjct: 5 SAREKYLVSNTLNCWPVMLQGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGG 64
Query: 58 ELTFESLFIQSRNVMFIHIPRHVSIVNKVEDALQS----KPRQSSSAG-RTLKQKRANLM 112
+ F+ +++R + IHIP ++ ++ A++ + R + G RT KQKRA +
Sbjct: 65 QHPFDHFMVRNRMIRQIHIPSYLDAEQELRSAMERGVLRRKRVETKGGKRTFKQKRAEVR 124
Query: 113 QQEVLEKIQALKKQK 127
+E L+ I KK K
Sbjct: 125 HKETLQMISQQKKNK 139
>DICTYBASE|DDB_G0291015 [details] [associations]
symbol:DDB_G0291015 "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0291015 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AAFI02000174 Pfam:PF01423 eggNOG:NOG146625
InterPro:IPR027141 PANTHER:PTHR23338 HSSP:P62314 RefSeq:XP_635453.1
ProteinModelPortal:Q54F84 EnsemblProtists:DDB0233401 GeneID:8627953
KEGG:ddi:DDB_G0291015 InParanoid:Q54F84 OMA:ITIQLRS Uniprot:Q54F84
Length = 137
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 6 DSPKEQFLS--FNTLACLAKSLVGMITCVDLRNESSVSGRLEHVDGFMNIYMS-RELT-- 60
++ K++F++ F +L C+ +L G + LR+ + G + +VD ++NI +S +LT
Sbjct: 17 NNSKKKFIAKEFQSLLCVFTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNT 76
Query: 61 ---------FESLFIQSRNVMFIHIPRHVSIVNKVEDALQSKPRQSSSA-GRTLKQ 106
+ + IQSRN+ FI IP + + N + + QS RTL++
Sbjct: 77 RYKNKRDEHVQEILIQSRNIRFIQIPDKIDL-NSLLYLYSKQLSQSKKKYERTLRK 131
>DICTYBASE|DDB_G0281779 [details] [associations]
symbol:lsm2 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 dictyBase:DDB_G0281779 INTERPRO:IPR001163
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
RefSeq:XP_640635.1 ProteinModelPortal:Q54TF6 STRING:Q54TF6
EnsemblProtists:DDB0233376 GeneID:8623246 KEGG:ddi:DDB_G0281779
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 Uniprot:Q54TF6
Length = 117
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 23 KSLVGMITCVDLRNESSVSGRLEHVDGFMNIYM-----SRE------LTFESLFIQSRNV 71
KSLVG V+L+N+ S++G L+ VD F+NI + + E ++ ++ FI+ V
Sbjct: 8 KSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVV 67
Query: 72 MFIHIPRHVSIVNKVEDALQSKPRQSSSAGRTLKQKRAN 110
++H+P V ++D + + R+ + Q++ N
Sbjct: 68 RYVHLPAEDVDVETLQDHSRLEAREQKKQNKQ-HQEQTN 105
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.130 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 133 133 0.00091 102 3 10 22 0.50 30
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 569 (61 KB)
Total size of DFA: 145 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.09u 0.10s 23.19t Elapsed: 00:00:01
Total cpu time: 23.09u 0.10s 23.19t Elapsed: 00:00:01
Start: Thu Aug 15 16:13:35 2013 End: Thu Aug 15 16:13:36 2013