BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9159
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 73 KACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG-ICVGANGQFQS 131
KA H L +K +++DKE L E +KA E+ S +G I + S
Sbjct: 9 KASHILIKVKSKKSDKEG-----LDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGS 63
Query: 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175
K+ + G V + Q +K + A L+ LK E+ K SF
Sbjct: 64 AKKDGELGYVLKGQTDKDFEKA-----LFKLKDGEVSEVVKSSF 102
>pdb|1NDO|B Chain B, Napthalene 1,2-Dioxygenase
pdb|1NDO|D Chain D, Napthalene 1,2-Dioxygenase
pdb|1NDO|F Chain F, Napthalene 1,2-Dioxygenase
pdb|1EG9|B Chain B, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|B Chain B, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|B Chain B, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|B Chain B, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|B Chain B, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|B Chain B, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|B Chain B, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|B Chain B, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|B Chain B, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMJ|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HMK|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HML|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMM|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMN|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene.
pdb|2HMO|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 194
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170
W CVG+ Q+Q + +++ R ++N+A+ + ++F LK R ++++
Sbjct: 53 WLEHCVGSEVQYQVISRELRAASERRYKLNEAMNVYNENFQ--QLKVRVEHQL 103
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
Y +EL+ PN+ + Y L A + D + IEY +KA+EL P
Sbjct: 32 YQKALELD---PNNAEAWYNLGNAYYKQGDYD--------------EAIEYYQKALELDP 74
Query: 111 NNSNTQKWYGIC 122
NN+ + WY +
Sbjct: 75 NNA--EAWYNLG 84
>pdb|2FBD|A Chain A, The Crystallographic Structure Of The Digestive Lysozyme 1
From Musca Domestica At 1.90 Ang.
pdb|2FBD|B Chain B, The Crystallographic Structure Of The Digestive Lysozyme 1
From Musca Domestica At 1.90 Ang.
pdb|2H5Z|A Chain A, Crystallographic Structure Of Digestive Lysozyme 1 From
Musca Domestica Bound To Chitotetraose At 1.92 A
Resolution
pdb|2H5Z|B Chain B, Crystallographic Structure Of Digestive Lysozyme 1 From
Musca Domestica Bound To Chitotetraose At 1.92 A
Resolution
Length = 122
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 100 EYAKKAMELAPNNSNTQKWYGI--------CVGANGQFQSLKEKIKCGVVFRDQMNKAIQ 151
E + + + P NSN YGI C +NG+F + + C + D ++ ++
Sbjct: 32 ESSYRTNVVGPTNSNGSNDYGIFQINNYYWCQPSNGRFSYNECHLSCDALLTDNISNSVT 91
Query: 152 MAPK 155
A K
Sbjct: 92 CARK 95
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 19/69 (27%)
Query: 51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110
Y +EL+ PN+ Y L A + D ++ IEY +KA+EL P
Sbjct: 32 YQKALELD---PNNASAWYNLGNAYYKQGDYQK--------------AIEYYQKALELDP 74
Query: 111 NNSNTQKWY 119
NN+ WY
Sbjct: 75 NNAKA--WY 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,196,978
Number of Sequences: 62578
Number of extensions: 273551
Number of successful extensions: 604
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 23
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)