BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9159
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BSE0|RMD2_MOUSE Regulator of microtubule dynamics protein 2 OS=Mus musculus
GN=Rmdn2 PE=2 SV=1
Length = 410
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 3/207 (1%)
Query: 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAK 103
+ K +++ L + K + + L+RLA+A +YD+ +K+ Y G +
Sbjct: 193 ESHKMESFELLCDHKEKFSEETEFLWRLARAYGDMYDLSTSTQEKK---HYANIGKTLGE 249
Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
+A+ AP N + WY + G +F+ L+ KI CG +F+ + AIQ+ P++ LY LK
Sbjct: 250 RAITRAPMNGHCHLWYAVLCGYVSEFEGLQNKINCGHLFKKHLEIAIQLLPEEPLLYYLK 309
Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
GRY Y +S+LS+ E+K+A + ++ T +A+ N LK EEL P N + AKCY+
Sbjct: 310 GRYCYTVSRLSWIEKKMAATLFGEIPYSTVHEALHNFLKTEELQPGYSMSNYMYTAKCYV 369
Query: 224 EAGEYAKAVQWLDKAKAIPVVSYESHD 250
E GE +A ++ + A +PVV+ E D
Sbjct: 370 ELGEPQEACKFCNLALLLPVVTKEDKD 396
>sp|Q498D5|RMD2_RAT Regulator of microtubule dynamics protein 2 OS=Rattus norvegicus
GN=Rmdn2 PE=2 SV=1
Length = 412
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 3/204 (1%)
Query: 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
K +++ L + K + + L+RL +A +YD+ +K+ Y G ++A+
Sbjct: 198 KMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKK---HYANVGKTLGERAI 254
Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
AP N + WY + G +F+ L+ KI CG +F+ ++ AIQ+ P++ LY LKGRY
Sbjct: 255 TRAPMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRY 314
Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
Y +SKLS+ E+K+A + ++ T +A+ N LK EEL P N + +AKCY++ G
Sbjct: 315 CYTVSKLSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLG 374
Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
E +A ++ + A +P+V+ E D
Sbjct: 375 ESREAWKFCNLALLLPIVTKEDKD 398
>sp|Q0P4W3|RMD2_XENTR Regulator of microtubule dynamics protein 2 OS=Xenopus tropicalis
GN=rmdn2 PE=2 SV=1
Length = 412
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 3/209 (1%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G + DK + + ++ K N + L+RLA+A ++D+ +D E + Y G
Sbjct: 193 GSEPDKQDTFRMMLDNKEKYGNKVEFLWRLARAYGDMFDMT---SDVEEKKNYAANGKSI 249
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
A KA++L ++ + +W+ I G +++S+++KIK G +F++ ++KAI++ PKD Y
Sbjct: 250 AGKAIQLEDCSAESHRWFAIMCGYLSEYESVQDKIKNGYLFKEHLDKAIELDPKDPLQYY 309
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
L GR+ Y +S+LS+ ERK+A + + T ++A+ N LK EE+ P K N + +AKC
Sbjct: 310 LLGRWCYAVSQLSWIERKVAAALFGNPPTATIQEALQNFLKVEEMHPGYSKYNYVFLAKC 369
Query: 222 YIEAGEYAKAVQWLDKAKAIPVVSYESHD 250
Y + G+ + A+++ D+A A+ + E D
Sbjct: 370 YKDLGQKSVALKYCDEASAMTAANKEDKD 398
>sp|Q3UJU9|RMD3_MOUSE Regulator of microtubule dynamics protein 3 OS=Mus musculus
GN=Rmdn3 PE=1 SV=2
Length = 470
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
L+ G K DK + + L LNNK + D L+RLA+A + D+ E+ K++ Y L
Sbjct: 249 LHQGSKQDKREGFQLL--LNNKLAYGSRQDFLWRLARAYSDMSDLTEEESGKKS---YAL 303
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
G E A+ A++ ++ WY + G + + + ++I+ G F++ ++KAI++ P+D
Sbjct: 304 NGKEEAEAALKKGDESAACHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPED 363
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
+ L GR+ Y++S L++ E+K A + T +DA+ + LKAEEL P K ++
Sbjct: 364 PRGHFLLGRWCYQVSHLNWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRV 423
Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
I+KCY E G+ ++A +W+ A+ +P V+ E
Sbjct: 424 YISKCYRELGKNSEARKWMKLAQELPDVTNE 454
>sp|Q66H15|RMD3_RAT Regulator of microtubule dynamics protein 3 OS=Rattus norvegicus
GN=Rmdn3 PE=2 SV=1
Length = 471
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
L+ G + +K + + L LNNK + D L+RLA+A + ++ E++K++ Y L
Sbjct: 249 LHQGSEQNKQEGFQLL--LNNKLAYGSRQDFLWRLARAYSDMTELTEEESEKKS---YAL 303
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
G E A+ A++ ++ + WY + G + + + ++I+ G F++ ++KAI++ P+D
Sbjct: 304 NGKEEAEAALKKGDESAASHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPED 363
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
+ L GR+ Y++S LS+ E+K A + T +DA+ + LKAEEL P K ++
Sbjct: 364 PRGHFLLGRWCYQVSHLSWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSKAGRV 423
Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
I+KCY E G+ ++A +WL+ A+ +P ++ E
Sbjct: 424 YISKCYRELGKNSEARKWLNLAQELPNITNE 454
>sp|Q5EAU9|RMD3_XENLA Regulator of microtubule dynamics protein 3 OS=Xenopus laevis
GN=rmdn3 PE=2 SV=1
Length = 463
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 7/218 (3%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
L+ G + + + + L LNNK + + L+RLA++ + I D + + +
Sbjct: 236 LHSGSTEQQREGFQLL--LNNKLLYGDHQEFLWRLARSYSDMCTIA---EDAQEKKSFAS 290
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
+G E A+ A++ N+ KW+ I G + + ++++I+ G +F++ + KAI + P D
Sbjct: 291 EGKEEAEAALQKGDQNAECHKWFAILCGQLSEHEGIQKRIQTGYLFKEHIEKAISLKPGD 350
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
Y L GR+ YE+S L + ERK A + + T +A+ N LKAE+L P K ++
Sbjct: 351 ARCYYLLGRWCYEVSNLGWLERKTASALYENPPTATVHEALQNFLKAEDLTPGFSKAARV 410
Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT 254
LIAKCY + G A A WL A +P V+ E + +TT
Sbjct: 411 LIAKCYKDLGNNATAAHWLKLAADLPNVTQEDRESTTT 448
>sp|Q2TBQ7|RMD2_BOVIN Regulator of microtubule dynamics protein 2 OS=Bos taurus GN=RMDN2
PE=2 SV=2
Length = 410
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 3/204 (1%)
Query: 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
K +++ L + K ++ + ++R A+A +Y++ +K+ Y G +KA+
Sbjct: 196 KVESFELLCDHKEKFRDEIEFIWRFARAYGDMYELSTNIQEKK---HYANIGKTLGEKAI 252
Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
AP N WY + G +F+ L+ KI G F++ ++KAI+ P++ LY LKGRY
Sbjct: 253 MRAPKNGYCHLWYAVLCGYVSEFEGLQNKINYGYRFKEHLDKAIEFLPEEPFLYYLKGRY 312
Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
Y +SKLS+ ERK+A + ++ T ++A+ N LK EEL P K N + +AKCY +
Sbjct: 313 CYAVSKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKSNYMFMAKCYADLN 372
Query: 227 EYAKAVQWLDKAKAIPVVSYESHD 250
+ A+++ + A +P ++ E D
Sbjct: 373 QIDSAMKFCNLAVLLPCITKEDKD 396
>sp|Q5R6Z1|RMD3_PONAB Regulator of microtubule dynamics protein 3 OS=Pongo abelii
GN=RMDN3 PE=2 SV=1
Length = 470
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 43 KKDDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEK--YILQG 98
+ D++ K + LNNK + D L+RLA+A + ++ +E SEK Y L G
Sbjct: 250 RGDEQGKREGFQLLLNNKLVYGSRQDFLWRLARAYSDMCELT-----EEVSEKKSYALDG 304
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
E A+ A+E +++ WY + G + +S++ +I+ G F++ ++KAI + P++
Sbjct: 305 KEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPENPM 364
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
Y L GR+ Y++S LS+ E+K A ++ T EDA+ + LKAEEL P K ++ I
Sbjct: 365 AYFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYI 424
Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
+KCY E G+ ++A W+ A +P V+ E
Sbjct: 425 SKCYRELGKNSEARWWMKLALELPDVTKE 453
>sp|Q96LZ7|RMD2_HUMAN Regulator of microtubule dynamics protein 2 OS=Homo sapiens
GN=RMDN2 PE=1 SV=2
Length = 410
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 114/201 (56%), Gaps = 3/201 (1%)
Query: 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
K++++ L + K ++ + ++R A+A +Y++ +K+ Y G +++A+
Sbjct: 196 KSESFELLRDHKEKFRDEIEFMWRFARAYGDMYELSTNTQEKK---HYANIGKTLSERAI 252
Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
AP N + WY + G +F+ L+ KI G +F++ ++ AI++ P++ LY LKGRY
Sbjct: 253 NRAPMNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRY 312
Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
Y +SKLS+ E+K+A + + T ++A+ N LKAEEL P N + +AKCY +
Sbjct: 313 CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLE 372
Query: 227 EYAKAVQWLDKAKAIPVVSYE 247
E A+++ + A +P V+ E
Sbjct: 373 ENQNALKFCNLALLLPTVTKE 393
>sp|Q1JQC5|RMD3_BOVIN Regulator of microtubule dynamics protein 3 OS=Bos taurus GN=RMDN3
PE=2 SV=1
Length = 471
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 118/213 (55%), Gaps = 11/213 (5%)
Query: 39 LYYGKKDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEK--Y 94
L+ G + K + + L LNNK + D L+RLA+A + ++ +EASEK Y
Sbjct: 249 LHQGSEQGKREGFQLL--LNNKLVHGSRQDFLWRLARAYSDMCELT-----EEASEKRSY 301
Query: 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAP 154
L G E A+ A+E N+ +WY + G + + ++ +I+ G F++ ++KAI + P
Sbjct: 302 ALSGKEEAEVALEKGNENAECHQWYAVLCGQLAEHEGIQRRIQSGFSFKEHVDKAIALKP 361
Query: 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN 214
++ + L GR+ Y++S LS+ E+K A + T +DA+++ LKAEEL P K
Sbjct: 362 ENPMAHFLLGRWCYQVSHLSWLEKKTATALSESPLGATVQDALSSFLKAEELQPGFSKAG 421
Query: 215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
++ I KCY E G+ +A +W+ A +P V+ E
Sbjct: 422 RIYICKCYKELGKNPEAKEWMKLALELPNVTKE 454
>sp|Q96TC7|RMD3_HUMAN Regulator of microtubule dynamics protein 3 OS=Homo sapiens
GN=RMDN3 PE=1 SV=2
Length = 470
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 43 KKDDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEK--YILQG 98
+ D++ K + LNNK + D L+RLA+A + ++ +E SEK Y L G
Sbjct: 250 RGDEQGKREGFQLLLNNKLVYGSRQDFLWRLARAYSDMCELT-----EEVSEKKSYALDG 304
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
E A+ A+E +++ WY + G + +S++ +I+ G F++ ++KAI + P++
Sbjct: 305 KEEAEAALEKGDESADCHLWYAVLCGQLAEHESIQRRIQSGFSFKEHVDKAIALQPENPM 364
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
+ L GR+ Y++S LS+ E+K A ++ T EDA+ + LKAEEL P K ++ I
Sbjct: 365 AHFLLGRWCYQVSHLSWLEKKTATALLESPLSATVEDALQSFLKAEELQPGFSKAGRVYI 424
Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247
+KCY E G+ ++A W+ A +P V+ E
Sbjct: 425 SKCYRELGKNSEARWWMKLALELPDVTKE 453
>sp|Q95LL7|RMD2_MACFA Regulator of microtubule dynamics protein 2 OS=Macaca fascicularis
GN=RMDN2 PE=2 SV=2
Length = 410
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 113/201 (56%), Gaps = 3/201 (1%)
Query: 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106
K++++ L + K + + ++R A+A +Y++ +K+ Y G +++A+
Sbjct: 196 KSESFELLCDHKEKFRDKIEFMWRFARAYGDMYELSTNTQEKK---HYANIGRTLSERAI 252
Query: 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166
AP N + WY + G +F+ L+ KI G +F++ ++ AI++ P++ LY LKGRY
Sbjct: 253 NRAPMNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRY 312
Query: 167 QYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226
Y +SKLS+ E+K+A + + T ++A+ N LKAEEL P N + +AKCY +
Sbjct: 313 CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYADLE 372
Query: 227 EYAKAVQWLDKAKAIPVVSYE 247
E A+++ + A +P V+ E
Sbjct: 373 ENQNALKFCNLALLLPTVTKE 393
>sp|Q32KL4|RMD1_BOVIN Regulator of microtubule dynamics protein 1 OS=Bos taurus GN=RMDN1
PE=2 SV=1
Length = 317
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 10/229 (4%)
Query: 30 SKYPEIDRLL----YYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRE 85
+K EI+ +L Y + + K Y L + K+ D ++L+RLA+A D+ +
Sbjct: 81 AKVFEIEEVLEQADYLYESGETEKLYQLLTQY--KESEDAELLWRLARASR---DVAQLS 135
Query: 86 NDKEASEKYIL-QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD 144
E +K+++ + +EYAK+A+E ++ KWY IC+G G ++ +K KI + ++
Sbjct: 136 GTSEEEKKFLVYEALEYAKRALEKNESSCAAHKWYAICIGDVGDYEGIKAKIANAYIIKE 195
Query: 145 QMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204
KAI++ PKD T L G + Y ++++ +++R+IA ++ + T E+A+ +AE
Sbjct: 196 HFEKAIELNPKDATSIHLMGIWCYTVAEMPWYQRRIAKVLFATPPGSTYEEALGYFHRAE 255
Query: 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253
++ P + +N LL+ K Y++ A WL KAK P + E + T
Sbjct: 256 QVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDKQIQT 304
>sp|Q9DCV4|RMD1_MOUSE Regulator of microtubule dynamics protein 1 OS=Mus musculus
GN=Rmdn1 PE=2 SV=2
Length = 305
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 116/215 (53%), Gaps = 6/215 (2%)
Query: 40 YYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL-QG 98
Y + + K Y L ++ K+ D ++L+RLA+A DI + E +K ++ +
Sbjct: 87 YLYESGETEKLYQLLIQY--KESEDGELLWRLARASR---DIAQLSKTSEEEKKVLVYEA 141
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
++YAK+A+E ++S KWY IC+ G ++ +K KI V ++ KAI++ PKD T
Sbjct: 142 LDYAKRALEKKESSSAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNPKDAT 201
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
L G + Y +++ +++R+IA ++ ++ T E+A+ KAEE+ P + +N LL+
Sbjct: 202 SIHLMGIWCYTFAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKNLLLL 261
Query: 219 AKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253
K Y++ A WL KAK P + E + T
Sbjct: 262 GKTYLKLNNKKLAAFWLVKAKGYPAHTEEDKQIQT 296
>sp|P34560|RMD1_CAEEL Regulator of microtubule dynamics protein 1 OS=Caenorhabditis
elegans GN=rmd-1 PE=1 SV=2
Length = 226
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 5/180 (2%)
Query: 66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA 125
D+L+R+ + CH L E + K +++G +Y +AM+L P++ KW I G
Sbjct: 35 DLLWRMCRFCHELSTTMSGEQRR----KMLIEGRDYGLEAMDLDPSSFLAAKWTAIMFGL 90
Query: 126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV 185
KEKI G +D ++KA+++ P DF L L+ R+ Y I+ LS+ ERK A ++
Sbjct: 91 VVDQLPTKEKINDGGRLKDMLDKALELDPTDFALLHLRARFSYTIANLSWLERKAASMLY 150
Query: 186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245
S++ + T +DA+ + KA A W EN L ++KC++ E +A + L+KA +P S
Sbjct: 151 SEVPKATIDDALVD-FKAAYNQNADWIENLLFLSKCHLAKKEKQQAREMLNKAIVLPAAS 209
>sp|Q4G069|RMD1_RAT Regulator of microtubule dynamics protein 1 OS=Rattus norvegicus
GN=Rmdn1 PE=2 SV=1
Length = 310
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 108/195 (55%), Gaps = 4/195 (2%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL-QGIEYAKKAMELAPNNSNTQKW 118
K+ D ++L+RLA+A DI + E +K +L + +EYAK+A+E ++ KW
Sbjct: 110 KESEDVELLWRLARASR---DIAQLCKTSEEEKKVLLYEALEYAKRALEKKGSSFAAHKW 166
Query: 119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER 178
Y IC+ G ++ +K KI V ++ KAI++ PKD T L G + Y +++ +++R
Sbjct: 167 YAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQR 226
Query: 179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
+IA ++ ++ T E+A+ +AEE+ P + +N LL+ K Y++ A WL KA
Sbjct: 227 RIAEVLFANPPSSTYEEALKYFHRAEEVDPNFYSKNLLLLGKTYLKLNNKKLAAFWLVKA 286
Query: 239 KAIPVVSYESHDLST 253
K+ P + E + T
Sbjct: 287 KSYPAHTEEDKQIQT 301
>sp|Q96DB5|RMD1_HUMAN Regulator of microtubule dynamics protein 1 OS=Homo sapiens
GN=RMDN1 PE=1 SV=1
Length = 314
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 2/194 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119
K+ D ++L+RLA+A + + R +E + + + +EYAK+A+E ++ + KWY
Sbjct: 110 KESEDAELLWRLARASRDVAQLSR--TSEEEKKLLVYEALEYAKRALEKNESSFASHKWY 167
Query: 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK 179
IC+ G ++ +K KI + ++ KAI++ PKD T L G + Y +++ +++R+
Sbjct: 168 AICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRR 227
Query: 180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239
IA ++ + T E A+ +AE++ P + +N LL+ K Y++ A WL KAK
Sbjct: 228 IAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAK 287
Query: 240 AIPVVSYESHDLST 253
P + E + T
Sbjct: 288 DYPAHTEEDKQIQT 301
>sp|Q5R8E4|RMD1_PONAB Regulator of microtubule dynamics protein 1 OS=Pongo abelii
GN=RMDN1 PE=2 SV=1
Length = 314
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 2/194 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119
K+ D ++L+RLA+A + + R +E + + + +EYAK+A+E ++ KWY
Sbjct: 110 KESEDAELLWRLARASRDVAQLSR--TSEEEKKLLVYEALEYAKRALEKNESSFAAHKWY 167
Query: 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK 179
IC+ G ++ +K KI + ++ KAI++ PKD T L G + Y +++ +++R+
Sbjct: 168 AICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRR 227
Query: 180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239
IA ++ + T E A++ +AE++ P + +N LL+ K Y++ A WL KAK
Sbjct: 228 IAKMLFATPPSSTYEKALSYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAK 287
Query: 240 AIPVVSYESHDLST 253
P + E + T
Sbjct: 288 DYPAHTEEDKQIQT 301
>sp|P12202|YCF3_MARPO Photosystem I assembly protein ycf3 OS=Marchantia polymorpha
GN=ycf3 PE=3 SV=2
Length = 167
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P+ P +A CH + ++ D EASE + Q
Sbjct: 80 LIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHYRGEQAIQQGDPEASETWFDQA 139
Query: 99 IEYAKKAMELAPNN 112
EY K+A+ LAP+N
Sbjct: 140 AEYWKQAILLAPSN 153
>sp|A2T334|YCF3_ANGEV Photosystem I assembly protein ycf3 OS=Angiopteris evecta GN=ycf3
PE=3 SV=1
Length = 171
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P+ P +A CH + ++ D E SE + Q
Sbjct: 80 LIHTSNGEHAKALEYYSQALERNPSLPQAFNNMAVICHYRGEQAIQQGDPETSEAWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY K+A+ LAP+N Q W I
Sbjct: 140 AEYWKQAIALAPSNYIEAQNWLKIT 164
>sp|Q6YXP2|YCF3_PHYPA Photosystem I assembly protein ycf3 OS=Physcomitrella patens subsp.
patens GN=ycf3 PE=3 SV=1
Length = 168
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P+ P +A CH + ++ D E SE + Q
Sbjct: 80 LIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHYRGEQAIQQGDSETSEAWFNQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
+Y K+A+ LAP+N Q W I
Sbjct: 140 ADYWKQAIALAPSNYIEAQNWLKIT 164
>sp|Q1ACM4|YCF3_CHAVU Photosystem I assembly protein ycf3 OS=Chara vulgaris GN=ycf3 PE=3
SV=1
Length = 167
Score = 37.7 bits (86), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P+ P +A CH + ++ D E+S+ + Q
Sbjct: 80 LIHTSNGEHAKALEYYFQALERNPSLPQAFNNVAVICHYRGEQAIQQQDIESSKAWFNQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY K+A++LAP N Q W I
Sbjct: 140 AEYWKQAIQLAPGNYIEAQNWLKIT 164
>sp|Q32RL4|YCF3_ZYGCR Photosystem I assembly protein ycf3 OS=Zygnema circumcarinatum
GN=ycf3 PE=3 SV=2
Length = 167
Score = 37.7 bits (86), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA ++ + P+ P +A CH + + D E SE + Q
Sbjct: 80 LIHTSNGEHAKAIEYYLQALERNPSLPQAFNNMAVICHYRGEQAVEKEDLETSEAWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKW 118
+Y K+A+ LAPNN Q W
Sbjct: 140 ADYWKQAIALAPNNYIEAQNW 160
>sp|P52806|YCF3_PINTH Photosystem I assembly protein ycf3 OS=Pinus thunbergii GN=ycf3
PE=3 SV=1
Length = 169
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + KA + + P+ P L A CH + R+ D E +E + Q
Sbjct: 80 LVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY ++A+ LAP N Q W I
Sbjct: 140 AEYWEQAIALAPGNYIEAQNWLKIT 164
>sp|A4QM74|YCF3_PINKO Photosystem I assembly protein ycf3 OS=Pinus koraiensis GN=ycf3
PE=3 SV=1
Length = 169
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + KA + + P+ P L A CH + R+ D E +E + Q
Sbjct: 80 LVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHYRGEQAIRQGDPETAEAWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY ++A+ LAP N Q W I
Sbjct: 140 AEYWEQAIALAPGNYIEAQNWLKIT 164
>sp|B2VG72|GPPA_ERWT9 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=gppA PE=3
SV=1
Length = 494
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 27 VNNSKYPEIDRLLYYG-----KKDDKAKAYNL---TMELNNKQPNDPDVLYRLAKACHCL 78
VN E RL+Y G DK ++ + EL + + P LY L+ C +
Sbjct: 108 VNVISGEEEARLIYQGVSHTTGGSDKRLVVDIGGGSTELVTGRGSQPTTLYSLSMGC--V 165
Query: 79 YDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC 138
++R +D++ + Q + A+ + ++ Q W +CVGA+G Q+L+E +
Sbjct: 166 TWLERYFSDRQLGKVNFEQAEQAARAMIRPIADSLKAQGWQ-VCVGASGTVQALQEIMMA 224
Query: 139 -GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF-----FERKIAVLI 184
G+ R +NK Q+ + L+ + EI L+ F +++LI
Sbjct: 225 QGMDERITLNKLQQLKQRAIECGKLE---ELEIEGLTLERALVFPSGLSILI 273
>sp|Q32RY5|YCF3_STAPU Photosystem I assembly protein ycf3 OS=Staurastrum punctulatum
GN=ycf3 PE=3 SV=1
Length = 169
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + KA + + P+ P L +A CH + + D E SE + Q
Sbjct: 80 LIHTSNGEHVKALEYYFQALERNPSLPQALNNMAVICHYRGEQAIEQGDSENSEIWFDQA 139
Query: 99 IEYAKKAMELAPNN 112
Y K+A+ LAPNN
Sbjct: 140 ASYWKQAIALAPNN 153
>sp|Q09X16|YCF3_MORIN Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3
SV=1
Length = 168
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + + KA + P P +A CH + R+ D E +E + Q
Sbjct: 80 LIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGICVGANGQFQ 130
EY K+A+ L P N Q W I G+F+
Sbjct: 140 AEYWKQALALTPGNYIEAQNWLKIT----GRFE 168
>sp|Q06FW6|YCF3_PELHO Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3
PE=3 SV=1
Length = 168
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P L +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQALNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|Q2PMU4|YCF3_SOYBN Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3
SV=1
Length = 168
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEVAESWFNQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGICVGANGQFQ 130
I G+F+
Sbjct: 161 LKIT----GRFE 168
>sp|Q8WI17|YCF3_PSINU Photosystem I assembly protein ycf3 OS=Psilotum nudum GN=ycf3 PE=3
SV=1
Length = 171
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P+ P +A CH + ++ D SE + +
Sbjct: 80 LIHTSNGEHAKALEYYFQALERNPSLPQAFNNMAVICHYRGEQAIQQGDPGTSEIWFDKA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY K+A+ LAPNN Q W I
Sbjct: 140 AEYWKQAIALAPNNYIEAQNWLRIT 164
>sp|A6BM62|YCF3_GNEPA Photosystem I assembly protein ycf3 OS=Gnetum parvifolium GN=ycf3
PE=3 SV=1
Length = 168
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + P P L A CH + ++ D E +E + Q
Sbjct: 80 LVHTSNGEHAKALEYYFQALERNPILPQALNNTALICHYRGEQAIQQGDPETAEVWFDQA 139
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY K+A+ LAP N Q W I
Sbjct: 140 AEYWKQAIMLAPGNYIEAQNWLKIT 164
>sp|Q68S05|YCF3_PANGI Photosystem I assembly protein ycf3 OS=Panax ginseng GN=ycf3 PE=3
SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112
+ P P +A CH + R+ D E +E + Q EY K+AM L P N
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAMALTPGN 153
>sp|Q09MH7|YCF3_CITSI Photosystem I assembly protein ycf3 OS=Citrus sinensis GN=ycf3 PE=3
SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIQAQNW 160
Query: 119 YGICVGANGQFQ 130
I G+F+
Sbjct: 161 LKIT----GRFE 168
>sp|A4GG96|YCF3_PHAVU Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3
PE=3 SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEVAESWFNQAAEYWKQAIALTPGNYIAAQNW 160
Query: 119 YGICVGANGQFQ 130
I G+F+
Sbjct: 161 LKIT----GRFE 168
>sp|Q4VZH4|YCF3_CUCSA Photosystem I assembly protein ycf3 OS=Cucumis sativus GN=ycf3 PE=3
SV=1
Length = 169
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + + KA + P P +A CH + R+ D E +E + Q
Sbjct: 81 LIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFNQA 140
Query: 99 IEYAKKAMELAPNNS-NTQKWYGIC 122
EY K+A+ L P N Q W I
Sbjct: 141 AEYWKQAIALTPGNYIEAQNWLKIT 165
>sp|Q5IBL2|YCF3_PLALA Photosystem I assembly protein ycf3 OS=Plantago lanceolata GN=ycf3
PE=3 SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112
+ P P +A CH + RE D E +E + Q EY K+A+ L P N
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAVREGDSEIAEAWFDQAAEYWKQAIALTPGN 153
>sp|Q9BBT4|YCF3_LOTJA Photosystem I assembly protein ycf3 OS=Lotus japonicus GN=ycf3 PE=3
SV=2
Length = 168
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|A6H5H4|YCF3_CYCTA Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3
PE=3 SV=1
Length = 170
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P+ P +A CH + R+ D E +E + + EY K+A+ LAP N Q W
Sbjct: 102 RNPSLPQAFNNMAVICHYRGEQAIRQGDPETAEAWSDRAAEYWKQAIALAPGNYIEAQNW 161
Query: 119 YGIC 122
I
Sbjct: 162 LKIT 165
>sp|Q85C36|YCF3_ANTFO Photosystem I assembly protein ycf3 OS=Anthoceros formosae GN=ycf3
PE=2 SV=1
Length = 170
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + + AKA + + + P L +A CH + E D E E + Q
Sbjct: 80 LIHTSNGEHAKALEYYFQALERNSSLPQALNNMAVICHYRGEQAIEEGDPETCEVWFDQA 139
Query: 99 IEYAKKAMELAPNN-SNTQKWYGIC 122
+Y KKA+ LAP+N Q W I
Sbjct: 140 ADYWKKAISLAPSNYIEAQNWLRIT 164
>sp|A4GYR1|YCF3_POPTR Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3
PE=3 SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|Q14FF6|YCF3_POPAL Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3
SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|Q2L906|YCF3_GOSHI Photosystem I assembly protein ycf3 OS=Gossypium hirsutum GN=ycf3
PE=3 SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|A0ZZ36|YCF3_GOSBA Photosystem I assembly protein ycf3 OS=Gossypium barbadense GN=ycf3
PE=3 SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|B7KKZ8|YCF3_CYAP7 Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC
7424) GN=ycf3 PE=3 SV=1
Length = 173
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G+ + + Y+ +ELN PN P L +A H + + E ++ SE + EY
Sbjct: 86 GEHERALEYYHEAIELN---PNLPSALNNIAVIYHYQGERAKEEGREDESEALFDKAAEY 142
Query: 102 AKKAMELAPNNS-NTQKWYGIC 122
K+A+ LAPNN Q W +
Sbjct: 143 WKQAIRLAPNNYIEAQNWLKVT 164
>sp|Q9MTP0|YCF3_OENEH Photosystem I assembly protein ycf3 OS=Oenothera elata subsp.
hookeri GN=ycf3 PE=3 SV=3
Length = 168
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|Q49KZ7|YCF3_EUCGG Photosystem I assembly protein ycf3 OS=Eucalyptus globulus subsp.
globulus GN=ycf3 PE=3 SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LKIT 164
>sp|Q9M3M5|YCF3_SPIOL Photosystem I assembly protein ycf3 OS=Spinacia oleracea GN=ycf3
PE=3 SV=1
Length = 165
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N
Sbjct: 98 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQALTLTPGN 150
>sp|A0A336|YCF3_COFAR Photosystem I assembly protein ycf3 OS=Coffea arabica GN=ycf3 PE=3
SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112
+ P P +A CH + R+ D E +E + Q EY K+A+ L P N
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAISLTPGN 153
>sp|P61844|YCF3_SINAL Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3
SV=1
Length = 168
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS-NTQKW 118
+ P P +A CH + ++ D E +E + Q EY K+A+ L P N Q W
Sbjct: 101 RNPFLPQAFNNMAVICHYRGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNW 160
Query: 119 YGIC 122
I
Sbjct: 161 LTIT 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,861,630
Number of Sequences: 539616
Number of extensions: 3760997
Number of successful extensions: 9487
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 9359
Number of HSP's gapped (non-prelim): 154
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)