Query psy9159
Match_columns 259
No_of_seqs 146 out of 1735
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 99.9 2.6E-21 5.7E-26 173.0 17.8 171 42-248 298-492 (966)
2 KOG4626|consensus 99.9 1.1E-21 2.3E-26 175.4 14.4 200 36-248 225-458 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 4.3E-19 9.2E-24 167.5 21.4 158 45-247 345-502 (615)
4 TIGR00990 3a0801s09 mitochondr 99.8 4.3E-19 9.3E-24 167.4 20.6 187 32-246 369-576 (615)
5 KOG1125|consensus 99.8 3.6E-19 7.9E-24 158.4 15.4 183 29-249 286-535 (579)
6 PRK12370 invasion protein regu 99.8 1.7E-18 3.7E-23 161.3 18.7 186 45-246 275-475 (553)
7 TIGR02521 type_IV_pilW type IV 99.8 8.5E-18 1.8E-22 137.5 20.3 167 33-247 36-204 (234)
8 PRK11189 lipoprotein NlpI; Pro 99.8 7.6E-18 1.6E-22 145.2 20.6 181 45-251 78-276 (296)
9 KOG1155|consensus 99.8 4.1E-18 9E-23 148.2 16.1 152 44-240 343-494 (559)
10 PRK09782 bacteriophage N4 rece 99.8 1.4E-17 3.1E-22 162.3 21.3 170 45-247 523-712 (987)
11 PRK12370 invasion protein regu 99.8 1.2E-17 2.6E-22 155.6 19.3 171 45-242 318-503 (553)
12 KOG1126|consensus 99.8 1.4E-18 3E-23 156.8 11.2 150 55-249 411-560 (638)
13 COG3063 PilF Tfp pilus assembl 99.8 3.6E-17 7.7E-22 131.3 17.8 168 32-247 39-208 (250)
14 PRK15174 Vi polysaccharide exp 99.8 3.5E-17 7.7E-22 155.1 20.3 164 42-247 224-387 (656)
15 TIGR03302 OM_YfiO outer membra 99.8 2.4E-16 5.2E-21 131.2 21.9 191 31-243 36-234 (235)
16 TIGR02917 PEP_TPR_lipo putativ 99.8 1.3E-16 2.8E-21 154.5 22.9 203 27-247 21-262 (899)
17 PRK11447 cellulose synthase su 99.7 1.8E-16 4E-21 159.0 22.5 193 35-249 276-532 (1157)
18 COG3063 PilF Tfp pilus assembl 99.7 8.7E-17 1.9E-21 129.1 15.0 145 66-255 36-182 (250)
19 PRK15359 type III secretion sy 99.7 8.9E-17 1.9E-21 124.1 14.4 125 52-224 14-138 (144)
20 PRK15359 type III secretion sy 99.7 4.4E-17 9.5E-22 125.8 12.6 119 99-251 13-131 (144)
21 PRK15174 Vi polysaccharide exp 99.7 8.8E-16 1.9E-20 145.6 22.2 179 42-246 54-284 (656)
22 PLN02789 farnesyltranstransfer 99.7 4E-16 8.8E-21 135.2 17.9 162 44-247 50-218 (320)
23 KOG1155|consensus 99.7 9.2E-16 2E-20 133.7 19.6 171 42-244 274-464 (559)
24 PRK10370 formate-dependent nit 99.7 7.5E-16 1.6E-20 125.1 17.0 124 45-210 53-177 (198)
25 KOG1173|consensus 99.7 1.1E-15 2.4E-20 136.0 18.7 190 45-249 292-526 (611)
26 TIGR02917 PEP_TPR_lipo putativ 99.7 1.4E-15 3.1E-20 147.2 21.3 165 45-239 717-898 (899)
27 PRK09782 bacteriophage N4 rece 99.7 5.8E-16 1.2E-20 151.2 18.2 156 45-246 590-745 (987)
28 KOG1126|consensus 99.7 1.9E-16 4.1E-21 143.1 12.9 176 45-245 435-624 (638)
29 PRK10370 formate-dependent nit 99.7 1.6E-15 3.5E-20 123.1 15.9 125 95-250 55-182 (198)
30 PRK11447 cellulose synthase su 99.7 3.5E-15 7.5E-20 149.8 21.8 196 33-246 466-705 (1157)
31 KOG0547|consensus 99.7 1.8E-15 3.8E-20 132.8 16.2 155 45-244 340-494 (606)
32 KOG2076|consensus 99.7 1.3E-14 2.8E-19 135.0 21.6 211 30-254 141-491 (895)
33 PLN02789 farnesyltranstransfer 99.7 5.5E-15 1.2E-19 128.1 17.3 166 45-246 85-255 (320)
34 KOG0547|consensus 99.7 6.3E-15 1.4E-19 129.3 17.5 185 31-243 363-568 (606)
35 TIGR02521 type_IV_pilW type IV 99.7 2.5E-14 5.4E-19 116.9 20.3 156 42-243 77-234 (234)
36 PF13429 TPR_15: Tetratricopep 99.7 1.9E-15 4.1E-20 129.2 13.9 152 45-241 124-277 (280)
37 PRK11788 tetratricopeptide rep 99.7 2.4E-14 5.2E-19 127.6 21.5 200 32-244 39-281 (389)
38 PRK11788 tetratricopeptide rep 99.7 1.3E-14 2.8E-19 129.3 19.1 178 42-246 119-316 (389)
39 PRK15179 Vi polysaccharide bio 99.6 2.2E-14 4.7E-19 135.5 20.0 154 46-244 67-220 (694)
40 TIGR02552 LcrH_SycD type III s 99.6 8.5E-15 1.8E-19 111.3 13.2 122 100-252 4-125 (135)
41 KOG0624|consensus 99.6 2.6E-13 5.7E-18 114.8 19.9 222 27-252 37-381 (504)
42 KOG1125|consensus 99.6 3.2E-14 7E-19 127.1 15.2 144 92-246 298-498 (579)
43 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.5E-19 124.3 10.9 171 45-247 58-249 (280)
44 PRK10049 pgaA outer membrane p 99.6 1.3E-13 2.9E-18 133.1 18.8 153 45-244 29-181 (765)
45 PRK14574 hmsH outer membrane p 99.6 1.6E-13 3.5E-18 131.8 19.0 179 18-247 24-204 (822)
46 PRK11189 lipoprotein NlpI; Pro 99.6 6.7E-14 1.4E-18 120.7 14.7 119 91-241 76-194 (296)
47 TIGR02552 LcrH_SycD type III s 99.6 2.7E-13 5.8E-18 103.0 15.2 117 52-213 4-120 (135)
48 KOG1174|consensus 99.5 1.1E-12 2.3E-17 113.5 19.4 184 29-251 301-510 (564)
49 PRK10049 pgaA outer membrane p 99.5 4.4E-13 9.6E-18 129.5 19.3 181 37-251 246-466 (765)
50 TIGR03302 OM_YfiO outer membra 99.5 6.4E-13 1.4E-17 110.5 17.1 157 60-253 28-207 (235)
51 KOG0553|consensus 99.5 5.8E-14 1.3E-18 117.0 10.3 115 29-170 82-196 (304)
52 COG5010 TadD Flp pilus assembl 99.5 1.2E-12 2.5E-17 107.3 17.4 160 46-237 48-227 (257)
53 KOG2002|consensus 99.5 4.4E-13 9.6E-18 125.8 16.8 199 30-252 166-382 (1018)
54 KOG0553|consensus 99.5 1.2E-13 2.5E-18 115.2 11.3 91 140-251 98-188 (304)
55 KOG0550|consensus 99.5 5.1E-14 1.1E-18 121.5 9.1 84 33-133 54-137 (486)
56 PRK15363 pathogenicity island 99.5 4.7E-13 1E-17 102.8 11.9 116 105-251 26-142 (157)
57 KOG1129|consensus 99.5 1.3E-12 2.9E-17 110.0 15.2 180 45-249 270-466 (478)
58 cd05804 StaR_like StaR_like; a 99.5 2.6E-12 5.6E-17 113.2 17.8 169 32-244 47-218 (355)
59 PRK10747 putative protoheme IX 99.5 1.1E-11 2.4E-16 111.3 21.6 183 35-242 160-391 (398)
60 KOG2003|consensus 99.5 2E-12 4.3E-17 113.1 15.6 181 32-247 494-695 (840)
61 COG5010 TadD Flp pilus assembl 99.5 5.3E-12 1.1E-16 103.5 17.0 121 95-246 82-202 (257)
62 KOG0550|consensus 99.5 5.9E-13 1.3E-17 115.0 11.9 173 44-252 182-360 (486)
63 PRK10153 DNA-binding transcrip 99.5 8E-12 1.7E-16 114.9 19.9 162 59-253 331-494 (517)
64 PRK11906 transcriptional regul 99.5 3.3E-12 7.1E-17 113.0 15.9 131 94-246 273-406 (458)
65 COG4235 Cytochrome c biogenesi 99.4 6.3E-12 1.4E-16 105.3 16.6 126 45-211 136-261 (287)
66 PRK11906 transcriptional regul 99.4 8.3E-12 1.8E-16 110.5 17.5 164 43-242 270-437 (458)
67 KOG3060|consensus 99.4 2.2E-11 4.8E-16 99.3 17.9 156 45-245 66-224 (289)
68 PLN03088 SGT1, suppressor of 99.4 3.1E-12 6.6E-17 113.0 13.8 113 31-170 5-117 (356)
69 KOG2002|consensus 99.4 1.2E-11 2.6E-16 116.3 17.4 179 45-256 544-757 (1018)
70 TIGR00540 hemY_coli hemY prote 99.4 8.9E-11 1.9E-15 105.8 22.1 181 35-240 160-398 (409)
71 PRK10747 putative protoheme IX 99.4 8.6E-11 1.9E-15 105.5 21.3 211 32-247 88-363 (398)
72 PRK15179 Vi polysaccharide bio 99.4 1.5E-11 3.2E-16 116.5 16.4 127 44-215 99-225 (694)
73 PLN03088 SGT1, suppressor of 99.4 1.3E-11 2.8E-16 109.1 14.8 115 68-227 5-119 (356)
74 KOG0548|consensus 99.4 3.3E-11 7.2E-16 107.2 17.0 180 45-247 238-461 (539)
75 COG2956 Predicted N-acetylgluc 99.4 2.2E-10 4.7E-15 96.6 20.3 187 30-245 38-282 (389)
76 PRK15363 pathogenicity island 99.4 4.1E-11 8.8E-16 92.2 14.5 108 56-207 25-133 (157)
77 PF13414 TPR_11: TPR repeat; P 99.4 3.1E-12 6.7E-17 85.8 7.4 68 155-243 1-69 (69)
78 TIGR00540 hemY_coli hemY prote 99.3 3.5E-10 7.6E-15 101.9 22.3 214 30-247 86-372 (409)
79 COG4235 Cytochrome c biogenesi 99.3 5.9E-11 1.3E-15 99.6 15.5 126 95-248 138-263 (287)
80 cd05804 StaR_like StaR_like; a 99.3 1.2E-10 2.6E-15 102.5 17.6 160 45-246 20-182 (355)
81 PRK10866 outer membrane biogen 99.3 9.4E-10 2E-14 92.1 22.0 185 30-238 34-238 (243)
82 KOG0495|consensus 99.3 1.8E-10 3.9E-15 104.8 18.6 175 45-247 665-886 (913)
83 KOG3060|consensus 99.3 3.8E-10 8.3E-15 92.2 17.7 138 42-222 98-235 (289)
84 KOG4162|consensus 99.3 1.9E-10 4E-15 106.2 16.2 122 96-246 667-788 (799)
85 PF06552 TOM20_plant: Plant sp 99.3 3.6E-10 7.8E-15 88.2 15.4 119 90-218 2-120 (186)
86 PRK10153 DNA-binding transcrip 99.3 1.9E-10 4.1E-15 105.9 16.3 166 32-237 343-510 (517)
87 PRK14720 transcript cleavage f 99.3 1.7E-10 3.6E-15 110.7 16.1 192 42-247 43-258 (906)
88 KOG2076|consensus 99.2 3.4E-10 7.3E-15 106.0 16.8 119 94-243 154-272 (895)
89 CHL00033 ycf3 photosystem I as 99.2 2.1E-10 4.4E-15 90.7 13.2 146 45-228 13-167 (168)
90 KOG1174|consensus 99.2 9.1E-10 2E-14 95.6 17.6 167 46-247 213-403 (564)
91 PRK02603 photosystem I assembl 99.2 2.8E-10 6.1E-15 90.3 13.0 133 61-227 31-166 (172)
92 PRK14574 hmsH outer membrane p 99.2 5.3E-10 1.1E-14 107.8 17.0 150 52-248 21-172 (822)
93 KOG1173|consensus 99.2 1.5E-09 3.2E-14 97.4 17.6 188 32-247 248-449 (611)
94 TIGR02795 tol_pal_ybgF tol-pal 99.2 4.8E-10 1E-14 82.6 12.4 109 113-251 2-115 (119)
95 KOG0548|consensus 99.2 4.5E-10 9.6E-15 100.1 14.0 161 45-237 312-485 (539)
96 KOG1156|consensus 99.2 3.9E-10 8.4E-15 102.4 13.7 171 25-243 4-174 (700)
97 PF13414 TPR_11: TPR repeat; P 99.2 1.2E-10 2.6E-15 78.0 7.7 68 111-208 1-69 (69)
98 cd00189 TPR Tetratricopeptide 99.2 7.1E-10 1.5E-14 76.7 11.7 99 115-244 2-100 (100)
99 COG4783 Putative Zn-dependent 99.2 4.9E-09 1.1E-13 92.8 19.1 146 32-207 310-455 (484)
100 KOG4162|consensus 99.2 9E-10 2E-14 101.8 14.6 124 44-209 663-786 (799)
101 PF13432 TPR_16: Tetratricopep 99.2 1.2E-10 2.6E-15 77.0 6.7 56 190-246 10-65 (65)
102 COG4783 Putative Zn-dependent 99.1 4.4E-09 9.6E-14 93.1 17.8 136 62-242 303-438 (484)
103 PRK02603 photosystem I assembl 99.1 1.4E-09 3.1E-14 86.3 13.3 106 110-246 32-154 (172)
104 KOG0624|consensus 99.1 1.7E-09 3.7E-14 92.0 14.2 163 60-247 33-224 (504)
105 KOG1129|consensus 99.1 2E-09 4.4E-14 91.0 14.4 185 42-255 235-435 (478)
106 PF06552 TOM20_plant: Plant sp 99.1 3E-09 6.6E-14 83.1 14.3 116 47-166 7-123 (186)
107 cd00189 TPR Tetratricopeptide 99.1 1.6E-09 3.5E-14 74.8 11.7 98 67-208 2-99 (100)
108 KOG1840|consensus 99.1 1.6E-09 3.4E-14 98.7 14.5 170 42-243 211-398 (508)
109 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.8E-09 6E-14 78.5 13.3 105 65-214 2-112 (119)
110 PF12569 NARP1: NMDA receptor- 99.1 1.2E-08 2.6E-13 93.8 19.6 194 31-245 7-261 (517)
111 CHL00033 ycf3 photosystem I as 99.1 2.2E-09 4.8E-14 84.8 12.3 121 96-247 16-155 (168)
112 KOG1127|consensus 99.1 3E-09 6.5E-14 100.7 14.9 162 45-241 472-659 (1238)
113 KOG0495|consensus 99.1 2.6E-08 5.6E-13 91.0 19.6 151 95-246 600-787 (913)
114 PF13432 TPR_16: Tetratricopep 99.0 8E-10 1.7E-14 73.0 7.0 64 33-113 2-65 (65)
115 PF13525 YfiO: Outer membrane 99.0 6.6E-08 1.4E-12 78.8 19.8 181 29-233 6-199 (203)
116 PF12895 Apc3: Anaphase-promot 99.0 7.9E-10 1.7E-14 77.1 6.7 76 141-238 7-84 (84)
117 KOG1128|consensus 99.0 3.1E-09 6.7E-14 97.9 12.2 170 45-246 438-621 (777)
118 PRK14720 transcript cleavage f 99.0 7.8E-09 1.7E-13 99.4 14.8 149 58-242 24-179 (906)
119 KOG1156|consensus 99.0 4E-08 8.6E-13 89.6 16.6 192 30-249 43-256 (700)
120 KOG4648|consensus 98.9 3.6E-09 7.8E-14 90.1 8.6 201 25-253 94-342 (536)
121 KOG1840|consensus 98.9 6E-08 1.3E-12 88.5 17.2 168 44-242 254-439 (508)
122 COG4105 ComL DNA uptake lipopr 98.9 1.2E-06 2.6E-11 72.4 22.2 211 15-246 14-238 (254)
123 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 5.7E-09 1.2E-13 92.6 9.1 70 151-241 69-141 (453)
124 PRK10803 tol-pal system protei 98.9 3.1E-08 6.7E-13 83.7 12.9 109 114-252 143-257 (263)
125 PF09976 TPR_21: Tetratricopep 98.9 6.4E-08 1.4E-12 74.6 13.5 127 30-204 13-145 (145)
126 PF12895 Apc3: Anaphase-promot 98.9 4E-09 8.8E-14 73.4 6.0 79 94-203 4-84 (84)
127 KOG0543|consensus 98.9 6.6E-08 1.4E-12 84.2 14.3 100 114-244 258-358 (397)
128 KOG2003|consensus 98.9 1.6E-08 3.4E-13 89.0 10.3 190 32-255 423-635 (840)
129 PF09976 TPR_21: Tetratricopep 98.9 1.9E-07 4.1E-12 72.0 15.2 111 97-239 29-145 (145)
130 PRK15331 chaperone protein Sic 98.9 2.4E-08 5.1E-13 77.3 9.7 107 104-241 28-134 (165)
131 PF14559 TPR_19: Tetratricopep 98.9 4.5E-09 9.8E-14 69.9 4.9 61 190-251 4-64 (68)
132 PRK10866 outer membrane biogen 98.9 2.4E-07 5.2E-12 77.6 16.4 159 63-252 30-215 (243)
133 COG2956 Predicted N-acetylgluc 98.8 3.7E-07 8E-12 77.4 17.0 173 29-244 141-314 (389)
134 PF14559 TPR_19: Tetratricopep 98.8 7.8E-09 1.7E-13 68.8 5.7 65 42-121 3-67 (68)
135 KOG1127|consensus 98.8 1.5E-07 3.3E-12 89.5 15.7 142 93-245 472-629 (1238)
136 COG3071 HemY Uncharacterized e 98.8 2.1E-06 4.5E-11 74.6 21.2 185 32-241 157-390 (400)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.1E-07 2.4E-12 84.5 13.5 112 94-239 184-295 (395)
138 PF13371 TPR_9: Tetratricopept 98.8 1.9E-08 4E-13 67.9 6.7 59 190-249 8-66 (73)
139 PF12569 NARP1: NMDA receptor- 98.8 1E-06 2.2E-11 81.1 19.9 176 33-242 43-292 (517)
140 KOG0543|consensus 98.8 1.7E-07 3.7E-12 81.7 13.3 111 33-170 213-338 (397)
141 PF04733 Coatomer_E: Coatomer 98.8 1.6E-07 3.5E-12 80.6 12.9 155 45-249 116-273 (290)
142 PRK10803 tol-pal system protei 98.7 2.6E-07 5.7E-12 78.1 13.2 106 32-163 146-257 (263)
143 PF13525 YfiO: Outer membrane 98.7 4.2E-07 9.1E-12 74.1 13.8 156 63-252 3-181 (203)
144 KOG1128|consensus 98.7 1.1E-07 2.5E-12 87.8 11.3 120 45-208 499-618 (777)
145 PRK15331 chaperone protein Sic 98.7 8.4E-07 1.8E-11 68.8 13.2 109 55-208 27-135 (165)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1E-06 2.2E-11 78.5 15.3 114 30-172 170-283 (395)
147 COG0457 NrfG FOG: TPR repeat [ 98.6 1E-05 2.2E-10 64.1 19.1 155 45-244 73-234 (291)
148 KOG3785|consensus 98.6 1.7E-06 3.7E-11 74.3 14.9 194 31-252 25-225 (557)
149 PF12688 TPR_5: Tetratrico pep 98.6 1.2E-06 2.6E-11 65.1 12.3 97 113-240 1-103 (120)
150 PF13424 TPR_12: Tetratricopep 98.6 3.2E-08 7E-13 67.7 3.5 68 154-241 2-75 (78)
151 PF13371 TPR_9: Tetratricopept 98.6 3.1E-07 6.8E-12 61.8 8.3 64 42-120 7-70 (73)
152 KOG1130|consensus 98.6 9E-08 1.9E-12 83.5 6.6 189 30-241 19-264 (639)
153 PF04733 Coatomer_E: Coatomer 98.6 8.5E-07 1.8E-11 76.2 11.6 155 45-247 80-236 (290)
154 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 3.8E-07 8.3E-12 81.1 9.3 71 107-207 69-142 (453)
155 COG0457 NrfG FOG: TPR repeat [ 98.5 2E-05 4.4E-10 62.4 18.2 155 45-244 109-268 (291)
156 KOG2610|consensus 98.5 4E-06 8.6E-11 71.7 13.9 159 34-239 109-274 (491)
157 PLN03218 maturation of RBCL 1; 98.5 1.9E-05 4E-10 78.8 20.4 51 190-242 732-784 (1060)
158 KOG4340|consensus 98.5 4.6E-06 9.9E-11 70.3 13.4 169 36-242 18-208 (459)
159 PF12688 TPR_5: Tetratrico pep 98.5 3.8E-06 8.1E-11 62.4 11.6 97 65-205 1-103 (120)
160 KOG2376|consensus 98.5 1.4E-05 3.1E-10 72.6 17.4 199 31-246 15-258 (652)
161 COG4785 NlpI Lipoprotein NlpI, 98.5 1.3E-05 2.9E-10 64.7 15.1 163 4-211 2-167 (297)
162 PF13431 TPR_17: Tetratricopep 98.4 1.9E-07 4.2E-12 53.2 3.1 34 199-233 1-34 (34)
163 PF14938 SNAP: Soluble NSF att 98.4 4.7E-06 1E-10 71.4 13.1 182 30-252 36-236 (282)
164 COG4700 Uncharacterized protei 98.4 7.3E-05 1.6E-09 59.1 18.2 149 45-244 74-229 (251)
165 KOG4234|consensus 98.4 5.9E-06 1.3E-10 65.9 11.2 115 29-165 96-210 (271)
166 KOG4234|consensus 98.4 2.3E-06 4.9E-11 68.2 8.7 98 120-248 102-204 (271)
167 KOG4648|consensus 98.4 1E-06 2.3E-11 75.3 7.3 101 119-250 103-203 (536)
168 COG4785 NlpI Lipoprotein NlpI, 98.4 2.6E-05 5.5E-10 63.1 14.2 167 44-242 78-267 (297)
169 PLN03081 pentatricopeptide (PP 98.4 2E-05 4.3E-10 75.9 16.4 168 45-242 374-558 (697)
170 PLN03218 maturation of RBCL 1; 98.3 8.6E-05 1.9E-09 74.2 20.8 185 42-241 519-748 (1060)
171 COG3071 HemY Uncharacterized e 98.3 0.00066 1.4E-08 59.4 23.1 196 44-247 97-363 (400)
172 PLN03081 pentatricopeptide (PP 98.3 4.3E-05 9.4E-10 73.6 17.8 173 42-238 271-488 (697)
173 PF13512 TPR_18: Tetratricopep 98.3 8.7E-06 1.9E-10 61.8 9.7 114 29-159 11-135 (142)
174 KOG4642|consensus 98.3 3.5E-06 7.6E-11 68.7 7.7 85 92-206 23-107 (284)
175 PF13431 TPR_17: Tetratricopep 98.3 6.3E-07 1.4E-11 51.1 2.4 25 146-170 2-26 (34)
176 PF13428 TPR_14: Tetratricopep 98.2 2.3E-06 4.9E-11 51.8 4.6 43 65-121 1-43 (44)
177 COG1729 Uncharacterized protei 98.2 2.2E-05 4.8E-10 65.5 11.9 104 116-250 144-253 (262)
178 PLN03077 Protein ECB2; Provisi 98.2 8.5E-05 1.8E-09 73.3 17.9 166 45-241 538-720 (857)
179 PLN03077 Protein ECB2; Provisi 98.2 0.0001 2.2E-09 72.8 17.8 127 44-206 567-720 (857)
180 PF13428 TPR_14: Tetratricopep 98.2 5.3E-06 1.2E-10 50.2 5.2 43 157-220 1-43 (44)
181 KOG1915|consensus 98.2 0.00035 7.7E-09 62.5 18.3 185 45-246 297-505 (677)
182 PF07719 TPR_2: Tetratricopept 98.1 4.6E-06 1E-10 47.2 4.0 34 212-245 1-34 (34)
183 PF00515 TPR_1: Tetratricopept 98.1 3.5E-06 7.5E-11 47.8 3.3 34 212-245 1-34 (34)
184 KOG4642|consensus 98.1 7.3E-06 1.6E-10 66.9 6.1 95 30-151 12-106 (284)
185 PF14938 SNAP: Soluble NSF att 98.1 4.1E-05 8.8E-10 65.6 10.8 54 191-244 129-187 (282)
186 COG1729 Uncharacterized protei 98.1 8.8E-05 1.9E-09 62.0 12.0 107 31-164 144-256 (262)
187 KOG2796|consensus 98.0 0.00061 1.3E-08 56.8 16.4 132 96-254 194-328 (366)
188 KOG1915|consensus 98.0 0.00028 6E-09 63.1 15.3 95 45-164 87-181 (677)
189 KOG3785|consensus 98.0 0.00029 6.2E-09 61.0 14.9 133 97-244 40-183 (557)
190 PF05843 Suf: Suppressor of fo 98.0 0.0002 4.4E-09 61.3 13.9 135 93-257 15-152 (280)
191 KOG0376|consensus 98.0 1.1E-05 2.3E-10 72.0 5.9 113 29-168 5-117 (476)
192 KOG4555|consensus 98.0 0.00012 2.6E-09 54.6 10.4 98 119-246 49-149 (175)
193 PF10300 DUF3808: Protein of u 98.0 0.0013 2.8E-08 60.4 19.0 196 6-243 168-378 (468)
194 PF13281 DUF4071: Domain of un 97.9 0.0011 2.4E-08 58.5 17.3 186 33-257 184-372 (374)
195 KOG0376|consensus 97.9 9.1E-06 2E-10 72.4 4.2 88 141-249 22-109 (476)
196 PF04184 ST7: ST7 protein; In 97.9 0.00089 1.9E-08 60.4 16.1 165 42-247 180-381 (539)
197 PF13512 TPR_18: Tetratricopep 97.9 0.00034 7.4E-09 53.2 11.6 106 114-249 11-136 (142)
198 PRK04841 transcriptional regul 97.9 0.00065 1.4E-08 67.3 16.8 157 42-243 464-643 (903)
199 PF13424 TPR_12: Tetratricopep 97.9 1.5E-05 3.2E-10 54.3 3.7 68 110-207 2-76 (78)
200 COG4105 ComL DNA uptake lipopr 97.9 0.0012 2.6E-08 54.8 15.4 152 64-252 33-207 (254)
201 KOG1130|consensus 97.9 0.00017 3.6E-09 63.5 10.8 192 45-242 109-345 (639)
202 PF00515 TPR_1: Tetratricopept 97.8 3.1E-05 6.7E-10 43.8 4.1 34 65-112 1-34 (34)
203 KOG0545|consensus 97.8 0.00013 2.9E-09 60.0 8.9 103 32-161 182-302 (329)
204 PF07719 TPR_2: Tetratricopept 97.8 4.9E-05 1.1E-09 42.8 4.8 34 65-112 1-34 (34)
205 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0028 6.1E-08 55.4 17.0 168 52-242 6-184 (321)
206 KOG2053|consensus 97.8 0.006 1.3E-07 58.5 19.6 191 42-245 21-259 (932)
207 KOG4555|consensus 97.7 0.0015 3.2E-08 48.9 12.5 84 95-208 59-146 (175)
208 PRK04841 transcriptional regul 97.7 0.002 4.3E-08 63.9 17.5 157 42-243 421-604 (903)
209 COG3118 Thioredoxin domain-con 97.7 0.0037 8.1E-08 53.0 15.9 156 30-237 136-297 (304)
210 PF13181 TPR_8: Tetratricopept 97.7 4.6E-05 1E-09 43.0 3.2 32 213-244 2-33 (34)
211 KOG2796|consensus 97.7 0.0059 1.3E-07 51.1 16.4 125 42-211 189-320 (366)
212 PF13281 DUF4071: Domain of un 97.6 0.0073 1.6E-07 53.4 17.5 184 43-254 153-347 (374)
213 KOG3081|consensus 97.6 0.012 2.6E-07 49.2 17.1 55 191-246 187-241 (299)
214 KOG2376|consensus 97.5 0.0017 3.6E-08 59.6 11.7 116 93-246 26-144 (652)
215 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.5E-09 40.2 3.9 31 158-208 2-32 (34)
216 PF05843 Suf: Suppressor of fo 97.5 0.0044 9.5E-08 53.1 13.6 121 45-208 15-138 (280)
217 COG4700 Uncharacterized protei 97.4 0.0074 1.6E-07 48.0 12.8 112 32-171 93-207 (251)
218 KOG1308|consensus 97.4 5.9E-05 1.3E-09 64.7 1.0 85 141-246 132-216 (377)
219 COG3898 Uncharacterized membra 97.4 0.035 7.6E-07 49.0 17.8 150 45-242 243-393 (531)
220 KOG0530|consensus 97.3 0.015 3.3E-07 48.6 14.5 160 45-247 57-222 (318)
221 PF04184 ST7: ST7 protein; In 97.3 0.0044 9.6E-08 56.0 12.1 49 190-238 272-321 (539)
222 PF04781 DUF627: Protein of un 97.3 0.0058 1.3E-07 44.3 10.4 87 34-126 2-91 (111)
223 KOG1308|consensus 97.3 0.00014 2.9E-09 62.5 2.2 96 33-155 119-214 (377)
224 KOG0530|consensus 97.3 0.039 8.6E-07 46.1 16.4 142 45-224 92-233 (318)
225 KOG1070|consensus 97.3 0.012 2.7E-07 58.9 15.4 154 49-244 1442-1596(1710)
226 KOG2053|consensus 97.2 0.011 2.5E-07 56.6 14.4 121 92-244 22-142 (932)
227 COG0790 FOG: TPR repeat, SEL1 97.2 0.045 9.8E-07 46.8 17.4 166 45-247 91-272 (292)
228 PF13176 TPR_7: Tetratricopept 97.2 0.00018 3.9E-09 41.4 1.7 29 214-242 1-29 (36)
229 PF13174 TPR_6: Tetratricopept 97.2 0.00045 9.7E-09 38.4 3.3 33 213-245 1-33 (33)
230 KOG0545|consensus 97.2 0.0089 1.9E-07 49.5 11.9 53 191-244 244-296 (329)
231 PF10300 DUF3808: Protein of u 97.2 0.0071 1.5E-07 55.6 12.5 125 96-242 205-335 (468)
232 PF04910 Tcf25: Transcriptiona 97.2 0.035 7.6E-07 49.3 16.2 156 56-244 31-225 (360)
233 COG3898 Uncharacterized membra 97.2 0.048 1E-06 48.2 16.4 99 90-208 165-294 (531)
234 KOG1070|consensus 97.1 0.053 1.1E-06 54.7 18.2 164 45-242 1472-1664(1710)
235 KOG1550|consensus 97.1 0.029 6.2E-07 52.8 16.2 156 47-242 228-394 (552)
236 KOG0551|consensus 97.1 0.0038 8.3E-08 53.6 9.3 118 31-165 84-209 (390)
237 KOG2610|consensus 97.1 0.012 2.6E-07 50.9 11.8 116 95-238 119-235 (491)
238 smart00028 TPR Tetratricopepti 97.1 0.0012 2.7E-08 35.4 4.1 32 213-244 2-33 (34)
239 KOG0551|consensus 97.1 0.0088 1.9E-07 51.5 10.7 82 140-242 98-183 (390)
240 KOG1586|consensus 97.1 0.1 2.2E-06 43.1 16.3 62 191-252 168-235 (288)
241 COG3118 Thioredoxin domain-con 97.1 0.065 1.4E-06 45.6 15.8 115 96-246 151-270 (304)
242 KOG3081|consensus 97.0 0.15 3.3E-06 42.8 17.6 132 91-251 149-281 (299)
243 COG0790 FOG: TPR repeat, SEL1 97.0 0.089 1.9E-06 45.0 17.0 163 45-243 55-222 (292)
244 KOG1585|consensus 96.9 0.065 1.4E-06 44.5 14.3 180 29-244 31-222 (308)
245 KOG0529|consensus 96.9 0.18 4E-06 44.7 17.9 174 47-247 45-230 (421)
246 KOG1941|consensus 96.9 0.016 3.4E-07 50.6 10.9 123 90-242 94-236 (518)
247 KOG3824|consensus 96.9 0.0028 6E-08 54.1 6.2 73 33-122 121-193 (472)
248 PF03704 BTAD: Bacterial trans 96.8 0.01 2.2E-07 45.4 8.7 49 191-240 76-124 (146)
249 PF14561 TPR_20: Tetratricopep 96.8 0.017 3.7E-07 40.5 8.8 75 143-238 8-84 (90)
250 PF02259 FAT: FAT domain; Int 96.7 0.1 2.2E-06 45.6 15.5 151 63-244 144-341 (352)
251 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.011 2.5E-07 37.0 6.6 41 66-120 2-42 (53)
252 KOG2047|consensus 96.7 0.22 4.8E-06 46.7 17.3 168 45-243 401-581 (835)
253 PF13174 TPR_6: Tetratricopept 96.7 0.0047 1E-07 34.1 4.5 33 66-112 1-33 (33)
254 PF14561 TPR_20: Tetratricopep 96.7 0.011 2.4E-07 41.6 7.1 53 195-248 6-58 (90)
255 KOG1550|consensus 96.7 0.081 1.8E-06 49.8 15.0 156 45-241 263-426 (552)
256 KOG4340|consensus 96.6 0.07 1.5E-06 45.6 12.8 134 91-235 156-333 (459)
257 KOG1941|consensus 96.6 0.094 2E-06 46.0 13.4 171 29-242 7-192 (518)
258 PF13176 TPR_7: Tetratricopept 96.6 0.0048 1E-07 35.3 3.9 29 159-207 1-29 (36)
259 PF08424 NRDE-2: NRDE-2, neces 96.5 0.14 3.1E-06 44.7 14.9 121 100-241 6-131 (321)
260 PF04781 DUF627: Protein of un 96.5 0.08 1.7E-06 38.4 10.9 45 196-241 63-107 (111)
261 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.0046 9.9E-08 38.8 3.4 40 214-253 3-42 (53)
262 KOG3824|consensus 96.4 0.01 2.2E-07 50.8 6.2 57 190-247 129-185 (472)
263 COG3914 Spy Predicted O-linked 96.4 0.17 3.7E-06 46.9 14.4 139 45-221 45-185 (620)
264 COG4976 Predicted methyltransf 96.3 0.0081 1.8E-07 49.2 5.3 57 190-247 8-64 (287)
265 PF12968 DUF3856: Domain of Un 96.3 0.18 3.9E-06 37.2 11.7 97 91-206 21-129 (144)
266 KOG2396|consensus 96.3 0.058 1.2E-06 49.0 10.7 90 97-216 89-178 (568)
267 PF08631 SPO22: Meiosis protei 96.2 0.64 1.4E-05 39.7 18.7 159 42-208 5-173 (278)
268 COG3914 Spy Predicted O-linked 96.1 0.072 1.6E-06 49.2 10.7 121 97-247 49-177 (620)
269 smart00028 TPR Tetratricopepti 96.0 0.013 2.9E-07 31.0 3.8 33 66-112 2-34 (34)
270 KOG4507|consensus 96.0 0.064 1.4E-06 49.7 9.9 92 96-218 624-716 (886)
271 KOG2047|consensus 95.9 1 2.2E-05 42.6 17.1 166 45-243 361-542 (835)
272 KOG2396|consensus 95.9 0.19 4E-06 45.8 12.0 96 48-166 88-183 (568)
273 PF03704 BTAD: Bacterial trans 95.7 0.12 2.6E-06 39.3 9.3 61 94-157 77-137 (146)
274 PF13374 TPR_10: Tetratricopep 95.7 0.016 3.5E-07 33.7 3.5 30 212-241 2-31 (42)
275 KOG0529|consensus 95.7 0.27 5.9E-06 43.7 12.3 144 46-217 90-234 (421)
276 PRK10941 hypothetical protein; 95.7 0.072 1.6E-06 45.3 8.4 61 190-251 194-254 (269)
277 KOG3364|consensus 95.5 0.058 1.3E-06 40.6 6.2 63 190-252 48-111 (149)
278 PF02259 FAT: FAT domain; Int 95.4 1.4 3.1E-05 38.3 16.0 148 42-208 158-340 (352)
279 KOG2471|consensus 95.4 0.094 2E-06 47.6 8.3 128 55-227 230-384 (696)
280 PF09613 HrpB1_HrpK: Bacterial 95.4 0.5 1.1E-05 36.8 11.3 95 45-165 24-118 (160)
281 PF09986 DUF2225: Uncharacteri 95.4 0.55 1.2E-05 38.5 12.3 85 113-220 118-208 (214)
282 KOG1586|consensus 95.3 0.67 1.4E-05 38.4 12.4 56 191-246 128-188 (288)
283 KOG1310|consensus 95.3 0.033 7.2E-07 50.9 5.4 91 45-156 388-478 (758)
284 KOG0985|consensus 95.3 0.9 1.9E-05 45.1 15.1 142 45-241 1089-1249(1666)
285 COG2976 Uncharacterized protei 95.0 0.83 1.8E-05 36.7 11.7 83 141-247 107-194 (207)
286 KOG3617|consensus 95.0 0.82 1.8E-05 44.4 13.5 172 29-239 912-1107(1416)
287 PF09986 DUF2225: Uncharacteri 94.9 0.29 6.2E-06 40.2 9.4 54 193-246 141-199 (214)
288 KOG4507|consensus 94.9 0.13 2.7E-06 47.8 7.8 91 141-252 625-716 (886)
289 KOG1310|consensus 94.8 0.14 3E-06 47.0 7.8 88 141-246 392-479 (758)
290 COG5191 Uncharacterized conser 94.8 0.11 2.4E-06 44.7 6.6 90 53-166 95-185 (435)
291 COG4976 Predicted methyltransf 94.5 0.07 1.5E-06 43.9 4.7 60 42-116 7-66 (287)
292 COG5191 Uncharacterized conser 94.3 0.1 2.2E-06 44.8 5.5 87 101-217 95-181 (435)
293 PRK10941 hypothetical protein; 94.3 0.41 8.8E-06 40.7 9.2 60 44-117 194-253 (269)
294 KOG3617|consensus 94.3 1.6 3.4E-05 42.6 13.6 32 210-241 965-996 (1416)
295 KOG2471|consensus 94.2 0.3 6.4E-06 44.6 8.3 121 93-242 220-365 (696)
296 PF07079 DUF1347: Protein of u 94.2 4.4 9.5E-05 36.9 15.9 47 190-238 475-521 (549)
297 KOG1839|consensus 94.1 0.22 4.7E-06 50.2 8.1 171 30-240 934-1127(1236)
298 KOG1585|consensus 93.6 3.8 8.3E-05 34.3 13.6 124 95-240 47-178 (308)
299 PF12862 Apc5: Anaphase-promot 93.4 0.16 3.4E-06 35.8 4.4 58 191-248 12-77 (94)
300 PF09613 HrpB1_HrpK: Bacterial 93.3 1.9 4.1E-05 33.6 10.6 81 141-243 28-108 (160)
301 KOG1914|consensus 93.3 6.9 0.00015 36.4 16.6 182 53-241 267-464 (656)
302 PF07720 TPR_3: Tetratricopept 93.1 0.23 5E-06 28.3 3.9 33 213-245 2-36 (36)
303 KOG1258|consensus 93.1 7.8 0.00017 36.3 16.9 158 44-226 310-489 (577)
304 PF07721 TPR_4: Tetratricopept 92.9 0.16 3.6E-06 26.5 3.0 24 213-236 2-25 (26)
305 PF09670 Cas_Cas02710: CRISPR- 92.7 5.6 0.00012 35.7 14.2 63 32-109 135-199 (379)
306 KOG4279|consensus 92.5 0.96 2.1E-05 43.4 9.2 74 45-127 257-334 (1226)
307 KOG1914|consensus 92.4 4.2 9.1E-05 37.8 12.9 63 55-132 10-72 (656)
308 PRK13184 pknD serine/threonine 92.4 9.7 0.00021 38.2 16.4 109 44-170 488-599 (932)
309 TIGR03504 FimV_Cterm FimV C-te 92.3 0.26 5.7E-06 29.5 3.6 26 215-240 2-27 (44)
310 PF11207 DUF2989: Protein of u 92.2 0.75 1.6E-05 37.2 7.1 57 155-232 139-198 (203)
311 PF10579 Rapsyn_N: Rapsyn N-te 92.1 2.1 4.5E-05 29.1 8.0 50 30-82 8-60 (80)
312 PF10373 EST1_DNA_bind: Est1 D 92.0 0.7 1.5E-05 39.0 7.4 62 142-224 1-62 (278)
313 TIGR02561 HrpB1_HrpK type III 91.9 3 6.5E-05 32.1 9.7 72 45-130 24-95 (153)
314 PF13374 TPR_10: Tetratricopep 91.8 0.41 9E-06 27.4 4.2 30 65-108 2-31 (42)
315 KOG3364|consensus 91.8 4.5 9.7E-05 30.7 10.4 82 65-167 32-115 (149)
316 PF12968 DUF3856: Domain of Un 91.5 4.4 9.6E-05 30.0 10.8 48 194-241 79-129 (144)
317 PF10516 SHNi-TPR: SHNi-TPR; 91.4 0.31 6.7E-06 28.2 3.1 30 213-242 2-31 (38)
318 PF10373 EST1_DNA_bind: Est1 D 90.9 0.64 1.4E-05 39.2 6.0 46 196-242 1-46 (278)
319 PF14863 Alkyl_sulf_dimr: Alky 90.7 1.5 3.1E-05 33.5 7.1 51 29-82 71-121 (141)
320 TIGR02561 HrpB1_HrpK type III 90.7 2 4.4E-05 33.0 7.8 67 142-229 29-95 (153)
321 PF10516 SHNi-TPR: SHNi-TPR; 90.4 0.73 1.6E-05 26.6 4.0 30 158-207 2-31 (38)
322 smart00386 HAT HAT (Half-A-TPR 89.9 0.78 1.7E-05 24.5 3.9 29 45-73 1-29 (33)
323 KOG4814|consensus 89.6 1.2 2.7E-05 42.0 6.9 60 191-250 368-432 (872)
324 COG3947 Response regulator con 89.4 1.5 3.3E-05 37.5 6.7 48 190-238 292-339 (361)
325 PF10602 RPN7: 26S proteasome 89.2 1.6 3.4E-05 34.7 6.6 63 158-240 37-101 (177)
326 PF07079 DUF1347: Protein of u 89.1 2.7 5.9E-05 38.2 8.4 48 31-82 465-512 (549)
327 PF15015 NYD-SP12_N: Spermatog 88.7 9 0.0002 34.7 11.3 50 191-241 242-291 (569)
328 PF08631 SPO22: Meiosis protei 88.3 15 0.00032 31.3 20.0 192 32-239 39-273 (278)
329 PF07720 TPR_3: Tetratricopept 87.8 2.1 4.7E-05 24.3 4.7 34 65-112 1-36 (36)
330 PF12854 PPR_1: PPR repeat 87.7 1.6 3.4E-05 24.3 4.1 30 206-237 3-32 (34)
331 PF11846 DUF3366: Domain of un 87.7 2 4.4E-05 34.4 6.4 53 190-244 124-176 (193)
332 PF12753 Nro1: Nuclear pore co 87.5 1.8 3.9E-05 38.6 6.2 59 46-108 333-391 (404)
333 COG3629 DnrI DNA-binding trans 87.5 3.4 7.3E-05 35.3 7.7 51 190-241 166-216 (280)
334 KOG2422|consensus 87.5 26 0.00056 33.1 18.3 165 45-243 252-450 (665)
335 PF04910 Tcf25: Transcriptiona 87.2 21 0.00046 31.8 15.0 116 105-240 32-167 (360)
336 KOG2300|consensus 86.5 27 0.00058 32.3 15.3 168 45-253 337-526 (629)
337 KOG4014|consensus 86.1 16 0.00035 29.4 11.7 169 45-242 49-234 (248)
338 smart00386 HAT HAT (Half-A-TPR 85.6 1.9 4.1E-05 22.8 3.7 27 95-121 3-29 (33)
339 PF12862 Apc5: Anaphase-promot 85.6 2.8 6.2E-05 29.3 5.5 55 43-112 11-74 (94)
340 COG5536 BET4 Protein prenyltra 85.6 19 0.00042 30.8 11.0 170 47-247 48-228 (328)
341 PF10579 Rapsyn_N: Rapsyn N-te 84.8 4 8.7E-05 27.7 5.5 51 190-241 19-72 (80)
342 COG2912 Uncharacterized conser 84.5 1.9 4.1E-05 36.5 4.8 59 190-249 194-252 (269)
343 KOG2300|consensus 84.0 17 0.00038 33.5 10.7 63 156-238 366-430 (629)
344 PF10255 Paf67: RNA polymerase 82.4 25 0.00054 31.8 11.2 50 190-240 135-192 (404)
345 COG3629 DnrI DNA-binding trans 81.5 8 0.00017 33.1 7.5 47 33-82 158-204 (280)
346 COG5107 RNA14 Pre-mRNA 3'-end 81.4 35 0.00076 31.4 11.6 141 53-206 30-190 (660)
347 KOG4014|consensus 81.4 26 0.00057 28.2 11.7 126 91-242 47-198 (248)
348 COG2912 Uncharacterized conser 81.0 11 0.00025 31.9 8.1 64 93-166 195-258 (269)
349 COG5536 BET4 Protein prenyltra 80.6 8.7 0.00019 32.8 7.1 160 47-238 90-257 (328)
350 KOG0890|consensus 80.4 42 0.00092 36.9 13.3 149 33-208 1674-1835(2382)
351 KOG4814|consensus 80.3 29 0.00062 33.3 10.9 50 191-241 408-457 (872)
352 PRK15180 Vi polysaccharide bio 80.0 30 0.00065 32.1 10.7 50 30-82 291-340 (831)
353 PF01239 PPTA: Protein prenylt 79.5 7.7 0.00017 20.8 4.6 28 98-125 2-29 (31)
354 smart00671 SEL1 Sel1-like repe 78.1 7.2 0.00016 21.2 4.4 18 190-207 18-35 (36)
355 COG4455 ImpE Protein of avirul 76.2 16 0.00034 30.3 7.2 68 35-119 8-75 (273)
356 KOG0890|consensus 75.4 44 0.00095 36.8 11.8 115 64-223 1669-1800(2382)
357 COG4941 Predicted RNA polymera 75.1 59 0.0013 28.7 16.2 173 45-248 210-401 (415)
358 cd02682 MIT_AAA_Arch MIT: doma 75.1 22 0.00049 23.9 7.3 27 90-116 24-50 (75)
359 PF14863 Alkyl_sulf_dimr: Alky 74.9 16 0.00035 27.8 6.7 35 95-129 86-120 (141)
360 cd02682 MIT_AAA_Arch MIT: doma 74.8 3.7 7.9E-05 27.7 2.8 17 190-206 19-35 (75)
361 cd02681 MIT_calpain7_1 MIT: do 74.0 6.4 0.00014 26.6 3.9 18 189-206 18-35 (76)
362 PF08238 Sel1: Sel1 repeat; I 74.0 7.6 0.00016 21.6 3.8 30 213-242 2-38 (39)
363 PF12753 Nro1: Nuclear pore co 73.9 5.6 0.00012 35.5 4.5 49 191-242 332-392 (404)
364 PF10602 RPN7: 26S proteasome 73.9 42 0.00091 26.5 10.6 98 114-241 37-142 (177)
365 PRK13184 pknD serine/threonine 73.7 29 0.00062 35.0 9.7 97 141-252 493-592 (932)
366 KOG1538|consensus 73.6 91 0.002 30.2 14.1 45 190-238 786-830 (1081)
367 KOG3616|consensus 73.3 29 0.00063 33.9 9.1 43 191-235 805-847 (1636)
368 TIGR02710 CRISPR-associated pr 72.8 72 0.0016 28.7 12.1 56 34-104 136-196 (380)
369 PRK15180 Vi polysaccharide bio 72.8 34 0.00073 31.8 9.1 50 93-142 303-352 (831)
370 PF13226 DUF4034: Domain of un 72.3 62 0.0013 27.7 12.2 128 34-171 6-147 (277)
371 KOG1839|consensus 72.2 18 0.0004 37.1 8.0 137 97-257 956-1102(1236)
372 KOG1464|consensus 72.1 63 0.0014 27.8 14.9 180 45-244 41-263 (440)
373 KOG3807|consensus 71.7 61 0.0013 28.7 10.1 29 93-121 198-226 (556)
374 COG2976 Uncharacterized protei 71.6 53 0.0011 26.6 15.7 113 49-208 70-190 (207)
375 TIGR03504 FimV_Cterm FimV C-te 71.3 7.5 0.00016 23.2 3.3 25 69-107 3-27 (44)
376 PF00244 14-3-3: 14-3-3 protei 71.1 53 0.0011 27.3 9.6 34 42-76 13-47 (236)
377 PF15015 NYD-SP12_N: Spermatog 70.9 16 0.00034 33.2 6.5 84 32-132 180-281 (569)
378 COG4649 Uncharacterized protei 70.7 53 0.0011 26.3 13.5 148 28-224 58-212 (221)
379 PF13041 PPR_2: PPR repeat fam 70.7 12 0.00025 22.4 4.3 30 212-241 3-32 (50)
380 PF01535 PPR: PPR repeat; Int 69.7 8.4 0.00018 20.0 3.1 27 215-241 3-29 (31)
381 PF10345 Cohesin_load: Cohesin 69.1 97 0.0021 29.6 12.1 81 142-242 40-129 (608)
382 KOG1258|consensus 68.9 1.1E+02 0.0023 29.1 13.7 112 90-232 308-420 (577)
383 smart00101 14_3_3 14-3-3 homol 68.1 58 0.0013 27.3 9.1 74 113-205 118-199 (244)
384 PF04053 Coatomer_WDAD: Coatom 67.9 90 0.0019 28.7 11.1 19 220-238 410-428 (443)
385 PRK15326 type III secretion sy 67.1 37 0.0008 23.1 8.4 37 91-130 19-55 (80)
386 PF09205 DUF1955: Domain of un 66.1 39 0.00085 25.7 6.8 50 45-108 100-149 (161)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 66.1 52 0.0011 24.4 11.3 46 194-239 80-126 (126)
388 cd02680 MIT_calpain7_2 MIT: do 66.1 13 0.00028 25.0 4.0 18 189-206 18-35 (75)
389 COG3947 Response regulator con 65.7 38 0.00083 29.3 7.5 40 94-133 294-333 (361)
390 COG4455 ImpE Protein of avirul 65.3 21 0.00045 29.6 5.7 56 191-247 15-70 (273)
391 KOG4279|consensus 65.1 9.3 0.0002 37.1 4.2 105 116-242 243-351 (1226)
392 KOG0546|consensus 64.1 8.4 0.00018 33.9 3.4 68 45-126 289-356 (372)
393 TIGR00756 PPR pentatricopeptid 63.9 18 0.00039 19.0 3.8 27 215-241 3-29 (35)
394 KOG0985|consensus 63.1 98 0.0021 31.7 10.6 66 155-246 1102-1167(1666)
395 PF12309 KBP_C: KIF-1 binding 63.0 1.1E+02 0.0025 27.3 14.7 36 212-247 300-344 (371)
396 cd09247 BRO1_Alix_like_2 Prote 62.9 1.1E+02 0.0024 27.0 12.1 28 213-240 254-281 (346)
397 cd02681 MIT_calpain7_1 MIT: do 62.1 7.9 0.00017 26.1 2.4 16 192-207 28-43 (76)
398 cd02677 MIT_SNX15 MIT: domain 62.1 11 0.00024 25.3 3.1 16 191-206 20-35 (75)
399 PF11817 Foie-gras_1: Foie gra 61.0 48 0.001 27.6 7.5 50 190-239 191-245 (247)
400 PF10255 Paf67: RNA polymerase 60.6 16 0.00035 33.0 4.7 47 122-172 131-179 (404)
401 KOG0546|consensus 59.9 4.2 9.1E-05 35.7 0.9 56 191-247 289-344 (372)
402 PF04053 Coatomer_WDAD: Coatom 58.8 78 0.0017 29.1 9.0 19 63-81 345-363 (443)
403 PF13226 DUF4034: Domain of un 58.5 1E+02 0.0022 26.4 9.0 81 50-130 62-150 (277)
404 cd09245 BRO1_UmRIM23-like Prot 57.8 1.5E+02 0.0033 27.0 11.3 29 212-240 296-324 (413)
405 PF10731 Anophelin: Thrombin i 55.7 13 0.00028 23.7 2.3 18 1-18 1-18 (65)
406 KOG0128|consensus 54.7 2.3E+02 0.005 28.2 12.2 117 96-241 96-219 (881)
407 PF02184 HAT: HAT (Half-A-TPR) 54.3 28 0.0006 19.3 3.3 27 46-73 2-28 (32)
408 cd09242 BRO1_ScBro1_like Prote 53.7 1.6E+02 0.0034 26.0 13.3 27 214-240 246-272 (348)
409 cd02683 MIT_1 MIT: domain cont 52.6 69 0.0015 21.5 7.6 24 90-113 24-47 (77)
410 PF07219 HemY_N: HemY protein 52.5 77 0.0017 22.7 6.5 45 32-79 63-107 (108)
411 PF09205 DUF1955: Domain of un 51.7 1.1E+02 0.0023 23.5 7.9 51 191-242 100-150 (161)
412 KOG4151|consensus 50.4 46 0.00099 32.4 6.1 59 188-247 104-162 (748)
413 KOG3783|consensus 49.5 2.3E+02 0.005 26.7 10.7 79 141-242 251-333 (546)
414 COG2909 MalT ATP-dependent tra 49.0 2.9E+02 0.0063 27.7 17.4 160 45-243 472-649 (894)
415 PF09797 NatB_MDM20: N-acetylt 48.1 43 0.00094 29.7 5.5 38 45-82 197-234 (365)
416 cd02679 MIT_spastin MIT: domai 47.9 22 0.00048 24.2 2.8 18 191-208 3-20 (79)
417 PF03097 BRO1: BRO1-like domai 47.8 2E+02 0.0043 25.5 14.0 44 65-108 107-152 (377)
418 PF11846 DUF3366: Domain of un 47.2 71 0.0015 25.3 6.2 53 45-112 125-177 (193)
419 PF14689 SPOB_a: Sensor_kinase 47.0 49 0.0011 21.1 4.2 31 210-240 21-51 (62)
420 smart00299 CLH Clathrin heavy 45.5 1.2E+02 0.0026 22.3 11.3 35 45-79 21-55 (140)
421 PF09797 NatB_MDM20: N-acetylt 45.2 62 0.0014 28.6 6.0 46 191-237 197-242 (365)
422 KOG1464|consensus 45.0 75 0.0016 27.3 6.0 49 191-240 41-93 (440)
423 PF11817 Foie-gras_1: Foie gra 43.8 49 0.0011 27.6 4.9 49 193-241 154-207 (247)
424 KOG2581|consensus 42.0 2.4E+02 0.0051 25.8 8.8 55 191-245 223-280 (493)
425 smart00299 CLH Clathrin heavy 40.5 1.5E+02 0.0032 21.8 7.1 30 141-170 25-54 (140)
426 TIGR02833 spore_III_AB stage I 40.5 1.8E+02 0.0039 22.8 11.0 151 3-167 5-161 (170)
427 cd09241 BRO1_ScRim20-like Prot 40.1 2.7E+02 0.0058 24.7 13.4 15 66-80 107-121 (355)
428 PF11207 DUF2989: Protein of u 39.9 2.1E+02 0.0045 23.3 12.8 59 194-253 123-182 (203)
429 KOG0687|consensus 39.6 2.7E+02 0.0059 24.6 12.1 124 90-241 82-210 (393)
430 KOG2908|consensus 39.0 1.5E+02 0.0032 26.3 7.0 78 45-130 89-174 (380)
431 cd02683 MIT_1 MIT: domain cont 38.7 55 0.0012 22.0 3.6 44 193-245 3-46 (77)
432 KOG2114|consensus 38.5 3E+02 0.0064 27.6 9.5 32 191-225 504-535 (933)
433 KOG2062|consensus 38.4 2.5E+02 0.0055 27.7 8.9 157 62-240 56-238 (929)
434 PRK08307 stage III sporulation 38.2 2E+02 0.0042 22.6 11.3 150 4-167 7-162 (171)
435 PF13812 PPR_3: Pentatricopept 37.6 64 0.0014 16.8 3.8 27 214-240 3-29 (34)
436 KOG2997|consensus 37.5 51 0.0011 28.8 3.9 23 190-214 32-54 (366)
437 PF13041 PPR_2: PPR repeat fam 37.1 89 0.0019 18.4 5.7 28 191-220 17-46 (50)
438 PF05053 Menin: Menin; InterP 35.9 1.3E+02 0.0029 28.5 6.6 48 191-238 293-344 (618)
439 PF10952 DUF2753: Protein of u 35.7 1.9E+02 0.0041 21.7 6.3 56 191-246 15-88 (140)
440 KOG0276|consensus 35.7 1.3E+02 0.0029 28.8 6.6 46 191-242 651-696 (794)
441 KOG2114|consensus 35.6 4.7E+02 0.01 26.3 13.1 172 31-237 337-515 (933)
442 PF05053 Menin: Menin; InterP 35.5 1.2E+02 0.0025 28.8 6.1 45 142-206 298-347 (618)
443 COG5187 RPN7 26S proteasome re 34.9 1E+02 0.0022 26.9 5.2 49 193-241 91-144 (412)
444 PF09548 Spore_III_AB: Stage I 33.9 2.3E+02 0.0049 22.1 10.6 73 94-167 88-161 (170)
445 PF02064 MAS20: MAS20 protein 33.7 78 0.0017 23.4 4.0 30 215-244 66-95 (121)
446 PF10345 Cohesin_load: Cohesin 33.7 4.3E+02 0.0094 25.3 17.2 157 46-240 36-207 (608)
447 KOG2758|consensus 33.6 3.4E+02 0.0074 24.0 14.3 65 174-240 252-316 (432)
448 cd09240 BRO1_Alix Protein-inte 32.9 3.4E+02 0.0075 23.9 14.8 26 215-240 258-283 (346)
449 PRK15490 Vi polysaccharide bio 32.0 3.9E+02 0.0085 25.6 9.1 48 30-82 44-91 (578)
450 COG5159 RPN6 26S proteasome re 31.1 3.6E+02 0.0078 23.6 14.6 52 190-242 138-195 (421)
451 TIGR03362 VI_chp_7 type VI sec 31.0 1.5E+02 0.0032 25.7 5.9 49 190-240 112-160 (301)
452 COG5107 RNA14 Pre-mRNA 3'-end 30.8 4.5E+02 0.0097 24.6 12.8 50 190-240 445-494 (660)
453 cd09034 BRO1_Alix_like Protein 30.7 3.6E+02 0.0079 23.5 14.2 42 66-107 112-156 (345)
454 PF04212 MIT: MIT (microtubule 28.9 1.6E+02 0.0035 18.8 7.9 24 89-112 22-45 (69)
455 TIGR03060 PS_II_psb29 photosys 28.8 76 0.0016 26.0 3.5 20 1-20 137-156 (214)
456 cd02679 MIT_spastin MIT: domai 27.8 1.8E+02 0.004 19.7 4.7 44 45-110 3-46 (79)
457 PLN03060 inositol phosphatase- 27.4 84 0.0018 25.6 3.5 17 1-17 136-152 (206)
458 cd00280 TRFH Telomeric Repeat 27.2 78 0.0017 25.5 3.2 18 190-208 124-141 (200)
459 PF14852 Fis1_TPR_N: Fis1 N-te 26.9 1.3E+02 0.0027 16.9 4.1 31 213-243 2-35 (35)
460 PF04190 DUF410: Protein of un 26.5 3.9E+02 0.0084 22.5 15.4 83 45-134 24-111 (260)
461 KOG2041|consensus 26.1 6.6E+02 0.014 25.0 12.0 140 51-238 679-822 (1189)
462 COG4941 Predicted RNA polymera 25.8 3.9E+02 0.0085 23.8 7.4 39 118-166 370-408 (415)
463 KOG0687|consensus 25.2 1.7E+02 0.0036 25.9 5.0 29 212-240 104-132 (393)
464 TIGR02996 rpt_mate_G_obs repea 24.7 1.2E+02 0.0027 17.8 2.9 29 144-172 3-31 (42)
465 PF02532 PsbI: Photosystem II 24.5 80 0.0017 17.8 2.0 17 5-21 13-29 (36)
466 COG4259 Uncharacterized protei 24.0 2.8E+02 0.0061 20.0 9.8 71 28-114 32-107 (121)
467 PF11131 PhrC_PhrF: Rap-phr ex 23.2 88 0.0019 17.7 2.0 11 3-13 3-13 (37)
468 PF07980 SusD: SusD family; I 22.8 1.4E+02 0.003 24.5 4.2 29 212-240 133-161 (266)
469 COG2909 MalT ATP-dependent tra 22.8 8.1E+02 0.017 24.8 14.5 52 190-241 471-526 (894)
470 cd02678 MIT_VPS4 MIT: domain c 22.6 2.4E+02 0.0051 18.6 8.0 24 89-112 23-46 (75)
471 PF14276 DUF4363: Domain of un 22.6 3E+02 0.0066 19.8 8.5 28 29-59 29-56 (121)
472 PF10366 Vps39_1: Vacuolar sor 21.7 1.5E+02 0.0033 21.3 3.7 26 215-240 42-67 (108)
473 PRK13266 Thf1-like protein; Re 21.7 1.4E+02 0.0029 24.8 3.7 19 1-19 139-157 (225)
474 KOG3783|consensus 21.2 7.1E+02 0.015 23.6 15.6 147 32-219 193-344 (546)
475 PF07840 FadR_C: FadR C-termin 21.2 2.1E+02 0.0046 22.4 4.6 17 51-67 9-25 (164)
476 KOG4459|consensus 21.1 1.8E+02 0.0038 26.8 4.6 62 92-169 146-207 (471)
477 PF00244 14-3-3: 14-3-3 protei 21.0 4.8E+02 0.01 21.6 15.9 49 193-241 142-198 (236)
478 KOG2908|consensus 20.8 6.1E+02 0.013 22.6 8.3 78 94-174 90-174 (380)
479 PRK08307 stage III sporulation 20.4 3.5E+02 0.0075 21.2 5.8 70 47-124 90-163 (171)
480 PF07219 HemY_N: HemY protein 20.2 3.3E+02 0.0071 19.3 8.1 18 96-113 76-93 (108)
481 PHA02537 M terminase endonucle 20.1 5.1E+02 0.011 21.5 10.1 29 190-220 191-219 (230)
482 KOG3616|consensus 20.0 9E+02 0.02 24.3 14.9 19 190-208 1008-1026(1636)
No 1
>KOG4626|consensus
Probab=99.88 E-value=2.6e-21 Score=172.99 Aligned_cols=171 Identities=19% Similarity=0.170 Sum_probs=129.6
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.. |..+-||.-|+++++.+|+-++++.+||.++...|+.. +|...|.+||.+.|+++++.+++|.
T Consensus 298 eq-G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~--------------ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 298 EQ-GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT--------------EAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cc-ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH--------------HHHHHHHHHHHhCCccHHHHHHHHH
Confidence 44 78888888888888888888888888888888777765 6666666666666666666666666
Q ss_pred HHHHhhchhhHHH------------------------HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH
Q psy9159 122 CVGANGQFQSLKE------------------------KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE 177 (259)
Q Consensus 122 ~~~~~~~~~~~~~------------------------~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~ 177 (259)
++...|.++.+.. +-++..+|+.+|++||+++|+.+.++.++|..|.++
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~------- 435 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM------- 435 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-------
Confidence 6665555442211 011122566777777777777777777777777665
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 178 RKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 178 ~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
|+...|+.+|.+||.++| -..+++.+||.+|...|+..+|+..|+.++.++|+.++.
T Consensus 436 -------------g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 436 -------------GDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred -------------hhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 789999999999999999 679999999999999999999999999999999998873
No 2
>KOG4626|consensus
Probab=99.87 E-value=1.1e-21 Score=175.44 Aligned_cols=200 Identities=19% Similarity=0.166 Sum_probs=167.9
Q ss_pred HHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH---------HHHHHH
Q psy9159 36 DRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE---------ASEKYI 95 (259)
Q Consensus 36 ~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~---------~~~~~~ 95 (259)
...|. .+ |+..+|+..|+++++++|+.+++|++||.+|..++.+++. ++... .-.+.+
T Consensus 225 g~~f~-~~-Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 225 GCVFN-AQ-GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred chHHh-hc-chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence 34442 55 9999999999999999999999999999999998877631 11100 124568
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~ 175 (259)
+-|+..|++||+++|+.++++.++|.++...|+.. ++..+|.+||.+.|+++.+.++||.++.+.+.++.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~----------ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT----------EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 99999999999999999999999999999998876 56789999999999999999999999999988765
Q ss_pred HHHHHHHHHhc--------------CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 176 FERKIAVLIVS--------------DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 176 ~~~~~~~~~~~--------------~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
..+....++-- ...+|++++|+.||+.|+.++| ...+++.++|.+|..+|+.++|+.+|.+|+.+
T Consensus 373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 44333222110 0237999999999999999999 67999999999999999999999999999999
Q ss_pred CCCCccc
Q psy9159 242 PVVSYES 248 (259)
Q Consensus 242 ~p~~~~~ 248 (259)
+|.-.|.
T Consensus 452 nPt~AeA 458 (966)
T KOG4626|consen 452 NPTFAEA 458 (966)
T ss_pred CcHHHHH
Confidence 9988754
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.3e-19 Score=167.46 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++++|+..+++++..+|+++..++.+|.++...|++. +|+..++++++++|+++.++..+|.++.
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~--------------eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD--------------KAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888777764 8888888888888888888888888888
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..|++. .|...++++++++|++..++..+|.+++.. |++++|+..|++++
T Consensus 411 ~~g~~~----------~A~~~~~kal~l~P~~~~~~~~la~~~~~~--------------------g~~~eA~~~~~~al 460 (615)
T TIGR00990 411 IKGEFA----------QAGKDYQKSIDLDPDFIFSHIQLGVTQYKE--------------------GSIASSMATFRRCK 460 (615)
T ss_pred HcCCHH----------HHHHHHHHHHHcCccCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence 887776 456788888888888888888888877764 88999999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
++.| +++.++..+|.++..+|++++|++.|+++++++|.+..
T Consensus 461 ~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 461 KNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 9999 77999999999999999999999999999999987543
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.3e-19 Score=167.43 Aligned_cols=187 Identities=16% Similarity=0.148 Sum_probs=160.0
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
+..+..+. .. |++++|+..++++++.+|+++++++.+|.++...|++. +|+..++++++++|+
T Consensus 369 ~~la~~~~--~~-g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------------~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 369 IKRASMNL--EL-GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA--------------QAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCcc
Confidence 44454555 55 99999999999999999999999999999999999875 999999999999999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC---
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--- 188 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--- 188 (259)
+..++..+|.++...|++. .+...++++++++|+++.++..+|.++...++++...+.+..++...+
T Consensus 432 ~~~~~~~la~~~~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIA----------SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred CHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999887 567899999999999999999999999988876544333322221110
Q ss_pred ------------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 189 ------------------DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 189 ------------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
..|++++|+.+++++++++| ++..++..+|.++..+|++++|+++|++++++.+...
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 14899999999999999999 7788899999999999999999999999999986644
No 5
>KOG1125|consensus
Probab=99.82 E-value=3.6e-19 Score=158.35 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=146.1
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
++-++++..++ .+ |+..+|.-+|+.+++.+|.+.++|..||.+....++.. .|+..+++|+++
T Consensus 286 pdPf~eG~~lm--~n-G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~--------------~ai~AL~rcl~L 348 (579)
T KOG1125|consen 286 PDPFKEGCNLM--KN-GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ--------------NAISALRRCLEL 348 (579)
T ss_pred CChHHHHHHHH--hc-CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH--------------HHHHHHHHHHhc
Confidence 34578899999 77 99999999999999999999999999999999877654 999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHH----------------------------------------------------
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKI---------------------------------------------------- 136 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~---------------------------------------------------- 136 (259)
+|+|-+++..||+.+...|.-..+...+
T Consensus 349 dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 349 DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999987765432221100
Q ss_pred ---------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 137 ---------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 137 ---------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
.+..++.++|+-||..+|+|...|..||..+.. ..+.+|||..|.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN--------------------~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN--------------------GNRSEEAISAYN 488 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC--------------------CcccHHHHHHHH
Confidence 011233455555555555555555555554322 478999999999
Q ss_pred HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
+|++|.| .+++++++||.+++.+|-|+||+++|-.||.+.+.+...+
T Consensus 489 rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 489 RALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred HHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 9999999 7899999999999999999999999999999998855443
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.7e-18 Score=161.28 Aligned_cols=186 Identities=15% Similarity=0.066 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+.+++|+..++++++.+|+++.++..+|.+|..++.... ....+.+++|+..++++++++|+++.+|..+|.++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-----~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-----FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 678999999999999999999999999999987765310 012344679999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcC--------------CCC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD--------------LDE 190 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 190 (259)
..|++. +|...+++|++++|+++.+|+.+|.++...|+.+.....+..++... ...
T Consensus 350 ~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 350 IHSEYI----------VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 888876 56789999999999999999999999988876542222222111110 114
Q ss_pred CcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 191 PTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
|++++|+.+++++++.+ | +.+..+..+|.+|..+|++++|+..++++...+|.+.
T Consensus 420 g~~eeA~~~~~~~l~~~~p-~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQ-DNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred cCHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 78888888888888775 5 5677788888888888888888888888777666543
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=8.5e-18 Score=137.52 Aligned_cols=167 Identities=20% Similarity=0.228 Sum_probs=146.4
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
..+..++ .. |++++|+..++++++.+|+++.++..+|.++...|++. +|+..++++++..|++
T Consensus 36 ~la~~~~--~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~--------------~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 36 QLALGYL--EQ-GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE--------------KAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHH--HC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhhCCCC
Confidence 3444555 56 99999999999999999999999999999999999875 9999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC--CCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA--PKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~--P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (259)
+.++..+|.++...|++. .+...+++++... |.....+..+|.++...
T Consensus 99 ~~~~~~~~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------- 148 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYE----------QAMQQFEQAIEDPLYPQPARSLENAGLCALKA-------------------- 148 (234)
T ss_pred HHHHHHHHHHHHHcccHH----------HHHHHHHHHHhccccccchHHHHHHHHHHHHc--------------------
Confidence 999999999999888876 4567888888754 56677889999888764
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|++++|+.++.++++.+| +....+..+|.++...|++++|++++++++++.|.+++
T Consensus 149 g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred CCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 889999999999999999 67888999999999999999999999999999765543
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=7.6e-18 Score=145.22 Aligned_cols=181 Identities=18% Similarity=0.063 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++++|+..|+++++.+|+++++++.+|.++...|++. +|++.++++++++|++..++.++|.++.
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD--------------AAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888765 8888888888888888888888888888
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC-----------CCCcH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL-----------DEPTA 193 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~ 193 (259)
..|++. .+.+.++++++++|+++.....+. +....++.+.....+.......+ ..|+.
T Consensus 144 ~~g~~~----------eA~~~~~~al~~~P~~~~~~~~~~-l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~ 212 (296)
T PRK11189 144 YGGRYE----------LAQDDLLAFYQDDPNDPYRALWLY-LAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKI 212 (296)
T ss_pred HCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHH-HHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCC
Confidence 888776 467888888888888873211111 11111111111111111000000 02333
Q ss_pred --HHHH----HHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC-CCccchhh
Q psy9159 194 --EDAI----ANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV-VSYESHDL 251 (259)
Q Consensus 194 --~eAi----~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p-~~~~~~~~ 251 (259)
++++ +.++.+++++| ....+|++||.++..+|++++|+.+|++|++++| +..+..-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAE-RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 2233 33334446677 5678999999999999999999999999999996 55554433
No 9
>KOG1155|consensus
Probab=99.79 E-value=4.1e-18 Score=148.21 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
++++++|+.+|+++++.+|....+|..+|-=|..|.+.. .|++.|++|++++|.+..+|+.+|+++
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~--------------AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH--------------AAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH--------------HHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 489999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
..++... -+.-+++||+++.|+|+..|..||.+|.++ ++.++||+||++|
T Consensus 409 eim~Mh~----------YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--------------------~~~~eAiKCykra 458 (559)
T KOG1155|consen 409 EIMKMHF----------YALYYFQKALELKPNDSRLWVALGECYEKL--------------------NRLEEAIKCYKRA 458 (559)
T ss_pred HHhcchH----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHh--------------------ccHHHHHHHHHHH
Confidence 8877643 356889999999999999999999999775 7899999999999
Q ss_pred HhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 204 EELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 204 i~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+.... -+..++..||..|..+++.++|..+|++.++
T Consensus 459 i~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 459 ILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred Hhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99987 4578899999999999999999999999988
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.4e-17 Score=162.27 Aligned_cols=170 Identities=11% Similarity=0.029 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcH------HHHH---HHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDK------EASE---KYILQGIEYAKK 104 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~------~~~~---~~~~~A~~~~~k 104 (259)
|++++|+..++++....|.+ ..++.+|.++...|+..+. +... .... +.+++|+..+++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 56666666666655443333 3345555555555544320 0000 0112 456799999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159 105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI 184 (259)
Q Consensus 105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 184 (259)
+++++|+ +.++..+|.++...|++. ++...++++++++|+++.++..+|.++...
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~d----------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-------------- 656 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVP----------AAVSDLRAALELEPNNSNYQAALGYALWDS-------------- 656 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------
Confidence 9999996 899999999999998887 567899999999999999999999988774
Q ss_pred hcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 185 VSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 185 ~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|++++|+.+|++|++++| +++.++.++|.++..+|++++|+..|+++++++|.+..
T Consensus 657 ------G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 657 ------GDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred ------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 889999999999999999 78999999999999999999999999999999998765
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.2e-17 Score=155.61 Aligned_cols=171 Identities=16% Similarity=0.049 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+++++|+..++++++.+|++++++..+|.++...|++. +|+..++++++++|+++.+|+.+|.++.
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI--------------VGSLLFKQANLLSPISADIKYYYGWNLF 383 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999988865 9999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc---------------CCC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS---------------DLD 189 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 189 (259)
..|++. +|...++++++++|.++.+++.++.+++..++++.....+..++.. ...
T Consensus 384 ~~G~~~----------eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 384 MAGQLE----------EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HCCCHH----------HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 999887 5678999999999999888777776676666654332222211110 012
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|++++|+..+.+.....| ....++..++..|...|+ +|...+++.++..
T Consensus 454 ~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 454 KGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred CCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 6999999999999999999 667778889999998885 6666666655543
No 12
>KOG1126|consensus
Probab=99.77 E-value=1.4e-18 Score=156.77 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=124.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159 55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE 134 (259)
Q Consensus 55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~ 134 (259)
+..+..+|+.|+.|..+|.+|.-.+++. .|+..+++|+.+||+++-+|..+|.=+....+++
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~--------------~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d---- 472 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHD--------------TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD---- 472 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHH--------------HHHHHHHHhhccCCccchhhhhcCChhhhhHHHH----
Confidence 3445567888888888888887776654 9999999999999999888877776665555554
Q ss_pred HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159 135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN 214 (259)
Q Consensus 135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~ 214 (259)
.+..+|++||.++|.|..+||.+|.+|.+. ++++.|.-+|++|++++| .+...
T Consensus 473 ------~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq--------------------ek~e~Ae~~fqkA~~INP-~nsvi 525 (638)
T KOG1126|consen 473 ------KAMKSFRKALGVDPRHYNAWYGLGTVYLKQ--------------------EKLEFAEFHFQKAVEINP-SNSVI 525 (638)
T ss_pred ------hHHHHHHhhhcCCchhhHHHHhhhhheecc--------------------chhhHHHHHHHhhhcCCc-cchhH
Confidence 678999999999999999999999999874 778888889999999988 67777
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
...+|..+..+|+.++|+..|++|+-++|.|+-.+
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 88888888888988999999999988888887543
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=3.6e-17 Score=131.31 Aligned_cols=168 Identities=21% Similarity=0.155 Sum_probs=148.3
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
++.+-.++ .. |++..|...++++++.||++..+|..+|.+|...|..+ .|.+.|++|+.++|+
T Consensus 39 lqLal~YL--~~-gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~--------------~A~e~YrkAlsl~p~ 101 (250)
T COG3063 39 LQLALGYL--QQ-GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND--------------LADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHH--HC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh--------------hHHHHHHHHHhcCCC
Confidence 55566666 56 99999999999999999999999999999999999865 999999999999999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
+.+++.++|..+...|.++ .+...|++|+.. -|..+.+|-++|.|-.+.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~----------eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~------------------- 152 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPE----------EAMQQFERALADPAYGEPSDTLENLGLCALKA------------------- 152 (250)
T ss_pred ccchhhhhhHHHHhCCChH----------HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-------------------
Confidence 9999999999999999887 456788888763 345668899999887764
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|+++.|.++|+++++++| +++.+...++..++..|++..|.-.+++.....+-+.+
T Consensus 153 -gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 153 -GQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred -CCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 889999999999999999 78899999999999999999999999998877665444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=3.5e-17 Score=155.08 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=141.5
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.. |++++|+..+.+++..+|+++.++..+|.++...|++.+ -..+|+..++++++++|+++.++..+|.
T Consensus 224 ~~-g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e----------A~~~A~~~~~~Al~l~P~~~~a~~~lg~ 292 (656)
T PRK15174 224 AV-GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE----------AKLQAAEHWRHALQFNSDNVRIVTLYAD 292 (656)
T ss_pred HC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh----------hHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 45 899999999999999999999999999999998887640 0125889999999999999999999999
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
++...|++. .+...++++++++|+++.++..+|.++... |++++|+..|+
T Consensus 293 ~l~~~g~~~----------eA~~~l~~al~l~P~~~~a~~~La~~l~~~--------------------G~~~eA~~~l~ 342 (656)
T PRK15174 293 ALIRTGQNE----------KAIPLLQQSLATHPDLPYVRAMYARALRQV--------------------GQYTAASDEFV 342 (656)
T ss_pred HHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHH
Confidence 998888877 466888999999999999999999888764 88999999999
Q ss_pred HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
++++.+| +....+..+|.++...|++++|+..|++++++.|++..
T Consensus 343 ~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 343 QLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 9999999 66667777899999999999999999999999998764
No 15
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.76 E-value=2.4e-16 Score=131.24 Aligned_cols=191 Identities=18% Similarity=0.116 Sum_probs=140.2
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME 107 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~ 107 (259)
.+..+..++ .. |++++|+..+++++..+|+++ ++++.+|.++...|++. +|+..++++++
T Consensus 36 ~~~~g~~~~--~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~--------------~A~~~~~~~l~ 98 (235)
T TIGR03302 36 LYEEAKEAL--DS-GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA--------------EAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHH
Confidence 366666676 56 999999999999999999887 68899999999999875 99999999999
Q ss_pred hCCCChH---HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159 108 LAPNNSN---TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI 184 (259)
Q Consensus 108 ~~P~~~~---~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 184 (259)
..|+++. +++.+|.++...... .....+....+.+.++++++.+|++..++..+..+.............++..+
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDR--VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 677888887654110 00011222357889999999999998776444322111111111111111112
Q ss_pred hcCCCCCcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 185 VSDLDEPTAEDAIANCLKAEELAPA--PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 185 ~~~~~~g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
+. .|++++|+..|+++++..|+ ....+++.+|.++..+|++++|+++++......|
T Consensus 177 ~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 177 LK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11 49999999999999999773 2357899999999999999999999988876665
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=1.3e-16 Score=154.47 Aligned_cols=203 Identities=20% Similarity=0.156 Sum_probs=165.2
Q ss_pred ccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159 27 VNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106 (259)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal 106 (259)
..+..+..+..++ .. |++++|+..+.++++.+|+++++++.+|.++...|++. +|+..+++++
T Consensus 21 ~~~~~~~~a~~~~--~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------------~A~~~~~~~~ 83 (899)
T TIGR02917 21 SPESLIEAAKSYL--QK-NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA--------------AAEKELRKAL 83 (899)
T ss_pred CHHHHHHHHHHHH--Hc-CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHH
Confidence 3355788888888 67 99999999999999999999999999999999999876 9999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhhchhhHHHHH-------------------------hcHHHHHHHHHHHHccCCCChhHHH
Q psy9159 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKI-------------------------KCGVVFRDQMNKAIQMAPKDFTLYS 161 (259)
Q Consensus 107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~-------------------------~~~~~a~~~~~kAl~l~P~~~~~~~ 161 (259)
+..|++..++..++.++...|++..+.... +....+...++++++.+|+++.++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (899)
T TIGR02917 84 SLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163 (899)
T ss_pred HcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 999999999888999888888776544322 1224677899999999999999999
Q ss_pred HHHHHHHHhhccchHHHHHHHHHhcC--------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159 162 LKGRYQYEISKLSFFERKIAVLIVSD--------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE 227 (259)
Q Consensus 162 ~lG~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~ 227 (259)
.+|.++...++.....+.+...+... ...|++++|+.+|+++++++| .+...+..++.++...|+
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~ 242 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGE 242 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCC
Confidence 99999988876544333332221111 125889999999999999999 678888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcc
Q psy9159 228 YAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 228 ~~eA~~~~~kal~l~p~~~~ 247 (259)
+++|...++++++..|.++.
T Consensus 243 ~~~A~~~~~~~~~~~~~~~~ 262 (899)
T TIGR02917 243 FEEAEKHADALLKKAPNSPL 262 (899)
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 99999999988888887654
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1.8e-16 Score=158.95 Aligned_cols=193 Identities=15% Similarity=0.028 Sum_probs=135.5
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159 35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN 114 (259)
Q Consensus 35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~ 114 (259)
+..++ .. |++++|+..|+++++.+|++++++..+|.+|...|++. +|+.+++++++++|++..
T Consensus 276 G~~~~--~~-g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~--------------eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 276 GLAAV--DS-GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA--------------RAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCccc
Confidence 44455 56 99999999999999999999999999999999999875 999999999999999865
Q ss_pred HHH--------------HHHHHHHHhhchhhHHHHH------------------------hcHHHHHHHHHHHHccCCCC
Q psy9159 115 TQK--------------WYGICVGANGQFQSLKEKI------------------------KCGVVFRDQMNKAIQMAPKD 156 (259)
Q Consensus 115 ~~~--------------~la~~~~~~~~~~~~~~~~------------------------~~~~~a~~~~~kAl~l~P~~ 156 (259)
... ..|.++...|++..+...+ ++...|.+.|+++++++|++
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 321 1233444445544322111 11123444455555555555
Q ss_pred hhHHHHHHHHHHHhhccchHHHH--------------------------HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC
Q psy9159 157 FTLYSLKGRYQYEISKLSFFERK--------------------------IAVLIVSDLDEPTAEDAIANCLKAEELAPAP 210 (259)
Q Consensus 157 ~~~~~~lG~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~ 210 (259)
..++..++.++... ..+..... .+..+ ...|++++|+.+|+++++++| +
T Consensus 419 ~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~---~~~g~~~eA~~~~~~Al~~~P-~ 493 (1157)
T PRK11447 419 TNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL---ENQGKWAQAAELQRQRLALDP-G 493 (1157)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCC-C
Confidence 55555444443211 10000000 00000 125999999999999999999 7
Q ss_pred cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 211 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
++.+++.+|.+|..+|++++|+..++++++++|.+++..
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 789999999999999999999999999999999887643
No 18
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=8.7e-17 Score=129.07 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHH
Q psy9159 66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ 145 (259)
Q Consensus 66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~ 145 (259)
.+...||.-|+..|+.. .|..-+++||+.||++..+|..++.++...|+.+ .+.+.
T Consensus 36 ~arlqLal~YL~~gd~~--------------~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~----------~A~e~ 91 (250)
T COG3063 36 KARLQLALGYLQQGDYA--------------QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND----------LADES 91 (250)
T ss_pred HHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------hHHHH
Confidence 45567888899999875 9999999999999999999999999999998876 46789
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC--CcHHhHHHHHHHHH
Q psy9159 146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--PWKENQLLIAKCYI 223 (259)
Q Consensus 146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~--~~~~~~~~la~~~~ 223 (259)
|++|++++|++.+++++.|.|++.. |++++|..+|++|+.. |. ..+..+-++|.|-.
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~q--------------------g~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQ--------------------GRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhC--------------------CChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh
Confidence 9999999999999999999999874 8899999999999984 41 23567999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy9159 224 EAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY 255 (259)
Q Consensus 224 ~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~ 255 (259)
+.|+++.|.++|+++++++|.++......+.-
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 99999999999999999999998765555443
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=8.9e-17 Score=124.06 Aligned_cols=125 Identities=9% Similarity=-0.070 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159 52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS 131 (259)
Q Consensus 52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~ 131 (259)
..++++++.+|++ ++.+|.++...|++. +|+..|++++.++|+++.+|..+|.++...|++.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~- 75 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYS--------------RAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT- 75 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH-
Confidence 4566666666653 445666666666653 6666666666666666666666666666666665
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW 211 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~ 211 (259)
.|...|+++++++|+++.+++.+|.++... |++++|+.+|++|+++.| ++
T Consensus 76 ---------~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~--------------------g~~~eAi~~~~~Al~~~p-~~ 125 (144)
T PRK15359 76 ---------TAINFYGHALMLDASHPEPVYQTGVCLKMM--------------------GEPGLAREAFQTAIKMSY-AD 125 (144)
T ss_pred ---------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCC-CC
Confidence 345666666666666666666666666553 566666666666666666 55
Q ss_pred HHhHHHHHHHHHH
Q psy9159 212 KENQLLIAKCYIE 224 (259)
Q Consensus 212 ~~~~~~la~~~~~ 224 (259)
+..+..+|.+...
T Consensus 126 ~~~~~~~~~~~~~ 138 (144)
T PRK15359 126 ASWSEIRQNAQIM 138 (144)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655543
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=4.4e-17 Score=125.79 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=107.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHH
Q psy9159 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER 178 (259)
Q Consensus 99 ~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~ 178 (259)
...++++++++|++ +..+|.++...|++. ++...+++++.++|+++.+|+.+|.++...
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-------- 71 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS----------RAVIDFSWLVMAQPWSWRAHIALAGTWMML-------- 71 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--------
Confidence 46799999999986 456788888888887 567899999999999999999999999875
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
|++++|+.+|.++++++| +++.+++++|.++..+|++++|++.|++++++.|++++.-..
T Consensus 72 ------------g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 72 ------------KEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred ------------hhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 889999999999999999 789999999999999999999999999999999999865433
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=8.8e-16 Score=145.61 Aligned_cols=179 Identities=12% Similarity=0.020 Sum_probs=127.9
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.. |++.+|+.+++.++...|+++++++.+|.+....|++. +|++.++++++++|+++.++..+|.
T Consensus 54 ~~-g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~--------------~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 54 RK-DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD--------------AVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred hc-CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH--------------HHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45 78888888888888888888888888887777777654 7777777777777777777777777
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH-------------------------
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF------------------------- 176 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~------------------------- 176 (259)
++...|++. .|...++++++++|+++.++..+|.++...++.+..
T Consensus 119 ~l~~~g~~~----------~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~ 188 (656)
T PRK15174 119 VLLKSKQYA----------TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFL 188 (656)
T ss_pred HHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777776665 345566666666666666666666665555443211
Q ss_pred --------HHHHHHHHhcC---------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHH---
Q psy9159 177 --------ERKIAVLIVSD---------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAK--- 230 (259)
Q Consensus 177 --------~~~~~~~~~~~---------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~e--- 230 (259)
...+...+-.. ...|++++|+..|+++++++| ++..++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHH
Confidence 11111100000 125889999999999999999 678889999999999999986
Q ss_pred -HHHHHHHHhcCCCCCc
Q psy9159 231 -AVQWLDKAKAIPVVSY 246 (259)
Q Consensus 231 -A~~~~~kal~l~p~~~ 246 (259)
|+..|+++++++|+++
T Consensus 268 ~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 268 QAAEHWRHALQFNSDNV 284 (656)
T ss_pred HHHHHHHHHHhhCCCCH
Confidence 8999999999998765
No 22
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=4e-16 Score=135.16 Aligned_cols=162 Identities=12% Similarity=0.060 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
.+++++|+..+.++|+.+|++..+|...+.++..+|.. +++++..+.++++.+|++..+|.+.+.++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~-------------l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDAD-------------LEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchh-------------HHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 38999999999999999999999999999999988742 35999999999999999999999999998
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
..++... .......++++|++||+|..+|..+|.++... |++++|++++.++
T Consensus 117 ~~l~~~~--------~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l--------------------~~~~eeL~~~~~~ 168 (320)
T PLN02789 117 EKLGPDA--------ANKELEFTRKILSLDAKNYHAWSHRQWVLRTL--------------------GGWEDELEYCHQL 168 (320)
T ss_pred HHcCchh--------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHH
Confidence 8777531 01346788999999999999999999887664 7799999999999
Q ss_pred HhhCCCCcHHhHHHHHHHHHHh---CCH----HHHHHHHHHHhcCCCCCcc
Q psy9159 204 EELAPAPWKENQLLIAKCYIEA---GEY----AKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 204 i~l~P~~~~~~~~~la~~~~~~---g~~----~eA~~~~~kal~l~p~~~~ 247 (259)
|+++| .+..+|.+++.++..+ |++ ++++++.++++.++|.|..
T Consensus 169 I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 169 LEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred HHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC
Confidence 99999 7889999999998876 333 5789999999999998864
No 23
>KOG1155|consensus
Probab=99.72 E-value=9.2e-16 Score=133.72 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=141.3
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhc----------------cc----CcHHHHHHHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKR----------------RE----NDKEASEKYILQGIEY 101 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~----------------~~----~~~~~~~~~~~~A~~~ 101 (259)
.. .++++|++.|+++.+.+|-..+-+-....+++.+.+..+ .. ++---..+..++|+.+
T Consensus 274 ~~-rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 274 NQ-RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hh-hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 55 899999999999999999776666666666655443111 00 1111335567899999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA 181 (259)
Q Consensus 102 ~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~ 181 (259)
|++|+++||....+|...|.=+..+.+.. .|++.|++|++++|.|..+|+.||..|-.+
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~----------AAi~sYRrAvdi~p~DyRAWYGLGQaYeim----------- 411 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTH----------AAIESYRRAVDINPRDYRAWYGLGQAYEIM----------- 411 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccH----------HHHHHHHHHHhcCchhHHHHhhhhHHHHHh-----------
Confidence 99999999999999999998887776655 578999999999999999999999998776
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 182 VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
+-..=|+-+|+||+++.| +.++.|..||.||.++++.++|+++|++|+.....
T Consensus 412 ---------~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 412 ---------KMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred ---------cchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 336778899999999999 67899999999999999999999999999998755
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.71 E-value=7.5e-16 Score=125.09 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH-
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV- 123 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~- 123 (259)
++.++++..++++++.+|++++.|..+|.+|...|++. +|+..++++++++|+++.++..+|.++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~--------------~A~~a~~~Al~l~P~~~~~~~~lA~aL~ 118 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD--------------NALLAYRQALQLRGENAELYAALATVLY 118 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999875 999999999999999999999999976
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
...|+... .++...++++++++|+++.+++.+|..+++. |++++|+.+|+++
T Consensus 119 ~~~g~~~~--------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~--------------------g~~~~Ai~~~~~a 170 (198)
T PRK10370 119 YQAGQHMT--------PQTREMIDKALALDANEVTALMLLASDAFMQ--------------------ADYAQAIELWQKV 170 (198)
T ss_pred HhcCCCCc--------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Confidence 55565310 1578999999999999999999999999875 8899999999999
Q ss_pred HhhCCCC
Q psy9159 204 EELAPAP 210 (259)
Q Consensus 204 i~l~P~~ 210 (259)
++++|.+
T Consensus 171 L~l~~~~ 177 (198)
T PRK10370 171 LDLNSPR 177 (198)
T ss_pred HhhCCCC
Confidence 9999843
No 25
>KOG1173|consensus
Probab=99.71 E-value=1.1e-15 Score=135.98 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|+..+-+.+-.+....+|+.+-.|+..|.-|...|+ +++|+.++-||..+||....+|..+|..+.
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k--------------~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK--------------YSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------------cHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 444444444444455555555555555555555444 469999999999999999999999999998
Q ss_pred HhhchhhHHHH------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159 125 ANGQFQSLKEK------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI 180 (259)
Q Consensus 125 ~~~~~~~~~~~------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~ 180 (259)
..+.-+.+... ..+...|.+.+..|+.+.|++|.+.+.+|.+.+..+.++.+.+-+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 87766544321 233346778999999999999999999999888765544322222
Q ss_pred HHHH----------------h---cC--CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 181 AVLI----------------V---SD--LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 181 ~~~~----------------~---~~--~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
..++ . |. -..+++++||.+|++++.+.| .++.++..+|.+|..+|+++.|++.|.|++
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2111 0 00 125889999999999999999 779999999999999999999999999999
Q ss_pred cCCCCCccch
Q psy9159 240 AIPVVSYESH 249 (259)
Q Consensus 240 ~l~p~~~~~~ 249 (259)
.++|+|.--.
T Consensus 517 ~l~p~n~~~~ 526 (611)
T KOG1173|consen 517 ALKPDNIFIS 526 (611)
T ss_pred hcCCccHHHH
Confidence 9999985433
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=1.4e-15 Score=147.17 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++++|+..+++++...|++ +++..++.++...|+.. +|...++++++.+|+++.++..+|.++.
T Consensus 717 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~--------------~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA--------------EAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66666666666666666655 45555666666666543 5555555555555555555555555555
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch----HHHHHH-------------HHHhcC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF----FERKIA-------------VLIVSD 187 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~----~~~~~~-------------~~~~~~ 187 (259)
..|++. ++...|+++++.+|+++.++..+|.++...++ +. +.+.+. ..+
T Consensus 782 ~~g~~~----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~--- 847 (899)
T TIGR02917 782 AQKDYD----------KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL--- 847 (899)
T ss_pred HCcCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH---
Confidence 555544 23445555555555555555555554443211 00 000000 000
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
...|++++|+++|+++++++| .++.++..+|.++...|++++|++.+++++
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 002556666666666666666 455556666666666666666666666554
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=5.8e-16 Score=151.16 Aligned_cols=156 Identities=15% Similarity=0.074 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++++|+..++++++.+|+ ++++..+|.++...|++. +|+..++++++++|+++.++..+|.++.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~d--------------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVP--------------AAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8999999999999999996 889999999999988875 9999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..|++. .++..++++++++|+++.+++.+|.++... |++++|+.+|++|+
T Consensus 655 ~~G~~e----------eAi~~l~~AL~l~P~~~~a~~nLA~al~~l--------------------Gd~~eA~~~l~~Al 704 (987)
T PRK09782 655 DSGDIA----------QSREMLERAHKGLPDDPALIRQLAYVNQRL--------------------DDMAATQHYARLVI 704 (987)
T ss_pred HCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence 999887 567899999999999999999999999875 88999999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
+++| ++..+....|.+.....++..|.+.+.++..++|...
T Consensus 705 ~l~P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 705 DDID-NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred hcCC-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999 7889999999999999999999999999999998765
No 28
>KOG1126|consensus
Probab=99.70 E-value=1.9e-16 Score=143.11 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++++.|+..|+++++.||...-+|-.+|-=+.. .+.++.|...|++||..+|.+..||+.+|.++.
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--------------~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--------------TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhh--------------hHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 899999999999999999877655544433333 345679999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC--------------CC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL--------------DE 190 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 190 (259)
+.++++ .|.-++++|+++||.+.....-+|.++.+++..+...+-+..++-..+ ..
T Consensus 501 Kqek~e----------~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 501 KQEKLE----------FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred ccchhh----------HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 888777 456778888888888888888888888776543322211111111000 03
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
+++++|+..+++.-++-| +...++.-+|.+|..+|+.+.|+..|--|..++|.-
T Consensus 571 ~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred cchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 666666666666666666 556666666666666666666666666666666653
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=1.6e-15 Score=123.14 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH-HHhhcc
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ-YEISKL 173 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~-~~~~~~ 173 (259)
.++++..++++++.+|+|+++|..+|.++...+++. .|...|++|++++|+++.++..+|.++ ...
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~----------~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~--- 121 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD----------NALLAYRQALQLRGENAELYAALATVLYYQA--- 121 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence 468899999999999999999999999999999887 567899999999999999999999975 443
Q ss_pred chHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159 174 SFFERKIAVLIVSDLDEPT--AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD 250 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~--~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~ 250 (259)
|+ +++|+..++++++++| +++.+++.+|.++...|++++|+.+++++++++|.+++-..
T Consensus 122 -----------------g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 122 -----------------GQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred -----------------CCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 44 6999999999999999 78999999999999999999999999999999988775443
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=3.5e-15 Score=149.84 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=128.2
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
..+..+. .. |++++|+..|+++++.+|+++.+++.+|.+|...|++. +|+..++++++++|++
T Consensus 466 ~~a~~~~--~~-g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~--------------~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 466 QQAEALE--NQ-GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS--------------QADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCC
Confidence 3455555 56 99999999999999999999999999999999999875 9999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHH----------------------HH--------HHHHHHHHccCCCChhHHHH
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGV----------------------VF--------RDQMNKAIQMAPKDFTLYSL 162 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~----------------------~a--------~~~~~kAl~l~P~~~~~~~~ 162 (259)
+.+++.++..+...++...+...+.... .+ .+...+.++.+|+++.++..
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~ 608 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHH
Confidence 9999888887766665544332211100 00 00112234456666666666
Q ss_pred HHHHHHHhhccchHHHHHHHHHhcCC--------------CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159 163 KGRYQYEISKLSFFERKIAVLIVSDL--------------DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY 228 (259)
Q Consensus 163 lG~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~ 228 (259)
+|.++.+.++.......+..++...| ..|++++|+.+++++++..| ++...+..+|.++...|++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCH
Confidence 66666665443222211111111000 13666666666666666666 5566666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCc
Q psy9159 229 AKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 229 ~eA~~~~~kal~l~p~~~ 246 (259)
++|++.|++++...|.++
T Consensus 688 ~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHHhhhCccCC
Confidence 667666666666655444
No 31
>KOG0547|consensus
Probab=99.68 E-value=1.8e-15 Score=132.75 Aligned_cols=155 Identities=19% Similarity=0.113 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++-.|.+.+..+|+.+|.++..|+.+|.+|.+..+.. +....|.+|..+||+|++.+++.|.+..
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~--------------~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSE--------------KMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccH--------------HHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 99999999999999999999999999999999887764 8899999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
.+++++ .|...|+++++|+|++.-++..++-..++. ++++++...|+.++
T Consensus 406 lL~q~e----------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~--------------------~k~~~~m~~Fee~k 455 (606)
T KOG0547|consen 406 LLQQYE----------EAIADFQKAISLDPENAYAYIQLCCALYRQ--------------------HKIAESMKTFEEAK 455 (606)
T ss_pred HHHHHH----------HHHHHHHHHhhcChhhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Confidence 888887 567899999999999999999999888875 67999999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.--| ..++++..-|.++..+++|++|++.|++|+++.|.
T Consensus 456 kkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 456 KKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999 78999999999999999999999999999999988
No 32
>KOG2076|consensus
Probab=99.67 E-value=1.3e-14 Score=134.99 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=155.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcH---------H
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDK---------E 89 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~---------~ 89 (259)
..+.+|+.+| .. |++++|..++.++|+.+|.++.+|+.||.+|-+.|+..+. +.+. .
T Consensus 141 ~ll~eAN~lf--ar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 141 QLLGEANNLF--AR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHH--Hh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4577888888 55 9999999999999999999999999999999999986631 2332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------hHHHHH
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------TLYSLK 163 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~~~~~l 163 (259)
+..+++++|+-+|.+||..+|.+....+..+.++.+.|+.. .+.+.+.+++.++|... .++..
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~----------~Am~~f~~l~~~~p~~d~er~~d~i~~~- 286 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK----------RAMETFLQLLQLDPPVDIERIEDLIRRV- 286 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH----------HHHHHHHHHHhhCCchhHHHHHHHHHHH-
Confidence 45677889999999999999999888888888887777765 46678888889888211 11100
Q ss_pred HHHHHHhhc--------------------cc-------------hHHHHHHHH---------------------------
Q psy9159 164 GRYQYEISK--------------------LS-------------FFERKIAVL--------------------------- 183 (259)
Q Consensus 164 G~~~~~~~~--------------------~~-------------~~~~~~~~~--------------------------- 183 (259)
...+....+ .+ .+.++....
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 000000000 00 000000000
Q ss_pred Hhc------------------------------------------------------CCCCCcHHHHHHHHHHHHhhCCC
Q psy9159 184 IVS------------------------------------------------------DLDEPTAEDAIANCLKAEELAPA 209 (259)
Q Consensus 184 ~~~------------------------------------------------------~~~~g~~~eAi~~~~kAi~l~P~ 209 (259)
++. .+..|++.+|+.+|...+...+.
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 000 00159999999999999999997
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy9159 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT 254 (259)
Q Consensus 210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~ 254 (259)
++..+|..+|.||+.+|.+++|++.|.+++.+.|++.+.+-.+.+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 777889999999999999999999999999999999987765544
No 33
>PLN02789 farnesyltranstransferase
Probab=99.66 E-value=5.5e-15 Score=128.09 Aligned_cols=166 Identities=8% Similarity=0.019 Sum_probs=139.9
Q ss_pred C-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 45 D-DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 45 ~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
| +++++++.+.++++.+|++..+|+..+.++..+|... .++++++++++++++|+|..+|...++++
T Consensus 85 ~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~------------~~~el~~~~kal~~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 85 DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA------------ANKELEFTRKILSLDAKNYHAWSHRQWVL 152 (320)
T ss_pred chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh------------hHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 5 6899999999999999999999999999998887531 24789999999999999999999999999
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
..++.+. .+++.++++|++||.|..+|+.+|.+...++.+.. .....++++++..++
T Consensus 153 ~~l~~~~----------eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~-------------~~~~~e~el~y~~~a 209 (320)
T PLN02789 153 RTLGGWE----------DELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG-------------LEAMRDSELKYTIDA 209 (320)
T ss_pred HHhhhHH----------HHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc-------------ccccHHHHHHHHHHH
Confidence 9998876 46789999999999999999999988765422100 011246789999999
Q ss_pred HhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHHhcCCCCCc
Q psy9159 204 EELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 204 i~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~kal~l~p~~~ 246 (259)
|.++| ++..+|.+++.++.. +++..+|++.+.+++..+|.+.
T Consensus 210 I~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 210 ILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999 788999999999988 5667789999999998877643
No 34
>KOG0547|consensus
Probab=99.66 E-value=6.3e-15 Score=129.31 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=149.7
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
.+..+..+. .. .+-++-+..|.++...+|+||++|+..|.+++-++++. +|+.-|++|+.++|
T Consensus 363 yI~~a~~y~--d~-~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e--------------~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 363 YIKRAAAYA--DE-NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYE--------------EAIADFQKAISLDP 425 (606)
T ss_pred HHHHHHHHh--hh-hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHH--------------HHHHHHHHHhhcCh
Confidence 344554444 44 88999999999999999999999999999999988875 99999999999999
Q ss_pred CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH--------
Q psy9159 111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-------- 182 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-------- 182 (259)
+|.-++..++.++.+.+.+. .....|+.+++..|+-++++...|.++...+++....+....
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~----------~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIA----------ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 99999999999988887665 345677888888888888888888877766655433222211
Q ss_pred -------------HHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 183 -------------LIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 183 -------------~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
++.-..+++++..|+..+.+|+++|| ..-.++-.||.+....|+.++|+++|++++.+.-
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11111246999999999999999999 7788999999999999999999999999988753
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=2.5e-14 Score=116.85 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=139.2
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC--CCChHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA--PNNSNTQKWY 119 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~--P~~~~~~~~l 119 (259)
.. |++++|++.++++++.+|+++.++..+|.++...|++. +|+..+++++... |..+..+..+
T Consensus 77 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~l 141 (234)
T TIGR02521 77 QL-GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE--------------QAMQQFEQAIEDPLYPQPARSLENA 141 (234)
T ss_pred Hc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHhccccccchHHHHHH
Confidence 45 99999999999999999999999999999999999875 9999999999864 5667788889
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN 199 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~ 199 (259)
|.++...|++. .+...++++++.+|+++.++..+|.+++.. |++++|+.+
T Consensus 142 ~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~ 191 (234)
T TIGR02521 142 GLCALKAGDFD----------KAEKYLTRALQIDPQRPESLLELAELYYLR--------------------GQYKDARAY 191 (234)
T ss_pred HHHHHHcCCHH----------HHHHHHHHHHHhCcCChHHHHHHHHHHHHc--------------------CCHHHHHHH
Confidence 99998888876 567899999999999999999999998874 889999999
Q ss_pred HHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 200 CLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 200 ~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
+++++++.| +.+..+..++.++...|+.++|..+.+.+....|
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 192 LERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999988 6788888899999999999999999988877654
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=1.9e-15 Score=129.21 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQ--PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC 122 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~ 122 (259)
++++++.+.++++.... |.++.+|..+|.++...|+.. +|+..++++++++|+|+.++..++++
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~--------------~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD--------------KALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH--------------HHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 88888888888876544 678888888888888888764 99999999999999999999999988
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK 202 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k 202 (259)
+...|+... +.+.++...+..|+++..|..+|.++..+ |++++|+.+|++
T Consensus 190 li~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~la~~~~~l--------------------g~~~~Al~~~~~ 239 (280)
T PF13429_consen 190 LIDMGDYDE----------AREALKRLLKAAPDDPDLWDALAAAYLQL--------------------GRYEEALEYLEK 239 (280)
T ss_dssp HCTTCHHHH----------HHHHHHHHHHH-HTSCCHCHHHHHHHHHH--------------------T-HHHHHHHHHH
T ss_pred HHHCCChHH----------HHHHHHHHHHHCcCHHHHHHHHHHHhccc--------------------cccccccccccc
Confidence 887777652 34555565666699999999999988886 789999999999
Q ss_pred HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 203 Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
++..+| +++.+...+|.++...|+.++|.+.+++++..
T Consensus 240 ~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 240 ALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHST-T-HHHHHHHHHHHT------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccc
Confidence 999999 77999999999999999999999999998753
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=2.4e-14 Score=127.57 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=114.6
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------c-CcHH-----------
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------E-NDKE----------- 89 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~-~~~~----------- 89 (259)
+..+.... .. |++++|+..+.++++.+|++++++..+|.++...|++.+. + ....
T Consensus 39 y~~g~~~~--~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 39 YFKGLNFL--LN-EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHH--hc-CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444444 46 9999999999999999999999999999999999887521 0 0000
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-----HHHH
Q psy9159 90 --ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-----LYSL 162 (259)
Q Consensus 90 --~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-----~~~~ 162 (259)
...+.+++|+..++++++.+|.+..++..++.++...|++. ++.+.++++++.+|.+.. .+..
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ----------KAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH----------HHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 11234566666666666666666666666666666555554 345566666666665432 3445
Q ss_pred HHHHHHHhhccchHHHHHHHHHh------------c--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159 163 KGRYQYEISKLSFFERKIAVLIV------------S--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY 228 (259)
Q Consensus 163 lG~~~~~~~~~~~~~~~~~~~~~------------~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~ 228 (259)
+|..+...++.....+.+..++- + ....|++++|++.|+++++.+|.+...++..++.+|...|++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 55555554443222111111100 0 011355555555555555555522223445555555555555
Q ss_pred HHHHHHHHHHhcCCCC
Q psy9159 229 AKAVQWLDKAKAIPVV 244 (259)
Q Consensus 229 ~eA~~~~~kal~l~p~ 244 (259)
++|++.++++++..|+
T Consensus 266 ~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 266 AEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555555543
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=1.3e-14 Score=129.28 Aligned_cols=178 Identities=14% Similarity=0.024 Sum_probs=127.2
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH-----HH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN-----TQ 116 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~-----~~ 116 (259)
.. |++++|+..++++++.+|.+..++..++.++...|++ ++|++.++++++..|++.. .+
T Consensus 119 ~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~--------------~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 119 KA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW--------------QKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH--------------HHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44 7777777777777777777777777777777766665 4888888888888776543 23
Q ss_pred HHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh-----------
Q psy9159 117 KWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV----------- 185 (259)
Q Consensus 117 ~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~----------- 185 (259)
..+|.++...+++. .+...++++++++|++..+++.+|.++...++.....+.+..+..
T Consensus 184 ~~la~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 184 CELAQQALARGDLD----------AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred HHHHHHHHhCCCHH----------HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 34455555555554 456777888888888888888888887777664332222111110
Q ss_pred ----cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 186 ----SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 186 ----~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.....|++++|+..++++++.+| +. ..+..+|.++...|++++|+..++++++..|++.
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYP-GA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 01125999999999999999999 54 4458899999999999999999999999987765
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=2.2e-14 Score=135.54 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=139.4
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA 125 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~ 125 (259)
...+++.-+......+|++++++++||.+....|.++ +|+..++.+++++|++..++..++.++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~--------------ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~ 132 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSD--------------EGLAVWRGIHQRFPDSSEAFILMLRGVKR 132 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3445555556666789999999999999999999875 99999999999999999999999999999
Q ss_pred hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159 126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE 205 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~ 205 (259)
.+.++ +|...+++++..+|+++.+++.+|.++.++ |++++|+.+|++++.
T Consensus 133 ~~~~e----------eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~--------------------g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 133 QQGIE----------AGRAEIELYFSGGSSSAREILLEAKSWDEI--------------------GQSEQADACFERLSR 182 (694)
T ss_pred hccHH----------HHHHHHHHHhhcCCCCHHHHHHHHHHHHHh--------------------cchHHHHHHHHHHHh
Confidence 98887 567888999999999999999999988775 889999999999999
Q ss_pred hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 206 LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 206 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.+| +...++..+|.++...|+.++|...|++|++....
T Consensus 183 ~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 183 QHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999 77999999999999999999999999999987643
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.63 E-value=8.5e-15 Score=111.31 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=110.9
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHH
Q psy9159 100 EYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERK 179 (259)
Q Consensus 100 ~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~ 179 (259)
+.++++++++|++..+...+|.++...+++. .+...+++++.++|+++.+|..+|.++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------- 64 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD----------EALKLFQLLAAYDPYNSRYWLGLAACCQML--------- 64 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------
Confidence 4688999999999999999999999898876 567889999999999999999999999875
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 180 IAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 180 ~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
|++++|+.+++++++++| .+...++.+|.++...|++++|+++++++++++|++.+-+.+.
T Consensus 65 -----------~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 65 -----------KEYEEAIDAYALAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred -----------HHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 779999999999999999 7789999999999999999999999999999999888755443
No 41
>KOG0624|consensus
Probab=99.59 E-value=2.6e-13 Score=114.83 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=148.6
Q ss_pred ccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCc---------
Q psy9159 27 VNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------END--------- 87 (259)
Q Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~--------- 87 (259)
..+..++.+..++ .. |++..|+..|..+++.+|++..++++.|-+|..+|+.... ++|
T Consensus 37 dvekhlElGk~ll--a~-~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELL--AR-GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHH--Hh-hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 3455688888999 67 9999999999999999999999999999999999975410 111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHH------------hhchhhHHHHHh--------------
Q psy9159 88 -KEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGA------------NGQFQSLKEKIK-------------- 137 (259)
Q Consensus 88 -~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~------------~~~~~~~~~~~~-------------- 137 (259)
..-+.+.+++|..-|...|.-+|.+. ++.-.++.+... .|+...+...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 12345667888888888888888443 222222222111 122222221111
Q ss_pred ----------cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc---------------------hH----------
Q psy9159 138 ----------CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS---------------------FF---------- 176 (259)
Q Consensus 138 ----------~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~---------------------~~---------- 176 (259)
....|+..++.+-+|..++.+.++.++.+++..++.. ++
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 1113344555555566666666666666665554421 11
Q ss_pred ---HHHHH------------HHHhcC------------------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH
Q psy9159 177 ---ERKIA------------VLIVSD------------------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223 (259)
Q Consensus 177 ---~~~~~------------~~~~~~------------------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~ 223 (259)
+.++. ..+... ...|++.+||....++++++| ++..++..+|.+|+
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHh
Confidence 11110 011111 125899999999999999999 78999999999999
Q ss_pred HhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 224 EAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 224 ~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
....|+.||..|++|.+.++.|...++.+
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999999988765543
No 42
>KOG1125|consensus
Probab=99.59 E-value=3.2e-14 Score=127.07 Aligned_cols=144 Identities=10% Similarity=0.026 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
.+.+.+|.-.++.|+..+|++.++|.+||.+....++-. .++..+++|+++||+|-.++..|+..|...+
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~----------~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ----------NAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH----------HHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 344679999999999999999999999999998776543 4678999999999999999999998774432
Q ss_pred cc--------chHH-----------------------------HHHHHHHh----cCC----------------CCCcHH
Q psy9159 172 KL--------SFFE-----------------------------RKIAVLIV----SDL----------------DEPTAE 194 (259)
Q Consensus 172 ~~--------~~~~-----------------------------~~~~~~~~----~~~----------------~~g~~~ 194 (259)
.- .|+. ..+...+. ..+ -.|.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 20 0110 01110000 000 158999
Q ss_pred HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.|++||+-|++.+| ++...|..||.++....+.++|+..|++|+++.|.--
T Consensus 448 raiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 448 RAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 99999999999999 6688899999999999999999999999999998754
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.2e-14 Score=124.33 Aligned_cols=171 Identities=17% Similarity=0.106 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCc---------HHHHHHHHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------END---------KEASEKYILQGIEYAKKA 105 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~---------~~~~~~~~~~A~~~~~ka 105 (259)
+++++|+..|++++..+|.++..+.+++.. ...+++.+. ..+ .....+.++++.+.++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 777788888888887777777777777666 444444321 000 012334567888888887
Q ss_pred HHhC--CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159 106 MELA--PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 106 l~~~--P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
.... |+++..|..+|.++...|+.. +|.+.+++|++++|+++.+...++.++...
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~P~~~~~~~~l~~~li~~------------- 193 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPD----------KALRDYRKALELDPDDPDARNALAWLLIDM------------- 193 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHH-TT-HHHHHHHHHHHCTT-------------
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------------
Confidence 7655 678888888999999888876 578999999999999999999999877553
Q ss_pred HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|+++++...++...+..| .++..+..+|.++..+|++++|+.++++++..+|+|+.
T Consensus 194 -------~~~~~~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 194 -------GDYDEAREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp -------CHHHHHHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred -------CChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 788888888888777777 55677889999999999999999999999999987773
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.57 E-value=1.3e-13 Score=133.07 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|+.++|++.+.++...+|..+.++..+|.++...|++. +|+..++++++++|+++.++..++.++.
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~--------------~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQ--------------NSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999875 9999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..+++. .+...++++++.+|+++. +..+|.++... |++++|+..+++++
T Consensus 95 ~~g~~~----------eA~~~l~~~l~~~P~~~~-~~~la~~l~~~--------------------g~~~~Al~~l~~al 143 (765)
T PRK10049 95 DAGQYD----------EALVKAKQLVSGAPDKAN-LLALAYVYKRA--------------------GRHWDELRAMTQAL 143 (765)
T ss_pred HCCCHH----------HHHHHHHHHHHhCCCCHH-HHHHHHHHHHC--------------------CCHHHHHHHHHHHH
Confidence 888887 567899999999999999 99999988764 88999999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
+++| ++..++..+|.++...|+.++|++.++++.. .|.
T Consensus 144 ~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 144 PRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 9999 7899999999999999999999999998887 544
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=1.6e-13 Score=131.85 Aligned_cols=179 Identities=11% Similarity=0.018 Sum_probs=141.1
Q ss_pred hhhhhhhhhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHH
Q psy9159 18 FGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97 (259)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 97 (259)
.|.....+........++...+ .+ |++..|++.|+++++.+|+++.....++.++...|+.. +
T Consensus 24 ~~~~~~~p~~~~~~y~~aii~~--r~-Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~--------------~ 86 (822)
T PRK14574 24 ISGFVVNPAMADTQYDSLIIRA--RA-GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ--------------E 86 (822)
T ss_pred HcccccCccchhHHHHHHHHHH--hC-CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH--------------H
Confidence 3333333444456677787787 67 99999999999999999999644448888888888875 9
Q ss_pred HHHHHHHHHHhCCCChHHHHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159 98 GIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 98 A~~~~~kal~~~P~~~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~ 175 (259)
|+.++++++ +|++...+..+ |.++...|++. .|.+.|+++++++|+++.++..++..+...
T Consensus 87 A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd----------~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----- 149 (822)
T PRK14574 87 VIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD----------QALALWQSSLKKDPTNPDLISGMIMTQADA----- 149 (822)
T ss_pred HHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-----
Confidence 999999999 66665555555 66888888887 577999999999999999998777766653
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
++.++|++.+++++..+| .+.. +..++.++...++..+|++.++++++.+|++.+
T Consensus 150 ---------------~q~~eAl~~l~~l~~~dp-~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 150 ---------------GRGGVVLKQATELAERDP-TVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred ---------------CCHHHHHHHHHHhcccCc-chHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 789999999999999999 5333 455666666677777799999999999988774
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.57 E-value=6.7e-14 Score=120.70 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
..+..++|+..++++++++|+++.+|..+|.++...|++. .|...++++++++|++..+|..+|.+++..
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4566789999999999999999999999999999888887 466888999999999999999999888764
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
|++++|++.|+++++++| +++..... ..+....+++++|++.+.+++..
T Consensus 146 --------------------g~~~eA~~~~~~al~~~P-~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 146 --------------------GRYELAQDDLLAFYQDDP-NDPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred --------------------CCHHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 889999999999999999 55432111 22344567899999999777654
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=2.7e-13 Score=103.02 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=106.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159 52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS 131 (259)
Q Consensus 52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~ 131 (259)
..+++++..+|+++.+.+.+|.++...|++. +|+..+++++.++|+++.++..+|.++...+++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~- 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD--------------EALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE- 68 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH--------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH-
Confidence 4678999999999999999999999999875 9999999999999999999999999999998876
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW 211 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~ 211 (259)
.+...++++++++|+++..++.+|.++... |++++|+.+|+++++++| +.
T Consensus 69 ---------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~p-~~ 118 (135)
T TIGR02552 69 ---------EAIDAYALAAALDPDDPRPYFHAAECLLAL--------------------GEPESALKALDLAIEICG-EN 118 (135)
T ss_pred ---------HHHHHHHHHHhcCCCChHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhcc-cc
Confidence 467889999999999999999999988874 889999999999999999 55
Q ss_pred HH
Q psy9159 212 KE 213 (259)
Q Consensus 212 ~~ 213 (259)
..
T Consensus 119 ~~ 120 (135)
T TIGR02552 119 PE 120 (135)
T ss_pred ch
Confidence 44
No 48
>KOG1174|consensus
Probab=99.54 E-value=1.1e-12 Score=113.46 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=153.6
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
++++..+..++ .. ++++.|+.+.+++|..+|.+.+++...|.++..+|+.. +|.-.|+.|..+
T Consensus 301 ~~wfV~~~~l~--~~-K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~--------------~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 301 SHWFVHAQLLY--DE-KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT--------------QAVIAFRTAQML 363 (564)
T ss_pred hhhhhhhhhhh--hh-hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH--------------HHHHHHHHHHhc
Confidence 46677777777 55 89999999999999999999999999999999999986 888899999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHH-----------------Hh---------cHHHHHHHHHHHHccCCCChhHHHH
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEK-----------------IK---------CGVVFRDQMNKAIQMAPKDFTLYSL 162 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~-----------------~~---------~~~~a~~~~~kAl~l~P~~~~~~~~ 162 (259)
.|-.-+++..+-.++...+.+.++.-- .+ .-++|+..++++|.++|.-..+-..
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 999888887777777666655433210 00 0136788999999999999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 163 KGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 163 lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
++.++.. .|+++++|..+++++...| + ..-+..||.++...+.+++|.+.|.+|+.++
T Consensus 444 ~AEL~~~--------------------Eg~~~D~i~LLe~~L~~~~-D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 444 IAELCQV--------------------EGPTKDIIKLLEKHLIIFP-D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh--------------------hCccchHHHHHHHHHhhcc-c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9887765 3889999999999999999 5 4568889999999999999999999999999
Q ss_pred CCCccchhh
Q psy9159 243 VVSYESHDL 251 (259)
Q Consensus 243 p~~~~~~~~ 251 (259)
|.+...+..
T Consensus 502 P~~~~sl~G 510 (564)
T KOG1174|consen 502 PKSKRTLRG 510 (564)
T ss_pred ccchHHHHH
Confidence 988655443
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.54 E-value=4.4e-13 Score=129.50 Aligned_cols=181 Identities=14% Similarity=0.008 Sum_probs=142.1
Q ss_pred HHhhcCCcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHhhchhcc-----------cCc----HH---------HH
Q psy9159 37 RLLYYGKKDDKAKAYNLTMELNNKQPNDP-DVLYRLAKACHCLYDIKRR-----------END----KE---------AS 91 (259)
Q Consensus 37 ~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~~-----------~~~----~~---------~~ 91 (259)
.++ .. |++++|+..|+++++..|..| .+...+|.+|...|+..+. +.+ .. ..
T Consensus 246 ~Ll--~~-g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 246 ALL--AR-DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHH--Hh-hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 445 45 788888888888887753322 2333357788777775531 111 00 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC
Q psy9159 92 EKYILQGIEYAKKAMELAPNN---------------SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~---------------~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~ 156 (259)
.+.+++|+..++++...+|.. ..++..++.++...|++. .|.+.+++++...|++
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~----------eA~~~l~~al~~~P~n 392 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP----------QAEMRARELAYNAPGN 392 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCC
Confidence 356789999999999998742 345667788888787776 5678899999999999
Q ss_pred hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLD 236 (259)
Q Consensus 157 ~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 236 (259)
+.++..+|.++... |++++|++.++++++++| ++...++.+|.++..+|++++|...++
T Consensus 393 ~~l~~~lA~l~~~~--------------------g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 393 QGLRIDYASVLQAR--------------------GWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999988764 889999999999999999 788999999999999999999999999
Q ss_pred HHhcCCCCCccchhh
Q psy9159 237 KAKAIPVVSYESHDL 251 (259)
Q Consensus 237 kal~l~p~~~~~~~~ 251 (259)
++++..|+++.....
T Consensus 452 ~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 452 DVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999999999865443
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=6.4e-13 Score=110.54 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=128.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHH
Q psy9159 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKI 136 (259)
Q Consensus 60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~ 136 (259)
.++..++.++.+|..+...|++. +|+..+++++..+|+++ .+++.+|.++...+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~--------------~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~------ 87 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYT--------------EAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYA------ 87 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHH------
Confidence 45677889999999999999875 99999999999999987 57788999999888887
Q ss_pred hcHHHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH
Q psy9159 137 KCGVVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE 213 (259)
Q Consensus 137 ~~~~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~ 213 (259)
.|...++++++.+|+++. +++.+|.+++..... .....|++++|++.|+++++.+| ++..
T Consensus 88 ----~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~p-~~~~ 150 (235)
T TIGR03302 88 ----EAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR------------VDRDQTAAREAFEAFQELIRRYP-NSEY 150 (235)
T ss_pred ----HHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc------------ccCCHHHHHHHHHHHHHHHHHCC-CChh
Confidence 567899999999999987 689999988764110 00113679999999999999999 5543
Q ss_pred hH-----------------HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159 214 NQ-----------------LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253 (259)
Q Consensus 214 ~~-----------------~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~ 253 (259)
++ ..+|.+|...|++++|+..++++++..|.++.....+.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~ 207 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA 207 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence 32 46789999999999999999999999998876555444
No 51
>KOG0553|consensus
Probab=99.53 E-value=5.8e-14 Score=116.98 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=104.5
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
+.+-.+++.+. .. ++|++|++.|.++|+.+|.|+-.|.+.|.+|.++|.+. .|+.-|+.||.+
T Consensus 82 E~LK~eGN~~m--~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~--------------~AVkDce~Al~i 144 (304)
T KOG0553|consen 82 ESLKNEGNKLM--KN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE--------------DAVKDCESALSI 144 (304)
T ss_pred HHHHHHHHHHH--Hh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH--------------HHHHHHHHHHhc
Confidence 45566777887 66 99999999999999999999999999999999999875 999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
||..+.+|-.+|.++..+|++. .|.+.|+|||+++|+|..++..|...-..+
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~----------~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYE----------EAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHH----------HHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999987 467889999999999999999998766554
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.52 E-value=1.2e-12 Score=107.34 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH---------HHHHHHHHHHHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE---------ASEKYILQGIEYAKKA 105 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~---------~~~~~~~~A~~~~~ka 105 (259)
+-..+...+-.....+|++.++ .+++..+...|+-... +.+.+ -+.+++.+|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4444666666666777877777 7777777777654310 01100 1233455777777777
Q ss_pred HHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159 106 MELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV 185 (259)
Q Consensus 106 l~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 185 (259)
..++|+|+++|..+|.++-+.|++. .+...|.+|+++.|+++.+..++|.++.-.
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~----------~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~--------------- 181 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFD----------EARRAYRQALELAPNEPSIANNLGMSLLLR--------------- 181 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChh----------HHHHHHHHHHHhccCCchhhhhHHHHHHHc---------------
Confidence 7777777777777777777777666 345666777777777777777777665432
Q ss_pred cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
|++++|...+.++....| .++.+.-+|+.+....|++.+|...-.+
T Consensus 182 -----gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 -----GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -----CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 667777777777766655 4566667777777777777776655443
No 53
>KOG2002|consensus
Probab=99.52 E-value=4.4e-13 Score=125.76 Aligned_cols=199 Identities=12% Similarity=0.030 Sum_probs=145.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND-PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
.++-+|-..| +. |+|..|+.+|.+++..+|.. +++...+|.+...+|+. +.|+..+++++++
T Consensus 166 ~LlGkA~i~y--nk-kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~--------------~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 166 ALLGKARIAY--NK-KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS--------------EKALLAFERALQL 228 (1018)
T ss_pred HHHHHHHHHh--cc-ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch--------------hhHHHHHHHHHhc
Confidence 4455555555 44 67777777777766666643 33334445555555554 4999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH----HHHHHHH-
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF----ERKIAVL- 183 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~----~~~~~~~- 183 (259)
||+++.+...||.+.....+..+ ...+...+.+|...+|.||.++..|+.-++..++++-. ..++...
T Consensus 229 dp~~v~alv~L~~~~l~~~d~~s-------~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 229 DPTCVSALVALGEVDLNFNDSDS-------YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred ChhhHHHHHHHHHHHHHccchHH-------HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 99999998888877655544432 22567888999999999999999999887777765311 1111110
Q ss_pred --------Hh--cC--CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 184 --------IV--SD--LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 184 --------~~--~~--~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
+| |. -.+|+|++|..+|.++++.+|++..-.++-||..|+..|++++|+.+|++++...|++.++-.+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 11 00 1269999999999999999995547789999999999999999999999999999999987655
Q ss_pred h
Q psy9159 252 S 252 (259)
Q Consensus 252 ~ 252 (259)
+
T Consensus 382 L 382 (1018)
T KOG2002|consen 382 L 382 (1018)
T ss_pred H
Confidence 4
No 54
>KOG0553|consensus
Probab=99.52 E-value=1.2e-13 Score=115.20 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159 140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA 219 (259)
Q Consensus 140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la 219 (259)
..|...|.+||+++|+|+.+|-+++.+|.++ |.++.|++..+.||.+|| ++..+|..||
T Consensus 98 ~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------------------g~~~~AVkDce~Al~iDp-~yskay~RLG 156 (304)
T KOG0553|consen 98 QEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------------------GEYEDAVKDCESALSIDP-HYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------------------cchHHHHHHHHHHHhcCh-HHHHHHHHHH
Confidence 3678899999999999999999999999886 779999999999999999 8899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 220 KCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
.+|..+|++++|++.|+||++++|+|..-|..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 99999999999999999999999999865543
No 55
>KOG0550|consensus
Probab=99.52 E-value=5.1e-14 Score=121.46 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=66.0
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.++...+ .. .+|.+|+..+..+|+..|+++..|.+.+.+++..|++. +|+.-+++.+.++|..
T Consensus 54 ~~gn~~y--k~-k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~--------------~a~~dar~~~r~kd~~ 116 (486)
T KOG0550|consen 54 EEGNAFY--KQ-KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFE--------------EALGDARQSVRLKDGF 116 (486)
T ss_pred hhcchHH--HH-hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHh--------------hcccchhhheecCCCc
Confidence 3444444 34 78999999999999999999999999999999999876 7777777777777777
Q ss_pred hHHHHHHHHHHHHhhchhhHH
Q psy9159 113 SNTQKWYGICVGANGQFQSLK 133 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~ 133 (259)
+.++...+.+...+++..++.
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred cccccchhhhhhhhHHHHHHH
Confidence 777777777776666554443
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=4.7e-13 Score=102.82 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=102.6
Q ss_pred HHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159 105 AMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 105 al~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
...+. |+.-+..+.+|..+...|++. .|...|+-+..+||.++..|+.||.++-.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~----------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~------------- 82 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFA----------GAARLFQLLTIYDAWSFDYWFRLGECCQAQ------------- 82 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHH-------------
Confidence 44667 777788889999999999887 467888999999999999999999988765
Q ss_pred HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
|+|++||.+|.+|+.++| +++..++++|.|+...|+.++|.+.|+.|+..-..++++..+
T Consensus 83 -------g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l 142 (157)
T PRK15363 83 -------KHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQIL 142 (157)
T ss_pred -------hhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 789999999999999999 789999999999999999999999999999988666665544
No 57
>KOG1129|consensus
Probab=99.49 E-value=1.3e-12 Score=110.03 Aligned_cols=180 Identities=15% Similarity=0.055 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+...|+..+.+.+...|.++..+..+|+++..++ .+++|+++|+.+++++|.|.++..-.|.-+.
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~--------------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME--------------QQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH--------------hHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 34444444444444444444444444444444444 4569999999999999999998655555554
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc----hHHHHHHHHH---------hcC----
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS----FFERKIAVLI---------VSD---- 187 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~----~~~~~~~~~~---------~~~---- 187 (259)
.-++.+ .+..+|++.|++--.+++.+.++|.+|+-.+.++ .+.|++..+. ++.
T Consensus 336 Y~~~PE----------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 336 YDNNPE----------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred cCCChH----------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 444444 5789999999999999999999999988776554 4555554221 110
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
-..|++.-|-.||+-|+..|| ++.+++.+||..-+..|+.++|..++..|....|+-.|..
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred EeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 126999999999999999999 7899999999999999999999999999999998877543
No 58
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.48 E-value=2.6e-12 Score=113.17 Aligned_cols=169 Identities=17% Similarity=0.057 Sum_probs=133.5
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
..++..++ .. |++++|++.+++++..+|+++.++.. +..+...|.... ....+...+......+|+
T Consensus 47 ~~~a~~~~--~~-g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~ 112 (355)
T cd05804 47 HVEALSAW--IA-GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG----------MRDHVARVLPLWAPENPD 112 (355)
T ss_pred HHHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc----------CchhHHHHHhccCcCCCC
Confidence 33444555 46 99999999999999999999988776 667777765431 112333334444466777
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP 191 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g 191 (259)
...++..+|.++...|++. .+...++++++++|+++.+++.+|.++++. |
T Consensus 113 ~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~p~~~~~~~~la~i~~~~--------------------g 162 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYD----------RAEEAARRALELNPDDAWAVHAVAHVLEMQ--------------------G 162 (355)
T ss_pred cHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------------C
Confidence 7777777888888888876 567899999999999999999999999875 8
Q ss_pred cHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 192 TAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
++++|+.++++++...|.+. ...+..+|.++...|++++|+..+++++...|.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 89999999999999986221 234678999999999999999999999877763
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.1e-11 Score=111.27 Aligned_cols=183 Identities=14% Similarity=0.045 Sum_probs=139.4
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHHHHH--------HHH
Q psy9159 35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKEASE--------KYI 95 (259)
Q Consensus 35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~~~~--------~~~ 95 (259)
+.... .. |++++|+..+++..+.+|+++.++..++.+|...|++.+. ..++++.. ...
T Consensus 160 a~l~l--~~-g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 160 VRIQL--AR-NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHH--HC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44444 56 9999999999999999999999999999999999987631 01111111 001
Q ss_pred -----HHHHHHHHHHH----HhCCCChHHHHHHHHHHHHhhchhhHHHHHh---------------------cHHHHHHH
Q psy9159 96 -----LQGIEYAKKAM----ELAPNNSNTQKWYGICVGANGQFQSLKEKIK---------------------CGVVFRDQ 145 (259)
Q Consensus 96 -----~~A~~~~~kal----~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~---------------------~~~~a~~~ 145 (259)
..+.+.+.+.+ ...|+++.++..++..+...|+...+...+. +..++.+.
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHH
Confidence 11122333333 3446688899999999988888776543322 12345677
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159 146 MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA 225 (259)
Q Consensus 146 ~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~ 225 (259)
+++.++.+|+|+..+..+|+++... +++++|.++|++++++.| + ...+..++.++..+
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~--------------------~~~~~A~~~le~al~~~P-~-~~~~~~La~~~~~~ 374 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKH--------------------GEWQEASLAFRAALKQRP-D-AYDYAWLADALDRL 374 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCC-C-HHHHHHHHHHHHHc
Confidence 8888999999999999999998874 889999999999999999 5 46678999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9159 226 GEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 226 g~~~eA~~~~~kal~l~ 242 (259)
|+.++|.++|++++.+-
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998864
No 60
>KOG2003|consensus
Probab=99.47 E-value=2e-12 Score=113.10 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=147.8
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
..+++..| .+ |++++|.+.|++++.-+....++++++|..+-.+|+.+ +|++.|-+.-.+--+
T Consensus 494 ~nkgn~~f--~n-gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld--------------eald~f~klh~il~n 556 (840)
T KOG2003|consen 494 TNKGNIAF--AN-GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD--------------EALDCFLKLHAILLN 556 (840)
T ss_pred hcCCceee--ec-CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH--------------HHHHHHHHHHHHHHh
Confidence 34455556 56 99999999999999999999999999999999998865 899999888888888
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc-----------------
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS----------------- 174 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~----------------- 174 (259)
+++++..++.++..+.+.. .+++.+-.+..+-|++|.++..||.+|-+.|+.+
T Consensus 557 n~evl~qianiye~led~a----------qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni 626 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPA----------QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI 626 (840)
T ss_pred hHHHHHHHHHHHHHhhCHH----------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence 8888888888887666554 4678888888999999999999998876655421
Q ss_pred ----hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 175 ----FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 175 ----~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|+..... .+.=.++||.+|++|--+.| ....+.+.++.|+...|+|++|.+.|+.....-|.+.+
T Consensus 627 e~iewl~ayyi-------dtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 627 ETIEWLAAYYI-------DTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 2211111 12336999999999999999 66888999999999999999999999999998887764
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=5.3e-12 Score=103.48 Aligned_cols=121 Identities=20% Similarity=0.167 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~ 174 (259)
-+.++.+..+++.-.|.+...+.-+|..+...|++. .+...+.++..++|+|+.+|..+|.+|-+.
T Consensus 82 a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~----------~A~~~~rkA~~l~p~d~~~~~~lgaaldq~---- 147 (257)
T COG5010 82 ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG----------EAVSVLRKAARLAPTDWEAWNLLGAALDQL---- 147 (257)
T ss_pred ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchH----------HHHHHHHHHhccCCCChhhhhHHHHHHHHc----
Confidence 456777788888888999888878899999999887 467899999999999999999999999875
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
|++++|...|.+|+++.| ..+.+..|||..|...|+++.|..++.++....+.+.
T Consensus 148 ----------------Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 148 ----------------GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred ----------------cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 889999999999999999 6788999999999999999999999999998886443
No 62
>KOG0550|consensus
Probab=99.47 E-value=5.9e-13 Score=114.98 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=136.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
.|++.+|.+..-.+++.++.+.++++..|.+++..++.. .|...++++|.++|++...-...-.+-
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~--------------ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD--------------KAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccchH--------------HHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 499999999999999999999999999999999888765 999999999999999877643322211
Q ss_pred HHhhchhhHHH--HHhcHHHHHHHHHHHHccCCCChhH----HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159 124 GANGQFQSLKE--KIKCGVVFRDQMNKAIQMAPKDFTL----YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI 197 (259)
Q Consensus 124 ~~~~~~~~~~~--~~~~~~~a~~~~~kAl~l~P~~~~~----~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi 197 (259)
.....-....+ +-+...++.+.|.+||.+||+|... |.+++.+..+ .|+.++||
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r--------------------Lgrl~eai 307 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR--------------------LGRLREAI 307 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc--------------------cCCchhhh
Confidence 11111111111 1233457789999999999997643 4444444443 38899999
Q ss_pred HHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 198 ANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 198 ~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
.-...|+++|| ..+.+++..|.|+..++++++|++.|++|.++..+ ++.++.+
T Consensus 308 sdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 308 SDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred hhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 99999999999 88999999999999999999999999999999877 7766654
No 63
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.46 E-value=8e-12 Score=114.94 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=121.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159 59 NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC 138 (259)
Q Consensus 59 ~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~ 138 (259)
..-|.++++|-..-+....+.+. ..+.+..|++.+++|++++|+++.+|..++.++.....+....+ ..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~---------~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~--~~ 399 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSG---------DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE--KQ 399 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH--HH
Confidence 45578877764443333322221 12346699999999999999999999998887765544332100 11
Q ss_pred HHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159 139 GVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216 (259)
Q Consensus 139 ~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~ 216 (259)
...+.+..++++.+ +|.++.+|..+|..+.. .|++++|..++++|++++| + ..+|.
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~--------------------~g~~~~A~~~l~rAl~L~p-s-~~a~~ 457 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALV--------------------KGKTDEAYQAINKAIDLEM-S-WLNYV 457 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHcCC-C-HHHHH
Confidence 12345666777764 88888899999887654 3889999999999999999 5 67999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253 (259)
Q Consensus 217 ~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~ 253 (259)
.+|.++...|+.++|++.|++|+.++|.++.--.+.|
T Consensus 458 ~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~ 494 (517)
T PRK10153 458 LLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIEN 494 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHh
Confidence 9999999999999999999999999999886544444
No 64
>PRK11906 transcriptional regulator; Provisional
Probab=99.45 E-value=3.3e-12 Score=113.02 Aligned_cols=131 Identities=8% Similarity=-0.034 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 94 YILQGIEYAKKAM---ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 94 ~~~~A~~~~~kal---~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
..+.|+..+.+|+ +++|+.+.++.++++++....- .+..+.......+.+..++|+++||+|+.++..+|.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-HGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4569999999999 9999999999999999875421 11111222333577899999999999999999999966543
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
++++.|+..|++|+.++| +.+.+|+..|.+....|+.++|++..+++++++|.-.
T Consensus 352 --------------------~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 352 --------------------GQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred --------------------cchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 679999999999999999 7899999999999999999999999999999999744
No 65
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.3e-12 Score=105.35 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+.++.+..++.-+..+|+|++-|..||.+|...|+.. .|...|.+|+.+.|+|++.+..+|.++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~--------------~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS--------------DALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh--------------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999875 9999999999999999999999999887
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
...+..- ..++...+++++.+||+|..+.+.||.-+++. |+|.+|+..++..+
T Consensus 202 ~~a~~~~-------ta~a~~ll~~al~~D~~~iral~lLA~~afe~--------------------g~~~~A~~~Wq~lL 254 (287)
T COG4235 202 YQAGQQM-------TAKARALLRQALALDPANIRALSLLAFAAFEQ--------------------GDYAEAAAAWQMLL 254 (287)
T ss_pred HhcCCcc-------cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHH
Confidence 6654321 11567899999999999999999999988884 88999999999999
Q ss_pred hhCCCCc
Q psy9159 205 ELAPAPW 211 (259)
Q Consensus 205 ~l~P~~~ 211 (259)
++.|.+.
T Consensus 255 ~~lp~~~ 261 (287)
T COG4235 255 DLLPADD 261 (287)
T ss_pred hcCCCCC
Confidence 9998443
No 66
>PRK11906 transcriptional regulator; Provisional
Probab=99.44 E-value=8.3e-12 Score=110.49 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=130.7
Q ss_pred CcCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159 43 KKDDKAKAYNLTMELN---NKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119 (259)
Q Consensus 43 ~~~~~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l 119 (259)
+....+.|+.+|.+++ ..+|+.+.++..+|.++....-... . +......+|.+..++|++++|+|+.++..+
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~----~-~~~~~~~~a~~~A~rAveld~~Da~a~~~~ 344 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGK----S-ELELAAQKALELLDYVSDITTVDGKILAIM 344 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3356789999999999 9999999999999999987632211 0 134456799999999999999999999999
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN 199 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~ 199 (259)
|.+++..+++. .+...+++|+.++|+.+.+|+..|.+++-. |+.++|+++
T Consensus 345 g~~~~~~~~~~----------~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~--------------------G~~~~a~~~ 394 (458)
T PRK11906 345 GLITGLSGQAK----------VSHILFEQAKIHSTDIASLYYYRALVHFHN--------------------EKIEEARIC 394 (458)
T ss_pred HHHHHhhcchh----------hHHHHHHHHhhcCCccHHHHHHHHHHHHHc--------------------CCHHHHHHH
Confidence 99999988866 467899999999999999999999877654 889999999
Q ss_pred HHHHHhhCCCCcHH-hHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 200 CLKAEELAPAPWKE-NQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 200 ~~kAi~l~P~~~~~-~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
+++|++++| .-.. ....+-.-..-....++|+..|-|-.+..
T Consensus 395 i~~alrLsP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 395 IDKSLQLEP-RRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHHHhccCc-hhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 999999999 4332 23333331234456889999887765543
No 67
>KOG3060|consensus
Probab=99.43 E-value=2.2e-11 Score=99.35 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|+..-|...+.+.....|+++-+...-|..+-..|++. +|+++|+..|+-||+|..++...-.++-
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~--------------~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK--------------EAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh--------------hHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 88888888888888888998888777777777777664 9999999999999999888876544444
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..|.-. .+++.+.+-++.+|+|+++|..++.+|+.. |.|++|.-|+++.+
T Consensus 132 a~GK~l----------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~--------------------~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 132 AQGKNL----------EAIKELNEYLDKFMNDQEAWHELAEIYLSE--------------------GDFEKAAFCLEELL 181 (289)
T ss_pred HcCCcH----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhH--------------------hHHHHHHHHHHHHH
Confidence 455433 356667777888999999999999999886 66899999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHhC---CHHHHHHHHHHHhcCCCCC
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAG---EYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g---~~~eA~~~~~kal~l~p~~ 245 (259)
=+.| +++..+..+|.++..+| +++-|.++|.++++++|.+
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999 88888888898888876 5677899999999998744
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.42 E-value=3.1e-12 Score=113.03 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=104.5
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
+..++..++ .. |+|++|++.|++++..+|+++.+++.+|.+|..+|++. +|+..+++++.++|
T Consensus 5 l~~~a~~a~--~~-~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~--------------eAl~~~~~Al~l~P 67 (356)
T PLN03088 5 LEDKAKEAF--VD-DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT--------------EAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHH--Hc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCc
Confidence 567788898 67 99999999999999999999999999999999999875 99999999999999
Q ss_pred CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
+++.+++++|.++..+|++. .|+..++++++++|+++.+...++.+...+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~----------eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQ----------TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987 567899999999999999999999876544
No 69
>KOG2002|consensus
Probab=99.41 E-value=1.2e-11 Score=116.30 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------------------------------cCcHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------------------------------ENDKEA 90 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------------------------------~~~~~~ 90 (259)
++..+|...++.++..+..+|+++-.+|..+.....+... .-+...
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 8899999999999999999999999999777654432210 011234
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
....+++|+..|.++|..+|.|..+-..+|.++...|++.. |...|.+..+---+++.+|.++|.||+.+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~----------A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE----------ARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH----------HHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 56678999999999999999999999999999999999984 45666665555557899999999999986
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
|+|..||+.|+.+++.. |++.+.+...||.++...|++.+|.+++.+|+.+.|.++
T Consensus 694 --------------------~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~--- 750 (1018)
T KOG2002|consen 694 --------------------GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT--- 750 (1018)
T ss_pred --------------------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc---
Confidence 78999999999999863 556788999999999999999999999999999998887
Q ss_pred hhhhhhc
Q psy9159 250 DLSTTYS 256 (259)
Q Consensus 250 ~~~~~~~ 256 (259)
.+.+|++
T Consensus 751 ~v~FN~a 757 (1018)
T KOG2002|consen 751 SVKFNLA 757 (1018)
T ss_pred hHHhHHH
Confidence 4666654
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=8.9e-11 Score=105.76 Aligned_cols=181 Identities=15% Similarity=0.040 Sum_probs=137.1
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCcHH--------HHHHHH
Q psy9159 35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------ENDKE--------ASEKYI 95 (259)
Q Consensus 35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~~~--------~~~~~~ 95 (259)
+...+ .. |++++|...+++..+..|+++.++..++.++...|++... ..+.. ...+.+
T Consensus 160 a~l~l--~~-~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 160 TRILL--AQ-NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHH--HC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44444 56 9999999999999999999999999999999999987631 01111 111223
Q ss_pred -----HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhchhhHHHHHhc--------------------------HH
Q psy9159 96 -----LQGIEYAKKAMELAP----NNSNTQKWYGICVGANGQFQSLKEKIKC--------------------------GV 140 (259)
Q Consensus 96 -----~~A~~~~~kal~~~P----~~~~~~~~la~~~~~~~~~~~~~~~~~~--------------------------~~ 140 (259)
+++.+.+.++++..| +++..+..++..+...|++..+.+.+.. ..
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 233447788888888 5888888888888888877654432211 12
Q ss_pred HHHHHHHHHHccCCCCh--hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH--HHHhhCCCCcHHhHH
Q psy9159 141 VFRDQMNKAIQMAPKDF--TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL--KAEELAPAPWKENQL 216 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~--~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~--kAi~l~P~~~~~~~~ 216 (259)
.+.+.++++++.+|+++ .....+|++++.. |++++|.++|+ ++++..| + ...+.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--------------------~~~~~A~~~le~a~a~~~~p-~-~~~~~ 374 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--------------------GEFIEAADAFKNVAACKEQL-D-ANDLA 374 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHhHHhhcCC-C-HHHHH
Confidence 34567788888888888 7888888888774 88999999999 5777888 5 44567
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 217 LIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 217 ~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.+|.++..+|+.++|.+++++++.
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=8.6e-11 Score=105.47 Aligned_cols=211 Identities=15% Similarity=0.093 Sum_probs=148.4
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHhhchhcc-----------cCcH----------H
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRL-AKACHCLYDIKRR-----------ENDK----------E 89 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-a~~~~~~g~~~~~-----------~~~~----------~ 89 (259)
+.++-..+ .. |++++|...+.+.-+. +++|.+++.+ +.+....|++... +... .
T Consensus 88 ~~~gl~a~--~e-Gd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 88 TEQALLKL--AE-GDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHH--hC-CCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45555555 45 8888888776665443 3345666555 4444666665421 0110 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH---------------H------------
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV---------------F------------ 142 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~---------------a------------ 142 (259)
...+.+++|+..+++.++.+|+++.++..++.++...|++..+..-+....+ +
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1234578999999999999999999999999999999988776522111110 0
Q ss_pred -HHHHHHHH----ccCCCChhHHHHHHHHHHHhhccchHHHHHHH-----------HHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 143 -RDQMNKAI----QMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-----------LIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 143 -~~~~~kAl----~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
.+.+.+.. +..|+++.++..+++.+...++.+...+.+.. .+++....++.+++++..++.++.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 01122222 24567899999999999888876554444432 233334469999999999999999
Q ss_pred CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 207 ~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
.| +++..++.+|.++...|++++|.+.|+++++..|++..
T Consensus 324 ~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 324 HG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 99 78899999999999999999999999999999988654
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=1.5e-11 Score=116.50 Aligned_cols=127 Identities=6% Similarity=-0.061 Sum_probs=117.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
.|.+++|...++.+++..|++..++..++.++.+.++++ +|+..+++++..+|+++.++..+|.++
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e--------------eA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE--------------AGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH--------------HHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 499999999999999999999999999999999998865 999999999999999999999999999
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
..+|+++ +|...|++++..+|+++.++..+|..+... |+.++|...|++|
T Consensus 165 ~~~g~~~----------~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~--------------------G~~~~A~~~~~~a 214 (694)
T PRK15179 165 DEIGQSE----------QADACFERLSRQHPEFENGYVGWAQSLTRR--------------------GALWRARDVLQAG 214 (694)
T ss_pred HHhcchH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Confidence 9999988 578999999999999999999999988774 8899999999999
Q ss_pred HhhCCCCcHHhH
Q psy9159 204 EELAPAPWKENQ 215 (259)
Q Consensus 204 i~l~P~~~~~~~ 215 (259)
++... +-...+
T Consensus 215 ~~~~~-~~~~~~ 225 (694)
T PRK15179 215 LDAIG-DGARKL 225 (694)
T ss_pred HHhhC-cchHHH
Confidence 99986 344443
No 73
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.38 E-value=1.3e-11 Score=109.06 Aligned_cols=115 Identities=25% Similarity=0.218 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHH
Q psy9159 68 LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMN 147 (259)
Q Consensus 68 ~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~ 147 (259)
+...|..++..|++ ++|++.|+++|+++|+++.++..+|.++..+|++. .|...++
T Consensus 5 l~~~a~~a~~~~~~--------------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~----------eAl~~~~ 60 (356)
T PLN03088 5 LEDKAKEAFVDDDF--------------ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT----------EAVADAN 60 (356)
T ss_pred HHHHHHHHHHcCCH--------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHH
Confidence 34456666666665 49999999999999999999999999999999887 5678999
Q ss_pred HHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159 148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE 227 (259)
Q Consensus 148 kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~ 227 (259)
+|++++|+++.+|+.+|.+++.+ |++++|+.+|+++++++| ++..+...++.|...+..
T Consensus 61 ~Al~l~P~~~~a~~~lg~~~~~l--------------------g~~~eA~~~~~~al~l~P-~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 61 KAIELDPSLAKAYLRKGTACMKL--------------------EEYQTAKAALEKGASLAP-GDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875 889999999999999999 778988889988777743
No 74
>KOG0548|consensus
Probab=99.38 E-value=3.3e-11 Score=107.22 Aligned_cols=180 Identities=17% Similarity=0.079 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc--c-------------------------CcHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR--E-------------------------NDKEASEKYILQ 97 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~--~-------------------------~~~~~~~~~~~~ 97 (259)
.++..|++.|..++..+ .+..-+.+.+-+|+.+|.+..- . +..-.+.+.++.
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 78999999999999999 8888899999999988865520 0 001134566888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchh--------hHH---------HHHhcHHHHHHHHHHHHccCCCChhHH
Q psy9159 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ--------SLK---------EKIKCGVVFRDQMNKAIQMAPKDFTLY 160 (259)
Q Consensus 98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~--------~~~---------~~~~~~~~a~~~~~kAl~l~P~~~~~~ 160 (259)
|+.+++++++-.-+ ++....+-.+-...+..+ .+. -+.++...|..+|.+||..+|+++..|
T Consensus 317 ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 99999998876654 332222221111111110 000 012234467899999999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 161 ~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.+++.+|..+ |.+..|++..+++++++| +++..|+.-|.++..+++|++|.+.|.++++
T Consensus 396 sNRAac~~kL--------------------~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 396 SNRAACYLKL--------------------GEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHH--------------------hhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999886 779999999999999999 8899999999999999999999999999999
Q ss_pred CCCCCcc
Q psy9159 241 IPVVSYE 247 (259)
Q Consensus 241 l~p~~~~ 247 (259)
++|.+.+
T Consensus 455 ~dp~~~e 461 (539)
T KOG0548|consen 455 LDPSNAE 461 (539)
T ss_pred cCchhHH
Confidence 9988765
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.2e-10 Score=96.58 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=141.3
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------c---C-cH-------
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------E---N-DK------- 88 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~---~-~~------- 88 (259)
+.+...+.++ + .+.++|++.|-++++.+|...++.+.||..+.+.|..++. + . .+
T Consensus 38 ~Yv~GlNfLL---s-~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLL---S-NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHh---h-cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3455566666 5 7999999999999999999999999999999999976531 0 0 00
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159 89 -------------------------------------EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS 131 (259)
Q Consensus 89 -------------------------------------~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~ 131 (259)
-+....+++|++..++.+++.|+.-.. .++..+..+.+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~~~ 191 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHHh
Confidence 022344566666666666666654432 34444444433222
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW 211 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~ 211 (259)
.. .+...+...++||++-||+...+-..+|++.... |+|+.|++.++.+++.||...
T Consensus 192 ~~---~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~--------------------g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 192 AS---SDVDRARELLKKALQADKKCVRASIILGRVELAK--------------------GDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred hh---hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc--------------------cchHHHHHHHHHHHHhChHHH
Confidence 11 1223567889999999999999999999988764 889999999999999999666
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
+.+.-.|..||..+|+.++.+.++.++.+..+..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 7888899999999999999999999999987764
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=4.1e-11 Score=92.15 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=99.1
Q ss_pred HHhhcC-CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159 56 ELNNKQ-PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE 134 (259)
Q Consensus 56 ~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~ 134 (259)
.+...+ ++.-+.++.+|..++..|++. +|...|+-...+||.++..|+.||.++...|++.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~--------------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~---- 86 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFA--------------GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG---- 86 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH----
Confidence 344567 788899999999999999875 9999999999999999999999999999999988
Q ss_pred HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
+|+..|.+|+.++|+++.+++.+|.+++.+ |+.+.|+++|+.|+..-
T Consensus 87 ------~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l--------------------G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 87 ------EAIYAYGRAAQIKIDAPQAPWAAAECYLAC--------------------DNVCYAIKALKAVVRIC 133 (157)
T ss_pred ------HHHHHHHHHHhcCCCCchHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999886 78999999999999986
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=3.1e-12 Score=85.77 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC-CHHHHHH
Q psy9159 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG-EYAKAVQ 233 (259)
Q Consensus 155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g-~~~eA~~ 233 (259)
.++.+|..+|.+++.. |++++|+.+|+++++++| +++.+++++|.++..+| ++++|++
T Consensus 1 e~a~~~~~~g~~~~~~--------------------~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQ--------------------GDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHT--------------------THHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHH
Confidence 3678999999999885 889999999999999999 78999999999999999 7999999
Q ss_pred HHHHHhcCCC
Q psy9159 234 WLDKAKAIPV 243 (259)
Q Consensus 234 ~~~kal~l~p 243 (259)
.++++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
No 78
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=3.5e-10 Score=101.92 Aligned_cols=214 Identities=16% Similarity=0.059 Sum_probs=161.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------cCc-H-HH------
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------END-K-EA------ 90 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~~~-~-~~------ 90 (259)
..+.++-..+ .. |+++.|.+.+.++.+..|+..-.+...|.++...|++... +.+ . .+
T Consensus 86 ~~~~~glla~--~~-g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 86 KQTEEALLKL--AE-GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHH--hC-CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3466666666 56 9999999999999999998888888889999988876531 111 1 11
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHH-----------------------H----
Q psy9159 91 --SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGV-----------------------V---- 141 (259)
Q Consensus 91 --~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~-----------------------~---- 141 (259)
..+.+++|+..+++.++..|+++.++..++.++...|++..+...+.... .
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 13568999999999999999999999999999999998875443211110 0
Q ss_pred -HHHHHHHHHccCC----CChhHHHHHHHHHHHhhccchHHHHHHHHHh----------------cCCCCCcHHHHHHHH
Q psy9159 142 -FRDQMNKAIQMAP----KDFTLYSLKGRYQYEISKLSFFERKIAVLIV----------------SDLDEPTAEDAIANC 200 (259)
Q Consensus 142 -a~~~~~kAl~l~P----~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~eAi~~~ 200 (259)
..+.+.++.+..| +++..+..+|..+...++.+.....+...+- .....++.+.+++.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 1135666677788 5899999999999888776544333322111 112247789999999
Q ss_pred HHHHhhCCCCcH--HhHHHHHHHHHHhCCHHHHHHHHH--HHhcCCCCCcc
Q psy9159 201 LKAEELAPAPWK--ENQLLIAKCYIEAGEYAKAVQWLD--KAKAIPVVSYE 247 (259)
Q Consensus 201 ~kAi~l~P~~~~--~~~~~la~~~~~~g~~~eA~~~~~--kal~l~p~~~~ 247 (259)
+++++..| +++ .....+|.++...|++++|.++|+ ++++.+|++..
T Consensus 323 e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 323 EKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred HHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 99999999 778 778899999999999999999999 57778876543
No 79
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-11 Score=99.58 Aligned_cols=126 Identities=16% Similarity=0.071 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~ 174 (259)
.++-+..++.-|..+|+|++.|..+|.++...+++. .+...|.+|+++.|+|+..+..+|.+++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-- 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS----------DALLAYRNALRLAGDNPEILLGLAEALYYQAG-- 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Confidence 567778889999999999999999999999999887 46789999999999999999999998877644
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
.....++...+++++.+|| .++.+.+.||..++..|++++|+...++.+.+.|-++.-
T Consensus 206 ---------------~~~ta~a~~ll~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 206 ---------------QQMTAKARALLRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred ---------------CcccHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 3557999999999999999 789999999999999999999999999999988877653
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=1.2e-10 Score=102.53 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
|+.+++...+.++.+..|.+ .+..+..|.++...|++. +|...++++++.+|++..++.. +.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~--------------~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP--------------KALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 67777777777777666644 566777788888877764 9999999999999999988765 65
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
.+...+...+... .+.+.+......+|..+.++..+|.++... |++++|+..++
T Consensus 85 ~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~--------------------G~~~~A~~~~~ 138 (355)
T cd05804 85 GAFGLGDFSGMRD------HVARVLPLWAPENPDYWYLLGMLAFGLEEA--------------------GQYDRAEEAAR 138 (355)
T ss_pred HHHHhcccccCch------hHHHHHhccCcCCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHH
Confidence 6666665543221 122333344466777777777888887764 88999999999
Q ss_pred HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
++++++| ++..++..+|.++...|++++|+.++++++...|.++
T Consensus 139 ~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 139 RALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 9999999 6788899999999999999999999999999988643
No 81
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.32 E-value=9.4e-10 Score=92.12 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=131.7
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVL---YRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal 106 (259)
+.+..+...+ .. |++++|+..|++++..+|.++.+- +.+|.+|+..+++. +|+..+++.+
T Consensus 34 ~~Y~~A~~~~--~~-g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~--------------~A~~~~e~fi 96 (243)
T PRK10866 34 EIYATAQQKL--QD-GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP--------------LAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHHH--HC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHH
Confidence 3567788888 67 999999999999999999998776 88999999998875 9999999999
Q ss_pred HhCCCChHH---HHHHHHHHHHhhc-----h---hhHHHHHhcHHHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhc
Q psy9159 107 ELAPNNSNT---QKWYGICVGANGQ-----F---QSLKEKIKCGVVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISK 172 (259)
Q Consensus 107 ~~~P~~~~~---~~~la~~~~~~~~-----~---~~~~~~~~~~~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~ 172 (259)
+..|+++.+ ++.+|.+....+. + ............+...+++.|+..|+..- +...+..+...+..
T Consensus 97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 999998765 4555555332321 1 00111122234677899999999999764 33333333332222
Q ss_pred cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
.+. .++..++- .|+|.-|+.-++..++--| +. .++...++.+|..+|..++|.++....
T Consensus 177 ~e~---~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp-~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YEL---SVAEYYTK---RGAYVAVVNRVEQMLRDYP-DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHH---HHHHHHHH---cCchHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111 11111111 4889999999999999888 44 356888999999999999999877654
No 82
>KOG0495|consensus
Probab=99.32 E-value=1.8e-10 Score=104.77 Aligned_cols=175 Identities=18% Similarity=0.101 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++.++|+.+++++++.+|+.+-+|.++|.++.++++.. .|.+.|...+..-|+.+..|..++.+-.
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie--------------~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE--------------MAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH--------------HHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999988765 7777777777777777777766666555
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH-----------------------
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA----------------------- 181 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~----------------------- 181 (259)
..|+.. +|...++++...||+++..|...-++-.+.|..+.....++
T Consensus 731 k~~~~~----------rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 731 KDGQLV----------RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred Hhcchh----------hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 554433 45667777777777777777666665555544332221111
Q ss_pred ------------------------HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 182 ------------------------VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 182 ------------------------~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
.++.. ..++++|.++|.+|+.++| ++..+|...-..+...|.-+.-.+.+.+
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~---e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWS---EKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHH---HHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 11111 3668888888888888888 7788888888888888888888888888
Q ss_pred HhcCCCCCcc
Q psy9159 238 AKAIPVVSYE 247 (259)
Q Consensus 238 al~l~p~~~~ 247 (259)
....+|...+
T Consensus 877 c~~~EP~hG~ 886 (913)
T KOG0495|consen 877 CETAEPTHGE 886 (913)
T ss_pred HhccCCCCCc
Confidence 8888887654
No 83
>KOG3060|consensus
Probab=99.30 E-value=3.8e-10 Score=92.22 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=122.2
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.+ |++++|+++|+..++.||.|..++-+.-.+...+|+-. +|+....+-++.=|+++++|..++.
T Consensus 98 a~-~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l--------------~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 98 AT-GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL--------------EAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred Hh-hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66 99999999999999999999999988777777778754 8999999999999999999999999
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
++...++|. +|.-++++.+-++|.++.++..+|.+++..|.. .+++-|.++|.
T Consensus 163 iY~~~~~f~----------kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~-----------------eN~~~arkyy~ 215 (289)
T KOG3060|consen 163 IYLSEGDFE----------KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA-----------------ENLELARKYYE 215 (289)
T ss_pred HHHhHhHHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----------------HHHHHHHHHHH
Confidence 999999887 567899999999999999999999999887542 67899999999
Q ss_pred HHHhhCCCCcHHhHHHHHHHH
Q psy9159 202 KAEELAPAPWKENQLLIAKCY 222 (259)
Q Consensus 202 kAi~l~P~~~~~~~~~la~~~ 222 (259)
+|++++| .+..+++.+-.|-
T Consensus 216 ~alkl~~-~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 216 RALKLNP-KNLRALFGIYLCG 235 (289)
T ss_pred HHHHhCh-HhHHHHHHHHHHH
Confidence 9999999 7778777665553
No 84
>KOG4162|consensus
Probab=99.27 E-value=1.9e-10 Score=106.19 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~ 175 (259)
++|...+.++-.++|..+..|+..|.++...|+.. ++++.|..|+.+||+++.....+|.++.+.|+
T Consensus 667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~----------EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~--- 733 (799)
T KOG4162|consen 667 DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE----------EAKEAFLVALALDPDHVPSMTALAELLLELGS--- 733 (799)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH----------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---
Confidence 48999999999999999999999999998888776 56789999999999999999999999998754
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.+..++...+..|+++|| .+..+|++||.++..+|+.+.|.++|.-|+++++.+|
T Consensus 734 ---------------~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 734 ---------------PRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred ---------------cchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 455666669999999999 8999999999999999999999999999999998877
No 85
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.27 E-value=3.6e-10 Score=88.20 Aligned_cols=119 Identities=16% Similarity=0.061 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE 169 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~ 169 (259)
+++-.|+.|++.++.....+|.+++.+.+.|.++..+.++....+......+++.-+++||.++|+...+++.+|..|..
T Consensus 2 ~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 2 ERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999987766666677788999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159 170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l 218 (259)
.+.+.-- ...+ ...|++|.+||++|++.+| .+...+..|
T Consensus 82 ~A~l~~d-~~~A--------~~~F~kA~~~FqkAv~~~P-~ne~Y~ksL 120 (186)
T PF06552_consen 82 LAFLTPD-TAEA--------EEYFEKATEYFQKAVDEDP-NNELYRKSL 120 (186)
T ss_dssp HHHH----HHHH--------HHHHHHHHHHHHHHHHH-T-T-HHHHHHH
T ss_pred HHhhcCC-hHHH--------HHHHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 7543100 0001 1348999999999999999 654433333
No 86
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.27 E-value=1.9e-10 Score=105.92 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=121.0
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--C
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--A 109 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~ 109 (259)
+.++..++...+.+++.+|+.+|+++++.+|+++.++-.++.+|.....+.. ........+.+..++++.+ +
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~------~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP------LDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhhhcccC
Confidence 4455454422233569999999999999999999999999999877654431 1123446777777787775 8
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
|.++.+|..+|......|++. .|...+++|++++| ++.+|..+|.++...
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~----------~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~------------------- 466 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTD----------EAYQAINKAIDLEM-SWLNYVLLGKVYELK------------------- 466 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-------------------
Confidence 888888888888877777776 56789999999999 589999999988764
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
|++++|+++|++|+.++| ..+. +.+..-+...-+.+.-.-++.+
T Consensus 467 -G~~~eA~~~~~~A~~L~P-~~pt--~~~~~~~~f~~~~~~~~~~~~~ 510 (517)
T PRK10153 467 -GDNRLAADAYSTAFNLRP-GENT--LYWIENLVFQTSVETVVPYLYR 510 (517)
T ss_pred -CCHHHHHHHHHHHHhcCC-CCch--HHHHHhccccccHHHHHHHHHh
Confidence 899999999999999999 4432 2233333333343333333333
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.26 E-value=1.7e-10 Score=110.68 Aligned_cols=192 Identities=7% Similarity=-0.078 Sum_probs=148.3
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhccc----CcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRE----NDKEASEKYILQGIEYAKKAMELAPNNSNTQK 117 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~----~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~ 117 (259)
.. +++++|++..+..++.+|+.+.+++.+|.++.+.++..... .+.......+ .+.+++-.++...|++..+++
T Consensus 43 ~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 43 SE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALR 120 (906)
T ss_pred hc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHH
Confidence 45 99999999999999999999999999999999888754210 0000011122 677778888888899999999
Q ss_pred HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159 118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI 197 (259)
Q Consensus 118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi 197 (259)
.+|.|+-.+|+.. ++...++++|++||+|+.+..++|..|... +++....-...++......++|.++.
T Consensus 121 ~LA~~Ydk~g~~~----------ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~ 189 (906)
T PRK14720 121 TLAEAYAKLNENK----------KLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE 189 (906)
T ss_pred HHHHHHHHcCChH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 9999999998877 567899999999999999999999988777 66543322222222222347899999
Q ss_pred HHHHHHHhhCCCCcHHh--------HHHHH------------HHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 198 ANCLKAEELAPAPWKEN--------QLLIA------------KCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 198 ~~~~kAi~l~P~~~~~~--------~~~la------------~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
+.+.+.+..+| +.... .-.++ .+|...++++++++.++++++++|.|-.
T Consensus 190 e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 190 EIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 99999999999 54433 22334 8899999999999999999999988653
No 88
>KOG2076|consensus
Probab=99.25 E-value=3.4e-10 Score=106.01 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~ 173 (259)
++++|...+.++|.++|.++.+|+.+|.++...|+.+ ++....-.|--++|++++.|..++....++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~e----------K~l~~~llAAHL~p~d~e~W~~ladls~~~--- 220 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIE----------KALNFWLLAAHLNPKDYELWKRLADLSEQL--- 220 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHH----------HHHHHHHHHHhcCCCChHHHHHHHHHHHhc---
Confidence 3569999999999999999999999999999999876 455666777889999999999999876664
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
|.++.|+-||.+||+.+| .+.......+..|.++|+...|.+.|.+++++.|
T Consensus 221 -----------------~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 221 -----------------GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred -----------------ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 789999999999999999 6778888899999999999999999999999999
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.24 E-value=2.1e-10 Score=90.72 Aligned_cols=146 Identities=13% Similarity=0.029 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPND--PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWY 119 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~l 119 (259)
..+..+.+.+...++.++.+ ...++.+|.++...|++. +|+..+++++.+.|+. +.++..+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~--------------~A~~~~~~al~l~~~~~~~~~~~~~l 78 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA--------------EALQNYYEAMRLEIDPYDRSYILYNI 78 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhccccchhhHHHHHHH
Confidence 56777778887776666666 677788999999888865 9999999999998774 4588999
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc----chHHHHHHHHHhcCCCCCcHHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL----SFFERKIAVLIVSDLDEPTAED 195 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~e 195 (259)
|.++...|++. .+...++++++++|.+...+..+|.++...+.. ..+..+ ...+++
T Consensus 79 g~~~~~~g~~~----------eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A----------~~~~~~ 138 (168)
T CHL00033 79 GLIHTSNGEHT----------KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIA----------EAWFDQ 138 (168)
T ss_pred HHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHH----------HHHHHH
Confidence 99999998887 567899999999999999999999998855421 011111 133668
Q ss_pred HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH
Q psy9159 196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEY 228 (259)
Q Consensus 196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~ 228 (259)
|+.+|++++..+| .+. ...+..+...|++
T Consensus 139 a~~~~~~a~~~~p-~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 139 AAEYWKQAIALAP-GNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHHHHhCc-ccH---HHHHHHHHHhcCC
Confidence 8888889999999 432 3445555566654
No 90
>KOG1174|consensus
Probab=99.24 E-value=9.1e-10 Score=95.58 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA 125 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~ 125 (259)
.+.-+..++-+-....|+|++.+-.+|.+++..|+.. +|+..|+++.-+||.+..+.-.+|.++++
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~--------------~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~ 278 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF--------------QAEDIFSSTLCANPDNVEAMDLYAVLLGQ 278 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch--------------HHHHHHHHHhhCChhhhhhHHHHHHHHHh
Confidence 3444455666778889999999999999999999875 99999999999999999999999999999
Q ss_pred hhchhhHHHHH------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159 126 NGQFQSLKEKI------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA 181 (259)
Q Consensus 126 ~~~~~~~~~~~------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~ 181 (259)
.|+++...... .....|..+.+|+|+++|++..++...|+.+..+
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~----------- 347 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL----------- 347 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc-----------
Confidence 88776432211 1123566778999999999999999999988775
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 182 VLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|+.++|+-+|..|+.+.| ...+.|.-|-.+|...|++.||.-.-+.+...-|.++.
T Consensus 348 ---------~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 348 ---------ERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred ---------cchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 889999999999999999 77888999999999999999999988888888777664
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=2.8e-10 Score=90.32 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHh
Q psy9159 61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIK 137 (259)
Q Consensus 61 ~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~ 137 (259)
.|..+.+++.+|..+...|++. +|+.++++++++.|+. +.++..+|.++...|++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~--------------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~------- 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYA--------------EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD------- 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH-------
Confidence 4566778899999999888875 9999999999998774 468899999999999887
Q ss_pred cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159 138 CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL 217 (259)
Q Consensus 138 ~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~ 217 (259)
.+...++++++++|+++.++..+|.++...+...........+. ..+++|++++++++.++| ++ +..
T Consensus 90 ---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~------~~~~~A~~~~~~a~~~~p-~~---~~~ 156 (172)
T PRK02603 90 ---KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE------ALFDKAAEYWKQAIRLAP-NN---YIE 156 (172)
T ss_pred ---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH------HHHHHHHHHHHHHHhhCc-hh---HHH
Confidence 56789999999999999999999999988765322111111111 447889999999999999 43 444
Q ss_pred HHHHHHHhCC
Q psy9159 218 IAKCYIEAGE 227 (259)
Q Consensus 218 la~~~~~~g~ 227 (259)
.+..+...|+
T Consensus 157 ~~~~~~~~~~ 166 (172)
T PRK02603 157 AQNWLKTTGR 166 (172)
T ss_pred HHHHHHhcCc
Confidence 5555555443
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.22 E-value=5.3e-10 Score=107.84 Aligned_cols=150 Identities=13% Similarity=0.008 Sum_probs=125.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159 52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS 131 (259)
Q Consensus 52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~ 131 (259)
.++--..-..|+.++..+..+.+..+.|++. .|++.++++++.+|+++.+..-+..+++..|+..
T Consensus 21 ~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~--------------~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~- 85 (822)
T PRK14574 21 ALFISGFVVNPAMADTQYDSLIIRARAGDTA--------------PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ- 85 (822)
T ss_pred HHHHcccccCccchhHHHHHHHHHHhCCCHH--------------HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH-
Confidence 3444445578999999999999999999875 9999999999999999654446667777777766
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHH--HHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK--GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA 209 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l--G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~ 209 (259)
.|..++++++ +|.+..++..+ |.++... |++++|++.|+++++.+|
T Consensus 86 ---------~A~~~~eka~--~p~n~~~~~llalA~ly~~~--------------------gdyd~Aiely~kaL~~dP- 133 (822)
T PRK14574 86 ---------EVIDVYERYQ--SSMNISSRGLASAARAYRNE--------------------KRWDQALALWQSSLKKDP- 133 (822)
T ss_pred ---------HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC-
Confidence 5678999998 77777666666 6677664 889999999999999999
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
+++.++..++.++...++.++|++.+++++..+|.+...
T Consensus 134 ~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 134 TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 779999999999999999999999999999999985543
No 93
>KOG1173|consensus
Probab=99.20 E-value=1.5e-09 Score=97.40 Aligned_cols=188 Identities=16% Similarity=0.034 Sum_probs=147.7
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
...++.++ .. ++|++.++..+..++.+|-+++++..---++...|+.. +-...-.+.+...|+
T Consensus 248 ~~~ad~~y--~~-c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n--------------~Lf~lsh~LV~~yP~ 310 (611)
T KOG1173|consen 248 AEKADRLY--YG-CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSN--------------KLFLLSHKLVDLYPS 310 (611)
T ss_pred HHHHHHHH--Hc-ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccc--------------hHHHHHHHHHHhCCC
Confidence 57788888 56 99999999999999999988887755433667777654 555666788899999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHH---HHHhcC-
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIA---VLIVSD- 187 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~---~~~~~~- 187 (259)
.+..|+..|.-+...+... +|.+++.||-.+||+...+|...|..+.-.+..+....+.- +.+-|.
T Consensus 311 ~a~sW~aVg~YYl~i~k~s----------eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYS----------EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred CCcchhhHHHHHHHhcCcH----------HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 9999999998888887776 57899999999999999999999998765544333222221 111111
Q ss_pred ----------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 188 ----------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 188 ----------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
..+++++-|.++|..|+.+.| ..+-+...+|.+....+.+.+|+.+|+++++--+....
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 126899999999999999999 66888999999999999999999999999954444333
No 94
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.20 E-value=4.8e-10 Score=82.60 Aligned_cols=109 Identities=16% Similarity=0.037 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
+++++..|..+...|++. .+...++++++.+|++ +.+++.+|.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA----------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ------------------- 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-------------------
Confidence 356677888888888876 5678899999999987 46899999999875
Q ss_pred CCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 190 EPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
|++++|+.+|++++...|++ ...++..+|.++..+|++++|++.++++++..|.++.....
T Consensus 53 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 53 -GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred -ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88999999999999999843 25679999999999999999999999999999988765544
No 95
>KOG0548|consensus
Probab=99.19 E-value=4.5e-10 Score=100.14 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-------------cCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-------------ENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-------------~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
++++.|+..|.+++...-. |+++..+-.+--..+..... .+...-+.+.+..|+..|.+||..+|+
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7788888888887765433 45544443333222221100 011123456678999999999999999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP 191 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g 191 (259)
++..+-+.|.|+..+|++. .+....+++|+++|+...+|...|.++..+ .
T Consensus 391 Da~lYsNRAac~~kL~~~~----------~aL~Da~~~ieL~p~~~kgy~RKg~al~~m--------------------k 440 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYP----------EALKDAKKCIELDPNFIKAYLRKGAALRAM--------------------K 440 (539)
T ss_pred hhHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHH--------------------H
Confidence 9999999999999999887 456778999999999999999999998776 5
Q ss_pred cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
+|++|++.|++++++|| ++.++.-.+..|+..+.......+..++
T Consensus 441 ~ydkAleay~eale~dp-~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDP-SNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 69999999999999999 7788888888898876444455555555
No 96
>KOG1156|consensus
Probab=99.19 E-value=3.9e-10 Score=102.40 Aligned_cols=171 Identities=12% Similarity=0.131 Sum_probs=150.5
Q ss_pred hhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159 25 FAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK 104 (259)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k 104 (259)
+++....+.++-.++ .. ++|++.+...+.+++.+|++++.+-..|..+..+|+.. +|.+....
T Consensus 4 ~~KE~~lF~~~lk~y--E~-kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~--------------ea~~~vr~ 66 (700)
T KOG1156|consen 4 SPKENALFRRALKCY--ET-KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKE--------------EAYELVRL 66 (700)
T ss_pred ChHHHHHHHHHHHHH--HH-HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchH--------------HHHHHHHH
Confidence 344445677888888 67 99999999999999999999999999999999999875 99999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159 105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI 184 (259)
Q Consensus 105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 184 (259)
++..||.+..+|.-+|.++..-.++. +++++|..|+.++|+|-..|.-++.+..++
T Consensus 67 glr~d~~S~vCwHv~gl~~R~dK~Y~----------eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-------------- 122 (700)
T KOG1156|consen 67 GLRNDLKSHVCWHVLGLLQRSDKKYD----------EAIKCYRNALKIEKDNLQILRDLSLLQIQM-------------- 122 (700)
T ss_pred HhccCcccchhHHHHHHHHhhhhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--------------
Confidence 99999999999999999887776666 578999999999999999999999877666
Q ss_pred hcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 185 VSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 185 ~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
++++-...--.+-+++.| .....|+-.|.+++..|++..|.+.++...+...
T Consensus 123 ------Rd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 123 ------RDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred ------HhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777888888999999 6678899999999999999999998888877653
No 97
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=1.2e-10 Score=77.95 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159 111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (259)
+++.+|..+|.++...+++. +|+..|+++|+++|+++.+|+.+|.++..+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~----------~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-------------------- 50 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYE----------EAIEYFEKAIELDPNNAEAYYNLGLAYMKL-------------------- 50 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHH----------HHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--------------------
T ss_pred CHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------------
Confidence 46888999999999999987 578999999999999999999999999885
Q ss_pred C-cHHHHHHHHHHHHhhCC
Q psy9159 191 P-TAEDAIANCLKAEELAP 208 (259)
Q Consensus 191 g-~~~eAi~~~~kAi~l~P 208 (259)
| ++++|+.+++++++++|
T Consensus 51 ~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 51 GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHST
T ss_pred CccHHHHHHHHHHHHHcCc
Confidence 6 69999999999999998
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=7.1e-10 Score=76.67 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159 115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194 (259)
Q Consensus 115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 194 (259)
+++.+|.++...+++. .+...++++++..|+++.++..+|.++... |+++
T Consensus 2 ~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 51 (100)
T cd00189 2 ALLNLGNLYYKLGDYD----------EALEYYEKALELDPDNADAYYNLAAAYYKL--------------------GKYE 51 (100)
T ss_pred HHHHHHHHHHHHhcHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHH--------------------HHHH
Confidence 4566777777777766 567889999999999999999999998875 6799
Q ss_pred HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
+|+++|++++++.| .....+..+|.++...|++++|.+.+++++...|.
T Consensus 52 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 52 EALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999 66788999999999999999999999999998873
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=4.9e-09 Score=92.81 Aligned_cols=146 Identities=21% Similarity=0.103 Sum_probs=127.5
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
+-.+-..+ .. |++++|.+.+...+...|+|+-.+-..+.++...++.. +|.+.+++++.++|+
T Consensus 310 YG~A~~~~--~~-~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~--------------~A~e~~~kal~l~P~ 372 (484)
T COG4783 310 YGRALQTY--LA-GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK--------------EAIERLKKALALDPN 372 (484)
T ss_pred HHHHHHHH--Hh-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------------HHHHHHHHHHhcCCC
Confidence 44455555 45 99999999999999999999999999999999999875 999999999999999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP 191 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g 191 (259)
.+..+..+|.++...|++. +++..+.+.+.-+|+++..|..|++.|-..++......+.+..++- .|
T Consensus 373 ~~~l~~~~a~all~~g~~~----------eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---~G 439 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQ----------EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---AG 439 (484)
T ss_pred ccHHHHHHHHHHHhcCChH----------HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---CC
Confidence 9999999999999998876 4678889999999999999999999999998876666666554433 49
Q ss_pred cHHHHHHHHHHHHhhC
Q psy9159 192 TAEDAIANCLKAEELA 207 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~ 207 (259)
++++|+..+.+|.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999976
No 100
>KOG4162|consensus
Probab=99.16 E-value=9e-10 Score=101.76 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=111.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
.+.-++|...+.++-+.+|-.+.+|+..|..+...|+.. +|.+.|..|+.+||+++.+...+|.++
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~--------------EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE--------------EAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH--------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 388899999999999999999999999999999988765 999999999999999999999999999
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
...|+...+ .....+..|+++||.++.+|+.+|.++... |+.+.|.+||+-|
T Consensus 729 le~G~~~la--------~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--------------------Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 729 LELGSPRLA--------EKRSLLSDALRLDPLNHEAWYYLGEVFKKL--------------------GDSKQAAECFQAA 780 (799)
T ss_pred HHhCCcchH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------------cchHHHHHHHHHH
Confidence 999965432 123478999999999999999999988764 8899999999999
Q ss_pred HhhCCC
Q psy9159 204 EELAPA 209 (259)
Q Consensus 204 i~l~P~ 209 (259)
+++++.
T Consensus 781 ~qLe~S 786 (799)
T KOG4162|consen 781 LQLEES 786 (799)
T ss_pred HhhccC
Confidence 999983
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=1.2e-10 Score=77.04 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.|++++|+.+|+++++.+| ++..+++.+|.++..+|++++|+.+|+++++++|++|
T Consensus 10 ~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3889999999999999999 8899999999999999999999999999999999875
No 102
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=4.4e-09 Score=93.09 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159 62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV 141 (259)
Q Consensus 62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 141 (259)
|..+.++|..+..++..|... +|+..+...++..|+|+..+-..+.++...++.. +
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d--------------~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~----------~ 358 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYD--------------EALKLLQPLIAAQPDNPYYLELAGDILLEANKAK----------E 358 (484)
T ss_pred ccchHHHHHHHHHHHHhcccc--------------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH----------H
Confidence 778888888888888888765 9999999999999999998888888887777665 5
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159 142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221 (259)
Q Consensus 142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~ 221 (259)
|.+.+++++.++|+.+..+.++|..+++. |++.+|+..+++.+.-+| +++..|..||.+
T Consensus 359 A~e~~~kal~l~P~~~~l~~~~a~all~~--------------------g~~~eai~~L~~~~~~~p-~dp~~w~~LAqa 417 (484)
T COG4783 359 AIERLKKALALDPNSPLLQLNLAQALLKG--------------------GKPQEAIRILNRYLFNDP-EDPNGWDLLAQA 417 (484)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhc--------------------CChHHHHHHHHHHhhcCC-CCchHHHHHHHH
Confidence 77899999999999999999999999885 788999999999999999 779999999999
Q ss_pred HHHhCCHHHHHHHHHHHhcCC
Q psy9159 222 YIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 222 ~~~~g~~~eA~~~~~kal~l~ 242 (259)
|..+|+..+|...+-....+.
T Consensus 418 y~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 418 YAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHhCchHHHHHHHHHHHHhC
Confidence 999888777777766665544
No 103
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.14 E-value=1.4e-09 Score=86.28 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVS 186 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 186 (259)
|..+.+++.+|.++...|++. .+..++++++++.|+. +.+++.+|.++...
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------------- 85 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYA----------EALENYEEALKLEEDPNDRSYILYNMGIIYASN---------------- 85 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc----------------
Confidence 456666788888888888887 5678999999988774 46899999988875
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC--------------HHHHHHHHHHHhcCCCCCc
Q psy9159 187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE--------------YAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~--------------~~eA~~~~~kal~l~p~~~ 246 (259)
|++++|+.++++++++.| ++...+..+|.++..+|+ +++|++.+++++.++|.+.
T Consensus 86 ----g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 86 ----GEHDKALEYYHQALELNP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ----CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 889999999999999999 778999999999999988 6889999999999999875
No 104
>KOG0624|consensus
Probab=99.13 E-value=1.7e-09 Score=92.00 Aligned_cols=163 Identities=20% Similarity=0.180 Sum_probs=128.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG 139 (259)
Q Consensus 60 ~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~ 139 (259)
.+|.+++-++-+|..++..|++. .|+..|..|++.||++..+++..|-++..+|...
T Consensus 33 ~~~advekhlElGk~lla~~Q~s--------------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk--------- 89 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS--------------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSK--------- 89 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH--------------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCc---------
Confidence 35677888888999988888765 9999999999999999999999999998888654
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH-----------------------------HHhcCCCC
Q psy9159 140 VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-----------------------------LIVSDLDE 190 (259)
Q Consensus 140 ~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 190 (259)
-+...+.+.|++.|+...+-...|.+++++|.++..+.-+.. .+......
T Consensus 90 -~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 90 -AALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred -cchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 346778888899998888888888888887765432211111 11111235
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
|+...||....+.+++.| =....+..++.||...|+...||..++.+-.+..+|.|
T Consensus 169 GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred CchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 889999999999999998 44666888899999999999999999999888877664
No 105
>KOG1129|consensus
Probab=99.13 E-value=2e-09 Score=91.05 Aligned_cols=185 Identities=10% Similarity=0.022 Sum_probs=142.3
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.- |-+.+|...++..++..|. ++.+..|+++|....+.. .|+..+.+.+..-|.+.......+.
T Consensus 235 rL-gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~--------------~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 235 RL-GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPE--------------RALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred Hh-cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHH--------------HHHHHHhhhhhcCCchhhhhhhhHH
Confidence 45 9999999999999998775 889999999999988775 9999999999999999887777777
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc---hHHHHHHH------HHhc-----C
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS---FFERKIAV------LIVS-----D 187 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~---~~~~~~~~------~~~~-----~ 187 (259)
++..+++.+ ++.+.|+.+++++|+|.++..-+|.-|+--+.-+ .+.|.+-+ .+|. +
T Consensus 299 i~eam~~~~----------~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 299 IHEAMEQQE----------DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHHHHHhHH----------HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 777666665 5779999999999999988766665444322211 12222221 1111 1
Q ss_pred CCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhhh
Q psy9159 188 LDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY 255 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~ 255 (259)
...++++-++.+|++|++.. |+.-.++|++||.+....|++.-|.++|+-++..+|++. +.++|.
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~---ealnNL 435 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG---EALNNL 435 (478)
T ss_pred HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH---HHHHhH
Confidence 33588999999999999874 534567899999999999999999999999999987766 445554
No 106
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.13 E-value=3e-09 Score=83.07 Aligned_cols=116 Identities=18% Similarity=0.095 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN 126 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~ 126 (259)
|+.|.+.++.....+|.+++.+++=|.++..+.+.. +..+....+++|+.-+++||.++|+..++++.+|.++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk----~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK----QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999998874 3346778999999999999999999999999999999988
Q ss_pred hchhhHH-HHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159 127 GQFQSLK-EKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166 (259)
Q Consensus 127 ~~~~~~~-~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~ 166 (259)
+....-. +.-....+|..+|++|...+|+|..+.-.|...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8654333 222335578899999999999999888877753
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.12 E-value=1.6e-09 Score=74.84 Aligned_cols=98 Identities=27% Similarity=0.368 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHH
Q psy9159 67 VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQM 146 (259)
Q Consensus 67 ~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~ 146 (259)
+++.+|.++...|++. +|+..++++++..|+++.++..+|.++...+++. .+.+.+
T Consensus 2 ~~~~~a~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~ 57 (100)
T cd00189 2 ALLNLGNLYYKLGDYD--------------EALEYYEKALELDPDNADAYYNLAAAYYKLGKYE----------EALEDY 57 (100)
T ss_pred HHHHHHHHHHHHhcHH--------------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 5778888888888765 9999999999999999999999999998887776 567889
Q ss_pred HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 147 ~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
++++.+.|.+..++..+|.++... |++++|..++.++++.+|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 58 EKALELDPDNAKAYYNLGLAYYKL--------------------GKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhCCCcchhHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHccCC
Confidence 999999999999999999988875 779999999999999988
No 108
>KOG1840|consensus
Probab=99.12 E-value=1.6e-09 Score=98.70 Aligned_cols=170 Identities=16% Similarity=0.073 Sum_probs=116.0
Q ss_pred CCcCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH-HhCCCC
Q psy9159 42 GKKDDKAKAYNLTMELNNK--------QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM-ELAPNN 112 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal-~~~P~~ 112 (259)
.. |+|++|+..+++++.. .|.=....-.+|.+|..++++. +....+.+|+...+... .-+|.-
T Consensus 211 ~~-g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~-------eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 211 VQ-GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD-------EAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHhcCCCCHHH
Confidence 55 9999999999999997 5554444445888888888875 33334444444444333 234556
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEP 191 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g 191 (259)
+.++.++|.++...|++..+..-. ..|.+.+++.+- ..|.-+..+..++.++..+ +
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~---e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~--------------------~ 339 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYC---ERALEIYEKLLGASHPEVAAQLSELAAILQSM--------------------N 339 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHH---HHHHHHHHHhhccChHHHHHHHHHHHHHHHHh--------------------c
Confidence 667888999999999888543222 233444444111 1222334455555555543 7
Q ss_pred cHHHHHHHHHHHHhhC-----CCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 192 TAEDAIANCLKAEELA-----PAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~-----P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
++++|+.++++++++- + ++ ...+.+||.+|..+|++++|.+.+++|+++.-
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8999999999999862 3 23 35689999999999999999999999998763
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.12 E-value=2.8e-09 Score=78.47 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVV 141 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 141 (259)
+++++.+|..+...|++. +|+..+++++...|++ +.+++.+|.++...+++. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~--------------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~ 57 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA--------------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA----------D 57 (119)
T ss_pred cHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH----------H
Confidence 577889999999988875 9999999999999987 568889999999999887 4
Q ss_pred HHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159 142 FRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN 214 (259)
Q Consensus 142 a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~ 214 (259)
+...+++++..+|++ +.+++.+|.++... |++++|+.++.++++..| ++..+
T Consensus 58 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--------------------~~~~~A~~~~~~~~~~~p-~~~~~ 112 (119)
T TIGR02795 58 AAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL--------------------GDKEKAKATLQQVIKRYP-GSSAA 112 (119)
T ss_pred HHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh--------------------CChHHHHHHHHHHHHHCc-CChhH
Confidence 678999999999986 57899999988774 889999999999999999 55543
No 110
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=1.2e-08 Score=93.78 Aligned_cols=194 Identities=15% Similarity=0.074 Sum_probs=126.8
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
++-++..+. .. |++++|++.+++....-++...++-..|.++..+|+.. +|...++..|..+|
T Consensus 7 lLY~~~il~--e~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~--------------eA~~~y~~Li~rNP 69 (517)
T PF12569_consen 7 LLYKNSILE--EA-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKE--------------EAEKIYRELIDRNP 69 (517)
T ss_pred HHHHHHHHH--HC-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCC
Confidence 344554555 56 99999999999999989999999999999999999875 99999999999999
Q ss_pred CChHHHHHHHHHHHHhhchh-----hHHHHHhc--------------------HH----HHHHHHHHHHcc---------
Q psy9159 111 NNSNTQKWYGICVGANGQFQ-----SLKEKIKC--------------------GV----VFRDQMNKAIQM--------- 152 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~~~~~-----~~~~~~~~--------------------~~----~a~~~~~kAl~l--------- 152 (259)
+|...+..+..+++...... .....+.. .. .+..++...|..
T Consensus 70 dn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~l 149 (517)
T PF12569_consen 70 DNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNL 149 (517)
T ss_pred CcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999888888874433111 00000000 00 011111111111
Q ss_pred -----CCCChhHHHHHHHHHHHhh----c--------------cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC
Q psy9159 153 -----APKDFTLYSLKGRYQYEIS----K--------------LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA 209 (259)
Q Consensus 153 -----~P~~~~~~~~lG~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~ 209 (259)
+|.-..+...+..-+.... . +-|..-.+++.+. ..|++++|+++.++||+.+|
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd---~~g~~~~Al~~Id~aI~htP- 225 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD---YLGDYEKALEYIDKAIEHTP- 225 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCC-
Confidence 1111111111111111100 0 0011111111110 14999999999999999999
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
..++.|+..|.+|...|++++|.++++.|.++|+.|
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 679999999999999999999999999999999543
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=2.2e-09 Score=84.80 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHh
Q psy9159 96 LQGIEYAKKAMELAPNN--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEI 170 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~ 170 (259)
..+...+.+.++.++.+ ..++..+|.++...+++. .+...+++++.+.|++ +.+|..+|.++...
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA----------EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 35555555555666666 455677788888888877 5678899999998764 35899999998874
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHH-------HhCCHH-------HHHHHHH
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI-------EAGEYA-------KAVQWLD 236 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~ 236 (259)
|++++|+.+|++|+.++| .+...+.++|.++. .+|+++ +|+..++
T Consensus 86 --------------------g~~~eA~~~~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 86 --------------------GEHTKALEYYFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred --------------------CCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 889999999999999999 77888999999999 777766 6677777
Q ss_pred HHhcCCCCCcc
Q psy9159 237 KAKAIPVVSYE 247 (259)
Q Consensus 237 kal~l~p~~~~ 247 (259)
+++..+|.+..
T Consensus 145 ~a~~~~p~~~~ 155 (168)
T CHL00033 145 QAIALAPGNYI 155 (168)
T ss_pred HHHHhCcccHH
Confidence 88888887654
No 112
>KOG1127|consensus
Probab=99.08 E-value=3e-09 Score=100.66 Aligned_cols=162 Identities=17% Similarity=0.081 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+-..|+..+-+++..+|.-..++..||.+|...-+ ...|...|.+|.++||++++++...+-.+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 568889999999999999999999888888886553 359999999999999999999998888888
Q ss_pred HhhchhhHHHH--------------------------HhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHH
Q psy9159 125 ANGQFQSLKEK--------------------------IKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER 178 (259)
Q Consensus 125 ~~~~~~~~~~~--------------------------~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~ 178 (259)
...+.+.+..- ..+.-.+...++.|++.+|++.+.|..+|..|.+.
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s-------- 609 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES-------- 609 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc--------
Confidence 77766543210 01112456789999999999999999999999875
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
|+|.-|++.|.||..++| ....+.+-.|.....+|++.+|+..+.+.+.-
T Consensus 610 ------------Gry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 610 ------------GRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred ------------CceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 889999999999999999 66777888999999999999999999887653
No 113
>KOG0495|consensus
Probab=99.07 E-value=2.6e-08 Score=91.01 Aligned_cols=151 Identities=13% Similarity=-0.007 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHH-----------------------HhcHHHHHHHHHHHHc
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK-----------------------IKCGVVFRDQMNKAIQ 151 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~-----------------------~~~~~~a~~~~~kAl~ 151 (259)
...|+..+.+|++.+|++-++|+.--.+.+...+++.+... .++.+++++.++++|+
T Consensus 600 v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 600 VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 45899999999999999888876555555555555443322 2334567889999999
Q ss_pred cCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC---C-----------CCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159 152 MAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL---D-----------EPTAEDAIANCLKAEELAPAPWKENQLL 217 (259)
Q Consensus 152 l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~g~~~eAi~~~~kAi~l~P~~~~~~~~~ 217 (259)
..|+.+..|.++|.++.++++++....+.-.-+...| | .|..-.|...++++.--|| .+..-|+.
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle 758 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLE 758 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHH
Confidence 9999999999999999888665433332221111111 1 3667777788888877788 66666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 218 la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.-..-...|+.+.|...+.+|++--|.+.
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 66666677888888888888877766654
No 114
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.05 E-value=8e-10 Score=73.03 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=57.2
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
..+..++ .. |++++|+..|+++++.+|+++++++.+|.++...|++. +|+.+++++++++|++
T Consensus 2 ~~a~~~~--~~-g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~--------------~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALY--QQ-GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYD--------------EALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHH--HC-THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTT-
T ss_pred hHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCC
Confidence 4566677 67 99999999999999999999999999999999999876 9999999999999998
Q ss_pred h
Q psy9159 113 S 113 (259)
Q Consensus 113 ~ 113 (259)
|
T Consensus 65 p 65 (65)
T PF13432_consen 65 P 65 (65)
T ss_dssp H
T ss_pred C
Confidence 6
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.05 E-value=6.6e-08 Score=78.84 Aligned_cols=181 Identities=18% Similarity=0.113 Sum_probs=122.1
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka 105 (259)
+..+..+...+ .. |+|.+|+..|++++...|.+ +++.+.+|.+++..|++. +|+..+++-
T Consensus 6 ~~lY~~a~~~~--~~-g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~--------------~A~~~~~~f 68 (203)
T PF13525_consen 6 EALYQKALEAL--QQ-GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE--------------EAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHHH--HC-T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHH--HC-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHH
Confidence 45678888888 67 99999999999999987754 788999999999999875 999999999
Q ss_pred HHhCCCChH---HHHHHHHHHHHhhchh-hHHHHHhcHHHHHHHHHHHHccCCCChhHHHH---HHHHHHHhhccchHHH
Q psy9159 106 MELAPNNSN---TQKWYGICVGANGQFQ-SLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSL---KGRYQYEISKLSFFER 178 (259)
Q Consensus 106 l~~~P~~~~---~~~~la~~~~~~~~~~-~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~---lG~~~~~~~~~~~~~~ 178 (259)
+...|+++. ++++.|.+......-. ...........+...+++.++..|++.-+--. +..+-..+... +-
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~---e~ 145 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH---EL 145 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH---HH
Confidence 999999875 5667777655442111 00122233456788999999999998855422 22222111111 11
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHH
Q psy9159 179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQ 233 (259)
Q Consensus 179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~ 233 (259)
.++..++. .|.|..|+..++.+++.-| +.. .+...++.+|..+|..+.|..
T Consensus 146 ~ia~~Y~~---~~~y~aA~~r~~~v~~~yp-~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 146 YIARFYYK---RGKYKAAIIRFQYVIENYP-DTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHC---TT-HHHHHHHHHHHHHHST-TSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHH---cccHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 11222222 5899999999999999999 554 457889999999999885543
No 116
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=7.9e-10 Score=77.07 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.3
Q ss_pred HHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159 141 VFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l 218 (259)
.|+..++++++.+|+ +..+++.+|.++++. |+|++|+..+++ .+.+| .+...++.+
T Consensus 7 ~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--------------------~~y~~A~~~~~~-~~~~~-~~~~~~~l~ 64 (84)
T PF12895_consen 7 NAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--------------------GKYEEAIELLQK-LKLDP-SNPDIHYLL 64 (84)
T ss_dssp HHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--------------------THHHHHHHHHHC-HTHHH-CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--------------------CCHHHHHHHHHH-hCCCC-CCHHHHHHH
Confidence 678899999999996 567888899999985 889999999999 88888 677888888
Q ss_pred HHHHHHhCCHHHHHHHHHHH
Q psy9159 219 AKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 219 a~~~~~~g~~~eA~~~~~ka 238 (259)
|.|+..+|++++|++.|+++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999986
No 117
>KOG1128|consensus
Probab=99.03 E-value=3.1e-09 Score=97.85 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc------cCcHH--------HHHHHHHHHHHHHHHHHHhCC
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR------ENDKE--------ASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~------~~~~~--------~~~~~~~~A~~~~~kal~~~P 110 (259)
|+..+|-....+-++ .|+++-.|..+|.+..+..-+++. .+... .+.+.++++...++.+++++|
T Consensus 438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 677777777777777 566666666666655432221110 00000 112456677777777777777
Q ss_pred CChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159 111 NNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (259)
-....|+.+|-+...++++. .+.++|.+++.++|++..+|.++...|..+
T Consensus 517 lq~~~wf~~G~~ALqlek~q----------~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-------------------- 566 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQ----------AAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-------------------- 566 (777)
T ss_pred cchhHHHhccHHHHHHhhhH----------HHHHHHHHHhhcCCCchhhhhhhhHHHHHH--------------------
Confidence 77777777766666665554 344666777777777777777777666654
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
++-.+|...+++|++.+- ++..+|-|.-.+....|.+++|++.|.+.+.+.....
T Consensus 567 ~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 445667777777777764 5556666666666677777777777777766655544
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.01 E-value=7.8e-09 Score=99.44 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=123.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHH--
Q psy9159 58 NNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK-- 135 (259)
Q Consensus 58 ~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~-- 135 (259)
..-+|.+.+++..|..+|...+++. +|+..++.+++..|+...+++.+|.++...++...+..-
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~d--------------eai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~ 89 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTD--------------EAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNL 89 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhh
Confidence 4567999999999999998888875 999999999999999999999999988777765432110
Q ss_pred ---H--hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC
Q psy9159 136 ---I--KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP 210 (259)
Q Consensus 136 ---~--~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~ 210 (259)
. ..-..+.+++-..+...|.+-.+++.||.+|-++ |+.++|+..|+++++++| +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~--------------------g~~~ka~~~yer~L~~D~-~ 148 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL--------------------NENKKLKGVWERLVKADR-D 148 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc--------------------CChHHHHHHHHHHHhcCc-c
Confidence 0 0001344566666666777778999999988665 889999999999999999 8
Q ss_pred cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 211 ~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
++.+..++|..|... ++++|++++.+|+...
T Consensus 149 n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 149 NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 899999999999999 9999999999999864
No 119
>KOG1156|consensus
Probab=98.96 E-value=4e-08 Score=89.60 Aligned_cols=192 Identities=11% Similarity=0.017 Sum_probs=130.6
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
.+-..+-.+. .- |+-++|.+..+.++..++.+.-.|+-+|.++..-..+ ++|+..|+.|+.++
T Consensus 43 slAmkGL~L~--~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y--------------~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 43 SLAMKGLTLN--CL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY--------------DEAIKCYRNALKIE 105 (700)
T ss_pred hHHhccchhh--cc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH--------------HHHHHHHHHHHhcC
Confidence 3344444555 44 9999999999999999999999999999998876665 49999999999999
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH-------
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV------- 182 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~------- 182 (259)
|+|-.++.-++.+..+++++.+. ...-.+.++++|.+...|...++.++-.++.......+..
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~----------~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGY----------LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999998754 2344666888999888888777766555443211111100
Q ss_pred ------------HHh-c--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 183 ------------LIV-S--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 183 ------------~~~-~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
.++ + ....|.+++|.++..+--.--- +.....-..|..++.+++.++|+..|+..+..+|+|-+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 000 0 0013555555555443222111 11222344667777777777777777777777777765
Q ss_pred ch
Q psy9159 248 SH 249 (259)
Q Consensus 248 ~~ 249 (259)
.-
T Consensus 255 Yy 256 (700)
T KOG1156|consen 255 YY 256 (700)
T ss_pred HH
Confidence 43
No 120
>KOG4648|consensus
Probab=98.94 E-value=3.6e-09 Score=90.11 Aligned_cols=201 Identities=11% Similarity=-0.003 Sum_probs=135.8
Q ss_pred hhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159 25 FAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK 104 (259)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k 104 (259)
.....++-++++.+| .+ |+|++||+.|.+++..+|.||-.+.+.|.+|+.+..+. .|..-|..
T Consensus 94 L~~~SEiKE~GN~yF--KQ-gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA--------------~AE~DC~~ 156 (536)
T KOG4648|consen 94 LKKASEIKERGNTYF--KQ-GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFA--------------QAEEDCEA 156 (536)
T ss_pred HHhhHHHHHhhhhhh--hc-cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHH--------------HHHHhHHH
Confidence 334456788999999 77 99999999999999999999999999999999988765 78888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh-hc-----cch---
Q psy9159 105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI-SK-----LSF--- 175 (259)
Q Consensus 105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~-~~-----~~~--- 175 (259)
|+++|.....+|...+.+...+|+.. +|++.++.+|+|.|++.+.--.++++-.-. .+ .+.
T Consensus 157 AiaLd~~Y~KAYSRR~~AR~~Lg~~~----------EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~ 226 (536)
T KOG4648|consen 157 AIALDKLYVKAYSRRMQARESLGNNM----------EAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTP 226 (536)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHH----------HHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCc
Confidence 88888766666555555444444433 567788888888888766554444332100 00 000
Q ss_pred HHHHHHHHH----------------------------hcCC-----------CCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159 176 FERKIAVLI----------------------------VSDL-----------DEPTAEDAIANCLKAEELAPAPWKENQL 216 (259)
Q Consensus 176 ~~~~~~~~~----------------------------~~~~-----------~~g~~~eAi~~~~kAi~l~P~~~~~~~~ 216 (259)
..+..++.+ .+.. ..-++++|+....+++-++| .......
T Consensus 227 A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~-s~~~~~s 305 (536)
T KOG4648|consen 227 ARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKP-TPMPDTS 305 (536)
T ss_pred cccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCC-CcCcccC
Confidence 000000000 0000 02456777777778888877 4555566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253 (259)
Q Consensus 217 ~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~ 253 (259)
..+.+---+|...++...++.++.+.|.+...+..++
T Consensus 306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred CCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 6677777778888888888888888887766555443
No 121
>KOG1840|consensus
Probab=98.94 E-value=6e-08 Score=88.52 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=115.4
Q ss_pred cCCHHHHHHHHHHHhh--------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC-CCChH
Q psy9159 44 KDDKAKAYNLTMELNN--------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA-PNNSN 114 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~--------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~-P~~~~ 114 (259)
.+++.+|+.+|++++. .+|.-+.++.+||.+|...|++. +.....+.|++++++..... |+-+.
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~-------EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFA-------EAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChH-------HHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3999999999999987 45667788999999999999876 34444555555555522222 22233
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc-CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159 115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM-APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA 193 (259)
Q Consensus 115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l-~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 193 (259)
.+..++.++...+.++.+..... .+.+.+.++... +|.-+..+.+||.+|+.+ |+|
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q---~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~--------------------gk~ 383 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQ---KALKIYLDAPGEDNVNLAKIYANLAELYLKM--------------------GKY 383 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHH---HHHHHHHhhccccchHHHHHHHHHHHHHHHh--------------------cch
Confidence 34445566666666654332222 222333333222 235567889999998886 889
Q ss_pred HHHHHHHHHHHhhC--------CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 194 EDAIANCLKAEELA--------PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 194 ~eAi~~~~kAi~l~--------P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
++|.+.|++|+++. + .......+||..|...+++.+|.+.|.+++.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999975 2 223457889999999999999999999998754
No 122
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.91 E-value=1.2e-06 Score=72.39 Aligned_cols=211 Identities=18% Similarity=0.066 Sum_probs=136.0
Q ss_pred HHhhhhhhhhhhcc-------CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcc
Q psy9159 15 FVQFGECAELFAVN-------NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRR 84 (259)
Q Consensus 15 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~ 84 (259)
+.....|....... ++++.++...+ .. |++++|+..|+.+...+|.+ ..+...++.+++..+++.
T Consensus 14 ~~~~~~cs~~~~~~~~~~~p~~~LY~~g~~~L--~~-gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~-- 88 (254)
T COG4105 14 LVASTGCSGDKDKNGVYNLPASELYNEGLTEL--QK-GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD-- 88 (254)
T ss_pred HHHhccCCcchhhccccCCCHHHHHHHHHHHH--hc-CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH--
Confidence 33345565554431 34577787777 56 99999999999999987755 577888888888888765
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH
Q psy9159 85 ENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW-YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163 (259)
Q Consensus 85 ~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~-la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l 163 (259)
+|+...++-+.+.|+++++-+. +=..++..-..............+...+++.|+--|+..-+--..
T Consensus 89 ------------~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~ 156 (254)
T COG4105 89 ------------LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK 156 (254)
T ss_pred ------------HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 9999999999999999987322 212222222222111222233467788899999999976433222
Q ss_pred HHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 164 G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.++-+-...+...+..++.-+.- .|.+.-|+.-++..++.-| +.. +++..+..+|..+|-.++|.+.-+-.-.
T Consensus 157 ~~i~~~~d~LA~~Em~IaryY~k---r~~~~AA~nR~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 157 ARIVKLNDALAGHEMAIARYYLK---RGAYVAAINRFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 22111111111111122211111 3789999999999999876 433 5678888999999999999887555444
Q ss_pred CCCCCc
Q psy9159 241 IPVVSY 246 (259)
Q Consensus 241 l~p~~~ 246 (259)
-.|+++
T Consensus 233 N~p~s~ 238 (254)
T COG4105 233 NYPDSQ 238 (254)
T ss_pred cCCCCc
Confidence 455553
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=5.7e-09 Score=92.57 Aligned_cols=70 Identities=24% Similarity=0.072 Sum_probs=65.0
Q ss_pred ccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH---hHHHHHHHHHHhCC
Q psy9159 151 QMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE---NQLLIAKCYIEAGE 227 (259)
Q Consensus 151 ~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~---~~~~la~~~~~~g~ 227 (259)
.-+|+++.+|+++|..|+.. |+|++|+.+|++|++++| ++.. +|+++|.||..+|+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l--------------------GryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK--------------------GRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREE 127 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCC
Confidence 37999999999999999885 889999999999999999 6664 49999999999999
Q ss_pred HHHHHHHHHHHhcC
Q psy9159 228 YAKAVQWLDKAKAI 241 (259)
Q Consensus 228 ~~eA~~~~~kal~l 241 (259)
+++|++++++|+++
T Consensus 128 ~dEAla~LrrALel 141 (453)
T PLN03098 128 GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999998
No 124
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.90 E-value=3.1e-08 Score=83.75 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=89.3
Q ss_pred HHHHHHHHHH-HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 114 NTQKWYGICV-GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 114 ~~~~~la~~~-~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
..++..+..+ ...+++. .+...|++.++..|++ +.+++++|.+|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~----------~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~------------------- 193 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQD----------DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK------------------- 193 (263)
T ss_pred HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-------------------
Confidence 4455555544 2345555 5678899999999998 48999999999875
Q ss_pred CCcHHHHHHHHHHHHhhCCCC--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 190 EPTAEDAIANCLKAEELAPAP--WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
|++++|+.+|+++++..|++ .+.+++.+|.++..+|++++|++.|+++++..|++...+...
T Consensus 194 -g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 194 -GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred -CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 88999999999999998832 357799999999999999999999999999999987655543
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.90 E-value=6.4e-08 Score=74.58 Aligned_cols=127 Identities=20% Similarity=0.134 Sum_probs=101.8
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal 106 (259)
..+..+...+ .. ++...+...+++.++.+|++ +.+.+.+|.++...|++. +|...+++++
T Consensus 13 ~~y~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~--------------~A~~~l~~~~ 75 (145)
T PF09976_consen 13 ALYEQALQAL--QA-GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD--------------EAKAALEKAL 75 (145)
T ss_pred HHHHHHHHHH--HC-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHH
Confidence 4456666666 56 89999999999999999999 667777889998888765 9999999999
Q ss_pred HhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159 107 ELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 107 ~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
+..|+. +.+...++.++...|++.. +...++. +.-.|-.+.++..+|.++...
T Consensus 76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~----------Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~------------- 131 (145)
T PF09976_consen 76 ANAPDPELKPLARLRLARILLQQGQYDE----------ALATLQQ-IPDEAFKALAAELLGDIYLAQ------------- 131 (145)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHcCCHHH----------HHHHHHh-ccCcchHHHHHHHHHHHHHHC-------------
Confidence 988776 4567788999988888874 4455544 344555667889999999875
Q ss_pred HhcCCCCCcHHHHHHHHHHHH
Q psy9159 184 IVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi 204 (259)
|++++|+..|++|+
T Consensus 132 -------g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 -------GDYDEARAAYQKAL 145 (145)
T ss_pred -------CCHHHHHHHHHHhC
Confidence 88999999999985
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=4e-09 Score=73.44 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 94 YILQGIEYAKKAMELAPN--NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
.+++|+.+++++++.+|+ ++..++++|.++...|++. +|...+++ ++.+|.++..++.+|++++++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~----------~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l- 71 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE----------EAIELLQK-LKLDPSNPDIHYLLARCLLKL- 71 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH----------HHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH----------HHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-
Confidence 467999999999999996 4666777899999999987 45677788 899999999999999999986
Q ss_pred ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
|++++|+++|++|
T Consensus 72 -------------------~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 -------------------GKYEEAIKALEKA 84 (84)
T ss_dssp -------------------T-HHHHHHHHHHH
T ss_pred -------------------CCHHHHHHHHhcC
Confidence 8899999999986
No 127
>KOG0543|consensus
Probab=98.88 E-value=6.6e-08 Score=84.20 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159 114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA 193 (259)
Q Consensus 114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 193 (259)
.+|.+++.++..+..+. .|+....++|.++|+|.-++|..|.++..+ |.|
T Consensus 258 ~~~lNlA~c~lKl~~~~----------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--------------------~e~ 307 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYK----------EAIESCNKVLELDPNNVKALYRRGQALLAL--------------------GEY 307 (397)
T ss_pred HHhhHHHHHHHhhhhHH----------HHHHHHHHHHhcCCCchhHHHHHHHHHHhh--------------------ccH
Confidence 35677888887777765 567888999999999999999999999876 779
Q ss_pred HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcCCCC
Q psy9159 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAIPVV 244 (259)
Q Consensus 194 ~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l~p~ 244 (259)
+.|+..|++|++++| +|..+...|..|-.+..++.+. .+.|.+.+..-+.
T Consensus 308 ~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 308 DLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999 7899999999999888876655 8899998876653
No 128
>KOG2003|consensus
Probab=98.87 E-value=1.6e-08 Score=89.01 Aligned_cols=190 Identities=14% Similarity=0.082 Sum_probs=101.4
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHhhchh-cc---------------------cCcH
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPD-VLYRLAKACHCLYDIK-RR---------------------ENDK 88 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~-~~---------------------~~~~ 88 (259)
+-.+..++ .+ |+++.|++.++-.-+.+....+ +-.+|...++..|... -+ +++.
T Consensus 423 i~ka~~~l--k~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 423 INKAGELL--KN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhHHHHHH--hc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 45677788 68 9999999999887776544332 3344555555444211 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159 89 EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY 168 (259)
Q Consensus 89 ~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~ 168 (259)
.-..+.+++|.+.|++||.-+..-.+++++.|.....+|+.+ ++.+++-|.-.+--+++.+++.++.+|.
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld----------eald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD----------EALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 011223445555555555555545555555555444444443 2334444443344445555555555543
Q ss_pred HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
.+ .+...||+++.++.++-| ..+.+...||..|-..|+...|.+++=..-.--|-|-|.
T Consensus 570 ~l--------------------ed~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 570 LL--------------------EDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred Hh--------------------hCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 33 345566666666666666 345556666666666666666666666666666666665
Q ss_pred hhhhhhh
Q psy9159 249 HDLSTTY 255 (259)
Q Consensus 249 ~~~~~~~ 255 (259)
.+|+.-|
T Consensus 629 iewl~ay 635 (840)
T KOG2003|consen 629 IEWLAAY 635 (840)
T ss_pred HHHHHHH
Confidence 5555433
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=1.9e-07 Score=71.96 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHh
Q psy9159 97 QGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEI 170 (259)
Q Consensus 97 ~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~ 170 (259)
.+...+++.++-.|+. ..+...+|.++...|++. .+...|++++...|+. +.+...|+.++...
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~----------~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD----------EAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 6677788999999998 555667788888888887 5678889999987765 35778888888764
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
|++++|+..++.. .-.| ..+.++..+|.+|...|++++|+..|++|+
T Consensus 99 --------------------~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 --------------------GQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --------------------CCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8899999999763 3334 456678889999999999999999999985
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=2.4e-08 Score=77.35 Aligned_cols=107 Identities=8% Similarity=-0.117 Sum_probs=90.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 104 kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
....+.++.-+..+.+|.-+...|++. +|...|.-...+||.++.+|..||.++..+
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~----------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~------------- 84 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLD----------EAETFFRFLCIYDFYNPDYTMGLAAVCQLK------------- 84 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-------------
Confidence 344555666666677777777778776 456777777889999999999999988764
Q ss_pred HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
+.|++|+..|..|..+++ +++...++.|.||..+|+.++|+..|..+++.
T Consensus 85 -------k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 85 -------KQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred -------HHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 779999999999999999 67888999999999999999999999999983
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.85 E-value=4.5e-09 Score=69.93 Aligned_cols=61 Identities=28% Similarity=0.396 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
.|++++|++.|+++++.+| ++..+++.+|.||...|++++|.+.+++++..+|+++.-..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4899999999999999999 789999999999999999999999999999999987654433
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=2.4e-07 Score=77.62 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHhhchhhHHHHHhcH
Q psy9159 63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQ---KWYGICVGANGQFQSLKEKIKCG 139 (259)
Q Consensus 63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~---~~la~~~~~~~~~~~~~~~~~~~ 139 (259)
.+++.++..|..+...|++. +|++.+++.+...|+.+.+. +++|.++...+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~--------------~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~--------- 86 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK--------------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLP--------- 86 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHH---------
Confidence 35666777778888878765 99999999999999998876 88999999998887
Q ss_pred HHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159 140 VVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSD----LDEPTAEDAIANCLKAEELAPAPWK 212 (259)
Q Consensus 140 ~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~eAi~~~~kAi~l~P~~~~ 212 (259)
.|...+++.++++|+++ .+++.+|.++...+.- ++.. .... ..+....+|+..|++.++.-| +..
T Consensus 87 -~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~-~~~~-----~~~~~~~~rD~~~~~~A~~~~~~li~~yP-~S~ 158 (243)
T PRK10866 87 -LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS-ALQG-----FFGVDRSDRDPQHARAAFRDFSKLVRGYP-NSQ 158 (243)
T ss_pred -HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh-hhhh-----ccCCCccccCHHHHHHHHHHHHHHHHHCc-CCh
Confidence 56789999999999987 4578888776444210 0000 0000 012335788999999999999 442
Q ss_pred Hh-----------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 213 EN-----------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 213 ~~-----------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
.+ -+..|..|.+.|++..|+.-++.+++--|+++...+.+
T Consensus 159 ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal 215 (243)
T PRK10866 159 YTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL 215 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence 11 25677889999999999999999999999988776654
No 133
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.7e-07 Score=77.37 Aligned_cols=173 Identities=12% Similarity=0.106 Sum_probs=137.1
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
+..+++.-.++. .+ .++++|++..++..+..|+.-.+ .+|..|+.+.+.. ...++.+.|+..+++|++.
T Consensus 141 ~~AlqqLl~IYQ-~t-reW~KAId~A~~L~k~~~q~~~~--eIAqfyCELAq~~-------~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 141 EGALQQLLNIYQ-AT-REWEKAIDVAERLVKLGGQTYRV--EIAQFYCELAQQA-------LASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHcCCccchh--HHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHhh
Confidence 445666666663 55 89999999999999988876554 5777777766533 3345567999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-hHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-TLYSLKGRYQYEISKLSFFERKIAVLIVSD 187 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 187 (259)
+|++..+-..+|.+....|++. .+.+.++.+++.||... ++.-.|-.+|.++
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~----------~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l----------------- 262 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQ----------KAVEALERVLEQNPEYLSEVLEMLYECYAQL----------------- 262 (389)
T ss_pred CccceehhhhhhHHHHhccchH----------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-----------------
Confidence 9999999999999999999987 46788999999999854 5667777777664
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
|+.++.+.++.++++..| . +.+-+.++..-....=.+.|..++.+-+...|+
T Consensus 263 ---g~~~~~~~fL~~~~~~~~-g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 263 ---GKPAEGLNFLRRAMETNT-G-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred ---CCHHHHHHHHHHHHHccC-C-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 889999999999999988 3 566677887777777788888888887777765
No 134
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.84 E-value=7.8e-09 Score=68.76 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=58.8
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.. |++++|+..|++++..+|+++++++.+|.+|...|++. +|...+++++..+|+++.++..++.
T Consensus 3 ~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------------~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQ-GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--------------EAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HT-THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--------------HHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hc-cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45 99999999999999999999999999999999999875 9999999999999999887766554
No 135
>KOG1127|consensus
Probab=98.82 E-value=1.5e-07 Score=89.47 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK 172 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~ 172 (259)
+....|+..+-+++.++|..+.++..+|.++....+.. .|..+|.+|.++||+++.++-.....|.+..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~----------RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK----------RAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 34678999999999999999999999999987665332 57899999999999999999999888766544
Q ss_pred cchHH----HHH---------HHHH-hc--CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159 173 LSFFE----RKI---------AVLI-VS--DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLD 236 (259)
Q Consensus 173 ~~~~~----~~~---------~~~~-~~--~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 236 (259)
-+... ++. -.+. .| .+..+++.+|+.+|+.|+..+| ...+.|..||.+|..-|++.-|++.|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 22111 000 0111 11 1346899999999999999999 668999999999999999999999999
Q ss_pred HHhcCCCCC
Q psy9159 237 KAKAIPVVS 245 (259)
Q Consensus 237 kal~l~p~~ 245 (259)
||..++|.+
T Consensus 621 kAs~LrP~s 629 (1238)
T KOG1127|consen 621 KASLLRPLS 629 (1238)
T ss_pred hhHhcCcHh
Confidence 999999765
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.82 E-value=2.1e-06 Score=74.61 Aligned_cols=185 Identities=21% Similarity=0.141 Sum_probs=127.0
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc--------c---CcHHHHHH-------
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR--------E---NDKEASEK------- 93 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~--------~---~~~~~~~~------- 93 (259)
+..+..++ .. |++..|..-..++++..|.+++++....++|...|++..- + ....+...
T Consensus 157 ltrarlll--~~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 157 LTRARLLL--NR-RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHH--hC-CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 45555666 56 9999999999999999999999999999999999987530 0 00000000
Q ss_pred -HH-----HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhhchhhHHHHHhcH---------------------HHH
Q psy9159 94 -YI-----LQGIEYAKKAMELAP----NNSNTQKWYGICVGANGQFQSLKEKIKCG---------------------VVF 142 (259)
Q Consensus 94 -~~-----~~A~~~~~kal~~~P----~~~~~~~~la~~~~~~~~~~~~~~~~~~~---------------------~~a 142 (259)
.+ +++.+-+...++--| +++..-..++.-+...|+.+.+..-+.+. ..-
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l 313 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPL 313 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHH
Confidence 00 011111111111111 12333333344444444444433222111 133
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHH
Q psy9159 143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCY 222 (259)
Q Consensus 143 ~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~ 222 (259)
++..++.++..|++|..+..||+.|++. +.+.+|-.+|+.|++..| + ...+..+|.++
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~--------------------~~w~kA~~~leaAl~~~~-s-~~~~~~la~~~ 371 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKN--------------------KLWGKASEALEAALKLRP-S-ASDYAELADAL 371 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHhcCC-C-hhhHHHHHHHH
Confidence 5778899999999999999999999875 679999999999999999 4 67799999999
Q ss_pred HHhCCHHHHHHHHHHHhcC
Q psy9159 223 IEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 223 ~~~g~~~eA~~~~~kal~l 241 (259)
-.+|+..+|.+..++++.+
T Consensus 372 ~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 372 DQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 9999999999999999853
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.1e-07 Score=84.46 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~ 173 (259)
.++.|++.+++..+.+|+ +...++.++...++-. +|.+.+.++|+.+|.+...+...+.++...
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~----------~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k--- 247 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV----------EAIRLLNEALKENPQDSELLNLQAEFLLSK--- 247 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---
Confidence 467999999999999986 3445666665443322 577889999999999999999999988774
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
++++.|+...++|+++.| +....|..|+.+|..+|++++|+-.++-+-
T Consensus 248 -----------------~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 -----------------KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -----------------CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 889999999999999999 778999999999999999999998877543
No 138
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=1.9e-08 Score=67.92 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
.+++++|++++++++.++| +.+..+..+|.++..+|++++|++.++++++..|++++-.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred CCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3889999999999999999 7899999999999999999999999999999999776543
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=1e-06 Score=81.13 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=123.7
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc-----hh-------c-----c-----------
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYD-----IK-------R-----R----------- 84 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-----~~-------~-----~----------- 84 (259)
.++..++ .. |++++|...|+..|+.+|+|...+..+..+...... .. + +
T Consensus 43 ~rA~ll~--kL-g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~ 119 (517)
T PF12569_consen 43 KRAELLL--KL-GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD 119 (517)
T ss_pred HHHHHHH--Hc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc
Confidence 3444454 45 999999999999999999999999888888722211 00 0 0
Q ss_pred --cCcH------------------------------HHHHHHHHHHHHHHHHHHHhC----------CCCh----HHHHH
Q psy9159 85 --ENDK------------------------------EASEKYILQGIEYAKKAMELA----------PNNS----NTQKW 118 (259)
Q Consensus 85 --~~~~------------------------------~~~~~~~~~A~~~~~kal~~~----------P~~~----~~~~~ 118 (259)
.++. ..+...+.+-..-+...++.. ++.| ++++.
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 0000 011112222233333333221 1222 34455
Q ss_pred HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159 119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198 (259)
Q Consensus 119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~ 198 (259)
++..+...|++. .|.++.++||+.+|+.++.|+..|+++-.. |++.+|.+
T Consensus 200 lAqhyd~~g~~~----------~Al~~Id~aI~htPt~~ely~~KarilKh~--------------------G~~~~Aa~ 249 (517)
T PF12569_consen 200 LAQHYDYLGDYE----------KALEYIDKAIEHTPTLVELYMTKARILKHA--------------------GDLKEAAE 249 (517)
T ss_pred HHHHHHHhCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHC--------------------CCHHHHHH
Confidence 677777777776 578899999999999999999999999774 88999999
Q ss_pred HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
+++.|.++|+ ..-..-.--+..+.+.|+.++|.+.+.....-+
T Consensus 250 ~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 250 AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999999999 444455567888999999999999998886655
No 140
>KOG0543|consensus
Probab=98.77 E-value=1.7e-07 Score=81.67 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=91.6
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCC----C-----------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHH
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQP----N-----------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p----~-----------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~ 97 (259)
+.+..+| .. |+|..|...|++++..-+ . -..++.+++.+|..++.+. +
T Consensus 213 e~Gn~~f--K~-gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~--------------~ 275 (397)
T KOG0543|consen 213 ERGNVLF--KE-GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK--------------E 275 (397)
T ss_pred HhhhHHH--hh-chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH--------------H
Confidence 4556677 45 999999999999876322 1 1345677788888777664 9
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
|+..|.++|+++|+|..+++.-|.++..++++. .|+..|+++++++|+|..+...|..+-.+.
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~----------~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYD----------LARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988 567899999999999999999988765443
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=1.6e-07 Score=80.63 Aligned_cols=155 Identities=14% Similarity=-0.014 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
|++++|+..+.+. .+.+.....-.+|..+++. +.|...+++.-+.+.|..-....-+++-.
T Consensus 116 ~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~--------------dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 116 GDYEEALKLLHKG-----GSLELLALAVQILLKMNRP--------------DLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp CHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-H--------------HHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCH--------------HHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 6666666655543 4455555555666666654 48888888888888877666555566655
Q ss_pred Hhhc--hhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159 125 ANGQ--FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK 202 (259)
Q Consensus 125 ~~~~--~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k 202 (259)
..|. +. .+...|++.-+..|..+..++.++.++..+ |+|++|.+.+++
T Consensus 177 ~~g~e~~~----------~A~y~f~El~~~~~~t~~~lng~A~~~l~~--------------------~~~~eAe~~L~~ 226 (290)
T PF04733_consen 177 ATGGEKYQ----------DAFYIFEELSDKFGSTPKLLNGLAVCHLQL--------------------GHYEEAEELLEE 226 (290)
T ss_dssp HHTTTCCC----------HHHHHHHHHHCCS--SHHHHHHHHHHHHHC--------------------T-HHHHHHHHHH
T ss_pred HhCchhHH----------HHHHHHHHHHhccCCCHHHHHHHHHHHHHh--------------------CCHHHHHHHHHH
Confidence 5553 22 456778887777788888888888877764 889999999999
Q ss_pred HHhhCCCCcHHhHHHHHHHHHHhCCH-HHHHHHHHHHhcCCCCCccch
Q psy9159 203 AEELAPAPWKENQLLIAKCYIEAGEY-AKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 203 Ai~l~P~~~~~~~~~la~~~~~~g~~-~eA~~~~~kal~l~p~~~~~~ 249 (259)
|++.+| .++....+++.+...+|+. +.+.+++.+....+|..+--+
T Consensus 227 al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 227 ALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 999999 6789999999999999988 667788888888888766533
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=2.6e-07 Score=78.13 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
+..+..++. .. |+|++|+..|+..++.+|++ +.+++.+|.+|+..|++. +|+..|+++++.
T Consensus 146 Y~~A~~l~~-~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~--------------~A~~~f~~vv~~ 209 (263)
T PRK10803 146 YNAAIALVQ-DK-SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD--------------DAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHH-hc-CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHH
Confidence 555555531 45 99999999999999999999 689999999999999875 999999999999
Q ss_pred CCC---ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHH
Q psy9159 109 APN---NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163 (259)
Q Consensus 109 ~P~---~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~l 163 (259)
.|+ .+++++.+|.++...|+.. .++..|+++++..|++..+-...
T Consensus 210 yP~s~~~~dAl~klg~~~~~~g~~~----------~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQDKGDTA----------KAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred CCCCcchhHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCCHHHHHHH
Confidence 988 4777788899988888776 56789999999999988654443
No 143
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.73 E-value=4.2e-07 Score=74.10 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcH
Q psy9159 63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGICVGANGQFQSLKEKIKCG 139 (259)
Q Consensus 63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~ 139 (259)
.+++.++..|..++..|++. +|+..+++.+...|+.+ .+.+++|.++...+++.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~--------------~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~--------- 59 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYE--------------EAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYE--------- 59 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HH--------------HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HH---------
T ss_pred CCHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHH---------
Confidence 35788899999999999875 99999999999998865 55788888888888877
Q ss_pred HHHHHHHHHHHccCCCChh---HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh--
Q psy9159 140 VVFRDQMNKAIQMAPKDFT---LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN-- 214 (259)
Q Consensus 140 ~~a~~~~~kAl~l~P~~~~---~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~-- 214 (259)
.+...+++.++..|+++. +++.+|.+++....-. +.....++...+|+..|+..+..-| +...+
T Consensus 60 -~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~---------~~~~~D~~~~~~A~~~~~~li~~yP-~S~y~~~ 128 (203)
T PF13525_consen 60 -EAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI---------LRSDRDQTSTRKAIEEFEELIKRYP-NSEYAEE 128 (203)
T ss_dssp -HHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH---------H-TT---HHHHHHHHHHHHHHHH-T-TSTTHHH
T ss_pred -HHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc---------hhcccChHHHHHHHHHHHHHHHHCc-CchHHHH
Confidence 567888999999999884 7899998877653210 0001123557899999999999999 44222
Q ss_pred ---------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 215 ---------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 215 ---------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
-+.+|..|.+.|++..|+.-++.+++.-|+++...+.+
T Consensus 129 A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al 181 (203)
T PF13525_consen 129 AKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEAL 181 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 25678899999999999999999999999988765543
No 144
>KOG1128|consensus
Probab=98.73 E-value=1.1e-07 Score=87.76 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++|+++...++..++++|-..+.|+.+|.+..++++.. .|..+|.+++.++|++.++|.+++-++.
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q--------------~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ--------------AAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH--------------HHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 89999999999999999999999999999999998865 9999999999999999999999999988
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
+.++-. ++...+.+|++.+-.++.+|-+.-.+.... |.+++|++.|.+.+
T Consensus 565 ~~~~k~----------ra~~~l~EAlKcn~~~w~iWENymlvsvdv--------------------ge~eda~~A~~rll 614 (777)
T KOG1128|consen 565 RLKKKK----------RAFRKLKEALKCNYQHWQIWENYMLVSVDV--------------------GEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhhH----------HHHHHHHHHhhcCCCCCeeeechhhhhhhc--------------------ccHHHHHHHHHHHH
Confidence 887654 466788999999999999998877666554 77999999999999
Q ss_pred hhCC
Q psy9159 205 ELAP 208 (259)
Q Consensus 205 ~l~P 208 (259)
++.-
T Consensus 615 ~~~~ 618 (777)
T KOG1128|consen 615 DLRK 618 (777)
T ss_pred Hhhh
Confidence 8754
No 145
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=8.4e-07 Score=68.79 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=96.4
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHH
Q psy9159 55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKE 134 (259)
Q Consensus 55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~ 134 (259)
..+....++.-+..+..|.-.++.|++. +|...|+-..-.+|.|+..|..||.++...+++.
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~--------------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~---- 88 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLD--------------EAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQ---- 88 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHH----
Confidence 3444556677788889999999999875 9999999999999999999999999999888887
Q ss_pred HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 135 ~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
.|...|..|..+++++|...+..|.+++.+ |+.+.|+.+|+-+++ .|
T Consensus 89 ------~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l--------------------~~~~~A~~~f~~a~~-~~ 135 (165)
T PRK15331 89 ------KACDLYAVAFTLLKNDYRPVFFTGQCQLLM--------------------RKAAKARQCFELVNE-RT 135 (165)
T ss_pred ------HHHHHHHHHHHcccCCCCccchHHHHHHHh--------------------CCHHHHHHHHHHHHh-Cc
Confidence 567899999999999999999999999886 779999999999999 56
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=1e-06 Score=78.46 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=94.3
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
.+....-.++. .+ ++++.|++++++..+.+|+ +...+++++..+++.. +|+..+.+++...
T Consensus 170 yLv~~Ll~~l~-~t-~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~--------------~AI~ll~~aL~~~ 230 (395)
T PF09295_consen 170 YLVDTLLKYLS-LT-QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV--------------EAIRLLNEALKEN 230 (395)
T ss_pred HHHHHHHHHHh-hc-ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH--------------HHHHHHHHHHHhC
Confidence 33444555553 44 8999999999999998864 6667899998776543 9999999999999
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK 172 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~ 172 (259)
|.++..+...+..+...+++. .|....++|+++.|++...|+.|+.+|..+++
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~----------lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYE----------LALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 999988888888887777775 57889999999999999999999999988633
No 147
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.63 E-value=1e-05 Score=64.09 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH-
Q psy9159 45 DDKAKAYNLTMELNN--KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI- 121 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~- 121 (259)
+.+..++..+...+. ..+.....+...+..+...+++. .+...+.+++..++++.......+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE--------------EALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH--------------HHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 888888888888886 67888888888888887777654 7777888888777776555555555
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC---ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK---DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~ 198 (259)
++...+++. .+...+++++..+|. ....+..++..+... +++++|+.
T Consensus 139 ~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~ 188 (291)
T COG0457 139 ALYELGDYE----------EALELYEKALELDPELNELAEALLALGALLEAL--------------------GRYEEALE 188 (291)
T ss_pred HHHHcCCHH----------HHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh--------------------cCHHHHHH
Confidence 555555554 445666776666663 333333343332221 45666666
Q ss_pred HHHHHHhhCCCC-cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 199 NCLKAEELAPAP-WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 199 ~~~kAi~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.+.+++...| . ....+..++.++...+++++|+..+.+++...|.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 189 LLEKALKLNP-DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHhhCc-ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6666666666 3 3455566666666666666666666666665554
No 148
>KOG3785|consensus
Probab=98.63 E-value=1.7e-06 Score=74.35 Aligned_cols=194 Identities=16% Similarity=0.106 Sum_probs=124.0
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP-DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
.+.+.+.++ .+ .+|.-|+.+++-....+.+.. ++-..+|.+++.+|++. +|+..|+-+.+.+
T Consensus 25 K~P~Ledfl--s~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~--------------~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 25 KMPELEDFL--SN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE--------------EALNVYTFLMNKD 87 (557)
T ss_pred cCchHHHHH--hc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH--------------HHHHHHHHHhccC
Confidence 345567777 56 888888888887776554332 45556788888888875 8888888888877
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHH----HHHHHHHHHHccCCCCh--hHHHHHHHHHHHhhccchHHHHHHHH
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGV----VFRDQMNKAIQMAPKDF--TLYSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~----~a~~~~~kAl~l~P~~~--~~~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
.-+++.+.+++-+...+|.+..+......+. ...=.+.-|.+++...- ..+..|+..... .-.+++.
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Ed-------qLSLAsv 160 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLED-------QLSLASV 160 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHH-------HHhHHHH
Confidence 7777778888888888888775433222110 00001111222221110 111112111100 0001111
Q ss_pred HhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
.+- .-.|.+||+.|++.+.-+| .....-.++|.||.++.-++-+.+.++--++.-|+++-.+++.
T Consensus 161 hYm---R~HYQeAIdvYkrvL~dn~-ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 161 HYM---RMHYQEAIDVYKRVLQDNP-EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred HHH---HHHHHHHHHHHHHHHhcCh-hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 110 1348999999999999999 6777788999999999999999999999999999988766553
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=1.2e-06 Score=65.08 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD---FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
|.+++..|.++-..|+.. +++..|+++++..++. ..++..+|..+..+
T Consensus 1 ~~~~~~~A~a~d~~G~~~----------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L------------------- 51 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE----------EAIPLYRRALAAGLSGADRRRALIQLASTLRNL------------------- 51 (120)
T ss_pred CchHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-------------------
Confidence 357788999998888876 5789999999986665 46788888887764
Q ss_pred CCcHHHHHHHHHHHHhhCCCC---cHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 190 EPTAEDAIANCLKAEELAPAP---WKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
|++++|+..+++++.-.| + +......++.++...|+.++|++++-.++.
T Consensus 52 -G~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 52 -GRYDEALALLEEALEEFP-DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -CCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988 5 566778899999999999999999988875
No 150
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.62 E-value=3.2e-08 Score=67.72 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC---CCC---cHHhHHHHHHHHHHhCC
Q psy9159 154 PKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA---PAP---WKENQLLIAKCYIEAGE 227 (259)
Q Consensus 154 P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~---P~~---~~~~~~~la~~~~~~g~ 227 (259)
|+-+.++..+|.+|... |++++|+++|++|+++. +++ ....+.++|.++..+|+
T Consensus 2 ~~~a~~~~~la~~~~~~--------------------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYREL--------------------GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 44567889999998875 88999999999999762 212 24568999999999999
Q ss_pred HHHHHHHHHHHhcC
Q psy9159 228 YAKAVQWLDKAKAI 241 (259)
Q Consensus 228 ~~eA~~~~~kal~l 241 (259)
+++|++++++++++
T Consensus 62 ~~~A~~~~~~al~i 75 (78)
T PF13424_consen 62 YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 151
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.62 E-value=3.1e-07 Score=61.81 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=58.8
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la 120 (259)
.. +++++|++.+++++..+|+++..++..|.++..+|++. +|.+.++++++..|+++.+....+
T Consensus 7 ~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--------------~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 7 QQ-EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--------------EALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hC-CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--------------HHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56 99999999999999999999999999999999999876 999999999999999988765443
No 152
>KOG1130|consensus
Probab=98.61 E-value=9e-08 Score=83.47 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=110.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHhhchhcc-------------c-------
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP----DVLYRLAKACHCLYDIKRR-------------E------- 85 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~~-------------~------- 85 (259)
++..++.++. .. |+++..+++|+.+++..-++- .||..||.+|+.++++.+. -
T Consensus 19 eLalEGERLc--k~-gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 19 ELALEGERLC--KM-GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHH--hc-cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 3567888999 67 999999999999999877663 4566677777777766531 0
Q ss_pred ------CcHHHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhhchhhH---HHH-------HhcHHHHH
Q psy9159 86 ------NDKEASEKYILQGIEYAKKAMELAPN------NSNTQKWYGICVGANGQFQSL---KEK-------IKCGVVFR 143 (259)
Q Consensus 86 ------~~~~~~~~~~~~A~~~~~kal~~~P~------~~~~~~~la~~~~~~~~~~~~---~~~-------~~~~~~a~ 143 (259)
++.-.-++.|++|+..+.+-|.+..+ ...+++++|.++...|.-.+. .++ ......|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 11224467789999999888765433 456788888888877643221 111 01111233
Q ss_pred HHHHHHHccCCCCh------hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC-----cH
Q psy9159 144 DQMNKAIQMAPKDF------TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP-----WK 212 (259)
Q Consensus 144 ~~~~kAl~l~P~~~------~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~-----~~ 212 (259)
+.|..-|++-.... .++-+||..|+- .|+|+.||.+.+.-+.+.... .-
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl--------------------LGdf~~ai~~H~~RL~ia~efGDrAaeR 235 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL--------------------LGDFDQAIHFHKLRLEIAQEFGDRAAER 235 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeee--------------------eccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444322211 122223332222 366666666666555553211 12
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
+++.+||+|++.+|+++.|++.|++++.+
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 34566666666666666666666665443
No 153
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=8.5e-07 Score=76.18 Aligned_cols=155 Identities=13% Similarity=0.029 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQP--NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC 122 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~ 122 (259)
++-++++..+++.+.... .++-+....|.++...|++ ++|+..+.+. ++.++......+
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~--------------~~AL~~l~~~-----~~lE~~al~Vqi 140 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY--------------EEALKLLHKG-----GSLELLALAVQI 140 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH--------------HHHHCCCTTT-----TCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH--------------HHHHHHHHcc-----CcccHHHHHHHH
Confidence 345555555555443321 2333333344444444443 4777666554 566666666666
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK 202 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k 202 (259)
+-..++++ .|.+.+++.-+++.+...+...-+.+.+..|. +++.+|...|+.
T Consensus 141 ~L~~~R~d----------lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------------e~~~~A~y~f~E 192 (290)
T PF04733_consen 141 LLKMNRPD----------LAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------------EKYQDAFYIFEE 192 (290)
T ss_dssp HHHTT-HH----------HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------------TCCCHHHHHHHH
T ss_pred HHHcCCHH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHH
Confidence 66666655 45677788888887766555555544444332 579999999999
Q ss_pred HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 203 Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
..+..| .++.....+|.|++.+|++++|.+.+.++++.+|.+++
T Consensus 193 l~~~~~-~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 193 LSDKFG-STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHhccC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 887766 67788889999999999999999999999999988764
No 154
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=3.8e-07 Score=81.14 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=64.6
Q ss_pred HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH---HHHHHHHHHHhhccchHHHHHHHH
Q psy9159 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL---YSLKGRYQYEISKLSFFERKIAVL 183 (259)
Q Consensus 107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~---~~~lG~~~~~~~~~~~~~~~~~~~ 183 (259)
+.+|+++++|.++|.++...|+++ +|...+++||+++|+++.+ |+++|.+|..+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGrye----------EAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L------------- 125 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVK----------DALAQFETALELNPNPDEAQAAYYNKACCHAYR------------- 125 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-------------
Confidence 468999999999999999999988 5779999999999999965 99999988774
Q ss_pred HhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 184 IVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 184 ~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
|++++|+.++++|+++.
T Consensus 126 -------Gr~dEAla~LrrALels 142 (453)
T PLN03098 126 -------EEGKKAADCLRTALRDY 142 (453)
T ss_pred -------CCHHHHHHHHHHHHHhc
Confidence 88999999999999984
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.53 E-value=2e-05 Score=62.36 Aligned_cols=155 Identities=25% Similarity=0.243 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHH-HHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC---ChHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAK-ACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN---NSNTQKWYG 120 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~-~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~---~~~~~~~la 120 (259)
+++.+++..+..++...+.+.......+. ++...|+.. .|...+++++..+|. ........+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYE--------------EALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 78999999999999988887655556666 777777765 999999999998873 333333333
Q ss_pred HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159 121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~ 199 (259)
..+...++.. .+...+.+++...|. ....+..+|..+... ++++.|+..
T Consensus 175 ~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~a~~~ 224 (291)
T COG0457 175 ALLEALGRYE----------EALELLEKALKLNPDDDAEALLNLGLLYLKL--------------------GKYEEALEY 224 (291)
T ss_pred hHHHHhcCHH----------HHHHHHHHHHhhCcccchHHHHHhhHHHHHc--------------------ccHHHHHHH
Confidence 3323333333 567899999999999 688999999887764 678999999
Q ss_pred HHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 200 CLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 200 ~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
+.+++...| .....+..++..+...++++++...+.+++...|.
T Consensus 225 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 225 YEKALELDP-DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCc-ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999 55667888888888778899999999999999886
No 156
>KOG2610|consensus
Probab=98.51 E-value=4e-06 Score=71.66 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=123.6
Q ss_pred HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-CCCC
Q psy9159 34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-APNN 112 (259)
Q Consensus 34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~P~~ 112 (259)
.+..++ +. |++.+|.....+.++..|.+--++-.--.+++.+|+.. .-+..++|.+-. +|+-
T Consensus 109 ~aai~~--~~-g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~--------------~~k~ai~kIip~wn~dl 171 (491)
T KOG2610|consen 109 KAAILW--GR-GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQI--------------GKKNAIEKIIPKWNADL 171 (491)
T ss_pred hHHHhh--cc-ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchh--------------hhhhHHHHhccccCCCC
Confidence 344555 66 99999999999999999999988888889999999875 566778888877 7776
Q ss_pred h---HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 113 S---NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 113 ~---~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
| -.+--++..+...|.+. +|.+..++++++||.+..+.+.++.++...
T Consensus 172 p~~sYv~GmyaFgL~E~g~y~----------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~------------------- 222 (491)
T KOG2610|consen 172 PCYSYVHGMYAFGLEECGIYD----------DAEKQADRALQINRFDCWASHAKAHVLEMN------------------- 222 (491)
T ss_pred cHHHHHHHHHHhhHHHhccch----------hHHHHHHhhccCCCcchHHHHHHHHHHHhc-------------------
Confidence 4 33334555555666665 456777999999999999999999988653
Q ss_pred CCcHHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 190 EPTAEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
|++.|+.++..+.-......+ ..+|-.-|.+++.-+.++.|++.|++-+
T Consensus 223 -~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 223 -GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 789999999888766544222 2246667899999999999999998754
No 157
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.50 E-value=1.9e-05 Score=78.82 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHHHhh--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 190 EPTAEDAIANCLKAEEL--APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|++++|++.|++..+. .| +...|..+-.++...|++++|.+.+.+.++..
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 36666666666655443 34 24455555566666666666666666665543
No 158
>KOG4340|consensus
Probab=98.49 E-value=4.6e-06 Score=70.31 Aligned_cols=169 Identities=15% Similarity=0.044 Sum_probs=122.6
Q ss_pred HHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH
Q psy9159 36 DRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT 115 (259)
Q Consensus 36 ~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~ 115 (259)
-.++ .. .+|..||..+..-.+..|.+-..+..||.+|+...++. .|.+.|++.-.+.|.....
T Consensus 18 y~lI--~d-~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~--------------~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 18 YRLI--RD-ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA--------------LAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHH--HH-hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhChHHHHH
Confidence 3456 56 89999999999999999999999999999999877654 9999999999999998888
Q ss_pred HHHHHHHHHHhhchhhHHHHHhcHHHHHHHH------HHHHc--------------cCC--CChhHHHHHHHHHHHhhcc
Q psy9159 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQM------NKAIQ--------------MAP--KDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~------~kAl~--------------l~P--~~~~~~~~lG~~~~~~~~~ 173 (259)
....+..+...+.+..+..-.....+-.... +-||+ .-| +.+......|-+.++
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk---- 156 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK---- 156 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----
Confidence 7778888777776654432211110000111 12221 112 222333333322222
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|+|++|++-|+.|++... ..+-.-+++|.|+...|+++.|+++....++..
T Consensus 157 ----------------egqyEaAvqkFqaAlqvsG-yqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 157 ----------------EGQYEAAVQKFQAALQVSG-YQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred ----------------cccHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 5999999999999999998 777788899999999999999999887776643
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.48 E-value=3.8e-06 Score=62.44 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhchhhHHHHHhcHHH
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---SNTQKWYGICVGANGQFQSLKEKIKCGVV 141 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---~~~~~~la~~~~~~~~~~~~~~~~~~~~~ 141 (259)
|.++|.+|.++..+|+.. +|+..|+++++..++. ..++..+|.++..+|+++ +
T Consensus 1 ~~~~~~~A~a~d~~G~~~--------------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d----------e 56 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE--------------EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD----------E 56 (120)
T ss_pred CchHHHHHHHHHhcCCHH--------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH----------H
Confidence 467899999999999875 9999999999986555 457778899999999887 5
Q ss_pred HHHHHHHHHccCCC---ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Q psy9159 142 FRDQMNKAIQMAPK---DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE 205 (259)
Q Consensus 142 a~~~~~kAl~l~P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~ 205 (259)
+...+++++.-.|+ +......++..+... |+.++|++.+..++.
T Consensus 57 A~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~--------------------gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 57 ALALLEEALEEFPDDELNAALRVFLALALYNL--------------------GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHCCCccccHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHH
Confidence 67888999999898 777777777776664 889999999988876
No 160
>KOG2376|consensus
Probab=98.48 E-value=1.4e-05 Score=72.61 Aligned_cols=199 Identities=11% Similarity=-0.018 Sum_probs=121.5
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-------cC----c-H-------HHH
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-------EN----D-K-------EAS 91 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-------~~----~-~-------~~~ 91 (259)
.+-+..... .+ |+|++|.....+++...|++++++..--.+..+.+.+.+. .. . . .-+
T Consensus 15 l~t~ln~~~--~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHG--KN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhc--cc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 344444444 45 9999999999999999999999998887777777776521 00 0 0 123
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH---H
Q psy9159 92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ---Y 168 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~---~ 168 (259)
++..++|+..++ ..++.+.......|.++.++++|. ++...|+..++-+-++.......+..- .
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd----------ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD----------EALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH----------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 344455555555 445555555556666666666665 445666776666655554433322110 0
Q ss_pred Hhh-------cc--chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh-----C-CCCc--------HHhHHHHHHHHHHh
Q psy9159 169 EIS-------KL--SFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL-----A-PAPW--------KENQLLIAKCYIEA 225 (259)
Q Consensus 169 ~~~-------~~--~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l-----~-P~~~--------~~~~~~la~~~~~~ 225 (259)
... .. ..++..+..++ -....|+|.+|++.+++|+.+ . .+.+ ..+...|+.++..+
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac-~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTAC-ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 000 00 01111111110 011259999999999999332 1 1011 23578899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCc
Q psy9159 226 GEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 226 g~~~eA~~~~~kal~l~p~~~ 246 (259)
|+.++|...|...+..+|.|.
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCc
Confidence 999999999999999887665
No 161
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=1.3e-05 Score=64.67 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcc---CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhc
Q psy9159 4 KLFVLSLFQFAFVQFGECAELFAVN---NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYD 80 (259)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 80 (259)
|+|...+.+...+...+|++.-.+. ++.+ +..+. .+ =+.+=-+..+.+++....-.++. .|..++..|.
T Consensus 2 k~f~~~~~~~~~~~LagC~~~~~~~~~k~~~~--~~~~q--p~-lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGv 73 (297)
T COG4785 2 KPFLRWCFVATALTLAGCSNQNETFWRKSEVL--AVPLQ--PT-LQQEVILARMSQILASRALTDEE---RAQLLFERGV 73 (297)
T ss_pred cchHHHHHHHHHHHHHhhccccCceeccccee--eccCC--cc-HHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcc
Confidence 3455556666677778887743221 1111 11111 11 11122233344444332222221 3344444454
Q ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHH
Q psy9159 81 IKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160 (259)
Q Consensus 81 ~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~ 160 (259)
.. ++++...-|+--+.+++++.|+-++++..+|.-+...|++.. +.+.++..+++||+.--++
T Consensus 74 lY-------DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fda----------a~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 74 LY-------DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA----------AYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred hh-------hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchH----------HHHHhhhHhccCCcchHHH
Confidence 43 445556688889999999999999999999999999999984 4578899999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc
Q psy9159 161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW 211 (259)
Q Consensus 161 ~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~ 211 (259)
.+.|..++-. |++.-|.+-+.+-.+-||++.
T Consensus 137 lNRgi~~YY~--------------------gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 137 LNRGIALYYG--------------------GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hccceeeeec--------------------CchHhhHHHHHHHHhcCCCCh
Confidence 9998754432 889999999999999888443
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.45 E-value=1.9e-07 Score=53.24 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHH
Q psy9159 199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQ 233 (259)
Q Consensus 199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~ 233 (259)
+|++||+++| +++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNP-NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999 789999999999999999999973
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=4.7e-06 Score=71.42 Aligned_cols=182 Identities=15% Similarity=0.043 Sum_probs=108.9
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
+.+.++...|+ .. +++++|.+.|.++....-+.-+ .+..|.+|...+... +....++|+..+++|+.+.
T Consensus 36 ~~y~~Aa~~fk-~~-~~~~~A~~ay~kAa~~~~~~~~-~~~Aa~~~~~Aa~~~--------k~~~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 36 DLYEKAANCFK-LA-KDWEKAAEAYEKAADCYEKLGD-KFEAAKAYEEAANCY--------KKGDPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHH-HT-T-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH--------HHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HH-hccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH--------HhhCHHHHHHHHHHHHHHH
Confidence 45667777774 44 8888888888887553321111 123444544444432 1124457777888777663
Q ss_pred --CCCh----HHHHHHHHHHHHh-hchhhHHHHHhcHHHHHHHHHHHHccCCCCh------hHHHHHHHHHHHhhccchH
Q psy9159 110 --PNNS----NTQKWYGICVGAN-GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------TLYSLKGRYQYEISKLSFF 176 (259)
Q Consensus 110 --P~~~----~~~~~la~~~~~~-~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~~~~~lG~~~~~~~~~~~~ 176 (259)
-+++ .++..+|.++... +++ ..+.++|++|+++-.... ..+..+|.++.+
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~----------e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~------- 167 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDY----------EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR------- 167 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--H----------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-------
Confidence 2222 2233334444333 333 367788888887633322 234445555544
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC--C---cH-HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159 177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--P---WK-ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD 250 (259)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~--~---~~-~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~ 250 (259)
.|+|++|++.|++.....-+ . .. ..++..+.|+...|+...|.+.+++..+.+|......+
T Consensus 168 -------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 168 -------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp -------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred -------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 38899999999999875320 1 11 23567888999999999999999999999998777655
Q ss_pred hh
Q psy9159 251 LS 252 (259)
Q Consensus 251 ~~ 252 (259)
..
T Consensus 235 ~~ 236 (282)
T PF14938_consen 235 YK 236 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=7.3e-05 Score=59.13 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-LAPNNSNTQKWYGICV 123 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~~~~~~~~la~~~ 123 (259)
..+.||-+. +..-|. +.-.++||.+...+|++. +|...|++++. +--+++.....++..+
T Consensus 74 R~~Rea~~~----~~~ApT-vqnr~rLa~al~elGr~~--------------EA~~hy~qalsG~fA~d~a~lLglA~Aq 134 (251)
T COG4700 74 RHLREATEE----LAIAPT-VQNRYRLANALAELGRYH--------------EAVPHYQQALSGIFAHDAAMLLGLAQAQ 134 (251)
T ss_pred HHHHHHHHH----Hhhchh-HHHHHHHHHHHHHhhhhh--------------hhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 344444444 444454 456789999999999986 99999999884 5567777776777777
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
...+++. .+...+++..+-+|. .+.....+|+.+.. .|++++|...|+
T Consensus 135 fa~~~~A----------~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa--------------------~g~~a~Aesafe 184 (251)
T COG4700 135 FAIQEFA----------AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA--------------------QGKYADAESAFE 184 (251)
T ss_pred HhhccHH----------HHHHHHHHHhhcCCccCCCCchHHHHHHHHh--------------------cCCchhHHHHHH
Confidence 7777665 456788898999987 56777888888765 388999999999
Q ss_pred HHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHH----HHHHhcCCCC
Q psy9159 202 KAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW----LDKAKAIPVV 244 (259)
Q Consensus 202 kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~----~~kal~l~p~ 244 (259)
-+++.-| + +.+....+..+.++|+..+|..- .+.+....|+
T Consensus 185 ~a~~~yp-g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 185 VAISYYP-G-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHHhCC-C-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 9999999 4 67778889999999988877554 4445555544
No 165
>KOG4234|consensus
Probab=98.39 E-value=5.9e-06 Score=65.87 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=86.7
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
..+-.+++.+| .+ |+|++|.+-|.+++..-|..++- ..+.+|...+-.. -+++..+.|+..|.+||++
T Consensus 96 d~lK~EGN~~F--~n-gdyeeA~skY~~Ale~cp~~~~e--~rsIly~Nraaa~-------iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 96 DSLKKEGNELF--KN-GDYEEANSKYQEALESCPSTSTE--ERSILYSNRAAAL-------IKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHHHHHhh--hc-ccHHHHHHHHHHHHHhCccccHH--HHHHHHhhhHHHH-------HHhhhHHHHHHHHHhhHhc
Confidence 34567788888 78 99999999999999999987652 2233333222111 2344456999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR 165 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~ 165 (259)
+|.+..++...+.++.....++ .+++.|++.++++|....+--...+
T Consensus 164 ~pty~kAl~RRAeayek~ek~e----------ealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYE----------EALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999888888888776665 5678999999999998876655554
No 166
>KOG4234|consensus
Probab=98.38 E-value=2.3e-06 Score=68.19 Aligned_cols=98 Identities=24% Similarity=0.296 Sum_probs=77.0
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-----HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-----LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-----~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 194 (259)
|.-+...|+++ .|..-|..||++-|.-+. .|.+.|.+..+ +++.+
T Consensus 102 GN~~F~ngdye----------eA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK--------------------l~k~e 151 (271)
T KOG4234|consen 102 GNELFKNGDYE----------EANSKYQEALESCPSTSTEERSILYSNRAAALIK--------------------LRKWE 151 (271)
T ss_pred HHHhhhcccHH----------HHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH--------------------hhhHH
Confidence 33445566665 456788999999998664 22333333332 37899
Q ss_pred HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
.||+...|||+++| .+..+...+|.+|.++.++++|++.|++.++++|...+.
T Consensus 152 ~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 152 SAIEDCSKAIELNP-TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999 678888999999999999999999999999999987643
No 167
>KOG4648|consensus
Probab=98.38 E-value=1e-06 Score=75.34 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=88.1
Q ss_pred HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159 119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198 (259)
Q Consensus 119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~ 198 (259)
-|.-+...|.|+ +|+++|.+++.++|-|+..+.+.+..|++. .+|..|..
T Consensus 103 ~GN~yFKQgKy~----------EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------------------K~FA~AE~ 152 (536)
T KOG4648|consen 103 RGNTYFKQGKYE----------EAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------------------KSFAQAEE 152 (536)
T ss_pred hhhhhhhccchh----------HHHHHhhhhhccCCCCccchhhHHHHHHHH--------------------HHHHHHHH
Confidence 344455555555 678999999999999999999999999986 56889999
Q ss_pred HHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159 199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD 250 (259)
Q Consensus 199 ~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~ 250 (259)
-+..|+.+|. .+..+|..+|.+...+|+..||.+.++.++++.|.+-|=+.
T Consensus 153 DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 153 DCEAAIALDK-LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence 9999999998 78899999999999999999999999999999999766443
No 168
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.6e-05 Score=63.07 Aligned_cols=167 Identities=17% Similarity=0.106 Sum_probs=111.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~ 123 (259)
.|-..-|.--+.+++.+.|+-|+++.-+|.-+...|+++ .|.+.+...+++||.+.-++.+.|+.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd--------------aa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD--------------AAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch--------------HHHHHhhhHhccCCcchHHHhccceee
Confidence 366677777899999999999999999999888888865 999999999999999999999999988
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhH--HHHHHH--------------HHHHhhccchHHHHHHHHHhcC
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL--YSLKGR--------------YQYEISKLSFFERKIAVLIVSD 187 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~--~~~lG~--------------~~~~~~~~~~~~~~~~~~~~~~ 187 (259)
...|.+.- |.+.+.+--+-||++|-= |.-+-. -+....+-.|=- .+...+
T Consensus 144 YY~gR~~L----------Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~-~iV~~y--- 209 (297)
T COG4785 144 YYGGRYKL----------AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGW-NIVEFY--- 209 (297)
T ss_pred eecCchHh----------hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhH-HHHHHH---
Confidence 88888763 344455555667777632 211110 000000000000 000011
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCc-------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPW-------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~-------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|+..+ ...++++.+-.. ++ .+.+++||.-+...|+.++|...|+-|+.-+
T Consensus 210 --LgkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 210 --LGKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred --HhhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 133322 223344433332 22 4569999999999999999999999987644
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.35 E-value=2e-05 Score=75.94 Aligned_cols=168 Identities=13% Similarity=0.005 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--APNNSNTQKWYGIC 122 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P~~~~~~~~la~~ 122 (259)
|+.++|...|+++.+ .|...|..+...|...|+. ++|++.+++..+. .|+. ..+..+-..
T Consensus 374 G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~--------------~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a 435 (697)
T PLN03081 374 GRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG--------------TKAVEMFERMIAEGVAPNH-VTFLAVLSA 435 (697)
T ss_pred CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH--------------HHHHHHHHHHHHhCCCCCH-HHHHHHHHH
Confidence 556666666555543 2334555555555555554 3666666665543 3432 223333333
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHc---cCCCChhHHHHHHHHHHHhhccchHHHHHHHH------------HhcC
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQ---MAPKDFTLYSLKGRYQYEISKLSFFERKIAVL------------IVSD 187 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~---l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~------------~~~~ 187 (259)
+...|..+ ++.+.++...+ +.|+- ..|..+...+.+.|.++...+.+... +.+.
T Consensus 436 ~~~~g~~~----------~a~~~f~~m~~~~g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 436 CRYSGLSE----------QGWEIFQSMSENHRIKPRA-MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred HhcCCcHH----------HHHHHHHHHHHhcCCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 44444443 33445554443 23332 34555555555555544333222210 0001
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
...|+++.|...+++.++++| ++...|..|..+|...|++++|.+.+++..+..
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 124889999999999999999 667788899999999999999999998876553
No 170
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.34 E-value=8.6e-05 Score=74.16 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=96.2
Q ss_pred CCcCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhhchhcc--------------cCcHH---------HHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRR--------------ENDKE---------ASEKYIL 96 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~~--------------~~~~~---------~~~~~~~ 96 (259)
.. |++++|+.+|.++... .|+ ..+|..+..+|...|+..+. ..+.. -+.+.++
T Consensus 519 k~-G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 519 RA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HC-cCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 44 7777777777777543 343 56667777777777665410 00000 0111223
Q ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHHhhcc
Q psy9159 97 QGIEYAKKAMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM--APKDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 97 ~A~~~~~kal~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l--~P~~~~~~~~lG~~~~~~~~~ 173 (259)
+|.+.+++..+.+ +.+...|..+...+.+.|++. +|.+.+++..+. .|+ ...|..+...|.+.++.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d----------eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD----------FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence 4445554444443 223334444444444444433 233444444332 444 34455555555554443
Q ss_pred chHHHHHHHHHh---------------cCCCCCcHHHHHHHHHHHHhh--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159 174 SFFERKIAVLIV---------------SDLDEPTAEDAIANCLKAEEL--APAPWKENQLLIAKCYIEAGEYAKAVQWLD 236 (259)
Q Consensus 174 ~~~~~~~~~~~~---------------~~~~~g~~~eAi~~~~kAi~l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 236 (259)
+...+.+..+.. .....|++++|++.|++..+. .| +...|..|...|.+.|++++|.+.++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 322221111110 011257788888888877653 45 35667888888888888888888888
Q ss_pred HHhcC
Q psy9159 237 KAKAI 241 (259)
Q Consensus 237 kal~l 241 (259)
+..+.
T Consensus 744 eM~~~ 748 (1060)
T PLN03218 744 EMKRL 748 (1060)
T ss_pred HHHHc
Confidence 76543
No 171
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.32 E-value=0.00066 Score=59.36 Aligned_cols=196 Identities=14% Similarity=0.081 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cCcHH-----------HHHHHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------ENDKE-----------ASEKYILQGIEYA 102 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~~~~-----------~~~~~~~~A~~~~ 102 (259)
.|+|.+|.....+.-+..+.-.-.+..-+.+..++|+.... +++.. -..+.++.|++-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 39999999999998887777777777778888888886521 11110 0112346666666
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHH---HHHHH--------------
Q psy9159 103 KKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY---SLKGR-------------- 165 (259)
Q Consensus 103 ~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~---~~lG~-------------- 165 (259)
.++++..|.++.+......++...|++.... .....+.|+-.+++....-+ ...|.
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll-------~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALL-------AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHH-------HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 6666666666666666666666666554221 22344444433333211110 00000
Q ss_pred -H---------------------HHHhhccchHHHHHH-----------HHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH
Q psy9159 166 -Y---------------------QYEISKLSFFERKIA-----------VLIVSDLDEPTAEDAIANCLKAEELAPAPWK 212 (259)
Q Consensus 166 -~---------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~ 212 (259)
| +.++++.+...+-+. ..+++.-+.++.+.=++..++.+...| +.+
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p 328 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDP 328 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC-CCh
Confidence 0 000111100000000 123333345778888888899999999 678
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
..++.||..+.+.+.+.+|.++++.|+...|...+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 88999999999999999999999999999877544
No 172
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.32 E-value=4.3e-05 Score=73.61 Aligned_cols=173 Identities=6% Similarity=-0.095 Sum_probs=100.9
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CCCChHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--APNNSNTQKWY 119 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P~~~~~~~~l 119 (259)
.. |++++|...|++.. +.++..|..+...|...|+.. +|++.+++.... .|+ ...+..+
T Consensus 271 k~-g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~--------------eA~~lf~~M~~~g~~pd-~~t~~~l 331 (697)
T PLN03081 271 KC-GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSE--------------EALCLYYEMRDSGVSID-QFTFSIM 331 (697)
T ss_pred HC-CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHH--------------HHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 45 88888888888764 356778888888888888765 555555555432 232 2334444
Q ss_pred HHHHHHhhchhhHHHHH-------------------------hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159 120 GICVGANGQFQSLKEKI-------------------------KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~-------------------------~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~ 174 (259)
..++...|.++.+.+-. +....|.+.+++..+ | |...|..+...|.+.++..
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHH
Confidence 44444444443222110 111234455554432 3 4566777776676665543
Q ss_pred hHHHHHHHH---------------HhcCCCCCcHHHHHHHHHHHHh---hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159 175 FFERKIAVL---------------IVSDLDEPTAEDAIANCLKAEE---LAPAPWKENQLLIAKCYIEAGEYAKAVQWLD 236 (259)
Q Consensus 175 ~~~~~~~~~---------------~~~~~~~g~~~eAi~~~~kAi~---l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ 236 (259)
...+.+... +.+....|..++|.+.|+...+ +.| +...|.-+..+|.+.|++++|.+.++
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHH
Confidence 322222211 1112236888888888888865 345 24567778888888888888888877
Q ss_pred HH
Q psy9159 237 KA 238 (259)
Q Consensus 237 ka 238 (259)
+.
T Consensus 487 ~~ 488 (697)
T PLN03081 487 RA 488 (697)
T ss_pred HC
Confidence 64
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=8.7e-06 Score=61.79 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=84.6
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka 105 (259)
.+++.++...+ .+ |+|++|+..|+.+....|-+ ..+-..++.+|+..+++. +|+..+++-
T Consensus 11 ~~ly~~a~~~l--~~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~--------------~A~a~~~rF 73 (142)
T PF13512_consen 11 QELYQEAQEAL--QK-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYE--------------EAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHH--Hh-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHH--------------HHHHHHHHH
Confidence 46788899998 67 99999999999999987754 678888999999988875 999999999
Q ss_pred HHhCCCChHH---HHHHHHHHHHhhc--hh---hHHHHHhcHHHHHHHHHHHHccCCCChhH
Q psy9159 106 MELAPNNSNT---QKWYGICVGANGQ--FQ---SLKEKIKCGVVFRDQMNKAIQMAPKDFTL 159 (259)
Q Consensus 106 l~~~P~~~~~---~~~la~~~~~~~~--~~---~~~~~~~~~~~a~~~~~kAl~l~P~~~~~ 159 (259)
|+++|+++.+ ++..|.+...... +. +..........|...+++.|+.-|++.-+
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999876 3334444443322 00 11111222446778888999999987643
No 174
>KOG4642|consensus
Probab=98.28 E-value=3.5e-06 Score=68.74 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
-+.+..|+..|.++|.++|+.+..+.+-+.++..+.+++ .....-.+|++++||...+++.+|.|..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~----------~v~~dcrralql~~N~vk~h~flg~~~l~s- 91 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE----------PVEEDCRRALQLDPNLVKAHYFLGQWLLQS- 91 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh----------hhhhhHHHHHhcChHHHHHHHHHHHHHHhh-
Confidence 345679999999999999999999999999998887776 345677999999999999999999999875
Q ss_pred ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
..|.+||.++++|.++
T Consensus 92 -------------------~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 -------------------KGYDEAIKVLQRAYSL 107 (284)
T ss_pred -------------------ccccHHHHHHHHHHHH
Confidence 6689999999999776
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.27 E-value=6.3e-07 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 146 MNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 146 ~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
|+|||+++|+|+.+|+.||.++...
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999999875
No 176
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=2.3e-06 Score=51.81 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
|+++..+|.+|...|+.. +|+..++++++.+|+|+.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~--------------~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPD--------------EAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 478899999999999975 9999999999999999999988775
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.24 E-value=2.2e-05 Score=65.51 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT 192 (259)
Q Consensus 116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 192 (259)
.+..|.-+...|++. .|...|..-|+.-|++. +++|+||..++.+ |+
T Consensus 144 ~Y~~A~~~~ksgdy~----------~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q--------------------g~ 193 (262)
T COG1729 144 LYNAALDLYKSGDYA----------EAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ--------------------GD 193 (262)
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc--------------------cc
Confidence 455666666666665 45677788888888854 8999999999885 88
Q ss_pred HHHHHHHHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159 193 AEDAIANCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD 250 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~ 250 (259)
|++|...|..+++-.| +. +++++-||.|+..+|+.++|...|+++++--|+++-.+.
T Consensus 194 y~~Aa~~f~~~~k~~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 194 YEDAAYIFARVVKDYP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred chHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999988 44 467999999999999999999999999999999876543
No 178
>PLN03077 Protein ECB2; Provisional
Probab=98.23 E-value=8.5e-05 Score=73.27 Aligned_cols=166 Identities=13% Similarity=0.035 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME--LAPNNSNTQKWYGIC 122 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~--~~P~~~~~~~~la~~ 122 (259)
|+.++|...|++. +.+...|..+...|...|+.. +|++.+++..+ +.|+... +..+-..
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~--------------~A~~lf~~M~~~g~~Pd~~T-~~~ll~a 598 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS--------------MAVELFNRMVESGVNPDEVT-FISLLCA 598 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH--------------HHHHHHHHHHHcCCCCCccc-HHHHHHH
Confidence 8888888888876 456778888888888888764 67777776655 3454433 2222233
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHH---ccCCCChhHHHHHHHHHHHhhccchHHHHHHHH------------HhcC
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAI---QMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL------------IVSD 187 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl---~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~------------~~~~ 187 (259)
+...|..+ ++.+.++... .+.|+- ..|..+...+.+.|+++...+.+... +.+.
T Consensus 599 ~~~~g~v~----------ea~~~f~~M~~~~gi~P~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 599 CSRSGMVT----------QGLEYFHSMEEKYSITPNL-KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred HhhcChHH----------HHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 44444443 2334444433 233332 44555555555554443322222110 0000
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
...|+.+.+....++.++++| ++...|..|+++|...|++++|.+..+.-.+.
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p-~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDP-NSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCC-CCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 013778888888888999999 67788888899999999999998888776553
No 179
>PLN03077 Protein ECB2; Provisional
Probab=98.20 E-value=0.0001 Score=72.76 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNK--QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL---APNNSNTQKW 118 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~---~P~~~~~~~~ 118 (259)
.|+.++|+++|+++.+. .|+... +..+-.+|...|... +|..+++...+. .|+ ...+..
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~--------------ea~~~f~~M~~~~gi~P~-~~~y~~ 630 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVT--------------QGLEYFHSMEEKYSITPN-LKHYAC 630 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHH--------------HHHHHHHHHHHHhCCCCc-hHHHHH
Confidence 39999999999998773 576654 444555677777654 777777766643 332 244555
Q ss_pred HHHHHHHhhchhhHHHHHhcH----------------------HHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159 119 YGICVGANGQFQSLKEKIKCG----------------------VVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF 176 (259)
Q Consensus 119 la~~~~~~~~~~~~~~~~~~~----------------------~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~ 176 (259)
+..++++.|+.+.+.+.++.. ..+....+++++++|+++..|..++.+|...
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~------ 704 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA------ 704 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC------
Confidence 666667777666554433221 2334567788999999999999999988764
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 177 ERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
|++++|.+..+...+.
T Consensus 705 --------------g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 705 --------------GKWDEVARVRKTMREN 720 (857)
T ss_pred --------------CChHHHHHHHHHHHHc
Confidence 8899999999888765
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.17 E-value=5.3e-06 Score=50.16 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 157 ~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
|.+|..+|.+|... |++++|++.|+++++.+| +++.+|..||.
T Consensus 1 p~~~~~la~~~~~~--------------------G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRL--------------------GQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 46788999988875 889999999999999999 78999998885
No 181
>KOG1915|consensus
Probab=98.16 E-value=0.00035 Score=62.49 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=131.9
Q ss_pred CCHHHHHH-----HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159 45 DDKAKAYN-----LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119 (259)
Q Consensus 45 ~~~~~A~~-----~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l 119 (259)
.-.++++. .|+..+..+|-|-+.|+-.-+.-...|+.. .-.+.|++||.--|...+--+|-
T Consensus 297 ~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~--------------~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 297 EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD--------------RIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH--------------HHHHHHHHHHccCCchhHHHHHH
Confidence 34555554 488899999999999987777766666543 77889999999988765543333
Q ss_pred HHHH--HHhhchhhHHHHHhcHHHHHHHHHHHHccCCC----ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC----
Q psy9159 120 GICV--GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD---- 189 (259)
Q Consensus 120 a~~~--~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---- 189 (259)
-.++ ....-++... ..+.....+.|+.+|++-|. .+..|.+.+.+..+..++....+.++.++--+|.
T Consensus 363 RYIYLWinYalyeEle--~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF 440 (677)
T KOG1915|consen 363 RYIYLWINYALYEELE--AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence 2222 2222232221 22334567889999999996 4456777776666655555555555544322221
Q ss_pred ---------CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 190 ---------EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 190 ---------~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.+.++.....|++-++-.| .+..+|...|..-..+|+.+.|...|.-|++.+..+.
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 5889999999999999999 7889999999999999999999999999999875443
No 182
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.12 E-value=4.6e-06 Score=47.15 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=30.4
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999975
No 183
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.11 E-value=3.5e-06 Score=47.83 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
+.+|+++|.+|..+|++++|++.|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999874
No 184
>KOG4642|consensus
Probab=98.10 E-value=7.3e-06 Score=66.92 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=80.4
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
.+-+++..+| .. .+|..|++.|.++|..+|..+..+-+.+.+++++.++. ....-+++|++++
T Consensus 12 qlkE~gnk~f--~~-k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--------------~v~~dcrralql~ 74 (284)
T KOG4642|consen 12 QLKEQGNKCF--IP-KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--------------PVEEDCRRALQLD 74 (284)
T ss_pred HHHhcccccc--ch-hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--------------hhhhhHHHHHhcC
Confidence 3456677888 56 89999999999999999999999999999999977764 8899999999999
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ 151 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~ 151 (259)
|+...+++.+|..+.....+.. ++..+.+|..
T Consensus 75 ~N~vk~h~flg~~~l~s~~~~e----------aI~~Lqra~s 106 (284)
T KOG4642|consen 75 PNLVKAHYFLGQWLLQSKGYDE----------AIKVLQRAYS 106 (284)
T ss_pred hHHHHHHHHHHHHHHhhccccH----------HHHHHHHHHH
Confidence 9999999999999888777763 4455566643
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.08 E-value=4.1e-05 Score=65.64 Aligned_cols=54 Identities=28% Similarity=0.283 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHHhhC-----CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 191 PTAEDAIANCLKAEELA-----PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~-----P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
|++++|+++|++|+++- |..-...+..+|.++..+|++++|++.|+++....-.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 78999999999999973 1111345788999999999999999999999876533
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=8.8e-05 Score=61.97 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND---PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME 107 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~ 107 (259)
.+..+-.++ .+ |+|.+|.+.|..-++.+|++ +.++|.||.+++.+|++. +|...|..++.
T Consensus 144 ~Y~~A~~~~--ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~--------------~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLY--KS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYE--------------DAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHH--Hc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccch--------------HHHHHHHHHHH
Confidence 467777777 67 99999999999999999987 688999999999999876 99999999999
Q ss_pred hCCCCh---HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159 108 LAPNNS---NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG 164 (259)
Q Consensus 108 ~~P~~~---~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG 164 (259)
-.|+++ ++++-+|.++..+++.+ +|+..|++.++--|+...+.....
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d----------~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTD----------EACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHCCCCHHHHHHHH
Confidence 888865 66888999999998876 678999999999999887765443
No 187
>KOG2796|consensus
Probab=98.04 E-value=0.00061 Score=56.77 Aligned_cols=132 Identities=8% Similarity=0.018 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhc
Q psy9159 96 LQGIEYAKKAMELA-PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISK 172 (259)
Q Consensus 96 ~~A~~~~~kal~~~-P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~ 172 (259)
.-....+.+.++.+ |..+.....+|.+..+.|+..+++.-.+..+ +.+=+++.- +..++.+.+.++.-
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve------k~~~kL~~~q~~~~V~~n~a~i~lg--- 264 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE------KVTQKLDGLQGKIMVLMNSAFLHLG--- 264 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH------HHHhhhhccchhHHHHhhhhhheec---
Confidence 36778888888888 5566556667777777777765432222111 111222221 11223333333221
Q ss_pred cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
++++.+|...|.+.+..|| .++.+-.+-|.|++-+|+..+|++-++.+++..|...-..-++
T Consensus 265 -----------------~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 265 -----------------QNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred -----------------ccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 3778999999999999999 7788888899999999999999999999999999877666554
Q ss_pred hh
Q psy9159 253 TT 254 (259)
Q Consensus 253 ~~ 254 (259)
+|
T Consensus 327 ~n 328 (366)
T KOG2796|consen 327 FN 328 (366)
T ss_pred HH
Confidence 44
No 188
>KOG1915|consensus
Probab=98.04 E-value=0.00028 Score=63.15 Aligned_cols=95 Identities=8% Similarity=0.021 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+++..|.+.+++++..+-.+...|...+.+-+..... .-|.....+|+.+=|.-...|+-+-.+-.
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v--------------NhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV--------------NHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH--------------hHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 7889999999999999999999998877766654443 38888889999999988887777777666
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG 164 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG 164 (259)
.+|+..++ .+.+++=++..|+. .+|...-
T Consensus 153 ~LgNi~ga----------RqiferW~~w~P~e-qaW~sfI 181 (677)
T KOG1915|consen 153 MLGNIAGA----------RQIFERWMEWEPDE-QAWLSFI 181 (677)
T ss_pred HhcccHHH----------HHHHHHHHcCCCcH-HHHHHHH
Confidence 77777653 46667777777764 4444433
No 189
>KOG3785|consensus
Probab=98.04 E-value=0.00029 Score=60.99 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159 97 QGIEYAKKAMELAPNNS-NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 97 ~A~~~~~kal~~~P~~~-~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~ 175 (259)
.|+..++-.+..+.+.- ..-.|+|.|+.++|++. +|...|+-+.+-+.-+...+..|+-+++-++.+..
T Consensus 40 GAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~----------~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 40 GAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE----------EALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH----------HHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 66666666665554433 56789999999999998 45567777777777777889999988877765433
Q ss_pred HHHHHH---------HHHhcC-CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 176 FERKIA---------VLIVSD-LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 176 ~~~~~~---------~~~~~~-~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
...... .++++. -..|+ ++-+.-|...++ +..+-.+.||.+....-.+++|++.|++++.-+|.
T Consensus 110 A~~~~~ka~k~pL~~RLlfhlahklnd-Ek~~~~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLCIRLLFHLAHKLND-EKRILTFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCc-HHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 332221 111111 01233 333445555544 33456788888888888999999999999988765
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.0002 Score=61.31 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK 172 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~ 172 (259)
+-.+.|+..|++|++..+....+|...|.+-...++... .|...|+++++..|.+..+|.....++...
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~---------~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-- 83 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPK---------RARKIFERGLKKFPSDPDFWLEYLDFLIKL-- 83 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HH---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHH---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--
Confidence 345799999999997777788888877777555443321 478999999999999999999998877664
Q ss_pred cchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH---HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 173 LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK---ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~---~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
|+.+.|...|++++..-| ... ..|......=...|+.+...+..+++.+.-|.+..-.
T Consensus 84 ------------------~d~~~aR~lfer~i~~l~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 84 ------------------NDINNARALFERAISSLP-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp ------------------T-HHHHHHHHHHHCCTSS-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred ------------------CcHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 779999999999999877 333 4677778888888999999999999999988866555
Q ss_pred hhhhhhcc
Q psy9159 250 DLSTTYSY 257 (259)
Q Consensus 250 ~~~~~~~~ 257 (259)
.....|++
T Consensus 145 ~f~~ry~~ 152 (280)
T PF05843_consen 145 LFSDRYSF 152 (280)
T ss_dssp HHHCCT-B
T ss_pred HHHHHhhc
Confidence 55555544
No 191
>KOG0376|consensus
Probab=98.00 E-value=1.1e-05 Score=71.96 Aligned_cols=113 Identities=20% Similarity=0.106 Sum_probs=96.8
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
++.-.+++.++ .. ..|+.|+.+|.++|+++|+++..+-+.+.++...+++. .|+.-+.+|+++
T Consensus 5 ~e~k~ean~~l--~~-~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--------------~Al~Da~kaie~ 67 (476)
T KOG0376|consen 5 EELKNEANEAL--KD-KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--------------GALHDALKAIEL 67 (476)
T ss_pred hhhhhHHhhhc--cc-chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--------------hHHHHHHhhhhc
Confidence 34557788888 66 99999999999999999999999888888888887765 999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY 168 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~ 168 (259)
+|....+++.-|.+...++.+. ++...|++...+.|+++.+.-.+-.+-.
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~----------~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFK----------KALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred CchhhheeeeccHHHHhHHHHH----------HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999888888877777665 5678889999999999988877776543
No 192
>KOG4555|consensus
Probab=98.00 E-value=0.00012 Score=54.57 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=80.4
Q ss_pred HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHH
Q psy9159 119 YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198 (259)
Q Consensus 119 la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~ 198 (259)
-|+.+...|+.. .+++.|.++|.+-|..+++|.+.+..+.- +|+.++|++
T Consensus 49 ~~valaE~g~Ld----------~AlE~F~qal~l~P~raSayNNRAQa~RL--------------------q~~~e~ALd 98 (175)
T KOG4555|consen 49 KAIALAEAGDLD----------GALELFGQALCLAPERASAYNNRAQALRL--------------------QGDDEEALD 98 (175)
T ss_pred HHHHHHhccchH----------HHHHHHHHHHHhcccchHhhccHHHHHHH--------------------cCChHHHHH
Confidence 355566666665 46788999999999999999999986643 488999999
Q ss_pred HHHHHHhhCCCCc---HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 199 NCLKAEELAPAPW---KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 199 ~~~kAi~l~P~~~---~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
-+.+|+++..... ..++...|.+|..+|+-+.|...|+.|.++.....
T Consensus 99 DLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 99 DLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 9999999975232 24589999999999999999999999998876544
No 193
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.96 E-value=0.0013 Score=60.41 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh--chhc
Q psy9159 6 FVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY--DIKR 83 (259)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~ 83 (259)
++.+-..|+++.+.-+-... ++.+.+.-.++ |=.|+-+.++..+.++.+. ++=-..+..+...-+... ...
T Consensus 168 ~~~sgv~~G~G~f~L~lSlL---Pp~~~kll~~v--GF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~- 240 (468)
T PF10300_consen 168 FFESGVYFGFGLFNLVLSLL---PPKVLKLLSFV--GFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFL- 240 (468)
T ss_pred HHHHhHHHHHHHHHHHHHhC---CHHHHHHHhhc--CcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHc-
Confidence 45555556666655554433 34555666666 5459999999999999772 222222222222211111 000
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC----ChhH
Q psy9159 84 RENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTL 159 (259)
Q Consensus 84 ~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~ 159 (259)
+.+......+.+.+.++...+..|+.+...+..|.+....|+.+ .|++.+++++..... +...
T Consensus 241 ---~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~----------~Ai~~~~~a~~~q~~~~Ql~~l~ 307 (468)
T PF10300_consen 241 ---GIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE----------EAIESFERAIESQSEWKQLHHLC 307 (468)
T ss_pred ---CCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH----------HHHHHHHHhccchhhHHhHHHHH
Confidence 00001223568999999999999999888888899998888887 456777777643322 2234
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh--HHHHHHHHHHhCCH-------HH
Q psy9159 160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN--QLLIAKCYIEAGEY-------AK 230 (259)
Q Consensus 160 ~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~--~~~la~~~~~~g~~-------~e 230 (259)
++.+|.++... .+|++|..+|.+.++.+. |+.+ .+..|.|+..+|+. ++
T Consensus 308 ~~El~w~~~~~--------------------~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~ 365 (468)
T PF10300_consen 308 YFELAWCHMFQ--------------------HDWEEAAEYFLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKE 365 (468)
T ss_pred HHHHHHHHHHH--------------------chHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence 55566555443 789999999999999875 5554 45578999999999 99
Q ss_pred HHHHHHHHhcCCC
Q psy9159 231 AVQWLDKAKAIPV 243 (259)
Q Consensus 231 A~~~~~kal~l~p 243 (259)
|.++++++-.+-.
T Consensus 366 a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 366 AEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998866544
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.94 E-value=0.0011 Score=58.54 Aligned_cols=186 Identities=16% Similarity=0.138 Sum_probs=107.9
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTME-LNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~-~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
+-+-.+.+....|+.++|++.+.. .....+.+++++..+|++|-++-... . .......++|+.+|.++.+++|+
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s----~-~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLES----N-FTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc----C-ccchHHHHHHHHHHHHHHcCCcc
Confidence 334445421113999999999999 67788999999999999998764321 0 01233488999999999999998
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHH-HHHHHH-HHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGV-VFRDQM-NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~-~a~~~~-~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
...+. +++.++...|+.......+.... +....+ ++-. +++ ...+| ..| .+++.. .+
T Consensus 259 ~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-~~~-~~dYW-d~A-Tl~Ea~-----------vL----- 317 (374)
T PF13281_consen 259 YYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-LEK-MQDYW-DVA-TLLEAS-----------VL----- 317 (374)
T ss_pred ccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-ccc-cccHH-HHH-HHHHHH-----------HH-----
Confidence 77775 56666666665322111111100 000111 1110 111 11111 111 122210 01
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhhhcc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTYSY 257 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~~~~ 257 (259)
.|++++|+.++++++.+.|.. |. +.. +-+=+..+..+...... +..++-+++||-
T Consensus 318 ~~d~~ka~~a~e~~~~l~~~~----W~-l~S-------t~~ni~Li~~~~~~~~~-~~~~~~~~~fW~ 372 (374)
T PF13281_consen 318 AGDYEKAIQAAEKAFKLKPPA----WE-LES-------TLENIKLIRHFRKRPEE-PSPKQQLFNFWM 372 (374)
T ss_pred cCCHHHHHHHHHHHhhcCCcc----hh-HHH-------HHHHHHHHHHHhcCCCC-CCchhhhcchhh
Confidence 389999999999999999832 32 222 33345566666554444 777777788874
No 195
>KOG0376|consensus
Probab=97.94 E-value=9.1e-06 Score=72.41 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
.+...|.|||+++||.+.++-..+..+... +++..|+.-+.+|++++| ....+|+..|.
T Consensus 22 ~avdlysKaI~ldpnca~~~anRa~a~lK~--------------------e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 22 VAVDLYSKAIELDPNCAIYFANRALAHLKV--------------------ESFGGALHDALKAIELDP-TYIKAYVRRGT 80 (476)
T ss_pred HHHHHHHHHHhcCCcceeeechhhhhheee--------------------chhhhHHHHHHhhhhcCc-hhhheeeeccH
Confidence 567899999999999999999888777664 789999999999999999 78999999999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 221 CYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 221 ~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
+.+.++++.+|...|++...+.|.++.-+
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 99999999999999999999999887644
No 196
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.90 E-value=0.00089 Score=60.37 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=105.1
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----------
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN---------- 111 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~---------- 111 (259)
.. .+.++-+++-+++++.+|+.+++|..||.=-.. ...+....+.+|++.-+..+..+..
T Consensus 180 RE-Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~---------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 180 RE-RNPQARIKAAKEALEINPDCADAYILLAEEEAS---------TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred hc-CCHHHHHHHHHHHHHhhhhhhHHHhhccccccc---------CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 44 789999999999999999999998777642211 1234556666777766666655431
Q ss_pred ------C--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccchHHHHHH
Q psy9159 112 ------N--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSFFERKIA 181 (259)
Q Consensus 112 ------~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~~~~~~~ 181 (259)
+ .-+...+|++..++|... +|++.++..++.+|. +..++.+|-.++.++
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~----------EAIk~~rdLlke~p~~~~l~IrenLie~LLel----------- 308 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLR----------EAIKMFRDLLKEFPNLDNLNIRENLIEALLEL----------- 308 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChH----------HHHHHHHHHHhhCCccchhhHHHHHHHHHHhc-----------
Confidence 0 122344555555555544 678888999988886 557899999999886
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHH-hCC---------------HHHHHHHHHHHhcCCCC
Q psy9159 182 VLIVSDLDEPTAEDAIANCLKAEELA-PAPWKENQLLIAKCYIE-AGE---------------YAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 182 ~~~~~~~~~g~~~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~kal~l~p~ 244 (259)
++|.++...+.|=-++. | ......+.-|....+ .++ -..|++..++|++.+|+
T Consensus 309 ---------q~Yad~q~lL~kYdDi~lp-kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 309 ---------QAYADVQALLAKYDDISLP-KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred ---------CCHHHHHHHHHHhccccCC-chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 55666666665543331 3 222222222222111 122 23578999999999999
Q ss_pred Ccc
Q psy9159 245 SYE 247 (259)
Q Consensus 245 ~~~ 247 (259)
-+.
T Consensus 379 Vp~ 381 (539)
T PF04184_consen 379 VPK 381 (539)
T ss_pred Cch
Confidence 874
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.90 E-value=0.00034 Score=53.16 Aligned_cols=106 Identities=14% Similarity=-0.040 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159 114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190 (259)
Q Consensus 114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (259)
..++.-|......|++. .|.+.++....-.|-.+ .+...||..|+..
T Consensus 11 ~~ly~~a~~~l~~~~Y~----------~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-------------------- 60 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYE----------EAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-------------------- 60 (142)
T ss_pred HHHHHHHHHHHHhCCHH----------HHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--------------------
Confidence 34566666666777776 45667777777777654 6788899988874
Q ss_pred CcHHHHHHHHHHHHhhCCCCc--HHhHHHHHHHHHHhCC---------------HHHHHHHHHHHhcCCCCCccch
Q psy9159 191 PTAEDAIANCLKAEELAPAPW--KENQLLIAKCYIEAGE---------------YAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~~~~~~g~---------------~~eA~~~~~kal~l~p~~~~~~ 249 (259)
+++++|+..+++-|+++|++. ..+++..|.+++.+.. ..+|...|++.+..-|++.-..
T Consensus 61 ~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 61 GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 889999999999999999442 2468889999999987 8999999999999999886543
No 198
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.89 E-value=0.00065 Score=67.29 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=107.2
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC----
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDP-----DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN---- 112 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~---- 112 (259)
.. |++++|...+++++...|... .++..+|.++...|++. +|...+++++......
T Consensus 464 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~--------------~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 464 ND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA--------------RALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred hC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHhhhcchH
Confidence 45 999999999999988555432 23455677777777654 8888888887654332
Q ss_pred --hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC-----CC---ChhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159 113 --SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA-----PK---DFTLYSLKGRYQYEISKLSFFERKIAV 182 (259)
Q Consensus 113 --~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~-----P~---~~~~~~~lG~~~~~~~~~~~~~~~~~~ 182 (259)
..++..+|.++...|++..+ ...+++++.+- +. ....+..+|.++...
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A----------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 586 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAA----------YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW------------ 586 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHH----------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh------------
Confidence 12345567777777877744 44445554431 11 223345666666553
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHhhCC----CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 183 LIVSDLDEPTAEDAIANCLKAEELAP----APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 183 ~~~~~~~~g~~~eAi~~~~kAi~l~P----~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
|++++|..++.+++.+.. ......+..+|.++...|++++|.+.+.++..+.+
T Consensus 587 --------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 587 --------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred --------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 889999999999988632 12244567789999999999999999999977643
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.88 E-value=1.5e-05 Score=54.32 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc----CCCC---hhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM----APKD---FTLYSLKGRYQYEISKLSFFERKIAV 182 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l----~P~~---~~~~~~lG~~~~~~~~~~~~~~~~~~ 182 (259)
|+-+.++.++|.++...|++. +|+..+++++++ .|++ +.++..+|.++...
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~------------ 59 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYD----------EALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL------------ 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HH----------HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------------
Confidence 344567889999999999988 456677777654 2232 45678888888775
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 183 LIVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 183 ~~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
|++++|++++++|+++.
T Consensus 60 --------g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 60 --------GDYEEALEYYQKALDIF 76 (78)
T ss_dssp --------THHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHhhh
Confidence 88999999999999863
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.87 E-value=0.0012 Score=54.83 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhhchhhHHHHHhcHH
Q psy9159 64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT---QKWYGICVGANGQFQSLKEKIKCGV 140 (259)
Q Consensus 64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~---~~~la~~~~~~~~~~~~~~~~~~~~ 140 (259)
.++.|+.-|..-.+.|++. +|...+++.....|..+.+ ...++.+..+.+++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~--------------~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~---------- 88 (254)
T COG4105 33 PASELYNEGLTELQKGNYE--------------EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYD---------- 88 (254)
T ss_pred CHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHH----------
Confidence 3566677777777777765 9999999999999998765 334455555555555
Q ss_pred HHHHHHHHHHccCCCChhH---HHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHh---
Q psy9159 141 VFRDQMNKAIQMAPKDFTL---YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN--- 214 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~---~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~--- 214 (259)
.|....++-+.+.|+++++ ++..|..++..-+ ...| .+....+|+..|+..++--| +...+
T Consensus 89 ~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~--~~~r----------Dq~~~~~A~~~f~~~i~ryP-nS~Ya~dA 155 (254)
T COG4105 89 LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID--DVTR----------DQSAARAAFAAFKELVQRYP-NSRYAPDA 155 (254)
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC--cccc----------CHHHHHHHHHHHHHHHHHCC-CCcchhhH
Confidence 5677888999999999864 6778877655422 1111 12335788899999999888 43111
Q ss_pred --------------HHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 215 --------------QLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 215 --------------~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
=+.+|..|.+.|.+-.|+.-++.+++--|++...++.+
T Consensus 156 ~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL 207 (254)
T COG4105 156 KARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL 207 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence 15678899999999999999999999998888776654
No 201
>KOG1130|consensus
Probab=97.87 E-value=0.00017 Score=63.49 Aligned_cols=192 Identities=12% Similarity=0.074 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhhchhccc--Cc----HHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 45 DDKAKAYNLTMELNNK------QPNDPDVLYRLAKACHCLYDIKRRE--ND----KEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~~~--~~----~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
|.|++|+-...+-+.. ---..-++|++|.+|...|+....+ .+ .++....++.|.++|+.-|++-...
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888887765544332 1233578889999998888765321 11 2355667788888888888776554
Q ss_pred hHHHHHHHHHHHHhh-------chhhHHHHH-hcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc----hHHHHH
Q psy9159 113 SNTQKWYGICVGANG-------QFQSLKEKI-KCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS----FFERKI 180 (259)
Q Consensus 113 ~~~~~~la~~~~~~~-------~~~~~~~~~-~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~----~~~~~~ 180 (259)
.+. ...|.+++.+| +|..++..- .....+.+.-++|-+- .++.++|.+|.-++.++ +|.+.+
T Consensus 189 gDr-~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR-----RA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 189 GDR-LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER-----RAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred hhH-HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH-----HhhcccchhhhhhcccHhHHHHHHHHH
Confidence 332 23455555544 444332211 1112233444444332 45556666554432221 111111
Q ss_pred HH------------HHhcC----CCCCcHHHHHHHHHHHHhhCCCC-----cHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 181 AV------------LIVSD----LDEPTAEDAIANCLKAEELAPAP-----WKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 181 ~~------------~~~~~----~~~g~~~eAi~~~~kAi~l~P~~-----~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
.. .+|.. .-...+++||.++.+=+.+...- -.+++..||.++..+|..++|+...++.+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 10 00000 00244555555555555553200 12345555555555566666655555555
Q ss_pred cCC
Q psy9159 240 AIP 242 (259)
Q Consensus 240 ~l~ 242 (259)
++.
T Consensus 343 ~~s 345 (639)
T KOG1130|consen 343 RSS 345 (639)
T ss_pred HHH
Confidence 554
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.85 E-value=3.1e-05 Score=43.81 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
+.+|+++|.+|..+|++. +|+..+++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~--------------~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYE--------------EALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCch--------------HHHHHHHHHHHHCcCC
Confidence 468999999999999875 9999999999999974
No 203
>KOG0545|consensus
Probab=97.83 E-value=0.00013 Score=60.00 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=78.5
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhh--------cCCCCHHH----------HHHHHHHHHHhhchhcccCcHHHHHH
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNN--------KQPNDPDV----------LYRLAKACHCLYDIKRRENDKEASEK 93 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~----------~~~la~~~~~~g~~~~~~~~~~~~~~ 93 (259)
-++++.+| .. |+|++|.+.|..++. ..|.+|+. +.+.+.++...|++.
T Consensus 182 ~q~GN~lf--k~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y----------- 247 (329)
T KOG0545|consen 182 HQEGNRLF--KL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY----------- 247 (329)
T ss_pred HHhhhhhh--hh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-----------
Confidence 46788888 66 999999999988865 46777653 444555555556554
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHH
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~ 161 (259)
++++.+...|..+|+|..+++.-|.+....=+.. +|...+.++|+++|.-..+-.
T Consensus 248 ---evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~----------eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 248 ---EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEA----------EAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred ---HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHH----------HHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999988887765443332 567899999999998776543
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.9e-05 Score=42.80 Aligned_cols=34 Identities=41% Similarity=0.606 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
+++++.+|.++...|++. +|++.++++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~--------------~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYE--------------EAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHCcCC
Confidence 578999999999999875 9999999999999986
No 205
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.77 E-value=0.0028 Score=55.37 Aligned_cols=168 Identities=10% Similarity=0.059 Sum_probs=107.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhh
Q psy9159 52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQS 131 (259)
Q Consensus 52 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~ 131 (259)
.-+++.+..+|+|++.|..+....-..-.... ..+.......+.-+.++++||+.+|++...+..+=.+.....+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~--~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-- 81 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQS--SSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-- 81 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccc--cchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH--
Confidence 45788899999999999988876655433210 00345667778999999999999998887654433333322222
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh-hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC---
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI-SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA--- 207 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~--- 207 (259)
....+.+++++..+|+++..|..+=.+.... +.+. +.. + ..-|.+++..+.....-.
T Consensus 82 --------~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~-~---------~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 82 --------EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSD-V---------RDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred --------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHH-H---------HHHHHHHHHHHHHhhcccccc
Confidence 2345778999999999999987776543321 1100 000 0 022444444444433321
Q ss_pred ----C---CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 208 ----P---APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 208 ----P---~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
| .....+...+...+...|..+.|+..++-.++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0 0113446677788889999999999999999876
No 206
>KOG2053|consensus
Probab=97.75 E-value=0.006 Score=58.46 Aligned_cols=191 Identities=9% Similarity=-0.068 Sum_probs=126.4
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc----------cC-cH---------HHHHHHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR----------EN-DK---------EASEKYILQGIEY 101 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~----------~~-~~---------~~~~~~~~~A~~~ 101 (259)
.. +++++|++...+.++..|+.+.+...-|.+..++|+..+. ++ |. -+..+..++|...
T Consensus 21 d~-~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DS-SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hh-HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45 8999999999999999999999999999999999987642 11 11 1456778999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh-cc-------
Q psy9159 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS-KL------- 173 (259)
Q Consensus 102 ~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~-~~------- 173 (259)
|++++..+|. -+-...+-+++.+.+++.... ..+.+.| +..|+++-+....-.+.++.. ..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ------kaa~~Ly----K~~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQ------KAALQLY----KNFPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HhCCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999 666677777777777765221 1234444 478888865443333333321 10
Q ss_pred --chHHHHHHHHHhcC----------------CCCCcHHHHHHHHHHHH-hhCCCCcHHhH-HHHHHHHHHhCCHHHHHH
Q psy9159 174 --SFFERKIAVLIVSD----------------LDEPTAEDAIANCLKAE-ELAPAPWKENQ-LLIAKCYIEAGEYAKAVQ 233 (259)
Q Consensus 174 --~~~~~~~~~~~~~~----------------~~~g~~~eAi~~~~kAi-~l~P~~~~~~~-~~la~~~~~~g~~~eA~~ 233 (259)
+-..+.+...+... -.+|++++|.+.+..-+ +..| ....+. ..-...+..++++.+-.+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHH
Confidence 01112222111111 11688999999994333 3333 222222 234577888899999999
Q ss_pred HHHHHhcCCCCC
Q psy9159 234 WLDKAKAIPVVS 245 (259)
Q Consensus 234 ~~~kal~l~p~~ 245 (259)
...++++-++++
T Consensus 248 l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 248 LSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHhCCcc
Confidence 999999988776
No 207
>KOG4555|consensus
Probab=97.75 E-value=0.0015 Score=48.88 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh----hHHHHHHHHHHHh
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF----TLYSLKGRYQYEI 170 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~----~~~~~lG~~~~~~ 170 (259)
++.|++.|.++|.+-|.++.++.+-+..+...++.+ .+.+.+++|+++.-... .++...|.+|...
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e----------~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDE----------EALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 359999999999999999999999999998888877 45688899999865543 4567777766543
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
|+-+.|..-|+.|-++..
T Consensus 129 --------------------g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 --------------------GNDDAARADFEAAAQLGS 146 (175)
T ss_pred --------------------CchHHHHHhHHHHHHhCC
Confidence 778888888888877654
No 208
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.74 E-value=0.002 Score=63.88 Aligned_cols=157 Identities=13% Similarity=0.022 Sum_probs=105.3
Q ss_pred CCcCCHHHHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPN---------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.. |++++|...+..+....+. ..++...+|.++...|++. +|...++++++..|..
T Consensus 421 ~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--------------~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 421 SQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE--------------EAERLAELALAELPLT 485 (903)
T ss_pred HC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH--------------HHHHHHHHHHhcCCCc
Confidence 45 8999999998887654221 1234444566666666654 8999999999866554
Q ss_pred hH-----HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC------hhHHHHHHHHHHHhhccchHHHHHH
Q psy9159 113 SN-----TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD------FTLYSLKGRYQYEISKLSFFERKIA 181 (259)
Q Consensus 113 ~~-----~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~------~~~~~~lG~~~~~~~~~~~~~~~~~ 181 (259)
.. +...+|.++...|++. .+...+++++.+.... ..++..+|.++..
T Consensus 486 ~~~~~~~a~~~lg~~~~~~G~~~----------~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~------------ 543 (903)
T PRK04841 486 WYYSRIVATSVLGEVHHCKGELA----------RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA------------ 543 (903)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH------------
Confidence 32 3345666666667766 3455666666543321 1244556666554
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHhhCCC----C---cHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 182 VLIVSDLDEPTAEDAIANCLKAEELAPA----P---WKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 182 ~~~~~~~~~g~~~eAi~~~~kAi~l~P~----~---~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
.|++++|..++.+++++... . ....+..+|.++...|++++|...+++++.+..
T Consensus 544 --------~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 544 --------QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 38899999999999986320 1 122356789999999999999999999988754
No 209
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0037 Score=52.97 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=104.9
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
+.+.++..++ .. |++.+|...+..++...|++.++...++.+|...|+.. .| +..+...
T Consensus 136 ~~~~~~~~~~--~~-e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e--------------~A----~~iL~~l 194 (304)
T COG3118 136 EALAEAKELI--EA-EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE--------------AA----QAILAAL 194 (304)
T ss_pred HHHHHhhhhh--hc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH--------------HH----HHHHHhC
Confidence 4566666777 66 99999999999999999999999999999999988764 33 3345555
Q ss_pred CCChHHHHHHH-----HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159 110 PNNSNTQKWYG-----ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLI 184 (259)
Q Consensus 110 P~~~~~~~~la-----~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 184 (259)
|.+...-.+.+ .++.+...... ...+++.+.-||+|..+-+.++..+...
T Consensus 195 P~~~~~~~~~~l~a~i~ll~qaa~~~~-----------~~~l~~~~aadPdd~~aa~~lA~~~~~~-------------- 249 (304)
T COG3118 195 PLQAQDKAAHGLQAQIELLEQAAATPE-----------IQDLQRRLAADPDDVEAALALADQLHLV-------------- 249 (304)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------
Confidence 65544433333 01111111110 2456777889999999999999877664
Q ss_pred hcCCCCCcHHHHHHHHHHHHhhCCCC-cHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 185 VSDLDEPTAEDAIANCLKAEELAPAP-WKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 185 ~~~~~~g~~~eAi~~~~kAi~l~P~~-~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
|+.++|.+++-..+..|-+. +..+.-.+=.++...|..+.+...+++
T Consensus 250 ------g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 250 ------GRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred ------CCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 78899998888888876411 234555666666666655545444443
No 210
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.70 E-value=4.6e-05 Score=43.00 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.+|+.+|.+|..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999984
No 211
>KOG2796|consensus
Probab=97.69 E-value=0.0059 Score=51.05 Aligned_cols=125 Identities=13% Similarity=0.125 Sum_probs=91.7
Q ss_pred CCcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH----HhCC--CChH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQ-PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM----ELAP--NNSN 114 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal----~~~P--~~~~ 114 (259)
+. |.|.-..+++.+.++.+ |.+|.....||++.++.|+.. .|..++++.= .++. ++-.
T Consensus 189 G~-kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k--------------~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 189 GM-KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK--------------TAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred cc-hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH--------------HHHHHHHHHHHHHhhhhccchhHH
Confidence 66 89999999999999998 788999999999999999864 5555555322 2221 1222
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHH
Q psy9159 115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194 (259)
Q Consensus 115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 194 (259)
++.+.+.++....++. .+-..+.+.+..||.++.+..+.+.|..-. |+..
T Consensus 254 V~~n~a~i~lg~nn~a----------~a~r~~~~i~~~D~~~~~a~NnKALcllYl--------------------g~l~ 303 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFA----------EAHRFFTEILRMDPRNAVANNNKALCLLYL--------------------GKLK 303 (366)
T ss_pred HHhhhhhheecccchH----------HHHHHHhhccccCCCchhhhchHHHHHHHH--------------------HHHH
Confidence 2333333333333333 345677899999999999999999887654 7789
Q ss_pred HHHHHHHHHHhhCCCCc
Q psy9159 195 DAIANCLKAEELAPAPW 211 (259)
Q Consensus 195 eAi~~~~kAi~l~P~~~ 211 (259)
+|++..+.+++..|...
T Consensus 304 DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHhccCCccc
Confidence 99999999999999543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.0073 Score=53.40 Aligned_cols=184 Identities=14% Similarity=0.026 Sum_probs=113.5
Q ss_pred CcCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHH---hhchhcccCcHHHHHHHHHHHHHHHHH-HHHhCCCChH
Q psy9159 43 KKDDKAKAYNLTMELNNK----QPNDPDVLYRLAKACHC---LYDIKRRENDKEASEKYILQGIEYAKK-AMELAPNNSN 114 (259)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~---~g~~~~~~~~~~~~~~~~~~A~~~~~k-al~~~P~~~~ 114 (259)
+..+|+.-+.+.+..-.. -++.+.+-+..|.++.+ .|+. ++|+..+.. ....++.+++
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr--------------e~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR--------------EKALQILLPVLESDENPDPD 218 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH--------------HHHHHHHHHHHhccCCCChH
Confidence 348888888888888776 67788888888988888 4443 599999998 5566688899
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch---HHHHHHHHHhcCCCCC
Q psy9159 115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF---FERKIAVLIVSDLDEP 191 (259)
Q Consensus 115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~~~~~~~~g 191 (259)
.+-..|.++-..-.-.+. .......+|+..|.++.+++|+....-+ ++.++.-.|+... -.+.+...+
T Consensus 219 ~~gL~GRIyKD~~~~s~~-~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN-~AtLL~~~g~~~~~~~el~~i~~~l------- 289 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNF-TDRESLDKAIEWYRKGFEIEPDYYSGIN-AATLLMLAGHDFETSEELRKIGVKL------- 289 (374)
T ss_pred HHHHHHHHHHHHHHHcCc-cchHHHHHHHHHHHHHHcCCccccchHH-HHHHHHHcCCcccchHHHHHHHHHH-------
Confidence 888888888655211000 0112245788999999999987554333 2323333222100 001111000
Q ss_pred cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhhh
Q psy9159 192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTT 254 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~~ 254 (259)
+.-.-++- .+++....-.+-.++.+.+..|++++|++++++++.+.|..=+-+-+..|
T Consensus 290 ----~~llg~kg-~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 290 ----SSLLGRKG-SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred ----HHHHHhhc-cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 00000111 12232223345667888999999999999999999998776554444443
No 213
>KOG3081|consensus
Probab=97.60 E-value=0.012 Score=49.25 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
+++.+|.-.|+..-+-.| ..+.....+|.|.+.+|++++|...++.++..++.+|
T Consensus 187 ek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred hhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 445555555555555322 2344455555555555666666666666555555443
No 214
>KOG2376|consensus
Probab=97.49 E-value=0.0017 Score=59.59 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHH
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYE 169 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~ 169 (259)
+.+++|+..+.+.+.+.|++..+..---.++...+.|. +++ +.|+.++.+. ...+..+.|.++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~-------------~AL-k~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE-------------DAL-KLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH-------------HHH-HHHHhcchhhhcchhhHHHHHHHHH
Confidence 45789999999999999999999877777777776665 333 5566666422 112556666666
Q ss_pred hhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 170 ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
+ ++.++|+.+++ .+++ ......--.|.++.++|+|++|...|+..++-+-++.
T Consensus 92 l--------------------nk~Dealk~~~---~~~~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 92 L--------------------NKLDEALKTLK---GLDR-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred c--------------------ccHHHHHHHHh---cccc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 4 78899999999 4555 3334455578999999999999999999977665444
No 215
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.48 E-value=0.00021 Score=40.24 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
.+|+.+|.++..+ |++++|+++|+++++++|
T Consensus 2 ~~~~~lg~~y~~~--------------------~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQL--------------------GDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHT--------------------TSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCC
Confidence 5789999999875 889999999999999999
No 216
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0044 Score=53.08 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+..+.|...|.++.+..+-..++|...|.+-+..++.. +.|...|+++++.-|.+...|..+...+.
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~-------------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP-------------KRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H-------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56889999999999877788999999998877755543 36999999999999999999988888887
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCL 201 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~ 201 (259)
..++.. .+...+++++..-|... ..|-..-.+-... |+.+...+..+
T Consensus 82 ~~~d~~----------~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~--------------------Gdl~~v~~v~~ 131 (280)
T PF05843_consen 82 KLNDIN----------NARALFERAISSLPKEKQSKKIWKKFIEFESKY--------------------GDLESVRKVEK 131 (280)
T ss_dssp HTT-HH----------HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH--------------------S-HHHHHHHHH
T ss_pred HhCcHH----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHH
Confidence 777655 46789999999877766 3444444333332 77788888888
Q ss_pred HHHhhCC
Q psy9159 202 KAEELAP 208 (259)
Q Consensus 202 kAi~l~P 208 (259)
++.+.-|
T Consensus 132 R~~~~~~ 138 (280)
T PF05843_consen 132 RAEELFP 138 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8888877
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.0074 Score=47.99 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
+.-+..+. .. |++.||...|.+++. ...+++..+..++++.+..++.. .|...+++..+-+|
T Consensus 93 ~rLa~al~--el-Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A--------------~a~~tLe~l~e~~p 155 (251)
T COG4700 93 YRLANALA--EL-GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA--------------AAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHH--Hh-hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH--------------HHHHHHHHHhhcCC
Confidence 34444555 44 999999999999976 67899999999999999988876 88999999999988
Q ss_pred C--ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 111 N--NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 111 ~--~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
. .|+.+..+|.++...|.+. ++...++-++..-|.- .+-...|.|+.++|
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a----------~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg 207 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYA----------DAESAFEVAISYYPGP-QARIYYAEMLAKQG 207 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCch----------hHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 6 5777889999999998876 4567888899888864 55566677776653
No 218
>KOG1308|consensus
Probab=97.38 E-value=5.9e-05 Score=64.70 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
.+++.+.+||.++|..+..|...+.++.++ ++...||.-+..|++++| +...-|-..|.
T Consensus 132 ~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl--------------------~kp~~airD~d~A~ein~-Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 132 TAIELFTSAIELNPPLAILYAKRASVFLKL--------------------KKPNAAIRDCDFAIEINP-DSAKGYKFRGY 190 (377)
T ss_pred hhhcccccccccCCchhhhcccccceeeec--------------------cCCchhhhhhhhhhccCc-ccccccchhhH
Confidence 567899999999999999999999998875 678999999999999999 77788888999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 221 CYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 221 ~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
+...+|++++|.+.++.+.+++-+..
T Consensus 191 A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 191 AERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred HHHHhhchHHHHHHHHHHHhccccHH
Confidence 99999999999999999999885543
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.035 Score=48.98 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+...|.+.-.++.+..|+-+..-...+++++.-|+.. +|-.+++.+.+.+| +|+++.. .+..
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~r--------------Kg~~ilE~aWK~eP-HP~ia~l--Y~~a 305 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLR--------------KGSKILETAWKAEP-HPDIALL--YVRA 305 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchh--------------hhhhHHHHHHhcCC-ChHHHHH--HHHh
Confidence 67889999999999999999999999999999988865 89999999999999 5665433 3444
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
+.|+.. +++ .+..++.-++.|||.+......+.-+.. |.+..|...-+.+.
T Consensus 306 r~gdta--~dR-------lkRa~~L~slk~nnaes~~~va~aAlda--------------------~e~~~ARa~Aeaa~ 356 (531)
T COG3898 306 RSGDTA--LDR-------LKRAKKLESLKPNNAESSLAVAEAALDA--------------------GEFSAARAKAEAAA 356 (531)
T ss_pred cCCCcH--HHH-------HHHHHHHHhcCccchHHHHHHHHHHHhc--------------------cchHHHHHHHHHHh
Confidence 445432 222 2334666789999999998888766553 78999999999999
Q ss_pred hhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcCC
Q psy9159 205 ELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l~ 242 (259)
...|. ..+++-|+.+-... |+-.++..|+-+++.-+
T Consensus 357 r~~pr--es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 357 REAPR--ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hhCch--hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 99993 56788899888776 99999999999999854
No 220
>KOG0530|consensus
Probab=97.34 E-value=0.015 Score=48.57 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+-.+|+++.+.+|..+|.+-.+|.-.=.+...++.. +.+-++++.+.++-+|.|..+|.+--.+..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d-------------L~~El~~l~eI~e~npKNYQvWHHRr~ive 123 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD-------------LNKELEYLDEIIEDNPKNYQVWHHRRVIVE 123 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 5667777777777777887777775554444444432 357788888888888998888888877777
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..|+..+ .-.+..++.|..|..|..+|...--++... +.+++-+.+....+
T Consensus 124 ~l~d~s~---------rELef~~~~l~~DaKNYHaWshRqW~~r~F--------------------~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 124 LLGDPSF---------RELEFTKLMLDDDAKNYHAWSHRQWVLRFF--------------------KDYEDELAYADELL 174 (318)
T ss_pred HhcCccc---------chHHHHHHHHhccccchhhhHHHHHHHHHH--------------------hhHHHHHHHHHHHH
Confidence 7776542 124677888888888888887776554432 55888888888888
Q ss_pred hhCCCCcHHhHHHHHHHHHHhC------CHHHHHHHHHHHhcCCCCCcc
Q psy9159 205 ELAPAPWKENQLLIAKCYIEAG------EYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~~g------~~~eA~~~~~kal~l~p~~~~ 247 (259)
+.|- .+-.+|.++-.+..... ..+.-+.+..+.+.+.|.|-.
T Consensus 175 e~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 175 EEDI-RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred HHhh-hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 8876 44455655443333321 244567788888888888764
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.32 E-value=0.0044 Score=56.04 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHHHHhhCCC-CcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPA-PWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
.|+.+|||+.|+..++..|. ++..++.+|-.++..++++.++...+.|-
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 49999999999999998875 35678999999999999999999998885
No 222
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.31 E-value=0.0058 Score=44.29 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=68.5
Q ss_pred HHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP---DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
.+..++ .. |++-+|+++.+..+...+++. -++..-|.++..++... .+++.+...+..+++.+.++..+.|
T Consensus 2 ~A~~~~--~r-GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t---en~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYF--AR-GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT---ENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHH--Hc-cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc---cCchHHHHHHHHhHHHHHHHhccCh
Confidence 345566 56 999999999999999988887 55666688887776544 4677888899999999999999999
Q ss_pred CChHHHHHHHHHHHHh
Q psy9159 111 NNSNTQKWYGICVGAN 126 (259)
Q Consensus 111 ~~~~~~~~la~~~~~~ 126 (259)
+.+..++.+|.-++..
T Consensus 76 ~~A~~L~~la~~l~s~ 91 (111)
T PF04781_consen 76 DSAHSLFELASQLGSV 91 (111)
T ss_pred hHHHHHHHHHHHhhhH
Confidence 9877666666554433
No 223
>KOG1308|consensus
Probab=97.28 E-value=0.00014 Score=62.53 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=81.2
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
-++...+ .+ |.+++|++.+..+|..+|....++-..+.++..++... .|+.-|..|++++|+.
T Consensus 119 ~~A~eAl--n~-G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--------------~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 119 VQASEAL--ND-GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--------------AAIRDCDFAIEINPDS 181 (377)
T ss_pred HHHHHHh--cC-cchhhhhcccccccccCCchhhhcccccceeeeccCCc--------------hhhhhhhhhhccCccc
Confidence 3444566 66 99999999999999999999999999999999988765 8999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK 155 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~ 155 (259)
...+.+-+.+...+|++.. +...+..+.+++-+
T Consensus 182 a~~ykfrg~A~rllg~~e~----------aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 182 AKGYKFRGYAERLLGNWEE----------AAHDLALACKLDYD 214 (377)
T ss_pred ccccchhhHHHHHhhchHH----------HHHHHHHHHhcccc
Confidence 9999999999998998873 44566666666544
No 224
>KOG0530|consensus
Probab=97.28 E-value=0.039 Score=46.15 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+..+-++.+.++++.+|+|-.+|.-.-.+....|+.. -.-++..++++..|..|..+|.+-.+++.
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s-------------~rELef~~~~l~~DaKNYHaWshRqW~~r 158 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS-------------FRELEFTKLMLDDDAKNYHAWSHRQWVLR 158 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc-------------cchHHHHHHHHhccccchhhhHHHHHHHH
Confidence 56778889999999999999999998888888888653 15689999999999999999999999998
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
..+.++. -..+..+.|+.|--|-++|...=-+..... +....-..+.-+.+..+.|
T Consensus 159 ~F~~~~~----------EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~--------------~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 159 FFKDYED----------ELAYADELLEEDIRNNSAWNQRYFVITNTK--------------GVISKAELERELNYTKDKI 214 (318)
T ss_pred HHhhHHH----------HHHHHHHHHHHhhhccchhheeeEEEEecc--------------CCccHHHHHHHHHHHHHHH
Confidence 8887762 345667888888888888866422111100 0000122567788999999
Q ss_pred hhCCCCcHHhHHHHHHHHHH
Q psy9159 205 ELAPAPWKENQLLIAKCYIE 224 (259)
Q Consensus 205 ~l~P~~~~~~~~~la~~~~~ 224 (259)
.+.| ++..+|.+|.-++..
T Consensus 215 ~~vP-~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 215 LLVP-NNESAWNYLKGLLEL 233 (318)
T ss_pred HhCC-CCccHHHHHHHHHHh
Confidence 9999 788899999888876
No 225
>KOG1070|consensus
Probab=97.26 E-value=0.012 Score=58.91 Aligned_cols=154 Identities=12% Similarity=-0.011 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhh
Q psy9159 49 KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM-ELAPNNSNTQKWYGICVGANG 127 (259)
Q Consensus 49 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal-~~~P~~~~~~~~la~~~~~~~ 127 (259)
+-.+-+++.+..+|++.-.|.+.-.-..+++.. ++|++.+++|| ++++...+=..++=.++..+.
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEi--------------ekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE 1507 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEI--------------EKARKIAERALKTINFREEEEKLNIWIAYLNLE 1507 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhh--------------HHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH
Confidence 345567888888999988887655555555544 59999999999 566654433322222333332
Q ss_pred chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 128 QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
+..+.. ....+.+++|-+.... ..+|..|..+|-.. +++++|.+.++.-++-.
T Consensus 1508 n~yG~e------esl~kVFeRAcqycd~-~~V~~~L~~iy~k~--------------------ek~~~A~ell~~m~KKF 1560 (1710)
T KOG1070|consen 1508 NAYGTE------ESLKKVFERACQYCDA-YTVHLKLLGIYEKS--------------------EKNDEADELLRLMLKKF 1560 (1710)
T ss_pred HhhCcH------HHHHHHHHHHHHhcch-HHHHHHHHHHHHHh--------------------hcchhHHHHHHHHHHHh
Confidence 222211 1234566666554322 24455555556543 66788888888888776
Q ss_pred CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 208 PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 208 P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
. +...+|..+|..++.+.+-++|.+.+.+|++.-|.
T Consensus 1561 ~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1561 G-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred c-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 6 55677888888888888888888888888877766
No 226
>KOG2053|consensus
Probab=97.24 E-value=0.011 Score=56.64 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
.+++.+|+..+.+.++..|+-.-+...-|.++.++|... ++..+++..-.+.|++-..+-.+-.+|.++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~----------ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~- 90 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGD----------EALKLLEALYGLKGTDDLTLQFLQNVYRDL- 90 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCch----------hHHHHHhhhccCCCCchHHHHHHHHHHHHH-
Confidence 456789999999999999999988888899999988876 345666666667888888999999988775
Q ss_pred ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
|++++|..+|+++++.+| . -.....+-.+|.+.+.|.+-.+.--+.-..-|.
T Consensus 91 -------------------~~~d~~~~~Ye~~~~~~P-~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 91 -------------------GKLDEAVHLYERANQKYP-S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred -------------------hhhhHHHHHHHHHHhhCC-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 779999999999999999 5 777888888888888776544333333334443
No 227
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.23 E-value=0.045 Score=46.80 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=115.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN-SNTQKWYGICV 123 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~-~~~~~~la~~~ 123 (259)
.+..+|++.|..+. ...++.+.+.||.+|....... .+..+|..++++|....-.. ..+...++.++
T Consensus 91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~----------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~ 158 (292)
T COG0790 91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP----------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAY 158 (292)
T ss_pred ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc----------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 56889999999554 4577889999999988643221 13469999999998886433 23367777776
Q ss_pred HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
..-..-.+.. .....+...|.+|-... ++.+.+.+|.+|.. + .--..++++|+.+|++|
T Consensus 159 ~~g~~~~~~~---~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G---------------~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 159 LSGLQALAVA---YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-G---------------LGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HcChhhhccc---HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-C---------------CCCCcCHHHHHHHHHHH
Confidence 6432000000 11124567777776665 88899999977654 1 11136899999999999
Q ss_pred HhhCCCCcHHhHHHHHHHHHHhC---------------CHHHHHHHHHHHhcCCCCCcc
Q psy9159 204 EELAPAPWKENQLLIAKCYIEAG---------------EYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 204 i~l~P~~~~~~~~~la~~~~~~g---------------~~~eA~~~~~kal~l~p~~~~ 247 (259)
.+... ....+.++ ++...| +...|..++.++....+....
T Consensus 218 a~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 218 AEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 99864 67788888 777666 888999999999887766544
No 228
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.23 E-value=0.00018 Score=41.35 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
++.+||.+|..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999977554
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.23 E-value=0.00045 Score=38.39 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
++++.+|.++..+|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999998874
No 230
>KOG0545|consensus
Probab=97.22 E-value=0.0089 Score=49.49 Aligned_cols=53 Identities=15% Similarity=0.034 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
|.|-+++++....+...| .+..+++..|.+....=+.++|...+.++++++|.
T Consensus 244 ~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 445555555555555555 44555555555555555555555555555555543
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.18 E-value=0.0071 Score=55.63 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh--chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhcc
Q psy9159 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANG--QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~--~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~ 173 (259)
+.|+..+.++.+ .++--.....+..+..... .+-+....-.....+.+.+++.++.-|+.+-.++..|+++...
T Consensus 205 ~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~--- 280 (468)
T PF10300_consen 205 ELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK--- 280 (468)
T ss_pred HHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---
Confidence 588888888877 4433333223322221111 0111000011233567889999999999999999999988664
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcH----HhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK----ENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~----~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
|+.++|++.|++++.... .+. -.++.+|.+++.+.++++|.+++.+..+.+
T Consensus 281 -----------------g~~~~Ai~~~~~a~~~q~-~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 281 -----------------GNLEEAIESFERAIESQS-EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred -----------------cCHHHHHHHHHHhccchh-hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 889999999999996443 333 348899999999999999999999998865
No 232
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.17 E-value=0.035 Score=49.28 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=94.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-------CCC------------ChHH-
Q psy9159 56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-------APN------------NSNT- 115 (259)
Q Consensus 56 ~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-------~P~------------~~~~- 115 (259)
..++.+|-.++.+..++.++...|+.. ...+.++.|+-.+++++-- ++. |-..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~-------~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHA-------QANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence 445678999999999999999999765 6667778888777766522 222 2222
Q ss_pred --HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhH-HHHHHHHHHHhhccchHHHHHHHHHhcCCCCC
Q psy9159 116 --QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTL-YSLKGRYQYEISKLSFFERKIAVLIVSDLDEP 191 (259)
Q Consensus 116 --~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~-~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g 191 (259)
.+.+...+++.|.+. .|.+..+=.+.+||. ||.. ...+-....+.+..+|+.......
T Consensus 104 lal~r~i~~L~~RG~~r----------TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~-------- 165 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWR----------TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP-------- 165 (360)
T ss_pred HHHHHHHHHHHhcCcHH----------HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH--------
Confidence 122233333444433 566777788999999 6643 333333333333333333221100
Q ss_pred cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH---------------HHHHHHHHHHhcCCCC
Q psy9159 192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY---------------AKAVQWLDKAKAIPVV 244 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~---------------~eA~~~~~kal~l~p~ 244 (259)
... ++...+..-| + ..+.++.++..+++. ++|.+.+.+|+..-|.
T Consensus 166 --~~~--~~~~~~~~lP-n---~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 166 --LAK--CYRNWLSLLP-N---FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred --hhh--hhhhhhhhCc-c---HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 000 1111223345 2 357788888899888 8999999999987764
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.16 E-value=0.048 Score=48.17 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHH-----------------------------
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGV----------------------------- 140 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~----------------------------- 140 (259)
++++..+.|+.+.+++-++.|.-++++...-......|++.++.+.+....
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 456667899999999999999999887665555667788877654332211
Q ss_pred --HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 141 --VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 141 --~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
.+...-..+++|.|+...+-..-++.+++- |+..++-..++.+.+.+|
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d--------------------~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRD--------------------GNLRKGSKILETAWKAEP 294 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhc--------------------cchhhhhhHHHHHHhcCC
Confidence 234566788899999999888888888875 445555555555666555
No 234
>KOG1070|consensus
Probab=97.14 E-value=0.053 Score=54.70 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHH--------------------------HHHHH
Q psy9159 45 DDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLYDIKRRENDKEASE--------------------------KYILQ 97 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~--------------------------~~~~~ 97 (259)
++.++|.+..++++. +++...+=..++=.+|..+.+.. +..+.-. +.+++
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchh
Confidence 788888888888876 45555555555556666665544 1122222 22344
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHHHHhhccch
Q psy9159 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 98 A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~~~~~~~~~ 175 (259)
|.++++..++.-.+-...|..++..+.+..+.. .+...+.+||+.-|. |....-.-+.+-|+
T Consensus 1549 A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~----------aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk------ 1612 (1710)
T KOG1070|consen 1549 ADELLRLMLKKFGQTRKVWIMYADFLLRQNEAE----------AARELLKRALKSLPKQEHVEFISKFAQLEFK------ 1612 (1710)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcccHHH----------HHHHHHHHHHhhcchhhhHHHHHHHHHHHhh------
Confidence 444444444444444444444444443332211 234555555555555 33333333333333
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|+-+.+...|+-.+.-.| .-.+.|.-+...-++.|+.+-+...|++++.+.
T Consensus 1613 --------------~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1613 --------------YGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred --------------cCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 2778888889999999999 678889888888889999999999999998865
No 235
>KOG1550|consensus
Probab=97.13 E-value=0.029 Score=52.77 Aligned_cols=156 Identities=16% Similarity=0.019 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-------hCCCChHHHHHH
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-------LAPNNSNTQKWY 119 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-------~~P~~~~~~~~l 119 (259)
..+|++.++.+-+. .+..+.+.+|.+|...+.-. .++.+.|+.+++.+.. .. ++.+.+.+
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~---------~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~l 294 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGV---------TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGL 294 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccc---------cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHH
Confidence 57788888888764 67888899999998753322 1234566666666554 54 56677788
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIAN 199 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~ 199 (259)
|.++..-...... +...+...+.+|-++ .++.+.+.+|.++..- . +..++..|.++
T Consensus 295 g~~Y~~g~~~~~~-----d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g----------------~-~~~d~~~A~~y 350 (552)
T KOG1550|consen 295 GRLYLQGLGVEKI-----DYEKALKLYTKAAEL--GNPDAQYLLGVLYETG----------------T-KERDYRRAFEY 350 (552)
T ss_pred HHHHhcCCCCccc-----cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcC----------------C-ccccHHHHHHH
Confidence 8888765432211 233567888888666 4677888999877542 1 12457899999
Q ss_pred HHHHHhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCC
Q psy9159 200 CLKAEELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 200 ~~kAi~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~ 242 (259)
|..|.... .+.+.+.+|.||..- .+...|..+++++.+.+
T Consensus 351 y~~Aa~~G---~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 351 YSLAAKAG---HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHcC---ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99998753 478889999998765 47889999999999887
No 236
>KOG0551|consensus
Probab=97.13 E-value=0.0038 Score=53.64 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=82.3
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHH----HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHH
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDV----LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAM 106 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal 106 (259)
.-++++.+| .. .+|+.|+..|.+.|+..-.|+++ |.+.|-+...+||+ ..++.-+.+++
T Consensus 84 ~KeeGN~~f--K~-Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny--------------Rs~l~Dcs~al 146 (390)
T KOG0551|consen 84 YKEEGNEYF--KE-KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY--------------RSALNDCSAAL 146 (390)
T ss_pred HHHHhHHHH--Hh-hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 357788888 55 89999999999999987666654 34455555555554 59999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc----cCCCChhHHHHHHH
Q psy9159 107 ELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ----MAPKDFTLYSLKGR 165 (259)
Q Consensus 107 ~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~----l~P~~~~~~~~lG~ 165 (259)
.++|++..+++.-+.|+..+..+..+.+-.+........-+.+++ +.|++...+...-.
T Consensus 147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~ 209 (390)
T KOG0551|consen 147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERD 209 (390)
T ss_pred hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHH
Confidence 999999999999999999888776554433332222222233333 46777665554443
No 237
>KOG2610|consensus
Probab=97.08 E-value=0.012 Score=50.85 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHcc-CCCChhHHHHHHHHHHHhhcc
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM-APKDFTLYSLKGRYQYEISKL 173 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l-~P~~~~~~~~lG~~~~~~~~~ 173 (259)
+.+|....++.|.-.|++--++..--.++...|+..+. +..++|.+-. +|+.|-+-|.-|..-|-+..
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~----------k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E- 187 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGK----------KNAIEKIIPKWNADLPCYSYVHGMYAFGLEE- 187 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhh----------hhHHHHhccccCCCCcHHHHHHHHHHhhHHH-
Confidence 44777788899999999988877777777777776543 3456777765 88887776776754443322
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
.|-|++|.+.-++|+++|| +..-+...++.++...|+++++.+.+.+-
T Consensus 188 ----------------~g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 188 ----------------CGIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ----------------hccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 3889999999999999999 56667778899999999999999998775
No 238
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.07 E-value=0.0012 Score=35.35 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.++..+|.++..+|++++|+.+++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46789999999999999999999999999875
No 239
>KOG0551|consensus
Probab=97.06 E-value=0.0088 Score=51.49 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCCCChh----HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhH
Q psy9159 140 VVFRDQMNKAIQMAPKDFT----LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ 215 (259)
Q Consensus 140 ~~a~~~~~kAl~l~P~~~~----~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~ 215 (259)
..|...|.++|+.+-.|+. .|.+.+.+.+.+ |+|..|+.-..+|+.++| .+..++
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--------------------~NyRs~l~Dcs~al~~~P-~h~Ka~ 156 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--------------------GNYRSALNDCSAALKLKP-THLKAY 156 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--------------------HHHHHHHHHHHHHHhcCc-chhhhh
Confidence 3677899999987666554 355555554443 789999999999999999 678888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 216 LLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 216 ~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
..=|.|+..+.++++|..|++..++++
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 888999999999999999999998876
No 240
>KOG1586|consensus
Probab=97.05 E-value=0.1 Score=43.09 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcH------HhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 191 PTAEDAIANCLKAEELAPAPWK------ENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~------~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
++|.+||+.|++.....-+++. ...+.-|.|++...+.-.+...+++-.+++|...+.+++-
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 7899999999998876542221 2356677888888999999999999999999999887754
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.065 Score=45.62 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHH---H--HHHHh
Q psy9159 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG---R--YQYEI 170 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG---~--~~~~~ 170 (259)
.+|...+..++..+|++.++...++.++...|+.+.+ +..|...|.+...--..| + ++.+.
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A--------------~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAA--------------QAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHH--------------HHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999887633 444666676554433333 1 11111
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.. .++ +..+++.+.-+| ++..+.+.+|..+...|+.++|.+.+-..+..+-...
T Consensus 217 a~-----------------~~~----~~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 217 AA-----------------TPE----IQDLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred hc-----------------CCC----HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 11 122 345677788899 7899999999999999999999999988887754433
No 242
>KOG3081|consensus
Probab=97.05 E-value=0.15 Score=42.82 Aligned_cols=132 Identities=12% Similarity=-0.082 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
+...++-|....++...++.+. ....+|..+..+.--. .+ ..++.-.|++.=+.-|-.+......+.++..+
T Consensus 149 k~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gg---ek---~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGG---EK---IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccc---hh---hhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence 3445667777777777777553 3334444443322111 01 12344566666665666666666666666653
Q ss_pred hccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHH-HHHHHHHhcCCCCCccch
Q psy9159 171 SKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKA-VQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA-~~~~~kal~l~p~~~~~~ 249 (259)
|+|++|...++.|+.-+| ..+....++-.+-..+|.-.++ .+.+.+.....|..+-.+
T Consensus 221 --------------------~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 221 --------------------GRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred --------------------cCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 899999999999999999 6799999988888888876665 556677777888777654
Q ss_pred hh
Q psy9159 250 DL 251 (259)
Q Consensus 250 ~~ 251 (259)
..
T Consensus 280 ~~ 281 (299)
T KOG3081|consen 280 HL 281 (299)
T ss_pred HH
Confidence 43
No 243
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.01 E-value=0.089 Score=44.98 Aligned_cols=163 Identities=17% Similarity=0.077 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+++..|...+.++-.. .++...+.++..|....... .+..+|..+++ ...+..++.+.+.+|.++.
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~----------~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~ 120 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVS----------RDKTKAADWYR--CAAADGLAEALFNLGLMYA 120 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCcc----------ccHHHHHHHHH--HHhhcccHHHHHhHHHHHh
Confidence 7899999999988662 33467788888887654332 12568899888 4566778889999998876
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD-FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kA 203 (259)
.-. ++. .+..++...|++|.+..-.. ..+.+.+|.++..-. .. ....-+...|+.+|.+|
T Consensus 121 ~G~---gv~---~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~------------~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 121 NGR---GVP---LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA------------LAVAYDDKKALYLYRKA 181 (292)
T ss_pred cCC---Ccc---cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh------------hcccHHHHhHHHHHHHH
Confidence 432 111 12336788999997774443 345888888775521 00 00012346899999999
Q ss_pred HhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCCC
Q psy9159 204 EELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 204 i~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~p 243 (259)
-... .+.+...+|.+|..- .+..+|..||++|.+...
T Consensus 182 a~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 182 AELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8876 367889999888663 489999999999999875
No 244
>KOG1585|consensus
Probab=96.93 E-value=0.065 Score=44.49 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=102.3
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
.+.+.++...|+ .. .+|++|...+.++++-..+|. .||-.|++|-+.+... ..++.+.++..++++|..+
T Consensus 31 as~yekAAvafR-nA-k~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLa-------ke~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFR-NA-KKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLA-------KELSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHH-hh-ccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHH
Confidence 356788888885 44 899999999999998777664 4567888888777654 4566778888888888776
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHH---HHHHHHHHHhhccchHHHHHHH
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLY---SLKGRYQYEISKLSFFERKIAV 182 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~---~~lG~~~~~~~~~~~~~~~~~~ 182 (259)
.-++...- .-+.++.+.++..+- ..=.++++.|++++.+--.+. .+. -..|+++.+.
T Consensus 101 Y~E~Gspd-tAAmaleKAak~len----v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl------------ 163 (308)
T KOG1585|consen 101 YVECGSPD-TAAMALEKAAKALEN----VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL------------ 163 (308)
T ss_pred HHHhCCcc-hHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh------------
Confidence 53321110 122333333321100 001245667777765533322 222 2233333332
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHhh----CCCCcHHhHHHHHHH--HHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 183 LIVSDLDEPTAEDAIANCLKAEEL----APAPWKENQLLIAKC--YIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 183 ~~~~~~~~g~~~eAi~~~~kAi~l----~P~~~~~~~~~la~~--~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.+|+||-..+.|-..+ +. .+......+|.+ |....++..|..+++..-+++.-
T Consensus 164 --------~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 164 --------EKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred --------HHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 4566666666654332 22 112222334433 33444777888887777666544
No 245
>KOG0529|consensus
Probab=96.92 E-value=0.18 Score=44.74 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN 126 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~ 126 (259)
-.++++.-.+.+..+|+-..+|.-.-.++...-.. .+.+..++...+++-+.+...++..+|+...+|+...+++...
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~--~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~ 122 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR--AQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKN 122 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh--hcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhC
Confidence 34667777888888888777764433333322110 0134567777899999999999999999999999999999988
Q ss_pred hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 127 GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
+...-. .-.+..+++++.||.|-.+|...=.+...... +.+...+=+++.+++|.-
T Consensus 123 p~~~~~--------~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~----------------~~~~~~~El~ftt~~I~~ 178 (421)
T KOG0529|consen 123 PHSDWN--------TELQLCEKALKQDPRNFHAWHYRRFVVEQAER----------------SRNLEKEELEFTTKLIND 178 (421)
T ss_pred CCchHH--------HHHHHHHHHHhcCcccccchHHHHHHHHHHhc----------------ccccchhHHHHHHHHHhc
Confidence 765211 22467799999999999998776544322211 113356668899999999
Q ss_pred CCCCcHHhHHHHHHHHHHh------CC------HHHHHHHHHHHhcCCCCCcc
Q psy9159 207 APAPWKENQLLIAKCYIEA------GE------YAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 207 ~P~~~~~~~~~la~~~~~~------g~------~~eA~~~~~kal~l~p~~~~ 247 (259)
++ .|..+|.++..++..+ |+ ...-++.-..|+-.+|.+..
T Consensus 179 nf-SNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 179 NF-SNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred cc-hhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 99 7788888888777632 31 34456677777778877654
No 246
>KOG1941|consensus
Probab=96.87 E-value=0.016 Score=50.65 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh------h
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNS-----NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF------T 158 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~-----~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~------~ 158 (259)
++...+.+++.+.+-.+++-...+ .++..++.++..++.+. ++.+.|++|++.--++. .
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq----------~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQ----------KALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHH----------HHHHHHHHHHHHhhccCCceeeee
Confidence 455667788888888887765554 23333444444444444 56778888887644433 4
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC----CCc-----HHhHHHHHHHHHHhCCHH
Q psy9159 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP----APW-----KENQLLIAKCYIEAGEYA 229 (259)
Q Consensus 159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P----~~~-----~~~~~~la~~~~~~g~~~ 229 (259)
++..||.++..+ .++++|.-+..+|.++-- +++ ..+.+.++.++..+|+..
T Consensus 164 vcv~Lgslf~~l--------------------~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg 223 (518)
T KOG1941|consen 164 VCVSLGSLFAQL--------------------KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG 223 (518)
T ss_pred hhhhHHHHHHHH--------------------HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 678888877765 568999999999988742 022 234678899999999999
Q ss_pred HHHHHHHHHhcCC
Q psy9159 230 KAVQWLDKAKAIP 242 (259)
Q Consensus 230 eA~~~~~kal~l~ 242 (259)
.|.++.+++.++.
T Consensus 224 dA~e~C~Ea~kla 236 (518)
T KOG1941|consen 224 DAMECCEEAMKLA 236 (518)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987654
No 247
>KOG3824|consensus
Probab=96.87 E-value=0.0028 Score=54.07 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=59.7
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
..+..+. .+ |+.++|..+|+.++...|.+|+++..+|...-.-.+. -+|-.+|-+|+.++|.|
T Consensus 121 ~~A~~~~--~~-Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i--------------v~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 121 KAAGRSR--KD-GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI--------------VEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHHH--hc-cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh--------------HhhhhhhheeeeeCCCc
Confidence 4444555 56 9999999999999999999999998888776554443 49999999999999999
Q ss_pred hHHHHHHHHH
Q psy9159 113 SNTQKWYGIC 122 (259)
Q Consensus 113 ~~~~~~la~~ 122 (259)
.+++.+-+..
T Consensus 184 seALvnR~RT 193 (472)
T KOG3824|consen 184 SEALVNRART 193 (472)
T ss_pred hHHHhhhhcc
Confidence 9998766544
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.83 E-value=0.01 Score=45.37 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
|++++|+..+++++.++| .+-..|..+-.+|...|+..+|++.|++...
T Consensus 76 ~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 889999999999999999 7788999999999999999999999998744
No 249
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.78 E-value=0.017 Score=40.54 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=53.9
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc--HHhHHHHHH
Q psy9159 143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW--KENQLLIAK 220 (259)
Q Consensus 143 ~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~--~~~~~~la~ 220 (259)
...++++++.+|++..+.+.++..+... |++++|++.+...++.+| ++ -.+.-.|-.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~--------------------g~~e~Al~~Ll~~v~~dr-~~~~~~ar~~ll~ 66 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA--------------------GDYEEALDQLLELVRRDR-DYEDDAARKRLLD 66 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHCC-T-TCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCc-cccccHHHHHHHH
Confidence 4667888999999999999999888764 889999999999999988 44 355666777
Q ss_pred HHHHhCCHHHHHHHHHHH
Q psy9159 221 CYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 221 ~~~~~g~~~eA~~~~~ka 238 (259)
++..+|.-+.-..-|++-
T Consensus 67 ~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 67 IFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHH-TT-HHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHH
Confidence 777777766555555543
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.73 E-value=0.1 Score=45.55 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhchhhHHHHHhc
Q psy9159 63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN----NSNTQKWYGICVGANGQFQSLKEKIKC 138 (259)
Q Consensus 63 ~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~----~~~~~~~la~~~~~~~~~~~~~~~~~~ 138 (259)
.....|..++.+....|+ ++-|...+.++...++. .+.+....+.++...|+...+...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred HHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334445555555555554 45888888888876622 456666778888888877654433322
Q ss_pred HHHHHHHHHHHHc-----------------cCCC---------ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159 139 GVVFRDQMNKAIQ-----------------MAPK---------DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT 192 (259)
Q Consensus 139 ~~~a~~~~~kAl~-----------------l~P~---------~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 192 (259)
... ..+.+-+. ..+. -+.++..+|.|.... . .....+.
T Consensus 210 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~-------------~-~~~~~~~ 273 (352)
T PF02259_consen 210 LLK--CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL-------------Y-SKLSSES 273 (352)
T ss_pred HHH--HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh-------------c-ccccccc
Confidence 110 01111000 0000 112344444443332 0 0112478
Q ss_pred HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCH-----------------HHHHHHHHHHhcCCCC
Q psy9159 193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEY-----------------AKAVQWLDKAKAIPVV 244 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~-----------------~eA~~~~~kal~l~p~ 244 (259)
.++++..|++|++++| .+..+|..+|..+...=+. ..|++.|-+++.+.|.
T Consensus 274 ~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 274 SDEILKYYKEATKLDP-SWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999 7888999999887666221 3489999999999877
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.71 E-value=0.011 Score=37.00 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159 66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120 (259)
Q Consensus 66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la 120 (259)
+.++.+|..+..+|++. +|+.+++.+|+++|+|..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~--------------~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYE--------------KARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHH--------------HHHHHHHHHHhhCCCcHHHHHHHH
Confidence 45788999999999875 999999999999999998764443
No 252
>KOG2047|consensus
Probab=96.69 E-value=0.22 Score=46.75 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH---------H
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN---------T 115 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~---------~ 115 (259)
|+.+.|...++++.+..=..++ -|+.+++..+.- +-+.+.++.|+...++|... |.++. +
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~---dLa~vw~~waem-------Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVE---DLAEVWCAWAEM-------ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPV 469 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchH---HHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcH
Confidence 5555555555555554332222 233444433321 24567788999999888654 55533 1
Q ss_pred HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHH
Q psy9159 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED 195 (259)
Q Consensus 116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e 195 (259)
...+-..+..-..+....+..+....-+..|++.|.|---.|..-.+.|.++-+. .-+++
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh--------------------~yfee 529 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--------------------KYFEE 529 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------------HHHHH
Confidence 1111111110111111122233333456788899988888888888888766443 22466
Q ss_pred HHHHHHHHHhhCCC-CcHHhHHH-HH--HHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 196 AIANCLKAEELAPA-PWKENQLL-IA--KCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 196 Ai~~~~kAi~l~P~-~~~~~~~~-la--~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
|.+.|+|.|.+-|- ...+.|.. |- .......+.+.|...|++|++.-|
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 66666666665430 11122221 11 111112245566666666665444
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.69 E-value=0.0047 Score=34.06 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
++++++|.++...|+.. +|+..+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~--------------~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYD--------------EAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHH--------------HHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHH--------------HHHHHHHHHHHHCcCC
Confidence 57899999999988865 9999999999999974
No 254
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.66 E-value=0.011 Score=41.55 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 195 eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
..+..++++++.+| ++..+.+.+|..++..|++++|++.+-.++..+++..++
T Consensus 6 ~~~~al~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~ 58 (90)
T PF14561_consen 6 PDIAALEAALAANP-DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD 58 (90)
T ss_dssp HHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC
T ss_pred ccHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc
Confidence 34678899999999 778999999999999999999999999999999887543
No 255
>KOG1550|consensus
Probab=96.66 E-value=0.081 Score=49.76 Aligned_cols=156 Identities=17% Similarity=0.036 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159 45 DDKAKAYNLTMELNN-------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK 117 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~-------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~ 117 (259)
++.+.|+..++.+.. .. ++.+.+.+|.+|....... .. +.+.|+.++.++-... ++.+.+
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~--------~~-d~~~A~~~~~~aA~~g--~~~a~~ 329 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVE--------KI-DYEKALKLYTKAAELG--NPDAQY 329 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCc--------cc-cHHHHHHHHHHHHhcC--CchHHH
Confidence 689999999998876 32 5567788999999865332 00 4568999999998876 566778
Q ss_pred HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHH
Q psy9159 118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI 197 (259)
Q Consensus 118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi 197 (259)
.+|.++..-. . -.+..+|.++|..|. .-.+..+.+.+|.+|.. |.....+.+.|.
T Consensus 330 ~lg~~~~~g~-~------~~d~~~A~~yy~~Aa--~~G~~~A~~~la~~y~~----------------G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 330 LLGVLYETGT-K------ERDYRRAFEYYSLAA--KAGHILAIYRLALCYEL----------------GLGVERNLELAF 384 (552)
T ss_pred HHHHHHHcCC-c------cccHHHHHHHHHHHH--HcCChHHHHHHHHHHHh----------------CCCcCCCHHHHH
Confidence 8888876443 1 112235677887774 44688899999987754 222246789999
Q ss_pred HHHHHHHhhCCCCcHHhHHHHHHHHHHh-CCHHHHHHHHHHHhcC
Q psy9159 198 ANCLKAEELAPAPWKENQLLIAKCYIEA-GEYAKAVQWLDKAKAI 241 (259)
Q Consensus 198 ~~~~kAi~l~P~~~~~~~~~la~~~~~~-g~~~eA~~~~~kal~l 241 (259)
.+|++|.+.++ +.+...++..+... ++++.+.-.+....++
T Consensus 385 ~~~k~aA~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 385 AYYKKAAEKGN---PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHccC---hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 99999999874 44455556555444 6666665555444443
No 256
>KOG4340|consensus
Probab=96.63 E-value=0.07 Score=45.61 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC--------------
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD-------------- 156 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~-------------- 156 (259)
+.+.+++|+.-|+.|++...-++..-++++.+..+.+++..+.+.+. +..++.++-.|..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iS------EIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHIS------EIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHH------HHHHhhhhcCCccCccceeccCchhcc
Confidence 34556799999999999988888888888888888888876654432 4446666666541
Q ss_pred --hh---------HHHHHHHHHHHhhccchHHHHHHHHHhcCCC-------------------CCcHHHHHHHHHHHHhh
Q psy9159 157 --FT---------LYSLKGRYQYEISKLSFFERKIAVLIVSDLD-------------------EPTAEDAIANCLKAEEL 206 (259)
Q Consensus 157 --~~---------~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~g~~~eAi~~~~kAi~l 206 (259)
+. +......++++.++.+ +...++...|| .+++.+...-+.=.+++
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~e----AA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYE----AAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHH----HHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc
Confidence 11 1222223333333321 11122222222 36677777777778888
Q ss_pred CCCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159 207 APAPWKENQLLIAKCYIEAGEYAKAVQWL 235 (259)
Q Consensus 207 ~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 235 (259)
+| ...+..-++-.+|++..=|+-|...+
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 88 77788888888888877777665543
No 257
>KOG1941|consensus
Probab=96.57 E-value=0.094 Score=45.99 Aligned_cols=171 Identities=12% Similarity=0.048 Sum_probs=103.3
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHH---HHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRL---AKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---a~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka 105 (259)
+.-++.+-+++ .. .++++|+....+.+..-.+.-+-+..+ ..+...+|.+. +.+.-|.....-+
T Consensus 7 k~q~~~g~~Ly--~s-~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~----------~mL~~a~sqi~~a 73 (518)
T KOG1941|consen 7 KKQIEKGLQLY--QS-NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYK----------EMLKFAVSQIDTA 73 (518)
T ss_pred HHHHHHHHhHh--cC-chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHH----------HHHHHHHHHHHHH
Confidence 34567788888 67 899999999998887543333222222 33344444432 2223333333334
Q ss_pred HHhCCCC--hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh-----hHHHHHHHHHHHhhccchHHH
Q psy9159 106 MELAPNN--SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF-----TLYSLKGRYQYEISKLSFFER 178 (259)
Q Consensus 106 l~~~P~~--~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~-----~~~~~lG~~~~~~~~~~~~~~ 178 (259)
.+.+-.. -+++.+++.....+.++. +.+.+-+..+.+..+.+ .++..+|+.+..+
T Consensus 74 ~~~~ds~~~~ea~lnlar~~e~l~~f~----------kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl-------- 135 (518)
T KOG1941|consen 74 RELEDSDFLLEAYLNLARSNEKLCEFH----------KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL-------- 135 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH--------
Confidence 3333221 122333333333333333 34455555566554444 3455566666554
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 179 KIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 179 ~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
+.++.+++.|++|+...-+ --.+++..||..+..++++++|.-+..||.++-
T Consensus 136 ------------s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 136 ------------SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred ------------HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 6689999999999987431 113578999999999999999999999998864
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.55 E-value=0.0048 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.129 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
+|..||.+|... |++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~--------------------g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQ--------------------GDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHC--------------------T-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhc
Confidence 478899999875 88999999999976654
No 259
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.55 E-value=0.14 Score=44.67 Aligned_cols=121 Identities=9% Similarity=-0.125 Sum_probs=79.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhchhh--HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH
Q psy9159 100 EYAKKAMELAPNNSNTQKWYGICVGANGQFQS--LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE 177 (259)
Q Consensus 100 ~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~--~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~ 177 (259)
.-+.+.+.-+|+|.++|..+............ .......++.-+..|++||+.+|++...+..+=....+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~------- 78 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV------- 78 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------
Confidence 34788899999999999888776655543222 112222233446889999999998887766655444433
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH-HHHHHhC--CHHHHHHHHHHHhcC
Q psy9159 178 RKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA-KCYIEAG--EYAKAVQWLDKAKAI 241 (259)
Q Consensus 178 ~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la-~~~~~~g--~~~eA~~~~~kal~l 241 (259)
..-++..+-+++++..+| ++...|...- ....... .+.+....|.++++.
T Consensus 79 -------------~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 79 -------------WDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred -------------CCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 346777888999999999 5666554322 2222222 466777777777663
No 260
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.54 E-value=0.08 Score=38.43 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
|+++|.+++.+.| +.+...+.||.=+-...-|++++.-.++++..
T Consensus 63 sve~~s~a~~Lsp-~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSP-DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccCh-hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4556666666666 44555555555555555556666666665553
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.42 E-value=0.0046 Score=38.81 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159 214 NQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253 (259)
Q Consensus 214 ~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~ 253 (259)
..+.+|..+.++|++++|.++.+.+++++|+|.....+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4577888889999999999999999999988876655543
No 262
>KOG3824|consensus
Probab=96.37 E-value=0.01 Score=50.78 Aligned_cols=57 Identities=23% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
.|+.++|...|+.|+.++| .++++...+|......++.-+|-.+|-+|+.++|.|.+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAP-TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred ccchHHHHHHHHHHHhcCC-CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4999999999999999999 78999999999999999999999999999999999875
No 263
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.17 Score=46.89 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHH--HHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRL--AKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC 122 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~ 122 (259)
+.-.-++..+...+..+|.+++++... ...+...+.. ..+......++..+|++..++.+++.+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~L~~a 110 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADS--------------TLAFLAKRIPLSVNPENCPAVQNLAAA 110 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccc--------------hhHHHHHhhhHhcCcccchHHHHHHHH
Confidence 344447777888888999999986443 3333334433 267778889999999999999999998
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK 202 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~k 202 (259)
+...+....+ +....+.+....|++..+...+-++|. ++++ ... .|+..++....++
T Consensus 111 le~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~----------l~~~~~~~~~l~~ 167 (620)
T COG3914 111 LELDGLQFLA---------LADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKL----------LGRTAEAELALER 167 (620)
T ss_pred HHHhhhHHHH---------HHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHH----------hccHHHHHHHHHH
Confidence 8775544321 234456688999999988777755443 3221 000 2888999999999
Q ss_pred HHhhCCCCcHHhHHHHHHH
Q psy9159 203 AEELAPAPWKENQLLIAKC 221 (259)
Q Consensus 203 Ai~l~P~~~~~~~~~la~~ 221 (259)
+.++.| .++++...+...
T Consensus 168 ~~d~~p-~~~~~~~~~~~~ 185 (620)
T COG3914 168 AVDLLP-KYPRVLGALMTA 185 (620)
T ss_pred HHHhhh-hhhhhHhHHHHH
Confidence 999999 666665544444
No 264
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.34 E-value=0.0081 Score=49.21 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
.++.+-|.+.|.+|+++-| .|...|+.+|....+.|+++.|...|++.++++|.+.-
T Consensus 8 ~~D~~aaaely~qal~lap-~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAP-EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCc-hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4889999999999999999 89999999999999999999999999999999987643
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.33 E-value=0.18 Score=37.16 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh
Q psy9159 91 SEKYILQGIEYAKKAMELAPN------------NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~------------~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~ 158 (259)
..+.+++|..-|++|++...+ ++.+|.+|+.++..+|.|+...... ..++.++.+==+|+-+...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA---~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA---DRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH---HHHHHHHHHH--TTSTHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH---HHHHHHHhhccccccccch
Confidence 345678999999999987644 4567888999999999998655433 3556777766667766655
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 159 ~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
.|.. .++.+ +++ +-+ +|+.++|+..|+.+.++
T Consensus 98 lWIa--aVfsr---------a~A--l~~---~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIA--AVFSR---------AVA--LEG---LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHH--HHHHH---------HHH--HHH---TT-HHHHHHHHHHHHHH
T ss_pred hHHH--HHHHH---------HHH--HHh---cCChHHHHHHHHHHHHH
Confidence 5533 22221 111 111 49999999999999875
No 266
>KOG2396|consensus
Probab=96.27 E-value=0.058 Score=49.00 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchH
Q psy9159 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF 176 (259)
Q Consensus 97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~ 176 (259)
.=...|++|...-|.++..|..+.......+.+. +....+.+++..+|+++..|..-+.|.++.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~----------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~---- 154 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG----------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL---- 154 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc----
Confidence 4457899999999999988876655444444333 34578899999999999999999999988632
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHH
Q psy9159 177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216 (259)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~ 216 (259)
+.+-|...|.+++..+| +.+..|.
T Consensus 155 ---------------ni~saRalflrgLR~np-dsp~Lw~ 178 (568)
T KOG2396|consen 155 ---------------NIESARALFLRGLRFNP-DSPKLWK 178 (568)
T ss_pred ---------------chHHHHHHHHHHhhcCC-CChHHHH
Confidence 38999999999999999 7776543
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.25 E-value=0.64 Score=39.69 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=86.0
Q ss_pred CCcCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhhchhcccC-cHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-
Q psy9159 42 GKKDDKAKAYNLTMELNNKQ-PNDPDVLYRLAKACHCLYDIKRREN-DKEASEKYILQGIEYAKKAMELAPNNSNTQKW- 118 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~~~~-~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~- 118 (259)
.. |+++.|..++.++-... .-+|+..-.++.+++..|...-... +.+.....+.+|.+++++.-+.+...+++.-.
T Consensus 5 ~~-~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQ-GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hh-CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45 99999999999997665 6677777889999998886442222 33444555555555554433334444444222
Q ss_pred ------HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC-CCC
Q psy9159 119 ------YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL-DEP 191 (259)
Q Consensus 119 ------la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~g 191 (259)
++.++...+..++ ..++...++-+-.-.|+.+..+...=.++...++.+.+++.+..++.... ...
T Consensus 84 ~~iL~~La~~~l~~~~~~~-------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~ 156 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYES-------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES 156 (278)
T ss_pred HHHHHHHHHHHHcCCChHH-------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc
Confidence 2333322233222 12344555555566788777765544444443333333333333333222 234
Q ss_pred cHHHHHHHHHHHHhhCC
Q psy9159 192 TAEDAIANCLKAEELAP 208 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P 208 (259)
.++.++.++.+..+.+|
T Consensus 157 ~~~~~l~~i~~l~~~~~ 173 (278)
T PF08631_consen 157 NFDSILHHIKQLAEKSP 173 (278)
T ss_pred hHHHHHHHHHHHHhhCc
Confidence 45555555555555544
No 268
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.072 Score=49.23 Aligned_cols=121 Identities=12% Similarity=-0.094 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159 97 QGIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 97 ~A~~~~~kal~~~P~~~~~~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~ 174 (259)
-|+..+...+.++|.++..+... ...+...+... .+.-....++..||++..+..+||......+
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~--- 115 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADST----------LAFLAKRIPLSVNPENCPAVQNLAAALELDG--- 115 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccch----------hHHHHHhhhHhcCcccchHHHHHHHHHHHhh---
Confidence 46677777788999999875333 33333333332 2334567889999999999999998654421
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH------HHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI------AKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l------a~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
+.+.-++.+-+.+....| ++......+ +..+..+|+..++.....++..+.|.++.
T Consensus 116 ----------------~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 116 ----------------LQFLALADISEIAEWLSP-DNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred ----------------hHHHHHHHHHHHHHhcCc-chHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 335555666666999999 777776666 99999999999999999999999998864
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.02 E-value=0.013 Score=30.99 Aligned_cols=33 Identities=45% Similarity=0.689 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 66 DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 66 ~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.+++.+|.++..++++. +|...++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~--------------~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYD--------------EALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHH--------------HHHHHHHHHHccCCCC
Confidence 56788999999988875 9999999999999864
No 270
>KOG4507|consensus
Probab=96.01 E-value=0.064 Score=49.69 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccc
Q psy9159 96 LQGIEYAKKAMELAPNNSNT-QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~-~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~ 174 (259)
-.|...+++|+...|....+ ..+++.++...+... +|-..+..+|.++-..|..++.+|+.+.-+
T Consensus 624 ~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~----------da~~~l~q~l~~~~sepl~~~~~g~~~l~l---- 689 (886)
T KOG4507|consen 624 TFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL----------DATKLLLQALAINSSEPLTFLSLGNAYLAL---- 689 (886)
T ss_pred HHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc----------cHHHHHHHHHhhcccCchHHHhcchhHHHH----
Confidence 46677777777777654433 345555555444322 344556666777766677777777766554
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHH
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~l 218 (259)
.+.+.|+++|+.|++++| +++.....|
T Consensus 690 ----------------~~i~~a~~~~~~a~~~~~-~~~~~~~~l 716 (886)
T KOG4507|consen 690 ----------------KNISGALEAFRQALKLTT-KCPECENSL 716 (886)
T ss_pred ----------------hhhHHHHHHHHHHHhcCC-CChhhHHHH
Confidence 456777777777777777 555544443
No 271
>KOG2047|consensus
Probab=95.92 E-value=1 Score=42.57 Aligned_cols=166 Identities=13% Similarity=0.040 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHhh-cCCCC-----HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC----hH
Q psy9159 45 DDKAKAYNLTMELNN-KQPND-----PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN----SN 114 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~-~~p~~-----~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~----~~ 114 (259)
|+..+-+..|.++++ .+|.- ...|..+|+.|-..|+. +.|+..+++|+...=.- +.
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l--------------~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL--------------DDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH--------------HHHHHHHHHhhcCCccchHHHHH
Confidence 778888888888865 45543 34566677777766665 49999999999876332 22
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChh-HHHH-----HHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159 115 TQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT-LYSL-----KGRYQYEISKLSFFERKIAVLIVSDL 188 (259)
Q Consensus 115 ~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~-~~~~-----lG~~~~~~~~~~~~~~~~~~~~~~~~ 188 (259)
+|...|..-.+-.++. .|....++|..+ |+++. .++. -.+++.+ ..++.+.--+...
T Consensus 427 vw~~waemElrh~~~~----------~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS-lkiWs~y~DleEs----- 489 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFE----------AALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS-LKIWSMYADLEES----- 489 (835)
T ss_pred HHHHHHHHHHhhhhHH----------HHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh-HHHHHHHHHHHHH-----
Confidence 3322222222222222 345666666544 44432 1111 1111111 1111111111111
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 189 DEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 189 ~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
.|.++.-...|.+.+++.= -.+..-.+.|..+....-+++|-+.|+|.+.+-|
T Consensus 490 -~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 490 -LGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred -hccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 2789999999999999875 4567778889999999999999999999999864
No 272
>KOG2396|consensus
Probab=95.87 E-value=0.19 Score=45.82 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q psy9159 48 AKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANG 127 (259)
Q Consensus 48 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~ 127 (259)
.+...+|+.++...+.|+..|.+...-+...+.+. +-...|.+++...|++++.|..-|.-....+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~--------------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG--------------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh--------------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 34566899999999999999887766555555554 6677899999999999998754443333222
Q ss_pred chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159 128 QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166 (259)
Q Consensus 128 ~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~ 166 (259)
. +...+...+.++|+.+|+++..|...=++
T Consensus 154 ~---------ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 154 L---------NIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred c---------chHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 1 12246788899999999999888665443
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.73 E-value=0.12 Score=39.31 Aligned_cols=61 Identities=11% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF 157 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~ 157 (259)
.+++|+..+++++.++|.+-.+|..+-.++...|+...+...+.. ....+.+-+-+.|+..
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~---~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER---YRRRLREELGIEPSPE 137 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH---HHHHHHHHHS----HH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH---HHHHHHHHhCcCcCHH
Confidence 456999999999999999999999999999999998866554443 3355555666767643
No 274
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.73 E-value=0.016 Score=33.66 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
..++.+||.+|..+|++++|++++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356889999999999999999999999874
No 275
>KOG0529|consensus
Probab=95.72 E-value=0.27 Score=43.72 Aligned_cols=144 Identities=7% Similarity=-0.049 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGA 125 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~ 125 (259)
-.++-+.+.+.+++.+|++..+|+-...++...+.. .+..-+..+++++++||.|..+|..--.+.+.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~ 157 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ 157 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------------hHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence 455667789999999999999999999998876654 24577999999999999999999776666665
Q ss_pred hhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhc-CCCCCcHHHHHHHHHHHH
Q psy9159 126 NGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVS-DLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~eAi~~~~kAi 204 (259)
...... ....-.++.+++|.-|+.|..+|+....+.-.+-.. -..| ..+......-++.-..|+
T Consensus 158 ~~~~~~------~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~---------~~~g~~~~~~~l~sEle~v~sai 222 (421)
T KOG0529|consen 158 AERSRN------LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK---------EADGNFMPKELLQSELEMVHSAI 222 (421)
T ss_pred Hhcccc------cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc---------cccCccCCHHHHHHHHHHHHHHH
Confidence 543311 001224677888999999999999988766433110 0001 011123566677888888
Q ss_pred hhCCCCcHHhHHH
Q psy9159 205 ELAPAPWKENQLL 217 (259)
Q Consensus 205 ~l~P~~~~~~~~~ 217 (259)
=.+| +...+|++
T Consensus 223 FTdp-~DqS~WfY 234 (421)
T KOG0529|consen 223 FTDP-EDQSCWFY 234 (421)
T ss_pred hcCc-cccceeee
Confidence 8999 45666666
No 276
>PRK10941 hypothetical protein; Provisional
Probab=95.66 E-value=0.072 Score=45.26 Aligned_cols=61 Identities=13% Similarity=-0.138 Sum_probs=56.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhh
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~ 251 (259)
.++++.|+.+.+..+.++| +.+.-+..+|.+|..+|.+..|...++..++.-|++++...+
T Consensus 194 ~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 194 EKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred cCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 5999999999999999999 667779999999999999999999999999999998875543
No 277
>KOG3364|consensus
Probab=95.48 E-value=0.058 Score=40.58 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHHHh-hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 190 EPTAEDAIANCLKAEE-LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~-l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
..+..+.|..++..++ -.|...-+..++||..+.++|+|++|+++.+..++.+|+|+....+-
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3678999999999997 55644445678899999999999999999999999999998765543
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.38 E-value=1.4 Score=38.32 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=92.7
Q ss_pred CCcCCHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC------
Q psy9159 42 GKKDDKAKAYNLTMELNNKQP----NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN------ 111 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~------ 111 (259)
.. |.++-|...+.++...++ ..|.+.+..++.....|+.. +|+..++..++....
T Consensus 158 k~-g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~--------------~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 158 KA-GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQE--------------EAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HC-CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHH--------------HHHHHHHHHHHHHhhhccccc
Confidence 55 999999999999887542 25777778888888888754 666666666651111
Q ss_pred ---------------------ChHHHHHHHHHHHHhhchhhHHH---HHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159 112 ---------------------NSNTQKWYGICVGANGQFQSLKE---KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ 167 (259)
Q Consensus 112 ---------------------~~~~~~~la~~~~~~~~~~~~~~---~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~ 167 (259)
........+.++...|++..... .......+...|.+|++++|+...+|+..|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 11112334555555555433220 113344678899999999999999999999988
Q ss_pred HHhhccchHHHH-HHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 168 YEISKLSFFERK-IAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
...-....-... ..... ...-...|+.+|-+|+.+.|
T Consensus 303 ~~~~~~~~~~~~~~~~~~----~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 303 DKLLESDPREKEESSQED----RSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHhhhhcccccchhH----HHHHHHHHHHHHHHHHhhCC
Confidence 765221110000 00000 00124779999999999999
No 279
>KOG2471|consensus
Probab=95.37 E-value=0.094 Score=47.63 Aligned_cols=128 Identities=15% Similarity=0.034 Sum_probs=82.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH-HHHhCCC------ChH--HHHHHHHHHHH
Q psy9159 55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK-AMELAPN------NSN--TQKWYGICVGA 125 (259)
Q Consensus 55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k-al~~~P~------~~~--~~~~la~~~~~ 125 (259)
+.+....-+++..++..+..++.+|++. +|...+.. -+...|. -.. .|.++|-+..+
T Consensus 230 K~vmn~a~~s~~~l~LKsq~eY~~gn~~--------------kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 230 KHVMNIAQDSSMALLLKSQLEYAHGNHP--------------KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcchH--------------HHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 3333344477777777888888888765 55544432 2333333 222 24557766666
Q ss_pred hhchhhHHHHHhcHHHHHHHHHHHHc---------cCC---------CChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159 126 NGQFQSLKEKIKCGVVFRDQMNKAIQ---------MAP---------KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSD 187 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~kAl~---------l~P---------~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 187 (259)
++.+.- +...|.+||+ +.| ..-...|+.|..+...
T Consensus 296 ~~~y~~----------~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~----------------- 348 (696)
T KOG2471|consen 296 LGCYQA----------SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS----------------- 348 (696)
T ss_pred hhhHHH----------HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc-----------------
Confidence 666642 2345555553 122 2345677777776653
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE 227 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~ 227 (259)
|+.-.|.+||.+++...- .++..|+.||.|.+...+
T Consensus 349 ---grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 349 ---GRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIMALQ 384 (696)
T ss_pred ---CCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence 889999999999999987 678999999999876543
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.36 E-value=0.5 Score=36.75 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++..++..++..+--.-|+.+++-..-|..+...|++. +|+..++...+..|..+.+-..++.|+.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~--------------dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWD--------------DALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHH--------------HHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 78999999999998899999999999999999999875 9999999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR 165 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~ 165 (259)
..++... ..+-.++++-.| ++.+......
T Consensus 90 ~~~D~~W-----------r~~A~evle~~~-d~~a~~Lv~~ 118 (160)
T PF09613_consen 90 ALGDPSW-----------RRYADEVLESGA-DPDARALVRA 118 (160)
T ss_pred HcCChHH-----------HHHHHHHHhcCC-ChHHHHHHHH
Confidence 9988753 345567777766 4444444443
No 281
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.35 E-value=0.55 Score=38.54 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC------ChhHHHHHHHHHHHhhccchHHHHHHHHHhc
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK------DFTLYSLKGRYQYEISKLSFFERKIAVLIVS 186 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~------~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~ 186 (259)
+..+..+|+++...++.+.-...+ ..|.+.|++|++-... .....+.+|.++.+.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl---~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl---------------- 178 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFL---RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL---------------- 178 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHH---HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh----------------
Confidence 344567788888888754333222 3567888888875543 246788899888775
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 187 DLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 187 ~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
|++++|+.+|.+.+...-........++|.
T Consensus 179 ----g~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 179 ----GNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 889999999999999654222124455443
No 282
>KOG1586|consensus
Probab=95.33 E-value=0.67 Score=38.41 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 191 PTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
.+++.||.+|+.|-+--..+- ...++-.|..-..++++.+|+..|+++....-+|+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 568888888888877532111 12356667777788999999999999977654443
No 283
>KOG1310|consensus
Probab=95.33 E-value=0.033 Score=50.86 Aligned_cols=91 Identities=11% Similarity=-0.075 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+....|+..|.+++...|.....+.+.+.++...+=. +..-.|+.-+..|+.++|-...+|++++.++.
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-----------~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-----------GDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-----------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 5778899999999999999999999998888764311 12238899999999999999999999999999
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~ 156 (259)
.++.+.. ++++..-+...+|++
T Consensus 457 el~r~~e----------al~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 457 ELTRYLE----------ALSCHWALQMSFPTD 478 (758)
T ss_pred HHhhHHH----------hhhhHHHHhhcCchh
Confidence 8887653 344444444556643
No 284
>KOG0985|consensus
Probab=95.32 E-value=0.9 Score=45.09 Aligned_cols=142 Identities=22% Similarity=0.184 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++.++|.++.++. +.|++|..+|.+..+.|... +|++.|-|| ++|..+...-.+..
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~--------------dAieSyika-----dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK--------------DAIESYIKA-----DDPSNYLEVIDVAS 1144 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH--------------HHHHHHHhc-----CCcHHHHHHHHHHH
Confidence 4555555555554 66899999999999888764 777777665 55555555556666
Q ss_pred HhhchhhHHHHHhcHHH-H---------H---------HHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHh
Q psy9159 125 ANGQFQSLKEKIKCGVV-F---------R---------DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIV 185 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-a---------~---------~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 185 (259)
+.|.++.....+..+++ . + ..++. +-..|+++..-.. |.-+++
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~-fi~gpN~A~i~~v-Gdrcf~---------------- 1206 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEE-FIAGPNVANIQQV-GDRCFE---------------- 1206 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHH-HhcCCCchhHHHH-hHHHhh----------------
Confidence 66666644322221110 0 0 00011 1123333333222 221222
Q ss_pred cCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 186 ~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.|.|+.|.-+|. +..+|..||.++..+|+|+.|+..-+||-+.
T Consensus 1207 ----~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1207 ----EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred ----hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 144555444432 3456788999999999999999999988543
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.96 E-value=0.83 Score=36.73 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=57.3
Q ss_pred HHHHHHHHHHccCCCCh----hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-HHhH
Q psy9159 141 VFRDQMNKAIQMAPKDF----TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-KENQ 215 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~----~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-~~~~ 215 (259)
+|...++.++.. |.+. .+-..|+++..+. |++++|+..+.-..+ + .+ +...
T Consensus 107 ~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~--------------------~k~D~AL~~L~t~~~--~-~w~~~~~ 162 (207)
T COG2976 107 KAEAQLKQALAQ-TKDENLKALAALRLARVQLQQ--------------------KKADAALKTLDTIKE--E-SWAAIVA 162 (207)
T ss_pred HHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHhcccc--c-cHHHHHH
Confidence 445555555433 3332 3456677777764 789999888765433 3 23 3345
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 216 LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 216 ~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
-..|.++...|+.++|+..|.++++.++.++.
T Consensus 163 elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 163 ELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 56899999999999999999999999855443
No 286
>KOG3617|consensus
Probab=94.95 E-value=0.82 Score=44.41 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
+.++..+.+++ ...|+.+.|+..|..+ .-|+.+-++.+.+|+.. +|.. |+.
T Consensus 912 ~~L~~WWgqYl--ES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~--------------kAa~-----iA~ 962 (1416)
T KOG3617|consen 912 ESLYSWWGQYL--ESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTD--------------KAAR-----IAE 962 (1416)
T ss_pred hHHHHHHHHHH--hcccchHHHHHHHHHh--------hhhhhheeeEeeccCch--------------HHHH-----HHH
Confidence 44556666666 4448888888888776 33566667777777654 5543 344
Q ss_pred CCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh--hHHHHH------------HHHHHHhhccc
Q psy9159 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF--TLYSLK------------GRYQYEISKLS 174 (259)
Q Consensus 109 ~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~--~~~~~l------------G~~~~~~~~~~ 174 (259)
+..|--+.+++|..+...|++..+......+ +.+..||++--.|. +-+.++ ++.|-+.|-
T Consensus 963 esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA----qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-- 1036 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYENDGDVVKAVKFFTRA----QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG-- 1036 (1416)
T ss_pred hcccHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--
Confidence 5677788889999998888877655444333 34444555433322 111111 122222110
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHH----------HHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLK----------AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~k----------Ai~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
.+.+++. +|. ..|.+.+|++.--+ |-+++|+..+.....-+..+....+|++|++.+-++.
T Consensus 1037 ~~~~AVm--LYH--kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1037 YAHKAVM--LYH--KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred hhhHHHH--HHH--hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111111 111 02334444433221 2346775556666667788888899999988765543
No 287
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.88 E-value=0.29 Score=40.20 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhCCC-----CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 193 AEDAIANCLKAEELAPA-----PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P~-----~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
+..|.+.|.+|++.... +.....+.+|.+...+|++++|+++|.+++.....+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 68899999999987641 1134577799999999999999999999999876665
No 288
>KOG4507|consensus
Probab=94.87 E-value=0.13 Score=47.84 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=73.3
Q ss_pred HHHHHHHHHHccCCCChh-HHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHH
Q psy9159 141 VFRDQMNKAIQMAPKDFT-LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA 219 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~-~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la 219 (259)
.|..++.+|+.+.|.... ....|+.+.... |-..+|-..+.+++.++- .-+-.++.+|
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~--------------------~~~~da~~~l~q~l~~~~-sepl~~~~~g 683 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHY--------------------GLHLDATKLLLQALAINS-SEPLTFLSLG 683 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHh--------------------hhhccHHHHHHHHHhhcc-cCchHHHhcc
Confidence 466788888888887553 456677666553 447889999999999986 5566788899
Q ss_pred HHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 220 KCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 220 ~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
..+..+.+.+.|++.++.|+.++|.+++-.+-+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 999999999999999999999999998755443
No 289
>KOG1310|consensus
Probab=94.81 E-value=0.14 Score=46.98 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=74.3
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
.++.+|.++++--|.....+-+.+.++.+.+= .|+.-.|+.-...|++++| ....+|+.|+.
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------------~~d~~~AlrDch~Alrln~-s~~kah~~la~ 453 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------------RGDSYLALRDCHVALRLNP-SIQKAHFRLAR 453 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------------cccHHHHHHhHHhhccCCh-HHHHHHHHHHH
Confidence 35678899999999998888888877765421 3777889999999999999 77889999999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 221 CYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 221 ~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
++..++++.+|++...-+....|.+.
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999998888888544
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.75 E-value=0.11 Score=44.66 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=63.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhchhh
Q psy9159 53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKW-YGICVGANGQFQS 131 (259)
Q Consensus 53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~-la~~~~~~~~~~~ 131 (259)
.+.++....|+++.+|...+......|. +.+--..|.+++++.|.|++.|.. -+.-+...+++.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~- 159 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE- 159 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH-
Confidence 4556666789999988766544333343 347778899999999999998743 122233334443
Q ss_pred HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159 132 LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166 (259)
Q Consensus 132 ~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~ 166 (259)
.+...+.++|++||.+|..|+..-++
T Consensus 160 ---------s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 160 ---------SSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred ---------HHHHHHHhhhccCCCCchHHHHHHHH
Confidence 45688999999999999999876654
No 291
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.47 E-value=0.07 Score=43.90 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQ 116 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~ 116 (259)
.. ++.+.|.++|.+++..-|+...-|+++|......|.. +.|...+++.++++|++..+-
T Consensus 7 ~~-~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~--------------daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 7 ES-GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF--------------DAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred cc-CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH--------------HHHHHHHHHHHcCCcccccch
Confidence 45 9999999999999999999999999999887777765 499999999999999986553
No 292
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.34 E-value=0.1 Score=44.85 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=64.7
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI 180 (259)
Q Consensus 101 ~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~ 180 (259)
.+.++-..-|+++..|..++.-....+.+. .....+..++..+|+|.+.|..-...-+..
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~----------~~~nI~~~~l~khP~nvdlWI~~c~~e~~~---------- 154 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYG----------EMKNIFAECLTKHPLNVDLWIYCCAFELFE---------- 154 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCCCceeeeeeccchhhh----------
Confidence 456677788999998877765554454443 345788999999999999998755433322
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159 181 AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL 217 (259)
Q Consensus 181 ~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~ 217 (259)
.++++.+...|.+++.++| .++..|..
T Consensus 155 ---------~ani~s~Ra~f~~glR~N~-~~p~iw~e 181 (435)
T COG5191 155 ---------IANIESSRAMFLKGLRMNS-RSPRIWIE 181 (435)
T ss_pred ---------hccHHHHHHHHHhhhccCC-CCchHHHH
Confidence 2789999999999999999 67776543
No 293
>PRK10941 hypothetical protein; Provisional
Probab=94.30 E-value=0.41 Score=40.73 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK 117 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~ 117 (259)
.+++++|+...+.++..+|++|.-+.-.|.+|.++|... .|+.-++..++..|+++.+..
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~--------------~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH--------------VALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--------------HHHHHHHHHHHhCCCchhHHH
Confidence 399999999999999999999999999999999999875 999999999999999998753
No 294
>KOG3617|consensus
Probab=94.27 E-value=1.6 Score=42.61 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=26.6
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.+..+.+.||.-|...|++.+|+..|.+|-..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999998887543
No 295
>KOG2471|consensus
Probab=94.17 E-value=0.3 Score=44.55 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--------ChhHHHHHH
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--------DFTLYSLKG 164 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--------~~~~~~~lG 164 (259)
..+..+..-.+.++.+.-+.+.+....+......|++..+.+.+ ..--|...|. ...+|.++|
T Consensus 220 ~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL---------~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 220 RNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLL---------LVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHH---------HhcccccccCccccchhhhheeecCcc
Confidence 34556666677788888889998888888888788876432211 1111233333 335688999
Q ss_pred HHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh---------hCC--------CCcHHhHHHHHHHHHHhCC
Q psy9159 165 RYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE---------LAP--------APWKENQLLIAKCYIEAGE 227 (259)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~---------l~P--------~~~~~~~~~la~~~~~~g~ 227 (259)
-+++++ |.|.-++.+|.+|++ +.| +......++.|..|...|+
T Consensus 291 cIh~~~--------------------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr 350 (696)
T KOG2471|consen 291 CIHYQL--------------------GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR 350 (696)
T ss_pred eEeeeh--------------------hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence 998886 668889999999985 112 1224568899999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy9159 228 YAKAVQWLDKAKAIP 242 (259)
Q Consensus 228 ~~eA~~~~~kal~l~ 242 (259)
.-.|.++|.+++..-
T Consensus 351 Pl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 351 PLLAFQCFQKAVHVF 365 (696)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999997654
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.16 E-value=4.4 Score=36.90 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
+|+|.++.-+-.=..+++| .+.++.-+|.|++..++|+||.+++.+.
T Consensus 475 qgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4999999999999999999 4899999999999999999999998753
No 297
>KOG1839|consensus
Probab=94.15 E-value=0.22 Score=50.18 Aligned_cols=171 Identities=11% Similarity=0.022 Sum_probs=97.3
Q ss_pred CchhHHHHHhhcCCcCCHHHHHH------HHH-HHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHH
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYN------LTM-ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA 102 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~ 102 (259)
+..+.+.... .. |.+++|.+ ++. ....+.|+.+..+..+++.+..+|+.. +....-.+|.-..
T Consensus 934 ~~~e~gq~~~--~e-~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~-------~Ai~~~~ka~ii~ 1003 (1236)
T KOG1839|consen 934 DSPEQGQEAL--LE-DGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQ-------EAIAQQRKACIIS 1003 (1236)
T ss_pred hhhhhhhhhh--cc-cchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchH-------HHHHhcccceeee
Confidence 4456665665 45 78887777 565 345578999999999999999988765 3333344455555
Q ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHH-----HccCCCCh---hHHHHHHHHHHHhhcc
Q psy9159 103 KKAMELAPN-NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKA-----IQMAPKDF---TLYSLKGRYQYEISKL 173 (259)
Q Consensus 103 ~kal~~~P~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kA-----l~l~P~~~---~~~~~lG~~~~~~~~~ 173 (259)
++.+.+++. ....+-+++.......+..++ ...+.++ +.-.|++| ..-.+++.++..+
T Consensus 1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~~a----------l~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v--- 1070 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLSGA----------LKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV--- 1070 (1236)
T ss_pred chhccCCCHHHHHHhhHHHHHHHhccCccch----------hhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---
Confidence 555566532 233333333333333333322 2223333 23344444 4456666665544
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-----C--cHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-----P--WKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-----~--~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
++++.|+++.+.|.+.+-+ . +...+..++..+...|++..|++..+....
T Consensus 1071 -----------------~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1071 -----------------EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 5689999999999886521 1 122345556666666666665555554443
No 298
>KOG1585|consensus
Probab=93.61 E-value=3.8 Score=34.33 Aligned_cols=124 Identities=12% Similarity=-0.031 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhh
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEIS 171 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~ 171 (259)
+++|...+.+|++-..+|.. +++-+..+...+... +.+....++...++||..+--.+. .+-..|+..
T Consensus 47 feKakdcLlkA~~~yEnnrs-lfhAAKayEqaamLa---ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA----- 117 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENNRS-LFHAAKAYEQAAMLA---KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA----- 117 (308)
T ss_pred HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH-----
Confidence 35888888888866655543 344444444333222 122233345567777765421111 111222221
Q ss_pred ccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+.++. ..+.++|+..|++++.+--++. .+-+...+.+|+.+.++++|-..+.|-..
T Consensus 118 ---------ak~le----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 118 ---------AKALE----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred ---------HHHhh----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 11221 1568999999999998743111 23366678999999999999888777543
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.40 E-value=0.16 Score=35.81 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHHHHhhCCCCc--------HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 191 PTAEDAIANCLKAEELAPAPW--------KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~--------~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
|+|.+|++.+.+..+...... ..+.+++|.++...|++++|+..+++|+++--...|.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 889999888888887643111 3457889999999999999999999999987665544
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.35 E-value=1.9 Score=33.56 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
++...+.-.--+-|..+..-..-|.++... |++.+|+..++...+-.| ..+.+.-.++.
T Consensus 28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r--------------------~~w~dA~rlLr~l~~~~~-~~p~~kALlA~ 86 (160)
T PF09613_consen 28 DAEALLDALRVLRPEFPELDLFDGWLHIVR--------------------GDWDDALRLLRELEERAP-GFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHhccCC-CChHHHHHHHH
Confidence 344566666679999999999999988774 889999999999988888 77888888999
Q ss_pred HHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 221 CYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 221 ~~~~~g~~~eA~~~~~kal~l~p 243 (259)
|+..+|+.+- ..+-+.+++..+
T Consensus 87 CL~~~~D~~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 87 CLYALGDPSW-RRYADEVLESGA 108 (160)
T ss_pred HHHHcCChHH-HHHHHHHHhcCC
Confidence 9999998543 222344444443
No 301
>KOG1914|consensus
Probab=93.31 E-value=6.9 Score=36.43 Aligned_cols=182 Identities=9% Similarity=-0.017 Sum_probs=95.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhH
Q psy9159 53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSL 132 (259)
Q Consensus 53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~ 132 (259)
.+++++.--+-.|++|+-.+.-....++.....++........+++...++++++---..... ++..+.++++.
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~------Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL------LYFALADYEES 340 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHH
Confidence 577777778889999988777666666533222333344555678888888888665433221 12222222211
Q ss_pred HHHHhcHHHHHHHHHHHHc---cCCCChhHHHHH----------HHHHHHhhccc---hHHHHHHHHHhcCCCCCcHHHH
Q psy9159 133 KEKIKCGVVFRDQMNKAIQ---MAPKDFTLYSLK----------GRYQYEISKLS---FFERKIAVLIVSDLDEPTAEDA 196 (259)
Q Consensus 133 ~~~~~~~~~a~~~~~kAl~---l~P~~~~~~~~l----------G~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~eA 196 (259)
.-.-...+....++++++. .+|+-.-+.++- ++.-+....-. -..=.++.++....-+++.+-|
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~A 420 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETA 420 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHH
Confidence 1110011122344444443 344433322211 01111100000 0000000111111115888888
Q ss_pred HHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 197 IANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 197 i~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.+.|+-.+.--| +.+..-......+..+++-..|...|++++..
T Consensus 421 frIFeLGLkkf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 421 FRIFELGLKKFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999998888888 55555555667788888888888888888876
No 302
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.10 E-value=0.23 Score=28.35 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHH--HHHHhcCCCCC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQW--LDKAKAIPVVS 245 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~--~~kal~l~p~~ 245 (259)
+.+..+|..+...|++++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567789999999999999999 55887777654
No 303
>KOG1258|consensus
Probab=93.06 E-value=7.8 Score=36.32 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-APNNSNTQKWYGIC 122 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~P~~~~~~~~la~~ 122 (259)
.|+++...-++++++---....++|++.++-....|+.. -|.....++.++ .|.-+..+...+..
T Consensus 310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~--------------~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 310 LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS--------------LANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh--------------HHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 499999999999999988899999999998887776643 333333333333 35566666666665
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHH---HHHHHHHhcC------------
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFE---RKIAVLIVSD------------ 187 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~~~~~------------ 187 (259)
....|++. .|..++++..+--|+...+-.....|....+.+.-.. .......-+.
T Consensus 376 ~e~~~n~~----------~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 376 EESNGNFD----------DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred HHhhccHH----------HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 55555555 3345555555444665555444444444433221000 0000000000
Q ss_pred ------CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhC
Q psy9159 188 ------LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAG 226 (259)
Q Consensus 188 ------~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g 226 (259)
.=.++-++|...+.++++..| ++...+..+-......+
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCC
Confidence 004777888888888888888 66666655555444443
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.93 E-value=0.16 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHH
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLD 236 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~ 236 (259)
.+.+.+|.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457889999999999999999876
No 305
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.73 E-value=5.6 Score=35.67 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=46.9
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDP--DVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELA 109 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~ 109 (259)
..++-.+| .. ++|..|.+.+..+...-|.+. +.+..+..+|.....+. +.+|.+.+++.+...
T Consensus 135 ~~~a~~l~--n~-~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd------------~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELF--NR-YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD------------HKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHH--hc-CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHh
Confidence 45566777 56 999999999999988634433 46777778887776654 568999888887663
No 306
>KOG4279|consensus
Probab=92.51 E-value=0.96 Score=43.41 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHhh---chhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNN-KQPNDPDVLYRLAKACHCLY---DIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~g---~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la 120 (259)
|+-.+|++..-.+++ ..|-.|+.+..-|++|-.+= ++ +..+..+.|+++|++|.+..|....+. +++
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~y--------tDa~s~~~a~~WyrkaFeveP~~~sGI-N~a 327 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNY--------TDAESLNHAIEWYRKAFEVEPLEYSGI-NLA 327 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCC--------cchhhHHHHHHHHHHHhccCchhhccc-cHH
Confidence 899999987666654 57888999999999997652 33 233456799999999999999877664 566
Q ss_pred HHHHHhh
Q psy9159 121 ICVGANG 127 (259)
Q Consensus 121 ~~~~~~~ 127 (259)
.++...|
T Consensus 328 tLL~aaG 334 (1226)
T KOG4279|consen 328 TLLRAAG 334 (1226)
T ss_pred HHHHHhh
Confidence 6665555
No 307
>KOG1914|consensus
Probab=92.45 E-value=4.2 Score=37.79 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=49.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhH
Q psy9159 55 MELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSL 132 (259)
Q Consensus 55 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~ 132 (259)
++-|+.+|.|.+.|+.|-+-+... - +++.++.|++-+..-|..+.+|..+........+|+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 678899999999998887766544 2 35888999999999999999887776666666666544
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.40 E-value=9.7 Score=38.22 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159 44 KDDKAKAYNLTMELNNKQP---NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120 (259)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la 120 (259)
+..|+.|+..|+++-...| +.-++.+++|.+......-. ++ ...+++|+.-|++.- --|.-|.-+...|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQ---GD----PRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhc---CC----hHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3899999999999999887 45788899999988655432 12 145778888887653 3455666666677
Q ss_pred HHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
.++.+++++++ -.+++.-|++--|++|..-...-.+.+++
T Consensus 560 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 560 LVYQRLGEYNE----------EIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHhhhHHH----------HHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 78888888763 35778888888888887655544444333
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.29 E-value=0.26 Score=29.51 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.++||.+|+.+|+.+.|.+.++.+++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999999999999999995
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.17 E-value=0.75 Score=37.18 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCC---cHHhHHHHHHHHHHhCCHHHH
Q psy9159 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP---WKENQLLIAKCYIEAGEYAKA 231 (259)
Q Consensus 155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~---~~~~~~~la~~~~~~g~~~eA 231 (259)
+++...+.||.+|.+ .+-++|+..+.+++++.+.+ ++++...|+.++..+|+++.|
T Consensus 139 ~t~elq~aLAtyY~k---------------------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYTK---------------------RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHc---------------------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 467888888887754 56899999999999986423 578899999999999999987
Q ss_pred H
Q psy9159 232 V 232 (259)
Q Consensus 232 ~ 232 (259)
=
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.06 E-value=2.1 Score=29.12 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=40.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH---HHHhhchh
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKA---CHCLYDIK 82 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~---~~~~g~~~ 82 (259)
..++++-.++ .+ .+.++|+..++++++..++.++-+..+|.+ |..+|.+.
T Consensus 8 ~~ie~GlkLY--~~-~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr 60 (80)
T PF10579_consen 8 QQIEKGLKLY--HQ-NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYR 60 (80)
T ss_pred HHHHHHHHHh--cc-chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888 77 899999999999999999998877776654 45666653
No 312
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.02 E-value=0.7 Score=38.96 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=49.8
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159 142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221 (259)
Q Consensus 142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~ 221 (259)
|..+|.+|+.+.|++...|+.||.++... |+.=+|+-+|-|++-..- ..+.+.-+|...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~--------------------~~~l~avy~y~Rsl~~~~-Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ--------------------GDDLDAVYYYIRSLAVRI-PFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHSSSB---HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc--------------------cchHHHHHHHHHHHhcCC-CcHHHHHHHHHH
Confidence 45789999999999999999999988663 778899999999997653 347788888888
Q ss_pred HHH
Q psy9159 222 YIE 224 (259)
Q Consensus 222 ~~~ 224 (259)
+.+
T Consensus 60 f~~ 62 (278)
T PF10373_consen 60 FEK 62 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 877
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.89 E-value=3 Score=32.07 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
++..++..++..+--.-|+.+++-.--|..+...|++. +|+..++...+-.|..+-+.-.++.|+.
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~--------------eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD--------------EAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH--------------HHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 78888888888888889999999999999999999875 9999999999999998988889999999
Q ss_pred Hhhchh
Q psy9159 125 ANGQFQ 130 (259)
Q Consensus 125 ~~~~~~ 130 (259)
.+++..
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 998875
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.83 E-value=0.41 Score=27.40 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
..++.++|.+|...|++. +|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~--------------~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYE--------------EALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcc--------------hhhHHHHHHHHH
Confidence 356789999999999876 666666666654
No 315
>KOG3364|consensus
Probab=91.83 E-value=4.5 Score=30.66 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME-LAPN-NSNTQKWYGICVGANGQFQSLKEKIKCGVVF 142 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~-~~P~-~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a 142 (259)
.+..+++|+++....+. ....+++..++..++ -.|+ .-+..+.++..+.++++|. .+
T Consensus 32 ~~s~f~lAwaLV~S~~~-----------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~----------~s 90 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDT-----------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS----------KS 90 (149)
T ss_pred HHHHHHHHHHHHcccch-----------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH----------HH
Confidence 45556667666543322 234578888888775 4443 2345566777777777776 45
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHH
Q psy9159 143 RDQMNKAIQMAPKDFTLYSLKGRYQ 167 (259)
Q Consensus 143 ~~~~~kAl~l~P~~~~~~~~lG~~~ 167 (259)
+.+.+..|+.+|+|..+....-.+.
T Consensus 91 ~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 91 LRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 6777777888888877766555443
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.55 E-value=4.4 Score=30.04 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhCCC---CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 194 EDAIANCLKAEELAPA---PWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 194 ~eAi~~~~kAi~l~P~---~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
+.|+.+|.+-=+++.+ .|+.+-++.|.++..+|+.++|++.|+++-++
T Consensus 79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444455555556641 24666788999999999999999999999764
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.38 E-value=0.31 Score=28.21 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.++..||.+-...++|++|++.|++++++-
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999864
No 318
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.86 E-value=0.64 Score=39.19 Aligned_cols=46 Identities=22% Similarity=0.073 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
|+.+|.+|+.+.| ++...|..||.+....|+.=.|+=+|-|++...
T Consensus 1 A~~~Y~~A~~l~P-~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLP-SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-T-TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCC-CCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 6889999999999 889999999999999999999999999998654
No 319
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.71 E-value=1.5 Score=33.54 Aligned_cols=51 Identities=18% Similarity=0.039 Sum_probs=41.6
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
+.++..+...+ .. |+++-|..+...++..+|+|.++....+.++.++|...
T Consensus 71 d~vl~~A~~~~--~~-gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAAL--AA-GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHH--HC-T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH--HC-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45677788877 67 99999999999999999999999999999999998643
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.70 E-value=2 Score=32.97 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=55.7
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHH
Q psy9159 142 FRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221 (259)
Q Consensus 142 a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~ 221 (259)
+...+...--+-|+.+..-..-|.++... |++.||+..+....+-.| ..+...-.++.|
T Consensus 29 ~e~lLdALrvLrP~~~e~d~~dg~l~i~r--------------------g~w~eA~rvlr~l~~~~~-~~p~~kAL~A~C 87 (153)
T TIGR02561 29 AQAMLDALRVLRPNLKELDMFDGWLLIAR--------------------GNYDEAARILRELLSSAG-APPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHhCCCccccchhHHHHHHHc--------------------CCHHHHHHHHHhhhccCC-CchHHHHHHHHH
Confidence 44555666668999999999999988764 889999999999999888 667777788999
Q ss_pred HHHhCCHH
Q psy9159 222 YIEAGEYA 229 (259)
Q Consensus 222 ~~~~g~~~ 229 (259)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 99999854
No 321
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.39 E-value=0.73 Score=26.65 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC
Q psy9159 158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207 (259)
Q Consensus 158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~ 207 (259)
.++..||.+.... ++|+.|+.-|++++++-
T Consensus 2 dv~~~Lgeisle~--------------------e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLEN--------------------ENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHH
Confidence 4677888877764 78999999999999874
No 322
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.92 E-value=0.78 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAK 73 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 73 (259)
|+.+.|...|++++...|.++++|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56789999999999999999999976554
No 323
>KOG4814|consensus
Probab=89.62 E-value=1.2 Score=41.95 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHHHhhCCCCc-----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchh
Q psy9159 191 PTAEDAIANCLKAEELAPAPW-----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHD 250 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~-----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~ 250 (259)
.+|..++++|.+.+.--|.+. ......|+.||..+.+.+.|++.+..|-+.+|.++-.+-
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 679999999999999777443 334778999999999999999999999999998875443
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.37 E-value=1.5 Score=37.51 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
.|.+.+|+...++++.++| -+...+..|-.+|..+|+--.|++.|++-
T Consensus 292 ~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4899999999999999999 77888999999999999988888777664
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.20 E-value=1.6 Score=34.67 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhC--CCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159 158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA--PAPWKENQLLIAKCYIEAGEYAKAVQWL 235 (259)
Q Consensus 158 ~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~~~~~~g~~~eA~~~~ 235 (259)
.++..+|..|.+.|+ .++|+++|.++.+-. |.+....++.+-.+.+..+++.....+.
T Consensus 37 ~~~~~l~~~~~~~Gd--------------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 37 MALEDLADHYCKIGD--------------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHHhhh--------------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 578889998888754 455555555544432 1111233444444444445555555555
Q ss_pred HHHhc
Q psy9159 236 DKAKA 240 (259)
Q Consensus 236 ~kal~ 240 (259)
.|+-.
T Consensus 97 ~ka~~ 101 (177)
T PF10602_consen 97 EKAES 101 (177)
T ss_pred HHHHH
Confidence 55443
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.12 E-value=2.7 Score=38.18 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=42.6
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
.+..|..+| .. |+|.+++..-....+..| +|.++..+|.+.....++.
T Consensus 465 ~LaDAEyLy--sq-gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 465 FLADAEYLY--SQ-GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred HHHHHHHHH--hc-ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence 367888888 67 999999999999999999 9999999999998877765
No 327
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.71 E-value=9 Score=34.65 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
++.+-|+.+-.+.|-++| .+..+++..|.|+..+.+|.+|-+.+.-|.-+
T Consensus 242 rkpdlALnh~hrsI~lnP-~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 242 RKPDLALNHSHRSINLNP-SYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred CCCchHHHHHhhhhhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999 77888888999999999999988877766543
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.32 E-value=15 Score=31.27 Aligned_cols=192 Identities=12% Similarity=0.009 Sum_probs=97.2
Q ss_pred hhHHHHHhhcCCcC-CHHHHHHHHHHHhhc-------CCCCH-------HHHHHHHHHHHHhhchhcccCcHHHHHHHHH
Q psy9159 32 YPEIDRLLYYGKKD-DKAKAYNLTMELNNK-------QPNDP-------DVLYRLAKACHCLYDIKRRENDKEASEKYIL 96 (259)
Q Consensus 32 ~~~~~~l~~~~~~~-~~~~A~~~~~~~~~~-------~p~~~-------~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~ 96 (259)
+.-+..++ .. + ++++|...++++.+. +...+ .++..++.+|...+... ..+
T Consensus 39 yn~G~~l~--~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~-----------~~~ 104 (278)
T PF08631_consen 39 YNIGKSLL--SK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE-----------SVE 104 (278)
T ss_pred HHHHHHHH--Hc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH-----------HHH
Confidence 34444555 45 7 899998888887665 22332 34445566666555432 345
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHh-----------cHHHHHHHHHHHHccCCCChhHHHHHHH
Q psy9159 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIK-----------CGVVFRDQMNKAIQMAPKDFTLYSLKGR 165 (259)
Q Consensus 97 ~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~kAl~l~P~~~~~~~~lG~ 165 (259)
+|..+.+.+-.-.|+.+..+.+.=.++...++.....+-+. ....+...+.+..+.+|..+........
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l 184 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 77777777777789888877443333433333332211110 1112334444545555543221111111
Q ss_pred HHHHhh-ccc-hHHHHHHHHHhcCCC------CCcHHHHHHHHHHHHhh--CCCCcHHh-------HHHHHHHHHHhCCH
Q psy9159 166 YQYEIS-KLS-FFERKIAVLIVSDLD------EPTAEDAIANCLKAEEL--APAPWKEN-------QLLIAKCYIEAGEY 228 (259)
Q Consensus 166 ~~~~~~-~~~-~~~~~~~~~~~~~~~------~g~~~eAi~~~~kAi~l--~P~~~~~~-------~~~la~~~~~~g~~ 228 (259)
+ .... .-. |.++.+...++.... .++.+.....+...... .| -.... .-+.|....+.++|
T Consensus 185 ~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~-ls~~~~~a~~~LLW~~~~~~~~~k~y 262 (278)
T PF08631_consen 185 L-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ-LSAEAASAIHTLLWNKGKKHYKAKNY 262 (278)
T ss_pred H-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 0 0110 111 556555543332211 22355555555533332 12 22222 22357778899999
Q ss_pred HHHHHHHHHHh
Q psy9159 229 AKAVQWLDKAK 239 (259)
Q Consensus 229 ~eA~~~~~kal 239 (259)
++|++||+-++
T Consensus 263 ~~A~~w~~~al 273 (278)
T PF08631_consen 263 DEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHH
Confidence 99999999776
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.76 E-value=2.1 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHH--HHHHHHhCCCC
Q psy9159 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY--AKKAMELAPNN 112 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~--~~kal~~~P~~ 112 (259)
++.++.+|..+...|++. +|+.. ++-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~--------------~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYD--------------EAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHH--------------HHHHHHHHHHHHHhcccC
Confidence 366788999999999875 99999 55888888865
No 330
>PF12854 PPR_1: PPR repeat
Probab=87.70 E-value=1.6 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=25.7
Q ss_pred hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 206 LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 206 l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
+.| +...|..|-..|.+.|+.++|.+.+++
T Consensus 3 ~~P--d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEP--DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCC--cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456 367789999999999999999999875
No 331
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=87.68 E-value=2 Score=34.37 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
.+..+..+++.++.+...| + +.++..++.++..+|+.++|..+.+++..+-|.
T Consensus 124 ~~~l~~~~~~a~~~l~~~P-~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRP-D-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3556888889999999999 4 788999999999999999999999999999983
No 332
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=87.48 E-value=1.8 Score=38.57 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
-..+|+.+++++.. .++|+.|..+|.++..+||..+ .+..++.+.+.+|..++.+|=..
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d--~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYD--NESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-S--SHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccc--cchHHHHHHHHHHHHHHHHHhhc
Confidence 45688888988876 5789999999999999999762 23345778899999999988543
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.47 E-value=3.4 Score=35.35 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.|+++.+++.+++-+.++| .+-..|..+=.+|...|+...|+..|++.-.+
T Consensus 166 ~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 166 CGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred cccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4889999999999999999 77889999999999999999999999998764
No 334
>KOG2422|consensus
Probab=87.47 E-value=26 Score=33.05 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHhh------------cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh--CC
Q psy9159 45 DDKAKAYNLTMELNN------------KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL--AP 110 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~------------~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~--~P 110 (259)
..|++|...|.-+.. ..|-+++.+..++.++...|+.. -..+.++.|+-.+++++.- .|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e-------~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDRE-------MAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHHHHhcccccc
Confidence 567777666665544 34777888899999988888654 5566778888888888742 12
Q ss_pred ------------CChHHHHHH---HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhHHHHHHHHH-HHhhcc
Q psy9159 111 ------------NNSNTQKWY---GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTLYSLKGRYQ-YEISKL 173 (259)
Q Consensus 111 ------------~~~~~~~~l---a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~~~~lG~~~-~~~~~~ 173 (259)
.|-..+..+ -..+...|.. ..|.+..+-.++++|. ||.+-..+-.+| +...++
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence 222211111 1111122222 2456677777999999 886554444433 332333
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC---HHHHHHHHHHHhcCCC
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE---YAKAVQWLDKAKAIPV 243 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~---~~eA~~~~~kal~l~p 243 (259)
+|..+. -++.+.. +-+.+-| ++. .-..||..|..... .+.|...+.+|+.+.|
T Consensus 395 qwiI~~--------------~~~~e~~-n~l~~~P-N~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 395 QWIIEL--------------SNEPENM-NKLSQLP-NFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHH--------------HHHHHhh-ccHhhcC-Cch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 333321 1111111 2245567 432 23456666665555 5788999999999988
No 335
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.18 E-value=21 Score=31.75 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=74.1
Q ss_pred HHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc----c---CCC------------ChhHHHHHHH
Q psy9159 105 AMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ----M---APK------------DFTLYSLKGR 165 (259)
Q Consensus 105 al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~----l---~P~------------~~~~~~~lG~ 165 (259)
.|..+|-+.+++..++.++...|+...+.+.++. |.-.+++++- . +++ |-..+..+-+
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleR---ALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLER---ALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 4577899999999999999999988765544443 3333443321 1 222 2222222222
Q ss_pred HHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 166 YQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.-..++ ..|.+..|.++.+-.+++||. |...+.+.+=..-.+.++++-=++.++....
T Consensus 109 ~i~~L~-----------------~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLG-----------------RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHH-----------------hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 111111 149999999999999999996 3334566666666677888888888776544
No 336
>KOG2300|consensus
Probab=86.54 E-value=27 Score=32.33 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHHhh---cCCC-------CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC-Ch
Q psy9159 45 DDKAKAYNLTMELNN---KQPN-------DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN-NS 113 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~---~~p~-------~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~-~~ 113 (259)
|++.+|+.....+.+ ..|. .+.++..+|.-....+- ++.|...|..|.++-.. +-
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTESIDL 402 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhhHHHH
Confidence 889988887666654 3444 45555555655555444 45888888887765432 22
Q ss_pred HH--HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-cCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159 114 NT--QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-MAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSD 187 (259)
Q Consensus 114 ~~--~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 187 (259)
.+ -.++|.+|-+.++.+ .+.++++ +.|.|. ......|.+++-.|-+.
T Consensus 403 ~a~~nlnlAi~YL~~~~~e--------------d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa------------- 455 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAE--------------DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA------------- 455 (629)
T ss_pred HHHHHHhHHHHHHHhccHH--------------HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH-------------
Confidence 22 345666666655443 2233333 556542 22222333332221110
Q ss_pred CCCCcHHHHHHHHHHHHhhCCC-Cc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhhh
Q psy9159 188 LDEPTAEDAIANCLKAEELAPA-PW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLST 253 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~-~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~~ 253 (259)
..++++.||.....+.++..-. +. .-...-||.+..-.|+..++.+..+-+.++....+|-...+.
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 0148899999999999997520 11 112455788888899999999999999998887777655443
No 337
>KOG4014|consensus
Probab=86.15 E-value=16 Score=29.37 Aligned_cols=169 Identities=14% Similarity=0.072 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
.+|++|...|+.--..+ ..+..-+.+|.-+. .|.. -..+....|.+.++.+-+ -+.+.+..++|.++.
T Consensus 49 knF~~A~kv~K~nCden-~y~kSCyKyG~y~~-~GKg--------G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~ 116 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDEN-SYPKSCYKYGMYML-AGKG--------GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHW 116 (248)
T ss_pred HHHHHHHHHHHhccccc-CCcHHHHHhhhhhh-cccC--------CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhc
Confidence 45666666665543322 22333344553333 2211 112345688888888876 567888888888776
Q ss_pred HhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC-------------CC
Q psy9159 125 ANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD-------------EP 191 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g 191 (259)
.-.....+. -+..++.+++.+| .+-++.++.+.|..|+..-.. +. .-+.|+ ..
T Consensus 117 ~g~~~r~~d---pd~~Ka~~y~tra--Cdl~~~~aCf~LS~m~~~g~~-----k~----~t~ap~~g~p~~~~~~~~~~k 182 (248)
T KOG4014|consen 117 NGEKDRKAD---PDSEKAERYMTRA--CDLEDGEACFLLSTMYMGGKE-----KF----KTNAPGEGKPLDRAELGSLSK 182 (248)
T ss_pred cCcCCccCC---CCcHHHHHHHHHh--ccCCCchHHHHHHHHHhccch-----hh----cccCCCCCCCcchhhhhhhhH
Confidence 432221110 1133677888888 455678888888888754211 00 001111 36
Q ss_pred cHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh----CCHHHHHHHHHHHhcCC
Q psy9159 192 TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA----GEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~----g~~~eA~~~~~kal~l~ 242 (259)
+.+.|.++-.+|.+++- +.+.-++...|..- ++-++|..+-++|.++.
T Consensus 183 DMdka~qfa~kACel~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 183 DMDKALQFAIKACELDI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hHHHHHHHHHHHHhcCC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 78999999999999963 56667777776443 45788999888888765
No 338
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.60 E-value=1.9 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.+.+...|++++...|.++..|..+..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 468999999999999999998876654
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.60 E-value=2.8 Score=29.31 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=39.5
Q ss_pred CcCCHHHHHHHHHHHhhcCCCC---------HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 43 KKDDKAKAYNLTMELNNKQPND---------PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
. |+|.+|++.+.+........ ..++.++|.++...|+.. +|+..+++|+.+...+
T Consensus 11 ~-~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~--------------~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 11 S-GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYE--------------EALQALEEAIRLAREN 74 (94)
T ss_pred c-CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHH
Confidence 5 89999988877776532211 355677888888888765 8888888888776543
No 340
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=19 Score=30.77 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN 126 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~ 126 (259)
-..|++.....+..+|..-.+|.-.=.+..... +..+++...++.-++++..+++-+|.+..+|.+--.++...
T Consensus 48 s~~aLklt~elid~npe~ytiwnyr~~I~~h~~------~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~ 121 (328)
T COG5536 48 SVRALKLTQELIDKNPEFYTIWNYRFSILKHVQ------MVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELF 121 (328)
T ss_pred CHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhh------hhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhC
Confidence 346777777788777766666543322222211 11224556778889999999999999999998888887765
Q ss_pred h--chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q psy9159 127 G--QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204 (259)
Q Consensus 127 ~--~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi 204 (259)
. ++. .-....++.|+.||.|..+|.-.-.++....++ ..-..+..-.++-..+|
T Consensus 122 p~~~~~----------rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~--------------~N~S~~k~e~eytt~~I 177 (328)
T COG5536 122 PKPSWG----------RELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL--------------FNFSDLKHELEYTTSLI 177 (328)
T ss_pred CCcccc----------hhHHHHHHHhcccccccceeeeEeeeeecchhh--------------ccchhHHHHHHhHHHHH
Confidence 2 221 123456788899999988886554333111110 00022344466666777
Q ss_pred hhCCCCcHHhHHHH---HHHHHHhCC------HHHHHHHHHHHhcCCCCCcc
Q psy9159 205 ELAPAPWKENQLLI---AKCYIEAGE------YAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 205 ~l~P~~~~~~~~~l---a~~~~~~g~------~~eA~~~~~kal~l~p~~~~ 247 (259)
.-|| .+..+|-+. -...+..|+ +++-+++...++-.+|++-+
T Consensus 178 ~tdi-~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S 228 (328)
T COG5536 178 ETDI-YNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQS 228 (328)
T ss_pred hhCC-CChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccc
Confidence 7788 566666554 222233333 45666777777777777654
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.76 E-value=4 Score=27.74 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHh---HHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKEN---QLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~---~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
+++.++|+..++++++-.+ +.... .-.|..+|...|++.+++++-.+=+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~-~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKIT-DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred cchHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999987 54444 445668899999999998886655443
No 342
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=1.9 Score=36.47 Aligned_cols=59 Identities=17% Similarity=-0.051 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccch
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~ 249 (259)
.++++.|..+-++.+.++| ..+.-+...|.+|..+|-+.-|++.+...++.-|+++...
T Consensus 194 e~~~~~al~~~~r~l~l~P-~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 194 ELQWELALRVAERLLDLNP-EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred hhchHHHHHHHHHHHhhCC-CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 4889999999999999999 6677789999999999999999999999999998887643
No 343
>KOG2300|consensus
Probab=83.98 E-value=17 Score=33.51 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH--hHHHHHHHHHHhCCHHHHHH
Q psy9159 156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE--NQLLIAKCYIEAGEYAKAVQ 233 (259)
Q Consensus 156 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~--~~~~la~~~~~~g~~~eA~~ 233 (259)
.+..++.+|..+... |.++.|..+|..|+++.-..... ...++|.+|...|+-+.--+
T Consensus 366 ~~~ih~LlGlys~sv--------------------~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~ 425 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSV--------------------NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYK 425 (629)
T ss_pred HHHHHHHHhhHhhhc--------------------chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHH
Confidence 456778888766553 77999999999999986522223 35779999999888665554
Q ss_pred HHHHH
Q psy9159 234 WLDKA 238 (259)
Q Consensus 234 ~~~ka 238 (259)
.++..
T Consensus 426 ~ld~i 430 (629)
T KOG2300|consen 426 ALDLI 430 (629)
T ss_pred HHHhc
Confidence 44443
No 344
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.42 E-value=25 Score=31.81 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHhhC--------CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 190 EPTAEDAIANCLKAEELA--------PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~--------P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.|+|..|++..+.. +++ |.-.+..++++|-+|+.+++|.+|++.|...+-
T Consensus 135 LGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999887643 333 212345589999999999999999999998864
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.53 E-value=8 Score=33.07 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=40.5
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
+.+..+. .. |+++.++..+++.+..+|-+-.+|..+-.+|...|+..
T Consensus 158 ~lae~~~--~~-~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~ 204 (280)
T COG3629 158 KLAEALI--AC-GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS 204 (280)
T ss_pred HHHHHHH--hc-ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch
Confidence 3444454 44 89999999999999999999999999999999999875
No 346
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.43 E-value=35 Score=31.38 Aligned_cols=141 Identities=10% Similarity=0.044 Sum_probs=75.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc-----------c-C--------cHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 53 LTMELNNKQPNDPDVLYRLAKACHCLYDIKRR-----------E-N--------DKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 53 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~-----------~-~--------~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.+++-|+.+|+|...|+.|-.-+-..|...+. + . ..+-..+.+..-...+-+||...=+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 78888999999999999998888777765410 0 0 0011223455555555566554432
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT 192 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 192 (259)
.+.|..+-.-..+.........+.. ..++-+..-.++-.+|...++|...|.++..-..+...+.+ .+
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~-i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQ-----------qr 176 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFK-IYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQ-----------QR 176 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhh-hHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHH-----------HH
Confidence 3333222111111111111111110 11122222234457899999999999876555444433322 34
Q ss_pred HHHHHHHHHHHHhh
Q psy9159 193 AEDAIANCLKAEEL 206 (259)
Q Consensus 193 ~~eAi~~~~kAi~l 206 (259)
.+.-...|++|+..
T Consensus 177 id~iR~~Y~ral~t 190 (660)
T COG5107 177 IDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHHHcC
Confidence 66667777777764
No 347
>KOG4014|consensus
Probab=81.40 E-value=26 Score=28.18 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH--HHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHH
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICV--GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQY 168 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~--~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~ 168 (259)
..++|++|...+++--.-+. .+...+-+|... +.-|+.. ....+.+.++.+ .+-+.+.+...+|.++.
T Consensus 47 i~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~-------~l~~a~r~~~~a--C~~n~~~aC~~~gLl~~ 116 (248)
T KOG4014|consen 47 IQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDA-------SLSKAIRPMKIA--CDANIPQACRYLGLLHW 116 (248)
T ss_pred HHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCcc-------CHHHHHHHHHHH--hccCCHHHHhhhhhhhc
Confidence 34567788877776655443 444445555322 2222221 222456666665 55778888888887654
Q ss_pred HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-----------------------
Q psy9159 169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA----------------------- 225 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~----------------------- 225 (259)
.-.. ..-..-+.++|.+++++|.+++- ..+.++|...|+..
T Consensus 117 ~g~~-------------~r~~dpd~~Ka~~y~traCdl~~---~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~ 180 (248)
T KOG4014|consen 117 NGEK-------------DRKADPDSEKAERYMTRACDLED---GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL 180 (248)
T ss_pred cCcC-------------CccCCCCcHHHHHHHHHhccCCC---chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence 3110 00012347899999999999864 45566666666554
Q ss_pred -CCHHHHHHHHHHHhcCC
Q psy9159 226 -GEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 226 -g~~~eA~~~~~kal~l~ 242 (259)
++.+.|.+.-.||.+++
T Consensus 181 ~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD 198 (248)
T ss_pred hHhHHHHHHHHHHHHhcC
Confidence 55666777666666654
No 348
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=11 Score=31.90 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~ 166 (259)
+.++.|....++.+.++|+++.-+.--|.++.++|.+. .+.+.++..++.-|+++.+-......
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~----------vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH----------VALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch----------hhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34679999999999999999988888999999999876 45688888899999999887776653
No 349
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=8.7 Score=32.80 Aligned_cols=160 Identities=10% Similarity=-0.024 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGAN 126 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~ 126 (259)
.+.-++.+..+++.+|++-.+|.-.-.++...-. ..+..-+..-++.+..||.|..+|..--++++..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~------------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~i 157 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK------------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTI 157 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC------------cccchhHHHHHHHhcccccccceeeeEeeeeecc
Confidence 3445677889999999999998766655443210 0133567778999999999999886555555332
Q ss_pred ---hchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Q psy9159 127 ---GQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPT-AEDAIANCLK 202 (259)
Q Consensus 127 ---~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~eAi~~~~k 202 (259)
.++.... .-.++-..+|.-||.|.++|+..-.|-...-.. +.....+ +++-+++...
T Consensus 158 e~~~N~S~~k-------~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~------------~~visqk~l~~eL~~i~~ 218 (328)
T COG5536 158 EDLFNFSDLK-------HELEYTTSLIETDIYNNSAWHHRYIWIERRFNR------------GDVISQKYLEKELEYIFD 218 (328)
T ss_pred hhhccchhHH-------HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhh------------cccchHHHHHHHHHHHHh
Confidence 2222111 113444667889999999999886544332110 1011111 6888999999
Q ss_pred HHhhCCCCcHHhHHHHHHHHHH----hCCHHHHHHHHHHH
Q psy9159 203 AEELAPAPWKENQLLIAKCYIE----AGEYAKAVQWLDKA 238 (259)
Q Consensus 203 Ai~l~P~~~~~~~~~la~~~~~----~g~~~eA~~~~~ka 238 (259)
++-.+| ++..+|.++-.+... .-.+.+-++.+.+-
T Consensus 219 ~if~~p-~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 219 KIFTDP-DNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY 257 (328)
T ss_pred hhhcCc-cccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 999999 777777765544322 22456666666443
No 350
>KOG0890|consensus
Probab=80.43 E-value=42 Score=36.89 Aligned_cols=149 Identities=10% Similarity=-0.022 Sum_probs=89.7
Q ss_pred hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 33 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.+..++-| .+ |+++.|...+-.+.+.. -|++....|+.....|+.. .|+...++.++++-.+
T Consensus 1674 LqsAriaR-~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~--------------~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1674 LQSARIAR-LA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDEL--------------NALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHH-hc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHH--------------HHHHHHHHHHHhhccc
Confidence 33445553 46 99999999888888766 4677778888888888764 8999999999776333
Q ss_pred --------hHHHHH--HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH
Q psy9159 113 --------SNTQKW--YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV 182 (259)
Q Consensus 113 --------~~~~~~--la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~ 182 (259)
|..-.. .+.+....+.+.+.... ......+..|..+.++.|.....|+.+|..|-+. +......
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl-----l~~~~~~ 1809 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL-----LEDYKSN 1809 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH-----hhhhhcc
Confidence 111111 11112222222211111 1123567899999999999889999999654332 1111000
Q ss_pred HHhcCCCCCcHHH---HHHHHHHHHhhCC
Q psy9159 183 LIVSDLDEPTAED---AIANCLKAEELAP 208 (259)
Q Consensus 183 ~~~~~~~~g~~~e---Ai~~~~kAi~l~P 208 (259)
..-++|++.. ++..|-+|+.-+-
T Consensus 1810 ---~~E~~g~~~~~l~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1810 ---KMEKSGRVLSLLKAIYFFGRALYYGN 1835 (2382)
T ss_pred ---cccccccHHHHHHHHHHHHHHHHhcc
Confidence 0123466666 7777778887654
No 351
>KOG4814|consensus
Probab=80.26 E-value=29 Score=33.27 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.+.+.|.+++++|-+.+| .++-..+.+-.+....|+-++|+....+....
T Consensus 408 ~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 408 EQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 345666666666666666 44545555555566666666666666655543
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.97 E-value=30 Score=32.05 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=42.0
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
+..+.+...+ .. |+...|-..+..++...|.+|......+.+...+|.++
T Consensus 291 ~~~~si~k~~--~~-gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye 340 (831)
T PRK15180 291 EITLSITKQL--AD-GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYE 340 (831)
T ss_pred HHHHHHHHHh--hc-cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHH
Confidence 4455566666 67 99999999999999999999999888999999998876
No 353
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=79.53 E-value=7.7 Score=20.83 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy9159 98 GIEYAKKAMELAPNNSNTQKWYGICVGA 125 (259)
Q Consensus 98 A~~~~~kal~~~P~~~~~~~~la~~~~~ 125 (259)
.+++..+++..+|.|..+|...-.++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4678899999999999999877666654
No 354
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=78.07 E-value=7.2 Score=21.20 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHHhhC
Q psy9159 190 EPTAEDAIANCLKAEELA 207 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~ 207 (259)
..+.++|+.+|++|.+..
T Consensus 18 ~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 18 KKDLEKALEYYKKAAELG 35 (36)
T ss_pred CcCHHHHHHHHHHHHHcc
Confidence 368899999999998753
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.23 E-value=16 Score=30.29 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChH
Q psy9159 35 IDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSN 114 (259)
Q Consensus 35 ~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~ 114 (259)
+..++ .. ++..+|+.+.+.-++.+|.+......+=..++-+|++. +|...++-+-++.|++..
T Consensus 8 ~seLL--~~-~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~--------------kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELL--DD-NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWE--------------KALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHH--Hh-ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHH--------------HHHHHHHHHhhcCcccch
Confidence 44677 56 89999999999999999999998888888899899875 999999999999998866
Q ss_pred HHHHH
Q psy9159 115 TQKWY 119 (259)
Q Consensus 115 ~~~~l 119 (259)
....+
T Consensus 71 ~a~ly 75 (273)
T COG4455 71 GASLY 75 (273)
T ss_pred HHHHH
Confidence 54433
No 356
>KOG0890|consensus
Probab=75.44 E-value=44 Score=36.79 Aligned_cols=115 Identities=11% Similarity=0.074 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHH
Q psy9159 64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR 143 (259)
Q Consensus 64 ~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~ 143 (259)
-.++|...|++....|.+ +.|-.+.-+|.+..+ ++++.-.|..+...|+-. .|+
T Consensus 1669 ~ge~wLqsAriaR~aG~~--------------q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~----------~Al 1722 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHL--------------QRAQNALLNAKESRL--PEIVLERAKLLWQTGDEL----------NAL 1722 (2382)
T ss_pred hHHHHHHHHHHHHhcccH--------------HHHHHHHHhhhhccc--chHHHHHHHHHHhhccHH----------HHH
Confidence 345555555555555544 588888888888774 466667788888888765 345
Q ss_pred HHHHHHHcc-CCC----------Ch------hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 144 DQMNKAIQM-APK----------DF------TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 144 ~~~~kAl~l-~P~----------~~------~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
..+++.+++ .|+ .. .+...+|+|..+.++ -.-++-+++|+.++++
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n------------------~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN------------------FESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc------------------hhHHHHHHHHHHHHHH
Confidence 666776643 233 11 123333443333222 1236778899999999
Q ss_pred CCCCcHHhHHHHHHHHH
Q psy9159 207 APAPWKENQLLIAKCYI 223 (259)
Q Consensus 207 ~P~~~~~~~~~la~~~~ 223 (259)
.| .+-.-++++|..|-
T Consensus 1785 l~-ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1785 LP-EWEDKHYHLGKYYD 1800 (2382)
T ss_pred cc-cccCceeeHHHHHH
Confidence 99 77777888885443
No 357
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.15 E-value=59 Score=28.74 Aligned_cols=173 Identities=16% Similarity=0.040 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcc---cC--------cHH-HHHHHHHHHHHHHHHHHHhCC-C
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRR---EN--------DKE-ASEKYILQGIEYAKKAMELAP-N 111 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~---~~--------~~~-~~~~~~~~A~~~~~kal~~~P-~ 111 (259)
+-..||+.+-+-.....|..|+++-.++.+.++-.+..-. .+ |.. -.-..+++|.....+++...- .
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 3467889988888999999999998888888775543210 01 111 124568899999999988763 3
Q ss_pred ChHHHHHHHHHHHHhh---chhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCC
Q psy9159 112 NSNTQKWYGICVGANG---QFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDL 188 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~---~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 188 (259)
-......++.++.... +... ..+...|+-...+.|+-.. -.+.+....+.
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW--------~~I~aLYdaL~~~apSPvV-~LNRAVAla~~------------------ 342 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDW--------PAIDALYDALEQAAPSPVV-TLNRAVALAMR------------------ 342 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCCh--------HHHHHHHHHHHHhCCCCeE-eehHHHHHHHh------------------
Confidence 2222222222222211 1110 0122344444445554332 22222222111
Q ss_pred CCCcHHHHHHHHHHHHh---hCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCccc
Q psy9159 189 DEPTAEDAIANCLKAEE---LAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248 (259)
Q Consensus 189 ~~g~~~eAi~~~~kAi~---l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~~ 248 (259)
.-.+-++...+...+ ++. +...+.-.|..+..+|+.++|...|++|+.+.++..+-
T Consensus 343 --~Gp~agLa~ve~L~~~~~L~g--y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 343 --EGPAAGLAMVEALLARPRLDG--YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred --hhHHhHHHHHHHhhccccccc--ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 002333333332222 222 23446667888889999999999999998888766553
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.05 E-value=22 Score=23.88 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHH
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQ 116 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~ 116 (259)
+.+..+.+|++.+.+++...||++.-.
T Consensus 24 eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 24 DAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 677888899999999999999987643
No 359
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.88 E-value=16 Score=27.81 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhch
Q psy9159 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQF 129 (259)
Q Consensus 95 ~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~ 129 (259)
+.-|.++...++..+|+|..+....+.++..+|..
T Consensus 86 ~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 86 YQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999999888753
No 360
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.78 E-value=3.7 Score=27.68 Aligned_cols=17 Identities=59% Similarity=0.583 Sum_probs=13.6
Q ss_pred CCcHHHHHHHHHHHHhh
Q psy9159 190 EPTAEDAIANCLKAEEL 206 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l 206 (259)
.|++++|+.+|++++++
T Consensus 19 ~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 19 EGNAEDAITNYKKAIEV 35 (75)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 48888888888888774
No 361
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.04 E-value=6.4 Score=26.58 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHHhh
Q psy9159 189 DEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 189 ~~g~~~eAi~~~~kAi~l 206 (259)
..|+|++|+.+|.+|++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 368899999999988885
No 362
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=73.99 E-value=7.6 Score=21.62 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=18.9
Q ss_pred HhHHHHH--HHHHHhC-----CHHHHHHHHHHHhcCC
Q psy9159 213 ENQLLIA--KCYIEAG-----EYAKAVQWLDKAKAIP 242 (259)
Q Consensus 213 ~~~~~la--~~~~~~g-----~~~eA~~~~~kal~l~ 242 (259)
.+.+.|| .+|..-. +.++|.++|++|.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4566677 4444433 4678888888887653
No 363
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=73.94 E-value=5.6 Score=35.53 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC------------HHHHHHHHHHHhcCC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE------------YAKAVQWLDKAKAIP 242 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~------------~~eA~~~~~kal~l~ 242 (259)
.-+..|++++++|..-+ .+..|..+|.+++.+|+ |++|.+.+++|-...
T Consensus 332 ~l~~~Al~yL~kA~d~d---dPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 332 ELIKKALEYLKKAQDED---DPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHHHS-----TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccC---ChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 34788999999998743 36779999999998887 778888888886543
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.94 E-value=42 Score=26.50 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCC
Q psy9159 114 NTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190 (259)
Q Consensus 114 ~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (259)
.++..+|..+...|+.. .|.+.|.++.+-..+.. ..+..+-++.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~----------~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~-------------------- 86 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLE----------EALKAYSRARDYCTSPGHKIDMCLNVIRVAIFF-------------------- 86 (177)
T ss_pred HHHHHHHHHHHHhhhHH----------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 45667788888888877 45677777766433222 2233333333332
Q ss_pred CcHHHHHHHHHHHHhhCC--CCcH-H--hHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 191 PTAEDAIANCLKAEELAP--APWK-E--NQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P--~~~~-~--~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
+++..+..+..+|-.+-. .++. . ....-|..++..++|.+|-+.|-.+..-
T Consensus 87 ~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 87 GDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 778888888888877632 1121 1 2455677888889999999988777543
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=73.75 E-value=29 Score=35.04 Aligned_cols=97 Identities=15% Similarity=-0.078 Sum_probs=69.5
Q ss_pred HHHHHHHHHHccCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHH
Q psy9159 141 VFRDQMNKAIQMAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL 217 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~ 217 (259)
.|...|++.-.-.|.-. ++.+.+|....+...- ......+++|+.-|++.-.- | .-+--|+-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 557 (932)
T PRK13184 493 QALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASE-------------QGDPRDFTQALSEFSYLHGG-V-GAPLEYLG 557 (932)
T ss_pred HHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHh-------------cCChHHHHHHHHHHHHhcCC-C-CCchHHHh
Confidence 45566666667788644 6778888877654221 01113589999999887553 4 33444778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhcCCCCCccchhhh
Q psy9159 218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLS 252 (259)
Q Consensus 218 la~~~~~~g~~~eA~~~~~kal~l~p~~~~~~~~~ 252 (259)
-|.+|..+|+++|-+++|..|+..-|..|+=..++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 88999999999999999999999999998854443
No 366
>KOG1538|consensus
Probab=73.57 E-value=91 Score=30.20 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
.+++.+|...-++--+.-| .+|+..|..+....+|+||.+.|.||
T Consensus 786 ~~~W~eAFalAe~hPe~~~----dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD----DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCccccc----cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 5889998777666544444 46778888888888888888888876
No 367
>KOG3616|consensus
Probab=73.25 E-value=29 Score=33.92 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=21.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHH
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWL 235 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~ 235 (259)
|++++|.+.-.+.. .|...+..|..-+.-+-..|+|.+|.+.|
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44555444333332 24333444555566666667666665544
No 368
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.83 E-value=72 Score=28.67 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=41.5
Q ss_pred HHHHHhhcCCcCCHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH
Q psy9159 34 EIDRLLYYGKKDDKAKAYNLTMELNNKQP-----NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK 104 (259)
Q Consensus 34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k 104 (259)
.+-.++ .. ++|..|...+.++....+ ...+.+..+..+|.....+. +++|.+.+++
T Consensus 136 ~~r~l~--n~-~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd------------~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAI--NA-FDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFE------------HEEALDYLND 196 (380)
T ss_pred HHHHHH--Hh-cChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccC------------HHHHHHHHhh
Confidence 444666 56 999999999999998754 23456677888887776654 4688888875
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.78 E-value=34 Score=31.76 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHH
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVF 142 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a 142 (259)
+.+..|-....-++...|..|.-....+.++..+|.+++..+.+..++.+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 34566667777889999999998888999999999999877655544433
No 370
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=72.29 E-value=62 Score=27.71 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=73.1
Q ss_pred HHHHHhhcCCcCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPN--DPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 34 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
++..++ .+ ++|++--..+.+..+...+ ..+.-+..+.. ..+.+. .......-....+.++.=++..|+
T Consensus 6 ~ir~LL--~~-~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~--~~~l~D-----~~~~~~~~~~~~~~LkaWv~a~P~ 75 (277)
T PF13226_consen 6 DIRELL--QA-RDFAELDALLARLLQAWLQSRDGEQRYFRAWM--SSTLFD-----MDSVVDAWQARLAVLKAWVAACPK 75 (277)
T ss_pred HHHHHH--Hh-CcHHHHHHHHHHHHHhhhhccCccchHHHHHh--hccccC-----cchhhhHHHhHHHHHHHHHHHCCC
Confidence 556677 56 8898888888877654332 11111111111 111111 000000112456666777789999
Q ss_pred ChHHHHHHHHHHHHhh-chhh-----------HHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhh
Q psy9159 112 NSNTQKWYGICVGANG-QFQS-----------LKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~-~~~~-----------~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~ 171 (259)
+..++...|..+...+ +..+ ....-.....+..++.+|++++|....+...+-++....+
T Consensus 76 Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 76 SYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred ChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 9999998888876543 1111 0111122346778899999999999988877766544433
No 371
>KOG1839|consensus
Probab=72.22 E-value=18 Score=37.08 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=91.0
Q ss_pred HHHHHHH-HHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCC-CChhHHHHHHHHHHHhhccc
Q psy9159 97 QGIEYAK-KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAP-KDFTLYSLKGRYQYEISKLS 174 (259)
Q Consensus 97 ~A~~~~~-kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P-~~~~~~~~lG~~~~~~~~~~ 174 (259)
+++..+. .--.+.|+....+..++.++..+++..++.. ...++.-..++.+.+++ +....+..++...+..
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~---~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~---- 1028 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIA---QQRKACIISERVLGKDSPNTKLAYGNLALYEFAV---- 1028 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHH---hcccceeeechhccCCCHHHHHHhhHHHHHHHhc----
Confidence 4444666 4446678999999999999999998865432 22223334456666654 3445666676655554
Q ss_pred hHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh--------CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCc
Q psy9159 175 FFERKIAVLIVSDLDEPTAEDAIANCLKAEEL--------APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY 246 (259)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l--------~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~ 246 (259)
++...|...+.++..+ .| .......+++.++...++++.|+++++.|+...-.-.
T Consensus 1029 ----------------~~~~~al~~~~ra~~l~~Ls~ge~hP-~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1029 ----------------KNLSGALKSLNRALKLKLLSSGEDHP-PTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred ----------------cCccchhhhHHHHHHhhccccCCCCC-chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445556666666554 35 4455578899999999999999999999999766555
Q ss_pred cchhhhhhhcc
Q psy9159 247 ESHDLSTTYSY 257 (259)
Q Consensus 247 ~~~~~~~~~~~ 257 (259)
.++.+-+.++|
T Consensus 1092 g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1092 GPKELETALSY 1102 (1236)
T ss_pred CccchhhhhHH
Confidence 55666555554
No 372
>KOG1464|consensus
Probab=72.15 E-value=63 Score=27.76 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPD----VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la 120 (259)
.+.++|++-|.++++..|+-.+ ++-.+-.+++.++++. +-...+.+-+.+.+.|+..+-..-.+-.-+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~-------eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il- 112 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYK-------EMMERYKQLLTYIKSAVTRNYSEKSINSIL- 112 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHH-------HHHHHHHHHHHHHHHHHhccccHHHHHHHH-
Confidence 5899999999999999887765 3445667778888776 667778888888888888775433222111
Q ss_pred HHHHHhhchhhHHHHHhcHHHHHHHHHHHHc--cCCCChhHH----HHHHHHHHHhhccchHHHHHHHHHhcC-------
Q psy9159 121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ--MAPKDFTLY----SLKGRYQYEISKLSFFERKIAVLIVSD------- 187 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~--l~P~~~~~~----~~lG~~~~~~~~~~~~~~~~~~~~~~~------- 187 (259)
++....+.+.. ..+.|+..|. -+..|...| ..||.+++..+.+..+.+-+.++.-.+
T Consensus 113 -------DyiStS~~m~L---LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 113 -------DYISTSKNMDL---LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred -------HHHhhhhhhHH---HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 11111111111 1233333322 122333333 457777776665443333332211100
Q ss_pred -------------------CCCCcHHHHHHHHHHHHhhC---CCCcHHhHHHH----HHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 188 -------------------LDEPTAEDAIANCLKAEELA---PAPWKENQLLI----AKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 188 -------------------~~~g~~~eAi~~~~kAi~l~---P~~~~~~~~~l----a~~~~~~g~~~eA~~~~~kal~l 241 (259)
..+.+-.+--..|++|+-+. | + +.+.--+ |..+...|++++|...|-.|..-
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-H-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-H-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-c-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 01233344445677777765 4 2 2221111 24466778899998888888765
Q ss_pred CCC
Q psy9159 242 PVV 244 (259)
Q Consensus 242 ~p~ 244 (259)
-..
T Consensus 261 YDE 263 (440)
T KOG1464|consen 261 YDE 263 (440)
T ss_pred ccc
Confidence 433
No 373
>KOG3807|consensus
Probab=71.73 E-value=61 Score=28.66 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 93 KYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 93 ~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
.+-.+-+.....|++++|+-+.++..++.
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAE 226 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAE 226 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhh
Confidence 33455567778899999998888765543
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.59 E-value=53 Score=26.63 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCHHH---HHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHH
Q psy9159 49 KAYNLTMELNNKQPNDPDV---LYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNS---NTQKWYGIC 122 (259)
Q Consensus 49 ~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~---~~~~~la~~ 122 (259)
+.....++....+|.+.-+ ...+|.++...++ +++|+..++.++..-.|.. -+-.+++.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~A~aqL~~~l~~t~De~lk~l~~lRLArv 135 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDKAEAQLKQALAQTKDENLKALAALRLARV 135 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 6666666766666555432 2234555555554 4588888888875443321 123456666
Q ss_pred HHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHH
Q psy9159 123 VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD--FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANC 200 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~--~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~ 200 (259)
+...+.++.+ ...++. ....+ +..-...|.++... |+-++|+..|
T Consensus 136 q~q~~k~D~A----------L~~L~t---~~~~~w~~~~~elrGDill~k--------------------g~k~~Ar~ay 182 (207)
T COG2976 136 QLQQKKADAA----------LKTLDT---IKEESWAAIVAELRGDILLAK--------------------GDKQEARAAY 182 (207)
T ss_pred HHHhhhHHHH----------HHHHhc---cccccHHHHHHHHhhhHHHHc--------------------CchHHHHHHH
Confidence 6666655422 222211 11111 12345678877764 8899999999
Q ss_pred HHHHhhCC
Q psy9159 201 LKAEELAP 208 (259)
Q Consensus 201 ~kAi~l~P 208 (259)
++|++.++
T Consensus 183 ~kAl~~~~ 190 (207)
T COG2976 183 EKALESDA 190 (207)
T ss_pred HHHHHccC
Confidence 99999987
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.29 E-value=7.5 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHH
Q psy9159 69 YRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAME 107 (259)
Q Consensus 69 ~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~ 107 (259)
+.+|++|..+|+.. .|++.+++.+.
T Consensus 3 LdLA~ayie~Gd~e--------------~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLE--------------GARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChH--------------HHHHHHHHHHH
Confidence 56899999999875 99999999994
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.08 E-value=53 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCcCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Q psy9159 42 GKKDDKAKAYNLTMELNNKQPN-DPDVLYRLAKACH 76 (259)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 76 (259)
.. |+|++.+...++++..+|+ +.+=...++.+|-
T Consensus 13 q~-eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayK 47 (236)
T PF00244_consen 13 QA-ERYDDMVEYMKQLIEMNPELTEEERNLLSVAYK 47 (236)
T ss_dssp HT-THHHHHHHHHHHHHHTSS---HHHHHHHHHHHH
T ss_pred Hh-cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45 9999999999999988763 3444455666663
No 377
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.90 E-value=16 Score=33.20 Aligned_cols=84 Identities=7% Similarity=0.047 Sum_probs=56.7
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhc--------C---CCCHHHH-------HHHHHHHHHhhchhcccCcHHHHHH
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNK--------Q---PNDPDVL-------YRLAKACHCLYDIKRRENDKEASEK 93 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--------~---p~~~~~~-------~~la~~~~~~g~~~~~~~~~~~~~~ 93 (259)
++++...+ .+ ++|.-|.-.|..+++. . |.-.++. -.+..+|..+++..
T Consensus 180 L~das~~y--rq-k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpd----------- 245 (569)
T PF15015_consen 180 LKDASSCY--RQ-KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPD----------- 245 (569)
T ss_pred HHHHHHHH--hh-HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCc-----------
Confidence 56666666 45 5555555555555442 1 2222221 23556667777654
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhH
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSL 132 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~ 132 (259)
-|+....++|.++|-++--|.|-|.+...+..+..+
T Consensus 246 ---lALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 246 ---LALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred ---hHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999888777654
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.74 E-value=53 Score=26.29 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=88.7
Q ss_pred cCCchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH
Q psy9159 28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVL--YRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105 (259)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka 105 (259)
+.+.+..+-.+- .. ++.++|+..|...-+..-.+..++ .+.|-+..+.|+. ..|..+|.++
T Consensus 58 sgd~flaAL~lA--~~-~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdt--------------a~AV~aFdei 120 (221)
T COG4649 58 SGDAFLAALKLA--QE-NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDT--------------AAAVAAFDEI 120 (221)
T ss_pred chHHHHHHHHHH--Hc-CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccH--------------HHHHHHHHHH
Confidence 345667776777 56 899999999999988765554443 3345555555544 3788888776
Q ss_pred HHhCCCChHHHHHH-----HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHH
Q psy9159 106 MELAPNNSNTQKWY-----GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI 180 (259)
Q Consensus 106 l~~~P~~~~~~~~l-----a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~ 180 (259)
-+-.| .|.+...+ ++++...|.|..+..+.+ --+-.-+|--..+--.||..-++
T Consensus 121 a~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srve---------pLa~d~n~mR~sArEALglAa~k----------- 179 (221)
T COG4649 121 AADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVE---------PLAGDGNPMRHSAREALGLAAYK----------- 179 (221)
T ss_pred hccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhh---------hccCCCChhHHHHHHHHhHHHHh-----------
Confidence 55443 44444333 444555555553221111 00112333344555566655444
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHH
Q psy9159 181 AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIE 224 (259)
Q Consensus 181 ~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~ 224 (259)
.|++.+|.++|..... |. +.+++..+++.+.+.
T Consensus 180 ---------agd~a~A~~~F~qia~-Da-~aprnirqRAq~mld 212 (221)
T COG4649 180 ---------AGDFAKAKSWFVQIAN-DA-QAPRNIRQRAQIMLD 212 (221)
T ss_pred ---------ccchHHHHHHHHHHHc-cc-cCcHHHHHHHHHHHH
Confidence 3889999999999877 54 456677777776654
No 379
>PF13041 PPR_2: PPR repeat family
Probab=70.66 E-value=12 Score=22.43 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
...|..+=..|.+.|++++|.+.|++-.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 566788888999999999999999988764
No 380
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.73 E-value=8.4 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
|..+=.+|.+.|++++|.+.+++-.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 566778899999999999999886653
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.08 E-value=97 Score=29.64 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=52.4
Q ss_pred HHHHHHHHHc---cCCC-ChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCC-CcHH---
Q psy9159 142 FRDQMNKAIQ---MAPK-DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKE--- 213 (259)
Q Consensus 142 a~~~~~kAl~---l~P~-~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~-~~~~--- 213 (259)
++.+++-+++ +.|. .+.+...+|.++++- +.++++|..++.|++.+... ...+
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-------------------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-------------------TENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 4566666553 2221 345678888887753 46788888888888877631 2222
Q ss_pred -hHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 214 -NQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 214 -~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
..+-++.++.+.+... |...++++++.-
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 2445677777777766 888888877654
No 382
>KOG1258|consensus
Probab=68.95 E-value=1.1e+02 Score=29.08 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-cCCCChhHHHHHHHHHH
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-MAPKDFTLYSLKGRYQY 168 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-l~P~~~~~~~~lG~~~~ 168 (259)
...+.++...-.+++++---....+.|..++.-+...|+...+ ...+.++.+ .-|+.+..+..-+++.-
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~----------~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLA----------NNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHH----------HHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 3455667777777777777777777777777666666554422 223333333 34556666666665544
Q ss_pred HhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHH
Q psy9159 169 EISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAV 232 (259)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~ 232 (259)
.. |++..|...+++..+--| ....+-.........+|+.+.+.
T Consensus 378 ~~--------------------~n~~~A~~~lq~i~~e~p-g~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 378 SN--------------------GNFDDAKVILQRIESEYP-GLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hh--------------------ccHHHHHHHHHHHHhhCC-chhhhHHHHHhHHHHhcchhhhh
Confidence 32 889999999999999889 67777666677788889988888
No 383
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=68.15 E-value=58 Score=27.32 Aligned_cols=74 Identities=16% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHc-----cCCCCh---hHHHHHHHHHHHhhccchHHHHHHHHH
Q psy9159 113 SNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQ-----MAPKDF---TLYSLKGRYQYEISKLSFFERKIAVLI 184 (259)
Q Consensus 113 ~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~-----l~P~~~---~~~~~lG~~~~~~~~~~~~~~~~~~~~ 184 (259)
...+...|-.+..+..+....++......+.+.|++|++ +.|+|| ....+.+.+|++.
T Consensus 118 VFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI-------------- 183 (244)
T smart00101 118 VFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEI-------------- 183 (244)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH--------------
Q ss_pred hcCCCCCcHHHHHHHHHHHHh
Q psy9159 185 VSDLDEPTAEDAIANCLKAEE 205 (259)
Q Consensus 185 ~~~~~~g~~~eAi~~~~kAi~ 205 (259)
.++.++|+...++|++
T Consensus 184 -----~~~~~~A~~lAk~afd 199 (244)
T smart00101 184 -----LNSPDRACNLAKQAFD 199 (244)
T ss_pred -----cCCHHHHHHHHHHHHH
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=67.86 E-value=90 Score=28.70 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=13.1
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q psy9159 220 KCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 220 ~~~~~~g~~~eA~~~~~ka 238 (259)
.++..+|+.++.++.+.++
T Consensus 410 ~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 4666778888888777765
No 385
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=67.14 E-value=37 Score=23.12 Aligned_cols=37 Identities=5% Similarity=0.086 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchh
Q psy9159 91 SEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ 130 (259)
Q Consensus 91 ~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~ 130 (259)
..+...+++....++++.+|+||..+. .....++++.
T Consensus 19 ~a~~~~~~l~~Al~~l~~~pdnP~~LA---~~Qa~l~eyn 55 (80)
T PRK15326 19 GVDNLQTQVTEALDKLAAKPSDPALLA---AYQSKLSEYN 55 (80)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHH---HHHHHHHHHH
Confidence 344556778888889999999997654 4444455554
No 386
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.10 E-value=39 Score=25.72 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
|+-+.--..+....+-...+|+++..+|.+|...|+.. ++-+...+|-+.
T Consensus 100 ~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r--------------~~~ell~~ACek 149 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTR--------------EANELLKEACEK 149 (161)
T ss_dssp T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HH--------------HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchh--------------hHHHHHHHHHHh
Confidence 66666666666666556678999999999999999865 566666665543
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.09 E-value=52 Score=24.39 Aligned_cols=46 Identities=11% Similarity=-0.117 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhC-CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 194 EDAIANCLKAEELA-PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 194 ~eAi~~~~kAi~l~-P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
.++.+.|+...+.. ....+..|...|..+...|++++|.+.|++++
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 37777777776643 22567778899999999999999999999875
No 388
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.08 E-value=13 Score=25.01 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHHHhh
Q psy9159 189 DEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 189 ~~g~~~eAi~~~~kAi~l 206 (259)
..|+|++|+.+|..|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 358888888888888875
No 389
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.73 E-value=38 Score=29.29 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHH
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLK 133 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~ 133 (259)
.+.+|.++++++++++|=+...+..+-.++...|+-.++.
T Consensus 294 ~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 294 KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence 3579999999999999999999999988999888855443
No 390
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.27 E-value=21 Score=29.56 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
++..+||...+.-++-+| .+......|-..|+-.|++++|..-++-+-++.|...-
T Consensus 15 ~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 15 NSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred ccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 788999999999999999 55666777888999999999999999999999987653
No 391
>KOG4279|consensus
Probab=65.07 E-value=9.3 Score=37.08 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccC-CCChhHHHHHHHHHHHhhccchHHHHHHHHHh--cCCCCCc
Q psy9159 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMA-PKDFTLYSLKGRYQYEISKLSFFERKIAVLIV--SDLDEPT 192 (259)
Q Consensus 116 ~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~-P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~~g~ 192 (259)
.++++.++.+...... -.+|....-.+++.+ |-.+..+..-|++|..+ ++ +....+.
T Consensus 243 ~f~YaFALNRRNr~GD-------RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDm-------------F~~S~ytDa~s 302 (1226)
T KOG4279|consen 243 RFHYAFALNRRNRPGD-------RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM-------------FIASNYTDAES 302 (1226)
T ss_pred EEEeeehhcccCCCcc-------HHHHHHHHHHHHHhcCCCCCceeeeechhhhhh-------------hhccCCcchhh
Confidence 3455666655543321 113445555555554 44567888899998654 11 1133577
Q ss_pred HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCC-HHHHHHHHHHHhcCC
Q psy9159 193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGE-YAKAVQWLDKAKAIP 242 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~-~~eA~~~~~kal~l~ 242 (259)
.+.|++||++|.+..|. ...=.++|..+...|+ |+...+.-.-+..++
T Consensus 303 ~~~a~~WyrkaFeveP~--~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 303 LNHAIEWYRKAFEVEPL--EYSGINLATLLRAAGEHFENSLELQQIGMKLN 351 (1226)
T ss_pred HHHHHHHHHHHhccCch--hhccccHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 89999999999999993 3445778888888774 666666555554443
No 392
>KOG0546|consensus
Probab=64.06 E-value=8.4 Score=33.91 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVG 124 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~ 124 (259)
+.+..|+-.-..++..+++...++|+.+..+....++. +|++..+.+....|++......+..+-.
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~--------------~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD--------------EALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh--------------hhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 67778887778888899999999999999999888765 9999999999999999876655544433
Q ss_pred Hh
Q psy9159 125 AN 126 (259)
Q Consensus 125 ~~ 126 (259)
..
T Consensus 355 ~~ 356 (372)
T KOG0546|consen 355 KK 356 (372)
T ss_pred HH
Confidence 33
No 393
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.88 E-value=18 Score=19.01 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
|..+-.+|.+.|++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556777899999999999999987654
No 394
>KOG0985|consensus
Probab=63.07 E-value=98 Score=31.72 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHH
Q psy9159 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQW 234 (259)
Q Consensus 155 ~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~ 234 (259)
+.+.+|..+|....+. |...+||+-|-|| +.+..|.+.-.+-...|++++-+++
T Consensus 1102 n~p~vWsqlakAQL~~--------------------~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQG--------------------GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred CChHHHHHHHHHHHhc--------------------CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 4577888888766553 6678888877776 2234567777777777888888888
Q ss_pred HHHHhcCCCCCc
Q psy9159 235 LDKAKAIPVVSY 246 (259)
Q Consensus 235 ~~kal~l~p~~~ 246 (259)
+..|.+.--...
T Consensus 1156 L~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1156 LLMARKKVREPY 1167 (1666)
T ss_pred HHHHHHhhcCcc
Confidence 777765443333
No 395
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=63.01 E-value=1.1e+02 Score=27.30 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHh---------CCHHHHHHHHHHHhcCCCCCcc
Q psy9159 212 KENQLLIAKCYIEA---------GEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 212 ~~~~~~la~~~~~~---------g~~~eA~~~~~kal~l~p~~~~ 247 (259)
..+++.+|.+|.+. +....+++.|+.+++.-..+++
T Consensus 300 l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 300 LYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 45688999988777 5577888888888775444443
No 396
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=62.88 E-value=1.1e+02 Score=27.03 Aligned_cols=28 Identities=36% Similarity=0.352 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 213 ~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.+++..|......+++.+|+.+++.|..
T Consensus 254 ~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 281 (346)
T cd09247 254 RSQLYLARRLKEAGHIGVAVGVLREALR 281 (346)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3456667667777888888888887766
No 397
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.14 E-value=7.9 Score=26.11 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhhC
Q psy9159 192 TAEDAIANCLKAEELA 207 (259)
Q Consensus 192 ~~~eAi~~~~kAi~l~ 207 (259)
.|.+|+++|..++...
T Consensus 28 ~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 28 YYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3899999999987665
No 398
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.05 E-value=11 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=11.8
Q ss_pred CcHHHHHHHHHHHHhh
Q psy9159 191 PTAEDAIANCLKAEEL 206 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l 206 (259)
|+|++|..+|..+++.
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7777777777777764
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.04 E-value=48 Score=27.62 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHHHhhCC-CCc----HHhHHHHHHHHHHhCCHHHHHHHHHHHh
Q psy9159 190 EPTAEDAIANCLKAEELAP-APW----KENQLLIAKCYIEAGEYAKAVQWLDKAK 239 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P-~~~----~~~~~~la~~~~~~g~~~eA~~~~~kal 239 (259)
.|++++|+++|+.+...-- +.+ ..+...+..|...+|+.++.+...-+.+
T Consensus 191 ~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 191 LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3899999999999976521 022 2446678899999999998888766554
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.63 E-value=16 Score=33.00 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=26.2
Q ss_pred HHHHhhchhhHHHHHhcHHHHHHHHHHH--HccCCCChhHHHHHHHHHHHhhc
Q psy9159 122 CVGANGQFQSLKEKIKCGVVFRDQMNKA--IQMAPKDFTLYSLKGRYQYEISK 172 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~kA--l~l~P~~~~~~~~lG~~~~~~~~ 172 (259)
++.-+|++..+.+.++... .-+++ -+..|-+...++.+|-.|+.+++
T Consensus 131 vh~LLGDY~~Alk~l~~id----l~~~~l~~~V~~~~is~~YyvGFaylMlrR 179 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLENID----LNKKGLYTKVPACHISTYYYVGFAYLMLRR 179 (404)
T ss_pred HHHhccCHHHHHHHhhccC----cccchhhccCcchheehHHHHHHHHHHHHH
Confidence 3445677775544333221 00111 12455577889999999988744
No 401
>KOG0546|consensus
Probab=59.93 E-value=4.2 Score=35.72 Aligned_cols=56 Identities=16% Similarity=0.011 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
+.+..|+..-..++..++ ....+++.++..+..+.++++|++++..+....|.+.+
T Consensus 289 ~~~~~a~~~~~~~~~~~~-s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDER-SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cCCCcceeccccccccCh-hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 667777777777777888 67788999999999999999999999999999976654
No 402
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.82 E-value=78 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHhhch
Q psy9159 63 NDPDVLYRLAKACHCLYDI 81 (259)
Q Consensus 63 ~~~~~~~~la~~~~~~g~~ 81 (259)
++++.|-+||.+....|+.
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp STHHHHHHHHHHHHHTTBH
T ss_pred CcHHHHHHHHHHHHHcCCH
Confidence 4556666666666666654
No 403
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.46 E-value=1e+02 Score=26.38 Aligned_cols=81 Identities=11% Similarity=-0.055 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhccc--Cc---HH---HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9159 50 AYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRE--ND---KE---ASEKYILQGIEYAKKAMELAPNNSNTQKWYGI 121 (259)
Q Consensus 50 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~--~~---~~---~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~ 121 (259)
-.+.++.=++..|++..++..+|..+...+=..+.. .+ .+ .-....+.|...+.+|++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 455666668889999999999999888654211100 01 11 22445789999999999999999998887777
Q ss_pred HHHHhhchh
Q psy9159 122 CVGANGQFQ 130 (259)
Q Consensus 122 ~~~~~~~~~ 130 (259)
+-+.+|...
T Consensus 142 ~s~~fgeP~ 150 (277)
T PF13226_consen 142 ISAYFGEPD 150 (277)
T ss_pred HHhhcCCch
Confidence 777777654
No 404
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=57.76 E-value=1.5e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=23.5
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
..+++.+|......|++.+|+.+++.|..
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~ 324 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKK 324 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHH
Confidence 34566777777788999999999999977
No 405
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=55.66 E-value=13 Score=23.65 Aligned_cols=18 Identities=44% Similarity=0.595 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHHHHhh
Q psy9159 1 MYSKLFVLSLFQFAFVQF 18 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (259)
|=||+||+++++++.+..
T Consensus 1 MA~Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAI 18 (65)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 678999999998888773
No 406
>KOG0128|consensus
Probab=54.66 E-value=2.3e+02 Score=28.19 Aligned_cols=117 Identities=11% Similarity=-0.006 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccch
Q psy9159 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~ 175 (259)
+.-+..++.-+.+++.+...+.+|-.++...|++... ...-.++-++.|..+..|..-..-...+
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl----------~~ar~~~~~~~pl~~~lWl~Wl~d~~~m----- 160 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKL----------RQARLEMSEIAPLPPHLWLEWLKDELSM----- 160 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHH----------HHHHHHHHHhcCCChHHHHHHHHHHHhh-----
Confidence 3556677778889999999999999999888888732 2333556678888888776544322222
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh-------CCHHHHHHHHHHHhcC
Q psy9159 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA-------GEYAKAVQWLDKAKAI 241 (259)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~-------g~~~eA~~~~~kal~l 241 (259)
.+.+.-.++...|++|+.-. +.+..|...+...... ++++.-...|.+++..
T Consensus 161 ------------t~s~~~~~v~~~~ekal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 161 ------------TQSEERKEVEELFEKALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred ------------ccCcchhHHHHHHHHHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 22477888999999998743 3355666666555444 4566777777777764
No 407
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=54.34 E-value=28 Score=19.25 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPNDPDVLYRLAK 73 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~~~~~~~la~ 73 (259)
.++.|.++|++.+...|+ +..|...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 578999999999999876 677766553
No 408
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=53.67 E-value=1.6e+02 Score=26.03 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 214 NQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 214 ~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
++++.|..+...+++.+|+..++.|..
T Consensus 246 A~y~~a~~~~~~~k~GeaIa~L~~A~~ 272 (348)
T cd09242 246 AAYYHALALEAAGKYGEAIAYLTQAES 272 (348)
T ss_pred HHHHHHHHhHHhccHHHHHHHHHHHHH
Confidence 345566666667777777777777654
No 409
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=52.63 E-value=69 Score=21.52 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCh
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNS 113 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~ 113 (259)
+....+.+|++.+..++..+|+..
T Consensus 24 eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 24 EALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCHH
Confidence 677888899999999999998754
No 410
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.48 E-value=77 Score=22.66 Aligned_cols=45 Identities=16% Similarity=-0.042 Sum_probs=28.3
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY 79 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 79 (259)
+.++-..+ .. |++++|...+.++-+..+..+-.+...|++-..+|
T Consensus 63 l~~Gl~al--~~-G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIAL--AE-GDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHH--HC-CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34444444 45 99999999999997764444444444455555444
No 411
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.75 E-value=1.1e+02 Score=23.45 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
|+-+.=-+.+......+. .++....-+|.+|.++|+..+|.+.+++|.+-.
T Consensus 100 ~kkDqLdki~~~l~kn~~-~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKNEE-INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 444443334444443222 357889999999999999999999999997653
No 412
>KOG4151|consensus
Probab=50.43 E-value=46 Score=32.45 Aligned_cols=59 Identities=22% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCcc
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYE 247 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~~~ 247 (259)
++.|+|.+++.-..-|+...| ....+.+-.+.+|..+++++-|++.+.-...+.|.+.+
T Consensus 104 ~~l~~~~~~~~E~~la~~~~p-~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 104 LGLGEYPKAIPECELALESQP-RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred cCccchhhhcCchhhhhhccc-hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 446999999999999999999 67788888999999999999999998888899998854
No 413
>KOG3783|consensus
Probab=49.48 E-value=2.3e+02 Score=26.67 Aligned_cols=79 Identities=15% Similarity=0.032 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH----hHH
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE----NQL 216 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~----~~~ 216 (259)
...+.+.+.....|+++.-....++.+... |+.+.|+..++.+++ + .+-+ .++
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~--------------------g~~eaa~~~~~~~v~--~-~~kQ~~~l~~f 307 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIK--------------------GNSEAAIDMESLSIP--I-RMKQVKSLMVF 307 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHc--------------------ccHHHHHHHHHhccc--H-HHHHHHHHHHH
Confidence 345666777788999998888888877654 557888888888887 3 3333 367
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 217 LIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 217 ~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.+|.++..+.++..|-..+.......
T Consensus 308 E~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 308 ERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 78888888888888888877766543
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.03 E-value=2.9e+02 Score=27.72 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC----ChHH
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPD-----VLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN----NSNT 115 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~----~~~~ 115 (259)
|+.++|.++.+.++..-|.+.. ++..+|.+....|++ .+|+.+.+.+.++.-. .-..
T Consensus 472 ~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~--------------~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 472 GDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGEL--------------TQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred CCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchH--------------HHHHHHHHHHHHHHHHcccHHHHH
Confidence 8999999999999988776533 333445555555544 4888888877777332 2222
Q ss_pred HHHH--HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcH
Q psy9159 116 QKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA 193 (259)
Q Consensus 116 ~~~l--a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 193 (259)
|..+ +.++...|+..-. ............-+.-.|-+....-..+.++..- -++
T Consensus 538 ~~~~~~s~il~~qGq~~~a----~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~--------------------~r~ 593 (894)
T COG2909 538 WSLLQQSEILEAQGQVARA----EQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW--------------------LRL 593 (894)
T ss_pred HHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH--------------------HHH
Confidence 2222 2333334421100 0000011122233334444433332222222110 113
Q ss_pred HHHHHHHHHHHhh----CCCCcHH---hHHHHHHHHHHhCCHHHHHHHHHHHhcCCC
Q psy9159 194 EDAIANCLKAEEL----APAPWKE---NQLLIAKCYIEAGEYAKAVQWLDKAKAIPV 243 (259)
Q Consensus 194 ~eAi~~~~kAi~l----~P~~~~~---~~~~la~~~~~~g~~~eA~~~~~kal~l~p 243 (259)
+.+.....+.+++ .| .... +.+.|+.++...|+.++|...++....+--
T Consensus 594 ~~~~~ear~~~~~~~~~~~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 594 DLAEAEARLGIEVGSVYTP-QPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhhHHhhhcchhhhhccc-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4444444444443 34 2222 234789999999999999988888766443
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=48.12 E-value=43 Score=29.65 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
+..-+|+-+++.++..+|.|.+....+.++|..+|-..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~ 234 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGS 234 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHH
Confidence 56778889999999999999999999999999999754
No 416
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.94 E-value=22 Score=24.15 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHhhCC
Q psy9159 191 PTAEDAIANCLKAEELAP 208 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P 208 (259)
+-|+.|..+..+|+..+-
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 457889999999998875
No 417
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=47.82 E-value=2e+02 Score=25.45 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhchhccc--CcHHHHHHHHHHHHHHHHHHHHh
Q psy9159 65 PDVLYRLAKACHCLYDIKRRE--NDKEASEKYILQGIEYAKKAMEL 108 (259)
Q Consensus 65 ~~~~~~la~~~~~~g~~~~~~--~~~~~~~~~~~~A~~~~~kal~~ 108 (259)
.-+++++|.++.++|...... .+..+....+..|..+|+...+.
T Consensus 107 a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~ 152 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLREN 152 (377)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 356777787777776533111 11123344555666555555554
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.20 E-value=71 Score=25.30 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
+..+..++..++.+...| ++.++.+++.++...|+.+ +|....+++..+-|.+
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~--------------eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPE--------------EARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhCCcH
Confidence 345556677788888888 5788899999999999875 9999999999999943
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.96 E-value=49 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.0
Q ss_pred CcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 210 PWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 210 ~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+...+++..-..|..+|++++|.++.++..+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456678888889999999999999887754
No 420
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=45.55 E-value=1.2e+02 Score=22.30 Aligned_cols=35 Identities=6% Similarity=-0.048 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhh
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLY 79 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 79 (259)
+.....+.+++.++..++.++.++..+...|...+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 78999999999999999999999999999987654
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.17 E-value=62 Score=28.64 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
+..-+|+-.++.++..+| ++....+.|-.+|..+|-...|.+.|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~-~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSP-HNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 557899999999999999 8899999999999999999999998865
No 422
>KOG1464|consensus
Probab=45.02 E-value=75 Score=27.33 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHH----hHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKE----NQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~----~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
...++|+.-|++.+++.| .-.+ +.-.+-.+.+.++++++-.+.|++.+.
T Consensus 41 ~~p~~Al~sF~kVlelEg-EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEG-EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 568999999999999998 4333 355667889999999999999887764
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.80 E-value=49 Score=27.59 Aligned_cols=49 Identities=27% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCC-----CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 193 AEDAIANCLKAEELAP-----APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P-----~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
-...|+.+++|++.-. ..-......+|.-|+..|++++|++.|+++...
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455666666666432 112344678999999999999999999999543
No 424
>KOG2581|consensus
Probab=41.98 E-value=2.4e+02 Score=25.79 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHHHhhC--C-CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 191 PTAEDAIANCLKAEELA--P-APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~--P-~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
+-|+.|-+...++.--+ . +.+.+..+++|.+..-+++|..|.+++-.|+...|.+
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 44677766666665211 1 1345557788888888889999999999888888863
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.55 E-value=1.5e+02 Score=21.84 Aligned_cols=30 Identities=7% Similarity=0.013 Sum_probs=23.4
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHh
Q psy9159 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEI 170 (259)
Q Consensus 141 ~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~ 170 (259)
....+++..+..+|.++..+..+...|.+.
T Consensus 25 ~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 25 ELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 345778888888888888888888877654
No 426
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=40.50 E-value=1.8e+02 Score=22.81 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhccCCch-----hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9159 3 SKLFVLSLFQFAFVQFGECAELFAVNNSKY-----PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHC 77 (259)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 77 (259)
+-+.++|.+.++|............-.++. .+.+..+ +. -...+|+.....-. +.-...+ +..+...
T Consensus 5 a~LIi~s~~~~G~~~a~~~~~R~~~L~~l~~~l~~L~~EI~Y--~~-tpL~ea~~~i~~~~---~~~~~~~--f~~~a~~ 76 (170)
T TIGR02833 5 ALLIVLSSTWIGFLYANRFKERPRQLRQLINALQSLEAEIVY--GH-TPLPEAFKKIALKS---PKPVNLL--FESASER 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC-CcHHHHHHHHHhhc---chhHHHH--HHHHHHH
Confidence 345677777777777666655554433332 2222223 33 45666665554421 1112222 2222222
Q ss_pred hhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH-HHHHHHHHHHHccCCCC
Q psy9159 78 LYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG-VVFRDQMNKAIQMAPKD 156 (259)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~a~~~~~kAl~l~P~~ 156 (259)
+.... ...-..-++++.+-+.+-..+.+++-+....+|..++..+... -.+.+... .......++|.+.-..+
T Consensus 77 L~~~~-----g~s~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e~-Q~k~i~L~~~~L~~~~~~a~~~~~k~ 150 (170)
T TIGR02833 77 LKEGE-----GLTVYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDREG-QQKHINLTLEHLERQLTEAEDEQKKN 150 (170)
T ss_pred HHhCC-----CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22110 0011233556666666667778888888888888887653222 11111111 11233445555666667
Q ss_pred hhHHHHHHHHH
Q psy9159 157 FTLYSLKGRYQ 167 (259)
Q Consensus 157 ~~~~~~lG~~~ 167 (259)
...|..||.+.
T Consensus 151 ~Kmy~~LGvl~ 161 (170)
T TIGR02833 151 EKMYRYLGVLV 161 (170)
T ss_pred ccHHHHHHHHH
Confidence 77888888643
No 427
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=40.08 E-value=2.7e+02 Score=24.68 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhc
Q psy9159 66 DVLYRLAKACHCLYD 80 (259)
Q Consensus 66 ~~~~~la~~~~~~g~ 80 (259)
.++|++|.++.++|.
T Consensus 107 ~VLfNigal~sq~a~ 121 (355)
T cd09241 107 NILYNLGALYSQLAL 121 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777777664
No 428
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.87 E-value=2.1e+02 Score=23.34 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC-ccchhhhh
Q psy9159 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS-YESHDLST 253 (259)
Q Consensus 194 ~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~-~~~~~~~~ 253 (259)
++|..-|.++-.-.-=+.++-.+.||..|. ..+.++|+..+.+++++.+.+ .-+.++..
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 677777776644322123566777887776 778899999999999988776 44665554
No 429
>KOG0687|consensus
Probab=39.55 E-value=2.7e+02 Score=24.65 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC--ChhHHHHHHHHH
Q psy9159 90 ASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK--DFTLYSLKGRYQ 167 (259)
Q Consensus 90 ~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~--~~~~~~~lG~~~ 167 (259)
++++.++++++-.++-+ =+..-.+++...|..+.+.|+-+++.+.. ...+++++.+.-. -..+...+|.+|
T Consensus 82 eki~eld~~iedaeenl-GE~ev~ea~~~kaeYycqigDkena~~~~------~~t~~ktvs~g~kiDVvf~~iRlglfy 154 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENL-GESEVREAMLRKAEYYCQIGDKENALEAL------RKTYEKTVSLGHKIDVVFYKIRLGLFY 154 (393)
T ss_pred HHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhccHHHHHHHH------HHHHHHHhhcccchhhHHHHHHHHHhh
Confidence 45555555555444331 13345678888899899999887655432 3556777665433 334456677666
Q ss_pred HHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHH---hHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 168 YEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKE---NQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~---~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
... .-..+.|+-.+..++-.. +|-+ ...+-|...+...+|.+|-..|-.++..
T Consensus 155 ~D~--------------------~lV~~~iekak~liE~Gg-DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 155 LDH--------------------DLVTESIEKAKSLIEEGG-DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred ccH--------------------HHHHHHHHHHHHHHHhCC-ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 432 113455555555555555 5532 2344566777778899998888777654
No 430
>KOG2908|consensus
Probab=38.96 E-value=1.5e+02 Score=26.30 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhhc-----CCCCHHHHH--HHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy9159 45 DDKAKAYNLTMELNNK-----QPNDPDVLY--RLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQK 117 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~-----~p~~~~~~~--~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~ 117 (259)
++.++|+..+++.+.. .| ++-++. ..|+++...|+.. ...+.+++..........+.|+-..-++
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L~i~DLk-------~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKLEINDLK-------EIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 7899999999988763 23 233333 3455555555443 5566677888888888888886666667
Q ss_pred HHHHHHH-Hhhchh
Q psy9159 118 WYGICVG-ANGQFQ 130 (259)
Q Consensus 118 ~la~~~~-~~~~~~ 130 (259)
+++.-+. ..|++.
T Consensus 161 ~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHhHH
Confidence 7765554 345544
No 431
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.66 E-value=55 Score=22.00 Aligned_cols=44 Identities=14% Similarity=-0.094 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCC
Q psy9159 193 AEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245 (259)
Q Consensus 193 ~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~p~~ 245 (259)
-..|+...++|++.|-.... -....-|.+|++.|..++...|++
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y---------~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRF---------QEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred hHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHhhCCCH
Confidence 46788888888887752211 112223567777777777776543
No 432
>KOG2114|consensus
Probab=38.49 E-value=3e+02 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHh
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA 225 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~ 225 (259)
++|++|+.++.. +.|....+.....|..+...
T Consensus 504 ~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h 535 (933)
T KOG2114|consen 504 HNYEEALRYISS---LPISELLRTLNKYGKILLEH 535 (933)
T ss_pred cCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh
Confidence 778888888764 34412223344455555443
No 433
>KOG2062|consensus
Probab=38.35 E-value=2.5e+02 Score=27.72 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHH---HHhCCCChHHHHHHHHHHHHhhchhh-HHHHHh
Q psy9159 62 PNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA---MELAPNNSNTQKWYGICVGANGQFQS-LKEKIK 137 (259)
Q Consensus 62 p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ka---l~~~P~~~~~~~~la~~~~~~~~~~~-~~~~~~ 137 (259)
|+.-.+-....++|+.+|.+. +|+++..++ +..++++.-.....+.+ ...+.. ..+.++
T Consensus 56 ~er~~AaL~~SKVyy~Lgeye--------------~Al~yAL~ag~~F~Vd~~S~y~etivak~---id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 56 PERQLAALLASKVYYYLGEYE--------------DALEYALRAGDDFDVDENSDYVETIVAKC---IDMYIETASETYK 118 (929)
T ss_pred chhHHHHHHHHHHHHHHHHHH--------------HHHHHHHcCCccccccCccchhhHHHHHH---HHHHHHHHHHHhc
Confidence 444444456788999999875 888888777 45555544333222222 211110 000000
Q ss_pred -------cHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHH-------------HHh--cCCCCCcHHH
Q psy9159 138 -------CGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAV-------------LIV--SDLDEPTAED 195 (259)
Q Consensus 138 -------~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~g~~~e 195 (259)
.-.+.....++.++..-++...+..+|.. ++..++..+++++-. ... ...-..+ .+
T Consensus 119 ~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia-~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR-~~ 196 (929)
T KOG2062|consen 119 NPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIA-FETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFR-NK 196 (929)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHH-hhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHH-HH
Confidence 01123445566666666666777777753 232233323322110 000 0000011 12
Q ss_pred HHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 196 AIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 196 Ai~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
-+...-+.+.--| ..-|+.+..||+.+.+-+.+.+.+++.++
T Consensus 197 vlr~lv~~y~~~~---~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 197 VLRLLVKTYLKLP---SPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHHHHHccCC---CCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 2223323322223 12367788888888888888888888877
No 434
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=38.22 E-value=2e+02 Score=22.61 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCch-----hHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q psy9159 4 KLFVLSLFQFAFVQFGECAELFAVNNSKY-----PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCL 78 (259)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 78 (259)
-+.++|.+.++|............-.++. .+.+..+ +. -...+|+.....- .+.-...+ +..+...+
T Consensus 7 ~LIi~s~~~~G~~~a~~~~~R~~~L~~l~~~l~~L~~EI~Y--~~-tpL~ea~~~i~~~---~~~~~~~~--f~~~a~~L 78 (171)
T PRK08307 7 VLIIAASTWIGFLYAKRYKERPRQLRELKAALQSLEAEIMY--GH-TPLPEALENIAKQ---SPKPISTL--FQRFSERL 78 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC-CcHHHHHHHHHHc---cchhHHHH--HHHHHHHH
Confidence 35566666666666665555443333221 2222222 33 4566665554432 12112222 22222222
Q ss_pred hchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH-HHHHHHHHHHHccCCCCh
Q psy9159 79 YDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG-VVFRDQMNKAIQMAPKDF 157 (259)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~a~~~~~kAl~l~P~~~ 157 (259)
.... ...-..-++++.+-+.+...+.+++-+....+|..++..+... -.+.+... .......++|-+.-..+.
T Consensus 79 ~~~~-----g~s~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e~-Q~k~i~L~~e~L~~~~~~a~~~~~k~~ 152 (171)
T PRK08307 79 ESGE-----GETAYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDREG-QQKHIRLALEHLEREEEEAEEEQKKNE 152 (171)
T ss_pred HhCC-----CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2110 0012234567777777777888889999989988887654322 11111111 122334455666666777
Q ss_pred hHHHHHHHHH
Q psy9159 158 TLYSLKGRYQ 167 (259)
Q Consensus 158 ~~~~~lG~~~ 167 (259)
..|..+|.+.
T Consensus 153 Kmy~~LGvl~ 162 (171)
T PRK08307 153 KMYKYLGFLA 162 (171)
T ss_pred cHHHHHHHHH
Confidence 8888888653
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=37.62 E-value=64 Score=16.81 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 214 NQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 214 ~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.|..+-.++.+.|+++.|.+.++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356677888999999999999887655
No 436
>KOG2997|consensus
Probab=37.54 E-value=51 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHh
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKEN 214 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~ 214 (259)
.|...+||..|..|+++-| + ++.
T Consensus 32 ~G~l~dai~fYR~AlqI~~-d-iEs 54 (366)
T KOG2997|consen 32 DGSLYDAINFYRDALQIVP-D-IES 54 (366)
T ss_pred cCcHHHHHHHHHhhhcCCc-h-HHH
Confidence 4899999999999999988 4 544
No 437
>PF13041 PPR_2: PPR repeat family
Probab=37.15 E-value=89 Score=18.37 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHHHhhC--CCCcHHhHHHHHH
Q psy9159 191 PTAEDAIANCLKAEELA--PAPWKENQLLIAK 220 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~--P~~~~~~~~~la~ 220 (259)
|++++|.+.|++..+.. | +...|..+-.
T Consensus 17 ~~~~~a~~l~~~M~~~g~~P--~~~Ty~~li~ 46 (50)
T PF13041_consen 17 GKFEEALKLFKEMKKRGIKP--DSYTYNILIN 46 (50)
T ss_pred cCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Confidence 88999999999999864 5 3444544433
No 438
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.93 E-value=1.3e+02 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHhhC----CCCcHHhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 191 PTAEDAIANCLKAEELA----PAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~----P~~~~~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
..-..++..|.+||... -++....|.++|-.|.+.+++.+|+...-+|
T Consensus 293 ~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 293 PGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 33455677788887752 2244667899999999999999999988776
No 439
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=35.67 E-value=1.9e+02 Score=21.70 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHHHhhCCCC--------------cHHhHHHHHHHHHHhCCHHHHHHHHHHH----hcCCCCCc
Q psy9159 191 PTAEDAIANCLKAEELAPAP--------------WKENQLLIAKCYIEAGEYAKAVQWLDKA----KAIPVVSY 246 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~--------------~~~~~~~la~~~~~~g~~~eA~~~~~ka----l~l~p~~~ 246 (259)
++.-.+|-+|+.|+.+..+- ++...-+||..+..+|+.+-.+++++-| +.+-|.=+
T Consensus 15 ~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 15 ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 66777888888887764211 0123578999999999999999998755 55666543
No 440
>KOG0276|consensus
Probab=35.67 E-value=1.3e+02 Score=28.81 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 191 g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
|+++.|.+...++ +...-|..||.+-...+++..|.+++.++..+.
T Consensus 651 grl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 651 GRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred CcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 6777765544333 235568889999999999999999999886653
No 441
>KOG2114|consensus
Probab=35.65 E-value=4.7e+02 Score=26.27 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=80.5
Q ss_pred chhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHh-C
Q psy9159 31 KYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL-A 109 (259)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~-~ 109 (259)
.-.+.+.++ .. .-|+-|+.+.+.-- .+ ++. ++.+....|++- .+.+++++|..+|-++|.. +
T Consensus 337 le~kL~iL~--kK-~ly~~Ai~LAk~~~-~d---~d~---~~~i~~kYgd~L-------y~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 337 LETKLDILF--KK-NLYKVAINLAKSQH-LD---EDT---LAEIHRKYGDYL-------YGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHH--Hh-hhHHHHHHHHHhcC-CC---HHH---HHHHHHHHHHHH-------HhcCCHHHHHHHHHHHcccCC
Confidence 345667777 55 77888888776642 12 222 233333444333 3344456888888888753 3
Q ss_pred CCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCC
Q psy9159 110 PNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189 (259)
Q Consensus 110 P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (259)
|.. + ....-+... ......+++..++-.-.+..--..|=.+|.++++.+.....+..--.|. -
T Consensus 400 ~s~--V-------i~kfLdaq~-------IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~-~ 462 (933)
T KOG2114|consen 400 PSE--V-------IKKFLDAQR-------IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGE-W 462 (933)
T ss_pred hHH--H-------HHHhcCHHH-------HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcc-e
Confidence 321 1 111111111 1122345555555444444444455556766666544433332100000 0
Q ss_pred CCcHHHHHHHHHHH------HhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHH
Q psy9159 190 EPTAEDAIANCLKA------EELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237 (259)
Q Consensus 190 ~g~~~eAi~~~~kA------i~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~k 237 (259)
.=+.+.|++.+.++ .-+.... ...-..+=..+..++++++|++++..
T Consensus 463 ~fd~e~al~Ilr~snyl~~a~~LA~k~-~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 463 FFDVETALEILRKSNYLDEAELLATKF-KKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred eeeHHHHHHHHHHhChHHHHHHHHHHh-ccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence 01255555544443 1111100 00011233466778999999998864
No 442
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.46 E-value=1.2e+02 Score=28.84 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHHcc-----CCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhh
Q psy9159 142 FRDQMNKAIQM-----APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206 (259)
Q Consensus 142 a~~~~~kAl~l-----~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l 206 (259)
..+.|.+||.. +-.|.-.|..+|..|++. ++|.+|+.++-+|-+.
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~--------------------~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRH--------------------KRYREALRSWAEAADV 347 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 45666777653 444556678888888775 5667777766666554
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=1e+02 Score=26.86 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhh----CC-CCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 193 AEDAIANCLKAEEL----AP-APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 193 ~~eAi~~~~kAi~l----~P-~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
-++-|+.+.+.|+- |. ..-.+++.++|..|...++.+.+.+++++.++-
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45555566555443 31 122678999999999999999999999987654
No 444
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=33.92 E-value=2.3e+02 Score=22.11 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcH-HHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCG-VVFRDQMNKAIQMAPKDFTLYSLKGRYQ 167 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~a~~~~~kAl~l~P~~~~~~~~lG~~~ 167 (259)
-++++.+.+.+...+.+++-+....+|..++...... -.+.+... .......++|.+--..+...|..+|...
T Consensus 88 ~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~-Q~k~i~l~~~~L~~~~~~a~~~~~~~~Klyr~LGvl~ 161 (170)
T PF09548_consen 88 AWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREM-QEKHIELYLEQLEQQLEEAREEAKKKGKLYRSLGVLG 161 (170)
T ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4556666666666778888888888888887654322 11111111 1233455666666777778888888643
No 445
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=33.68 E-value=78 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhcCCCC
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKAIPVV 244 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~l~p~ 244 (259)
...+|..+...|++++|...|-+|+..-|.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 355777777778888888888888777654
No 446
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=33.67 E-value=4.3e+02 Score=25.25 Aligned_cols=157 Identities=16% Similarity=0.027 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC--CChHHHHHH
Q psy9159 46 DKAKAYNLTMELNNKQPND----PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP--NNSNTQKWY 119 (259)
Q Consensus 46 ~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P--~~~~~~~~l 119 (259)
=...|+..++-+++..+=. +-+.+++|.++..- ..+++.|+.++.|++.+.. +..+..+..
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-------------T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-------------TENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3446788888887533322 33445555555532 1235699999999988874 443333333
Q ss_pred HHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC-ChhHH---HHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHH
Q psy9159 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK-DFTLY---SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED 195 (259)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~-~~~~~---~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e 195 (259)
..++.+.-.-.+.. .++..++++|+.--+ ....| +.+-++.+.+. .+++..
T Consensus 103 ~~ll~~i~~~~~~~-------~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~------------------~~d~~~ 157 (608)
T PF10345_consen 103 QFLLARIYFKTNPK-------AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ------------------HKDYNA 157 (608)
T ss_pred HHHHHHHHHhcCHH-------HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh------------------cccHHH
Confidence 33332222111111 145666666665443 11222 22222221110 168899
Q ss_pred HHHHHHHHHhhC--CCCc-HHhH--HHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 196 AIANCLKAEELA--PAPW-KENQ--LLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 196 Ai~~~~kAi~l~--P~~~-~~~~--~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
|++.+++...+. +.+. ..+. +..|.+....+..+++++..+++..
T Consensus 158 Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 158 ALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 999999998875 2121 2222 3335555566777888888887733
No 447
>KOG2758|consensus
Probab=33.64 E-value=3.4e+02 Score=24.05 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 174 SFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 174 ~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+|..|.++.++.. .+.+...+++-+-|.|+.....+...-..--.|+.-.=+|++|.+.++++-+
T Consensus 252 PhllRYLatAvvt--nk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCee 316 (432)
T KOG2758|consen 252 PHLLRYLATAVVT--NKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEE 316 (432)
T ss_pred HHHHHHHHHHhhc--chHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 4555665555442 1356788888899999876422233334445677777899999988887754
No 448
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=32.94 E-value=3.4e+02 Score=23.88 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+++.|......+++.+++..++.|..
T Consensus 258 ~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 258 EYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 34455555555666666666665544
No 449
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.96 E-value=3.9e+02 Score=25.56 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=36.2
Q ss_pred CchhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchh
Q psy9159 30 SKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIK 82 (259)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 82 (259)
+++.++..+. +.+..+.|..+|++.+..+|+ +.++..|+-+...|-.+
T Consensus 44 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (578)
T PRK15490 44 AMLKKAEFLH---DVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAK 91 (578)
T ss_pred HHHHHhhhhh---hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhh
Confidence 4566665555 459999999999999999998 55667777777766544
No 450
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.14 E-value=3.6e+02 Score=23.55 Aligned_cols=52 Identities=21% Similarity=0.124 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHHh----h--CCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Q psy9159 190 EPTAEDAIANCLKAEE----L--APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~----l--~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~l~ 242 (259)
.|+|.+|+....-.+. . .| ....+++.=..+|....+..++...+.-|..+.
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~-~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKI-NLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCcc-ceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 4889999887655443 2 24 446678888899999999988888777665443
No 451
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=31.01 E-value=1.5e+02 Score=25.74 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.+++.+.++..++.+..+| +|.+.++..+.++.++| ++++.+..+..+.
T Consensus 112 ~~~~~~Ll~~~E~sl~~~p-fWLDgq~~~~qal~~lG-~~~~a~aI~~el~ 160 (301)
T TIGR03362 112 QADWAALLQRVEQSLSLAP-FWLDGQRLSAQALERLG-YAAVAQAIRDELA 160 (301)
T ss_pred CCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHHHHHCC-CHHHHHHHHHHHH
No 452
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=30.80 E-value=4.5e+02 Score=24.56 Aligned_cols=50 Identities=8% Similarity=-0.124 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+|++.-|-..|+-.+.-.| +....-...-..++..++-..|...|+++++
T Consensus 445 ~~d~~ta~~ifelGl~~f~-d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFP-DSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCC-CchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 5777777788887777777 3332222233456667777777777776654
No 453
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=30.75 E-value=3.6e+02 Score=23.46 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhchhccc---CcHHHHHHHHHHHHHHHHHHHH
Q psy9159 66 DVLYRLAKACHCLYDIKRRE---NDKEASEKYILQGIEYAKKAME 107 (259)
Q Consensus 66 ~~~~~la~~~~~~g~~~~~~---~~~~~~~~~~~~A~~~~~kal~ 107 (259)
.+++++|.++..+|.-.... .+.......+..|..+|+...+
T Consensus 112 ~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~ 156 (345)
T cd09034 112 SILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKE 156 (345)
T ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776666432110 1122334555666666655543
No 454
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.92 E-value=1.6e+02 Score=18.84 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 89 EASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 89 ~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.+....+.+|++.+..++...|+.
T Consensus 22 ~~A~~~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 22 EEALELYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCH
Confidence 377888889999999999999753
No 455
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=28.82 E-value=76 Score=26.03 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHhhhh
Q psy9159 1 MYSKLFVLSLFQFAFVQFGE 20 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (259)
+|||+|++-|.-+.-...+.
T Consensus 137 ~YSRl~AIGL~~LLe~a~~~ 156 (214)
T TIGR03060 137 KYSRLFAIGLYSLLEEAAPD 156 (214)
T ss_pred chHHHHHHHHHHHHHhcCcc
Confidence 59999988887555544443
No 456
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.82 E-value=1.8e+02 Score=19.68 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCC
Q psy9159 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAP 110 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P 110 (259)
+.|++|+....+++..+.. +++++.+..|..|+..+.+++.+.-
T Consensus 3 ~~~~~A~~~I~kaL~~dE~----------------------g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 3 GYYKQAFEEISKALRADEW----------------------GDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred hHHHHHHHHHHHHhhhhhc----------------------CCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567777777777664432 2344556666777777777777764
No 457
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=27.38 E-value=84 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=12.0
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy9159 1 MYSKLFVLSLFQFAFVQ 17 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (259)
+|||+|++-|+-+.-..
T Consensus 136 ~YSRl~AIGL~~LLe~a 152 (206)
T PLN03060 136 HYSRFFAIGLFRLLECA 152 (206)
T ss_pred chHHHHHHHHHHHHHHc
Confidence 59999888777554443
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.19 E-value=78 Score=25.46 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=10.7
Q ss_pred CCcHHHHHHHHHHHHhhCC
Q psy9159 190 EPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P 208 (259)
.|.+++|.+.+++-.+ +|
T Consensus 124 ~g~Fk~A~eiLkr~~~-d~ 141 (200)
T cd00280 124 NGEFKKAEEVLKRLFS-DP 141 (200)
T ss_pred cCchHHHHHHHHHHhc-CC
Confidence 4566666666666655 55
No 459
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=26.94 E-value=1.3e+02 Score=16.91 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHhCC---HHHHHHHHHHHhcCCC
Q psy9159 213 ENQLLIAKCYIEAGE---YAKAVQWLDKAKAIPV 243 (259)
Q Consensus 213 ~~~~~la~~~~~~g~---~~eA~~~~~kal~l~p 243 (259)
+..+++|+++++-.. ..+.+..++..+...|
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 457889999998875 4577888887776554
No 460
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.54 E-value=3.9e+02 Score=22.46 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Q psy9159 45 DDKAKAYNLTMELNN-----KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119 (259)
Q Consensus 45 ~~~~~A~~~~~~~~~-----~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~~~~l 119 (259)
|++.-|.++..-.++ ..|.+.+..-++..+....... ..++....++|+.+. +.-.-.-.++..|..+
T Consensus 24 ~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~------~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~ 96 (260)
T PF04190_consen 24 GQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE------EPERKKFIKAAIKWS-KFGSYKFGDPELHHLL 96 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-------TTHHHHHHHHHHHH-HTSS-TT--HHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC------cchHHHHHHHHHHHH-ccCCCCCCCHHHHHHH
Confidence 777777665444433 2345555556666666655422 124677788888888 4334444688999999
Q ss_pred HHHHHHhhchhhHHH
Q psy9159 120 GICVGANGQFQSLKE 134 (259)
Q Consensus 120 a~~~~~~~~~~~~~~ 134 (259)
|..+...+++..+..
T Consensus 97 a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 97 AEKLWKEGNYYEAER 111 (260)
T ss_dssp HHHHHHTT-HHHHHH
T ss_pred HHHHHhhccHHHHHH
Confidence 999999888875543
No 461
>KOG2041|consensus
Probab=26.08 E-value=6.6e+02 Score=24.97 Aligned_cols=140 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHhhc
Q psy9159 51 YNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT--QKWYGICVGANGQ 128 (259)
Q Consensus 51 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~~~~~--~~~la~~~~~~~~ 128 (259)
++-..+.++.+|+ |..|..+|..... .-++...+.|.-.-.+.+.+ -..++-+++...+
T Consensus 679 ledA~qfiEdnPH-prLWrllAe~Al~------------------Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q 739 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH-PRLWRLLAEYALF------------------KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQ 739 (1189)
T ss_pred hHHHHHHHhcCCc-hHHHHHHHHHHHH------------------HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHH
Q ss_pred hhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHHhhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhhCC
Q psy9159 129 FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 129 ~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~eAi~~~~kAi~l~P 208 (259)
..++....+..+++.+.| |+.|..+-.+-..+-. |++-...+.++..-.-+.
T Consensus 740 ~aei~~~~g~feeaek~y---ld~drrDLAielr~kl-------------------------gDwfrV~qL~r~g~~d~d 791 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLY---LDADRRDLAIELRKKL-------------------------GDWFRVYQLIRNGGSDDD 791 (1189)
T ss_pred hHhHhhhhcchhHhhhhh---hccchhhhhHHHHHhh-------------------------hhHHHHHHHHHccCCCcc
Q ss_pred CCcH--HhHHHHHHHHHHhCCHHHHHHHHHHH
Q psy9159 209 APWK--ENQLLIAKCYIEAGEYAKAVQWLDKA 238 (259)
Q Consensus 209 ~~~~--~~~~~la~~~~~~g~~~eA~~~~~ka 238 (259)
+.. .++.++|..+..+..+++|.++|.+.
T Consensus 792 -D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 792 -DEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 462
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.84 E-value=3.9e+02 Score=23.84 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHH
Q psy9159 118 WYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRY 166 (259)
Q Consensus 118 ~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~ 166 (259)
.-|-++.++|... ++...|++|+.+.++..+.-+.+++.
T Consensus 370 ~RadlL~rLgr~~----------eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 370 ARADLLARLGRVE----------EARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHHHhCChH----------HHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444555555544 67789999999999998887777664
No 463
>KOG0687|consensus
Probab=25.17 E-value=1.7e+02 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
.+++.+.|..|+..|+.+.|.+++++..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 57899999999999999999999988754
No 464
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=24.72 E-value=1.2e+02 Score=17.84 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHHhhc
Q psy9159 144 DQMNKAIQMAPKDFTLYSLKGRYQYEISK 172 (259)
Q Consensus 144 ~~~~kAl~l~P~~~~~~~~lG~~~~~~~~ 172 (259)
..+.+||--+|++.......+.|+-+.|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gd 31 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGD 31 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCC
Confidence 45688999999999999999999977643
No 465
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=24.50 E-value=80 Score=17.81 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy9159 5 LFVLSLFQFAFVQFGEC 21 (259)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (259)
+|++||+.++|++.-+.
T Consensus 13 ~ffv~LFifGflsnDp~ 29 (36)
T PF02532_consen 13 IFFVSLFIFGFLSNDPG 29 (36)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhccccCCCCC
Confidence 46677777777665443
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.04 E-value=2.8e+02 Score=19.97 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=41.4
Q ss_pred cCCchhHHHHHhhcCCcCCHHHHHHH----HHHHhhc-CCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHH
Q psy9159 28 NNSKYPEIDRLLYYGKKDDKAKAYNL----TMELNNK-QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA 102 (259)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~A~~~----~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~ 102 (259)
-+-....+-..+. ++ ...+.-... ++++-.. -|--|-.+-.||..|...|..+ .|..-|
T Consensus 32 w~gYq~tvyEy~K-~~-es~e~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e--------------~a~~eF 95 (121)
T COG4259 32 WEGYQDTVYEYFK-GD-ESKEAQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDE--------------QAVREF 95 (121)
T ss_pred cCCccHHHHHHHc-CC-CCHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChH--------------HHHHHH
Confidence 3444555666663 32 333333333 3333222 3445677778999999999764 666666
Q ss_pred HHHHHhCCCChH
Q psy9159 103 KKAMELAPNNSN 114 (259)
Q Consensus 103 ~kal~~~P~~~~ 114 (259)
+.=-++-|++..
T Consensus 96 etEKalFPES~~ 107 (121)
T COG4259 96 ETEKALFPESGV 107 (121)
T ss_pred HHhhhhCccchh
Confidence 666667777654
No 467
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=23.16 E-value=88 Score=17.72 Aligned_cols=11 Identities=45% Similarity=0.615 Sum_probs=8.0
Q ss_pred hHHHHHHHHHH
Q psy9159 3 SKLFVLSLFQF 13 (259)
Q Consensus 3 ~~~~~~~~~~~ 13 (259)
||+|+.||-.-
T Consensus 3 sKl~l~CLA~a 13 (37)
T PF11131_consen 3 SKLFLICLAAA 13 (37)
T ss_pred hhHHHHHHHHH
Confidence 78988887643
No 468
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=22.84 E-value=1.4e+02 Score=24.45 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=26.6
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 212 ~~~~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+++++..|.|+..+|+..+|++.++++.+
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999875
No 469
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.76 E-value=8.1e+02 Score=24.80 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHHhhCCCCc----HHhHHHHHHHHHHhCCHHHHHHHHHHHhcC
Q psy9159 190 EPTAEDAIANCLKAEELAPAPW----KENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~----~~~~~~la~~~~~~g~~~eA~~~~~kal~l 241 (259)
.|+.++|++..+.+++.-|... ..+...+|.+.+-.|++++|..+...+.++
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 4889999999999999877322 234778899999999999999999888765
No 470
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.62 E-value=2.4e+02 Score=18.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q psy9159 89 EASEKYILQGIEYAKKAMELAPNN 112 (259)
Q Consensus 89 ~~~~~~~~~A~~~~~kal~~~P~~ 112 (259)
.+....+..|++.+.+++..+|+.
T Consensus 23 ~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 23 EEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCH
Confidence 367778889999999999999854
No 471
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=22.60 E-value=3e+02 Score=19.84 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCchhHHHHHhhcCCcCCHHHHHHHHHHHhh
Q psy9159 29 NSKYPEIDRLLYYGKKDDKAKAYNLTMELNN 59 (259)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 59 (259)
.+.+..+.... .+ +++++|.+.+.+..+
T Consensus 29 ~~~l~~i~~~i--~~-~dW~~A~~~~~~l~~ 56 (121)
T PF14276_consen 29 EEQLEQIEEAI--EN-EDWEKAYKETEELEK 56 (121)
T ss_pred HHHHHHHHHHH--Hh-CCHHHHHHHHHHHHH
Confidence 45677787887 67 999999998888765
No 472
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=21.69 E-value=1.5e+02 Score=21.25 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Q psy9159 215 QLLIAKCYIEAGEYAKAVQWLDKAKA 240 (259)
Q Consensus 215 ~~~la~~~~~~g~~~eA~~~~~kal~ 240 (259)
+..|+..|...|..++|++.+.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67788889999999999998888776
No 473
>PRK13266 Thf1-like protein; Reviewed
Probab=21.66 E-value=1.4e+02 Score=24.80 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy9159 1 MYSKLFVLSLFQFAFVQFG 19 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (259)
+|||+|++-|.-+.-...+
T Consensus 139 ~YSRl~AIGL~~LLe~a~~ 157 (225)
T PRK13266 139 KYSRLFAIGLYTLLEEAQP 157 (225)
T ss_pred chHHHHHHHHHHHHHhcCc
Confidence 5999988887755544444
No 474
>KOG3783|consensus
Probab=21.24 E-value=7.1e+02 Score=23.59 Aligned_cols=147 Identities=9% Similarity=-0.030 Sum_probs=82.7
Q ss_pred hhHHHHHhhcCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHHHHHhCCC
Q psy9159 32 YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111 (259)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~kal~~~P~ 111 (259)
+.+....+ +-.|.-.++...+.++-..-+.-+.+-.++...|...-......+.. +.+...+......+..|+
T Consensus 193 i~~~l~vv--gf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~-----d~~~~~~~Ll~~~~~~p~ 265 (546)
T KOG3783|consen 193 ILRLLSVV--GFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNP-----DGEECEKALKKYRKRYPK 265 (546)
T ss_pred HHHHHHHH--hhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCc-----cHHHHHHHhHHHHHhCCC
Confidence 34444455 33477777777766665444555555555555554322211110111 114666777778889999
Q ss_pred ChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCC----ChhHHHHHHHHHHHhhccchHHHHHHHHHhcC
Q psy9159 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK----DFTLYSLKGRYQYEISKLSFFERKIAVLIVSD 187 (259)
Q Consensus 112 ~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~----~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 187 (259)
++.-....+..+...|+.+ .+......++. +. +...++.+|.++.-.
T Consensus 266 ga~wll~~ar~l~~~g~~e----------aa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~----------------- 316 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSE----------AAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQ----------------- 316 (546)
T ss_pred CccHHHHHHHHHHHcccHH----------HHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 9988788888888888733 23344454444 22 112233334333221
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcHHh-HHHHH
Q psy9159 188 LDEPTAEDAIANCLKAEELAPAPWKEN-QLLIA 219 (259)
Q Consensus 188 ~~~g~~~eAi~~~~kAi~l~P~~~~~~-~~~la 219 (259)
.+|..|-..+....+.+ +|+.+ |.+++
T Consensus 317 ---~~~~~aad~~~~L~des--dWS~a~Y~Yfa 344 (546)
T KOG3783|consen 317 ---HQYSRAADSFDLLRDES--DWSHAFYTYFA 344 (546)
T ss_pred ---HHHHHHhhHHHHHHhhh--hhhHHHHHHHH
Confidence 56888888998888877 46665 44444
No 475
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=21.24 E-value=2.1e+02 Score=22.39 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCCCCHHH
Q psy9159 51 YNLTMELNNKQPNDPDV 67 (259)
Q Consensus 51 ~~~~~~~~~~~p~~~~~ 67 (259)
+..++.++..+++.+..
T Consensus 9 LnIL~TL~rld~~~~p~ 25 (164)
T PF07840_consen 9 LNILETLARLDHDSPPE 25 (164)
T ss_dssp GGGHHHHHHHTCTTHHH
T ss_pred hHHHHHHHHhCccccHH
Confidence 44566666667666644
No 476
>KOG4459|consensus
Probab=21.07 E-value=1.8e+02 Score=26.83 Aligned_cols=62 Identities=8% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHHHH
Q psy9159 92 EKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE 169 (259)
Q Consensus 92 ~~~~~~A~~~~~kal~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~~~ 169 (259)
.+.+.+|++...-.+-.+|++-.+..++..-.+.+|... +.+..+.+.....++.+|.-++.
T Consensus 146 ~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~----------------d~l~DlE~~~~~~~Fir~v~~y~ 207 (471)
T KOG4459|consen 146 VGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE----------------DELTDLERREHEQWFIRGVRLYS 207 (471)
T ss_pred hhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc----------------ccccccccchHHHHHHHHhhhcc
Confidence 444568888888888888888877777766655555433 22234555566666666654443
No 477
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.01 E-value=4.8e+02 Score=21.56 Aligned_cols=49 Identities=22% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhh-----CCCCcHH--hHHHHHHHH-HHhCCHHHHHHHHHHHhcC
Q psy9159 193 AEDAIANCLKAEEL-----APAPWKE--NQLLIAKCY-IEAGEYAKAVQWLDKAKAI 241 (259)
Q Consensus 193 ~~eAi~~~~kAi~l-----~P~~~~~--~~~~la~~~-~~~g~~~eA~~~~~kal~l 241 (259)
.++|..+|++|+++ .|.+... ..++.+..| .-+|+.++|++..++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46777777777764 5632211 133344444 4479999999888887653
No 478
>KOG2908|consensus
Probab=20.79 E-value=6.1e+02 Score=22.63 Aligned_cols=78 Identities=6% Similarity=0.053 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhC----CCChHHHHH--HHHHHHHhhchhhHHHHHhcHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy9159 94 YILQGIEYAKKAMELA----PNNSNTQKW--YGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQ 167 (259)
Q Consensus 94 ~~~~A~~~~~kal~~~----P~~~~~~~~--la~~~~~~~~~~~~~~~~~~~~~a~~~~~kAl~l~P~~~~~~~~lG~~~ 167 (259)
..++|+++.++.++.- ..++-.+.. .|.++-..++..++.+.+. +....++....+.|+-..-+|.++.-|
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ld---d~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLD---DLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHH---HHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 3457777777766432 112333322 3444445566665554444 334666777778887777788888766
Q ss_pred HHh-hccc
Q psy9159 168 YEI-SKLS 174 (259)
Q Consensus 168 ~~~-~~~~ 174 (259)
++. +++.
T Consensus 167 yk~~~d~a 174 (380)
T KOG2908|consen 167 YKKIGDFA 174 (380)
T ss_pred HHHHHhHH
Confidence 654 3443
No 479
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.39 E-value=3.5e+02 Score=21.19 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhchhcccCcHHHHHHHHHHHHHHHHH----HHHhCCCChHHHHHHHHH
Q psy9159 47 KAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK----AMELAPNNSNTQKWYGIC 122 (259)
Q Consensus 47 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~k----al~~~P~~~~~~~~la~~ 122 (259)
++++++.+.......+++-+++..+|...-.. |.+...+.++-+++..+. +-+....+...|..+|.+
T Consensus 90 w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~--------D~e~Q~k~i~L~~e~L~~~~~~a~~~~~k~~Kmy~~LGvl 161 (171)
T PRK08307 90 WEKALEENWKNTALKKEDIEILLQFGKTLGQS--------DREGQQKHIRLALEHLEREEEEAEEEQKKNEKMYKYLGFL 161 (171)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHCcC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34444445555667788888888888765443 233444444444444433 334445566677777776
Q ss_pred HH
Q psy9159 123 VG 124 (259)
Q Consensus 123 ~~ 124 (259)
.+
T Consensus 162 ~G 163 (171)
T PRK08307 162 AG 163 (171)
T ss_pred HH
Confidence 55
No 480
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.15 E-value=3.3e+02 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCCh
Q psy9159 96 LQGIEYAKKAMELAPNNS 113 (259)
Q Consensus 96 ~~A~~~~~kal~~~P~~~ 113 (259)
..|.....++-+..++.+
T Consensus 76 ~~A~k~~~~a~~~~~~~~ 93 (108)
T PF07219_consen 76 QRAEKLLAKAAKLSDNPL 93 (108)
T ss_pred HHHHHHHHHHHhcCCCHH
Confidence 388888888866644433
No 481
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.05 E-value=5.1e+02 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.021 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcHHhHHHHHH
Q psy9159 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAK 220 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P~~~~~~~~~la~ 220 (259)
.++...|+.++++|++++| . +.+--.+-.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~-k-~GVK~~i~~ 219 (230)
T PHA02537 191 AETLQLALALLQRAFQLND-K-CGVKKDIER 219 (230)
T ss_pred cccHHHHHHHHHHHHHhCC-C-CChHHHHHH
Confidence 3677899999999999998 3 444333333
No 482
>KOG3616|consensus
Probab=20.04 E-value=9e+02 Score=24.32 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=10.7
Q ss_pred CCcHHHHHHHHHHHHhhCC
Q psy9159 190 EPTAEDAIANCLKAEELAP 208 (259)
Q Consensus 190 ~g~~~eAi~~~~kAi~l~P 208 (259)
.|++++|-++|-.|++++.
T Consensus 1008 egk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred ccchhhhhHhhHHHhhccc
Confidence 3555555555555555554
Done!