RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9159
(259 letters)
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 46.9 bits (111), Expect = 3e-06
Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 25/219 (11%)
Query: 37 RLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
RL + + + LN P++ + LA L+ ++ ++ EK +
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLN---PDNQYLKVLLALK---LHKMREEGEEEGEGEKLV- 236
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
++A+E AP ++ + + + I+ + KA++ P +
Sbjct: 237 ------EEALEKAPGVTDVLRSAAKFYRRKDEPD---KAIEL-------LKKALEYIPNN 280
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
L+ G R+ + L E A+A+ KA+E
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH-AVAHLKKADEANDN-LFRVCS 338
Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDLSTTY 255
++A + A +Y +A + K + + L Y
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377
Score = 39.9 bits (93), Expect = 6e-04
Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 35/235 (14%)
Query: 11 FQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYR 70
+ A + EL ++ EI L+ +G + A Y L++ Q D +
Sbjct: 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWG---NYAWVYYHMGRLSDVQ-IYVDKVKH 122
Query: 71 LAKACHCLYDIKRRENDKEASEKYILQG-------IEYAKKAMELAPNNSNTQKWYGICV 123
+ + Y I+ E D E + G +KA+E P N I
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182
Query: 124 GANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183
+ + I + +AI++ P + L L +++ + E
Sbjct: 183 YRLDNWPPSQNAIDP-------LRQAIRLNPDNQYLKVLLALKLHKMREEGEEE------ 229
Query: 184 IVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
+ +A E AP + AK Y E KA++ L KA
Sbjct: 230 ----------GEGEKLVEEALEKAPGVT-DVLRSAAKFYRRKDEPDKAIELLKKA 273
Score = 33.0 bits (75), Expect = 0.081
Identities = 25/214 (11%), Positives = 52/214 (24%), Gaps = 27/214 (12%)
Query: 38 LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLA-----KACHCLYDIKRRENDKEASE 92
+ D + +E PN+ + ++ K + + K
Sbjct: 257 YRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM 152
+ I + + KKA E N Q+ +E K
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY---EEAEYY-------FQKEFSK 363
Query: 153 APKDF---TLYSLKGRYQYEISK-----LSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204
L+ G +Q K + F + + S E +
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL 423
Query: 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
E ++A + +A + ++
Sbjct: 424 SKNG-ADSEALHVLAFLQELNEKMQQADEDSERG 456
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 59/365 (16%), Positives = 101/365 (27%), Gaps = 167/365 (45%)
Query: 9 SLFQFAFVQFGECAELFAV-----NNSKY-PEIDRLLY--YG------------------ 42
+LF+ G A+L A+ N Y E+ R LY Y
Sbjct: 144 ALFRAV--GEGN-AQLVAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 43 -KKDDKAKAYNLTMELNN--KQPND-PDVLYRLAKA------------CHCLYDIKRREN 86
D K + + + + P++ PD Y L H Y + +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLSIPISCPLIGVIQLAH--YVVTAKLL 256
Query: 87 DKEASE-KYILQGI-----------------------EYAKKAMEL-----------APN 111
E + L+G +KA+ + PN
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 112 NSNTQKWYGICVGANGQ-------------FQSLKEKIKCGVVFRDQMN------KAIQM 152
S + N + + +++ + ++ N K +++
Sbjct: 317 TSLPPSILEDSL-ENNEGVPSPMLSISNLTQEQVQDYV-------NKTNSHLPAGKQVEI 368
Query: 153 A----PKDF-------TLYSL-------KGRYQYEISKLSFFERKIAV----LIV----- 185
+ K+ +LY L K + S++ F ERK+ L V
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 186 SDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVS 245
S L P A D I ++L V + K IPV
Sbjct: 429 SHLLVP-ASDLIN-----KDLV---------------------KNNVSFNAKDIQIPV-- 459
Query: 246 YESHD 250
Y++ D
Sbjct: 460 YDTFD 464
Score = 37.3 bits (86), Expect = 0.005
Identities = 35/202 (17%), Positives = 55/202 (27%), Gaps = 89/202 (44%)
Query: 97 QGIEYAKKAMELAPNNSNTQK--W----------YGICVGANGQFQSLKEKIKCGVVFRD 144
QG + M+L S + W YG S+ + + +
Sbjct: 1624 QGSQEQGMGMDLY-KTSKAAQDVWNRADNHFKDTYGF---------SILD------IVIN 1667
Query: 145 QMNKAIQMAPKDFTLY--SLKGRYQYEISKLSFFE-----RKIAVLIVSDLDE------- 190
P + T++ KG+ E FE + I +++E
Sbjct: 1668 N--------PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 191 --------------P---TAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA----GEY- 228
P E A LK++ L PA A GEY
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD----------ATF-AGHSLGEYA 1768
Query: 229 ---AKA-VQWLDKAKAIPVVSY 246
+ A V + + VV Y
Sbjct: 1769 ALASLADV--MSIESLVEVVFY 1788
Score = 33.5 bits (76), Expect = 0.075
Identities = 36/250 (14%), Positives = 58/250 (23%), Gaps = 102/250 (40%)
Query: 22 AELFA---------VNNSKYPEIDRLL----------YYGKKDDKAKAYNLTMELNNKQP 62
AEL V SK + D++L Y D A A L E +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 63 NDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGIC 122
+++ A KR + K S + + + A + I
Sbjct: 118 KTKELIKNYITARIMA---KRPFDKKSNSA--LFRAVG-EGNA-----------QLVAIF 160
Query: 123 VGANGQ------FQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFF 176
GQ F+ L++ LY Y +
Sbjct: 161 ---GGQGNTDDYFEELRD------------------------LYQ---TYHVLVG--DLI 188
Query: 177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLD 236
+ L EL ++ I ++WL+
Sbjct: 189 KFSAETL--------------------SELIRTTLDAEKVFTQGLNI--------LEWLE 220
Query: 237 KAKAIPVVSY 246
P Y
Sbjct: 221 NPSNTPDKDY 230
Score = 27.7 bits (61), Expect = 4.4
Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 45/117 (38%)
Query: 143 RDQMNKAIQMAPKDF-------TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAED 195
++Q NK + + F T L G++ L + VS L EP+
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKF------LGY---------VSSLVEPSKVG 78
Query: 196 AIANCLKA----------------------EELAPAPWKENQLLIAKCYIEAGEYAK 230
L + + + LI K YI A AK
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAK 134
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 44.4 bits (104), Expect = 2e-05
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 45/178 (25%)
Query: 61 QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYG 120
P D L LA + E EA + +KA+E+ P +
Sbjct: 5 CPTHADSLNNLANI---KREQGNIE---EA--------VRLYRKALEVFPEFAAAHSNLA 50
Query: 121 ICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKI 180
+ G+ Q E + +AI+++P YS G E+ +
Sbjct: 51 SVLQQQGKLQ---EALMH-------YKEAIRISPTFADAYSNMGNTLKEMQDV------- 93
Query: 181 AVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
+ A+ +A ++ PA + +A + ++G +A+ A
Sbjct: 94 -------------QGALQCYTRAIQINPAFA-DAHSNLASIHKDSGNIPEAIASYRTA 137
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 43.7 bits (103), Expect = 3e-05
Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 49/224 (21%)
Query: 37 RLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
L +D+ + + N D+L A +
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF------IDV------ 324
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
+ K +E+ P N + + + +G+ L N + P+
Sbjct: 325 --LAITTKILEIDPYNLDVYPLHLASLHESGEKNKL---YLIS-------NDLVDRHPEK 372
Query: 157 FTLYSLKGRYQYEISKL----SFFERKIAV------------LIVSDLDEPTAEDAIANC 200
+ G Y ++K+ +F + + + E + AI+
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH--DQAISAY 430
Query: 201 LKAEELAP---APWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
A L P+ L + +++ G A ++L + A+
Sbjct: 431 TTAARLFQGTHLPY----LFLGMQHMQLGNILLANEYLQSSYAL 470
Score = 37.9 bits (88), Expect = 0.003
Identities = 27/244 (11%), Positives = 61/244 (25%), Gaps = 61/244 (25%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEK-------- 93
G+K+ N ++ + P + + + + K
Sbjct: 353 GEKNKLYLISNDLVDRH---PEKAVTWLAVGI---YYLCVNKISEARRYFSKSSTMDPQF 406
Query: 94 ---YILQGIEYAK------------KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC 138
+I +A A L + G+ G +
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL---LANEY 463
Query: 139 GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISK----LSFFERKIAVLIVSDLDEPTA- 193
+ + + D L + G + S ++ F+ + ++ + +E
Sbjct: 464 -------LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516
Query: 194 ----------------EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDK 237
+ AI + L+ IA Y+ A+ L +
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHE 575
Query: 238 AKAI 241
+ AI
Sbjct: 576 SLAI 579
Score = 31.7 bits (72), Expect = 0.22
Identities = 12/140 (8%), Positives = 40/140 (28%), Gaps = 17/140 (12%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
+K +++ N ++ W G + K + + +
Sbjct: 104 AFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKE-----------DLYNRSSA 151
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
L ++ ++ + +L ++ ++A ++ + L
Sbjct: 152 CRYLAAFCLVKLYD---WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS--MCYLR 206
Query: 219 AKCYIEAGEYAKAVQWLDKA 238
+ Y + +A + +A
Sbjct: 207 GQVYTNLSNFDRAKECYKEA 226
Score = 28.3 bits (63), Expect = 3.2
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242
+ A K ++ P + +A+ Y G+YA+A L K
Sbjct: 101 KCAAFVGEKVLDITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLYN 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 7e-05
Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 64/256 (25%)
Query: 1 MYSKLF-----------VLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKAK 49
M+ +L +LSL F ++ + KY L+ +K K
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKY----SLV---EKQPKES 424
Query: 50 AY---NLTMELNNKQPNDPDV------LYRLAKACHCLYDIKRRENDKEASEKYILQGIE 100
++ +EL K N+ + Y + K D+ D +Y I
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLD-----QYFYSHIG 478
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
+ K +E + + + + +F L++KI+ D + + TL
Sbjct: 479 HHLKNIEHPERMTLFRMVF-----LDFRF--LEQKIR-----HDSTAWNASGSILN-TLQ 525
Query: 161 SLKGRYQYEISKLS-FFERKIAVLIVSDLDE--PTAEDAIANCLKAEELAPAPWKENQLL 217
LK Y+ I +ER +V+ + + P E+ + + L A E++ +
Sbjct: 526 QLK-FYKPYICDNDPKYER-----LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 218 IAKCYIEAGEYAKAVQ 233
+ EA K VQ
Sbjct: 580 ----FEEA---HKQVQ 588
Score = 40.2 bits (93), Expect = 5e-04
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 22/132 (16%)
Query: 141 VFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFER--KI--AVLIV--SDLDEPTAE 194
V D++ I+ + + + +LS F I +L + D+ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 195 DAIANCLKAEELAPAPWKENQLLIAKCYIE-----AGEYAKAVQWLDKAKAIPVVSYESH 249
+ N L L KE+ + I Y+E EYA +D +++S
Sbjct: 406 V-VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSD 462
Query: 250 DLSTT----YSY 257
DL Y Y
Sbjct: 463 DLIPPYLDQYFY 474
Score = 35.2 bits (80), Expect = 0.018
Identities = 46/255 (18%), Positives = 76/255 (29%), Gaps = 69/255 (27%)
Query: 7 VLSLFQFAFVQFGEC-------------AELFAVNNSKYPE------IDRLLYYGKK--- 44
+LS+F+ AFV +C E+ + SK LL ++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 45 ----DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKY---ILQ 97
+ Y M + P ++ R+ R ND + KY LQ
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-----DRLYNDNQVFAKYNVSRLQ 135
Query: 98 GIEYAKKA-MELAPNNSNTQKWYGICV-GANGQFQSLKEKIKCG------VVFRDQMNKA 149
++A +EL P + + G G G V
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLG----------SGKTWVALDVCLS---YK 175
Query: 150 IQMAPKDFTLYSLK-GRYQYE---ISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE- 204
+Q DF ++ L + L +I S D + + ++AE
Sbjct: 176 VQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 205 -ELAPAPWKENQLLI 218
L + EN LL+
Sbjct: 235 RRLLKSKPYENCLLV 249
Score = 34.8 bits (79), Expect = 0.026
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 25/119 (21%)
Query: 156 DFTLYSLKGRYQYEISK-LSFFERKIAVLIVSDLDEPTAEDAIANCLKAEE---LAPAPW 211
DF G +QY+ LS FE V + D +D + L EE + +
Sbjct: 8 DFET----GEHQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 212 KENQL-LIAKCYIEAGE--YAKAVQ--------WLDKAKAIPVVSYESHDLSTTYSYKR 259
+ + + E K V+ +L I + ++ Y +R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQR 116
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 41.5 bits (98), Expect = 1e-04
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 52/191 (27%)
Query: 52 NLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPN 111
+ E + + DV+ LA+ + D K + ME P
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDF------KMC--------YKLTSVVMEKDPF 54
Query: 112 NSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEIS 171
+++ + + + L +K + + P + + G Y +
Sbjct: 55 HASCLPVHIGTLVELNKANELFY----------LSHKLVDLYPSNPVSWFAVGCYYLMVG 104
Query: 172 KLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL----APAPWKENQLLIAKCYIEAGE 227
+ E A KA L PA W + + E
Sbjct: 105 HKN-------------------EHARRYLSKATTLEKTYGPA-W----IAYGHSFAVESE 140
Query: 228 YAKAVQWLDKA 238
+ +A+ A
Sbjct: 141 HDQAMAAYFTA 151
Score = 33.0 bits (76), Expect = 0.075
Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 56/209 (26%)
Query: 42 GKKDDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIE 100
G K++ A + + L H + Q +
Sbjct: 104 GHKNEHARRYLSKATTLE---KTYGPAWIAYG---HSFAVESEHD-----------QAMA 146
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
A +L + G+ G K + ++A+ +AP+D +
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNS---KLAERF-------FSQALSIAPEDPFVM 196
Query: 161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA--------PWK 212
G ++ + + A L A E A W+
Sbjct: 197 HEVGVVAFQNGEW--------------------KTAEKWFLDALEKIKAIGNEVTVDKWE 236
Query: 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ + +YA+A+ + +A +
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVL 265
Score = 29.2 bits (66), Expect = 1.3
Identities = 22/201 (10%), Positives = 53/201 (26%), Gaps = 43/201 (21%)
Query: 38 LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
+ ++ + + P DP V++ + + + A + + L
Sbjct: 169 YGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVV---AFQNGEWK---TAEKWF-LD 218
Query: 98 GIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK 155
+E K + G ++ E + +A+ + P+
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA---EALDY-------HRQALVLIPQ 268
Query: 156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ 215
+ + YS G + E+A+ A L +
Sbjct: 269 NASTYSAIGYIHSLMGNF--------------------ENAVDYFHTALGLRRD-DTFSV 307
Query: 216 LLIAKCYIEAGEYAKAVQWLD 236
++ C ++A D
Sbjct: 308 TMLGHCIEMYIGDSEAYIGAD 328
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 40.9 bits (95), Expect = 2e-04
Identities = 21/186 (11%), Positives = 47/186 (25%), Gaps = 31/186 (16%)
Query: 56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT 115
L P+ +L +A L + ++ E + ++ +P +
Sbjct: 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNR---------ASELLGEIVQSSPEFTYA 235
Query: 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175
+ + L EK + + +Y +K K
Sbjct: 236 RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT-- 293
Query: 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWL 235
+++ +L + N +L+ K Y G +A
Sbjct: 294 ------------------DESYQAINTGIDLEMSWL--NYVLLGKVYEMKGMNREAADAY 333
Query: 236 DKAKAI 241
A +
Sbjct: 334 LTAFNL 339
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 40.1 bits (94), Expect = 5e-04
Identities = 25/211 (11%), Positives = 60/211 (28%), Gaps = 46/211 (21%)
Query: 38 LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
+ G+ +L ++ + Y+++ Y + E
Sbjct: 187 FIKEGEPRKAISDLKAASKLK---NDNTEAFYKIST---LYYQLGDHE-----------L 229
Query: 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD---QMNKAIQMAP 154
+ ++ ++L ++ Y N +S +E I+ G + D + ++ P
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEP 288
Query: 155 KD----FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAP 210
+ K +AI C + ++ P
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKP--------------------VEAIRVCSEVLQMEPDN 328
Query: 211 WKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
A+ Y+ Y +A+Q + A+
Sbjct: 329 VN-ALKDRAEAYLIEEMYDEAIQDYETAQEH 358
Score = 37.0 bits (86), Expect = 0.004
Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 43/227 (18%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG-IE 100
GK D+ + ++ N P++ + ++ + R A I
Sbjct: 108 GKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
+ K +E+ ++ ++ C G+ + + I + A ++ + +
Sbjct: 165 FLDKILEVCVWDAELRELRAECFIKEGEPR---KAISD-------LKAASKLKNDNTEAF 214
Query: 161 SLKGRYQYEI-------------------SKLSFFERKIAVLIVSDLDEPTA-------E 194
Y++ K F K + ++
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274
Query: 195 DAIANCLKAEELAPAPWKENQLL---IAKCYIEAGEYAKAVQWLDKA 238
DA + + P+ + I C+ + + +A++ +
Sbjct: 275 DATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Score = 35.8 bits (83), Expect = 0.010
Identities = 18/199 (9%), Positives = 55/199 (27%), Gaps = 51/199 (25%)
Query: 49 KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108
++L + + + EA + + KK ++
Sbjct: 81 PDLTKVIQLK---MDFTAARLQRGHLLLKQGKL------DEAEDDF--------KKVLKS 123
Query: 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ---------MNKAIQMAPKDFTL 159
P+ + ++ + + ++ + ++K +++ D L
Sbjct: 124 NPSENEEKEAQSQLI----KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179
Query: 160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIA 219
L+ + + AI++ A +L E I+
Sbjct: 180 RELRAECFIKEGEP--------------------RKAISDLKAASKLKND-NTEAFYKIS 218
Query: 220 KCYIEAGEYAKAVQWLDKA 238
Y + G++ ++ + +
Sbjct: 219 TLYYQLGDHELSLSEVREC 237
Score = 28.9 bits (65), Expect = 1.9
Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 28/158 (17%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRL-AKACHCLYDIKRRENDKEASEKYILQGIE 100
G+ D Y M+ P+ + R + CHC ++ + I
Sbjct: 271 GRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPV-----------EAIR 316
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
+ +++ P+N N K + E I+ A + D +
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYD---EAIQD-------YETAQEHNENDQQIR 366
Query: 161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198
+ Q L +++ I+ ++ I
Sbjct: 367 EGLEKAQRL---LKQSQKRDYYKILGVKRNAKKQEIIK 401
Score = 28.5 bits (64), Expect = 2.5
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
+ A+ P ++ Y + + K + A+ + K +L
Sbjct: 50 HAAVDGDPDNYIAYYRRATVFLAMGKS--------------------KAALPDLTKVIQL 89
Query: 207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ +L ++ G+ +A K
Sbjct: 90 KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 39.2 bits (92), Expect = 7e-04
Identities = 21/217 (9%), Positives = 54/217 (24%), Gaps = 58/217 (26%)
Query: 38 LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
+ G+ +L ++ + Y+++ Y + E
Sbjct: 164 FIKEGEPRKAISDLKAASKLK---SDNTEAFYKIST---LYYQLGDHE-----------L 206
Query: 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQ---------MNK 148
+ ++ ++L ++ Y + L + I+
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQV-------KKLNKLIESAEELIRDGRYTDATSKYES 259
Query: 149 AIQMAPKD----FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204
++ P + K +AI C +
Sbjct: 260 VMKTEPSVAEYTVRSKERICHCFSKDEKP--------------------VEAIRICSEVL 299
Query: 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
++ P A+ Y+ Y +A+Q + A+
Sbjct: 300 QMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335
Score = 36.1 bits (84), Expect = 0.008
Identities = 21/195 (10%), Positives = 55/195 (28%), Gaps = 43/195 (22%)
Query: 49 KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108
+ L + + L + + EA + KK ++
Sbjct: 58 PDLTKVIALK---MDFTAARLQRGH---LLLKQGKLD---EA--------EDDFKKVLKS 100
Query: 109 APNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFR-----DQMNKAIQMAPKDFTLYSLK 163
P+ ++ V A+ + + + ++K +++ D L L+
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160
Query: 164 GRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYI 223
+ + AI++ A +L E I+ Y
Sbjct: 161 AECFIKEGEP--------------------RKAISDLKAASKLKSD-NTEAFYKISTLYY 199
Query: 224 EAGEYAKAVQWLDKA 238
+ G++ ++ + +
Sbjct: 200 QLGDHELSLSEVREC 214
Score = 32.2 bits (74), Expect = 0.13
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 34/166 (20%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQ----SLKEKIKC-----------GVVFR 143
+ A++ P+N A G+ + L + I G +
Sbjct: 23 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82
Query: 144 DQ---------MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194
Q K ++ P + + + + + +D
Sbjct: 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA---- 138
Query: 195 DAIANCLKAEELAP--APWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
AI K E+ A +E + A+C+I+ GE KA+ L A
Sbjct: 139 -AITFLDKILEVCVWDAELRELR---AECFIKEGEPRKAISDLKAA 180
Score = 28.8 bits (65), Expect = 1.8
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 25/129 (19%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRL-AKACHCLYDIKRRENDKEASEKYILQGIE 100
G+ D Y M+ P+ + R + CHC ++ EA I
Sbjct: 248 GRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPV---EA--------IR 293
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
+ +++ P+N N K + E I+ A + D +
Sbjct: 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYD---EAIQD-------YEAAQEHNENDQQIR 343
Query: 161 SLKGRYQYE 169
+ Q
Sbjct: 344 EGLEKAQRL 352
Score = 26.9 bits (60), Expect = 6.9
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 21/95 (22%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
+ A+ P ++ Y + + K + A+ + K L
Sbjct: 27 HAAVDGDPDNYIAYYRRATVFLAMGKS--------------------KAALPDLTKVIAL 66
Query: 207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ +L ++ G+ +A K
Sbjct: 67 KMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/203 (12%), Positives = 56/203 (27%), Gaps = 38/203 (18%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
+ + + LN P + +LA LY + E+ +
Sbjct: 324 QDYKNAKEDFQKAQSLN---PENVYPYIQLACL---LYKQGKFT---ES--------EAF 366
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+ P ++ + G F IK + A ++ ++
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFD---TAIKQ-------YDIAKRLEEVQEKIHV 416
Query: 162 LKGR-YQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP--APWKENQLLI 218
G + L + AI KA EL P K +
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNA-----AIKLLTKACELDPRSEQAKIG---L 468
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
A+ ++ + +A++ + + +
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAIL 491
Score = 34.3 bits (79), Expect = 0.032
Identities = 20/208 (9%), Positives = 51/208 (24%), Gaps = 22/208 (10%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACH-------CLYDIKRRENDKEASEKY 94
G + + +E+ P+ L R A A ++D+ + +
Sbjct: 73 GDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129
Query: 95 ILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAP 154
I +E + N N K G SL + ++++
Sbjct: 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI-------FDSHLEVSS 182
Query: 155 KDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTA----EDAIANCLKAEELAPAP 210
+ + + + +V++ + ++ + L
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 211 WKENQLLIAKCYIEAGEYAKAVQWLDKA 238
+ A L ++
Sbjct: 243 -ALALCYTGIFHFLKNNLLDAQVLLQES 269
Score = 32.4 bits (74), Expect = 0.14
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 46/198 (23%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
GK + +N T P P+V A+ L D + A I+
Sbjct: 358 GKFTESEAFFNETKLKF---PTLPEVPTFFAEI---LTDRGDFD---TA--------IKQ 400
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD------QMNKAIQMAPK 155
A L G +G + + + KA ++ P+
Sbjct: 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460
Query: 156 DFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQ 215
+ + ++ K+ ++AI + LA ++
Sbjct: 461 SEQAKIGLAQLKLQMEKI--------------------DEAIELFEDSAILAR---TMDE 497
Query: 216 LLIAKCYIEAGEYAKAVQ 233
L A + EA + K ++
Sbjct: 498 KLQATTFAEAAKIQKRLR 515
Score = 30.1 bits (68), Expect = 0.71
Identities = 20/214 (9%), Positives = 47/214 (21%), Gaps = 31/214 (14%)
Query: 26 AVNNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDI-KRR 84
N + + +K L L+ + VL
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 85 ENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRD 144
E + A++ + T + Y + + + +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSA--TDEGYLVANDLLTKSTDMYHSLL------S 230
Query: 145 QMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAE 204
+ G + + + L DA ++
Sbjct: 231 ANTVDDPLRENAALALCYTGIFHFLKNNL--------------------LDAQVLLQESI 270
Query: 205 ELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
L P P + + +A + + ++ KA
Sbjct: 271 NLHPTP--NSYIFLALTLADKENSQEFFKFFQKA 302
Score = 28.9 bits (65), Expect = 1.9
Identities = 25/150 (16%), Positives = 36/150 (24%), Gaps = 35/150 (23%)
Query: 97 QGIEYAKKAMELAPNNSNT--QKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM 152
G + L+P+ + G F E IK AI++
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFN---EAIKY-------YQYAIEL 54
Query: 153 APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWK 212
P + YS L E I KA E+ P
Sbjct: 55 DPNEPVFYSNISACYISTGDL--------------------EKVIEFTTKALEIKPD-HS 93
Query: 213 ENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242
+ L A G + A+ L
Sbjct: 94 KALLRRASANESLGNFTDAMFDLSVLSLNG 123
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 38.3 bits (90), Expect = 0.001
Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 31/143 (21%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
+ + P+N+ + AI+ P
Sbjct: 19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD---RSAHF-------STLAIKQNPLLAE 68
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
YS G E +L ++AI + A L P + + + +
Sbjct: 69 AYSNLGNVYKERGQL--------------------QEAIEHYRHALRLKPD-FIDGYINL 107
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
A + AG+ AVQ A
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQY 130
Score = 36.4 bits (85), Expect = 0.007
Identities = 24/200 (12%), Positives = 46/200 (23%), Gaps = 48/200 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G + + P++ VL L+ + +
Sbjct: 13 GDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQC------RRLDRS--------AHF 55
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+ A++ P + G GQ Q E I+ A+++ P Y
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQ---EAIEH-------YRHALRLKPDFIDGYI 105
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
+ E A+ + A + P + +
Sbjct: 106 NLAAALVAAGDM--------------------EGAVQAYVSALQYNPD-LYCVRSDLGNL 144
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
G +A KA
Sbjct: 145 LKALGRLEEAKACYLKAIET 164
Score = 36.0 bits (84), Expect = 0.010
Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 48/200 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
D AY + L+ PN V LA Y+ + A I+
Sbjct: 217 RIFDRAVAAYLRALSLS---PNHAVVHGNLACV---YYEQGLID---LA--------IDT 259
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
++A+EL P+ + + G E C N A+++ P +
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVA---EAEDC-------YNTALRLCPTHADSLN 309
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
+ E + E+A+ KA E+ P + +A
Sbjct: 310 NLANIKREQGNI--------------------EEAVRLYRKALEVFPE-FAAAHSNLASV 348
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
+ G+ +A+ +A I
Sbjct: 349 LQQQGKLQEALMHYKEAIRI 368
Score = 33.3 bits (77), Expect = 0.064
Identities = 39/200 (19%), Positives = 58/200 (29%), Gaps = 48/200 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G + +AY ++ N P+ V L L + R E EA
Sbjct: 115 GDMEGAVQAYVSALQYN---PDLYCVRSDLGNL---LKALGRLE---EA--------KAC 157
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
KA+E PN + G A G+ I KA+ + P Y
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIW---LAIHH-------FEKAVTLDPNFLDAYI 207
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
G E + A+A L+A L+P +A
Sbjct: 208 NLGNVLKEARIF--------------------DRAVAAYLRALSLSPN-HAVVHGNLACV 246
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
Y E G A+ +A +
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL 266
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 38.2 bits (89), Expect = 0.002
Identities = 25/197 (12%), Positives = 62/197 (31%), Gaps = 39/197 (19%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
D K ++ EL+ P + +LA Y + + +
Sbjct: 318 QNYDQAGKDFDKAKELD---PENIFPYIQLACL---AYRENKFD---DC--------ETL 360
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+A P ++ + F + +K + AI++ K +Y
Sbjct: 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFD---KALKQ-------YDLAIELENKLDGIYV 410
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
+ + L+ + E A KA +L P ++ ++ +A+
Sbjct: 411 GIAPLVGKATLLTRNPTV------ENFIE-----ATNLLEKASKLDPR-SEQAKIGLAQM 458
Query: 222 YIEAGEYAKAVQWLDKA 238
++ + +A+ +++
Sbjct: 459 KLQQEDIDEAITLFEES 475
Score = 32.0 bits (73), Expect = 0.16
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 41/200 (20%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
K DD ++ P P+V A+ L D + +A ++Y
Sbjct: 352 NKFDDCETLFSEAKRKF---PEAPEVPNFFAEI---LTDKNDFD---KALKQY------- 395
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
A+EL VG + KA ++ P+
Sbjct: 396 -DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL-LEKASKLDPRSEQAKI 453
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
+ + + + ++AI ++ +LA + L A
Sbjct: 454 GLAQMKLQQEDI--------------------DEAITLFEESADLAR---TMEEKLQAIT 490
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
+ EA + + ++
Sbjct: 491 FAEAAKVQQRIRSDPVLAKK 510
Score = 31.3 bits (71), Expect = 0.32
Identities = 28/210 (13%), Positives = 57/210 (27%), Gaps = 36/210 (17%)
Query: 33 PEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASE 92
P + + + + E N + L L K YD K E+ +A+
Sbjct: 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD-KADESFTKAAR 217
Query: 93 KYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQM 152
+ + ++ + +L + + + GI + + KAI++
Sbjct: 218 LF-EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL---GAHED-------IKKAIEL 266
Query: 153 APKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP-APW 211
P Y + + + KA +L
Sbjct: 267 FP-RVNSYIYMALIMADRNDS--------------------TEYYNYFDKALKLDSNNSS 305
Query: 212 KENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ Y +A + DKAK +
Sbjct: 306 VYYHR--GQMNFILQNYDQAGKDFDKAKEL 333
Score = 30.9 bits (70), Expect = 0.40
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 31/143 (21%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
Y KA++L NNS+ G + + K +KA ++ P++
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYD---QAGKD-------FDKAKELDPENIF 339
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
Y Y +K +D +A+ P E
Sbjct: 340 PYIQLACLAYRENKF--------------------DDCETLFSEAKRKFPE-APEVPNFF 378
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
A+ + ++ KA++ D A +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIEL 401
Score = 28.9 bits (65), Expect = 1.6
Identities = 24/215 (11%), Positives = 51/215 (23%), Gaps = 29/215 (13%)
Query: 28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRREND 87
+ S P ++R L + + + K
Sbjct: 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166
Query: 88 KEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ----SLKEKIKCGVVFR 143
K L ++ E N + + + S + +
Sbjct: 167 FFGIFKPELT-FANYDESNEADKELMN--GLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203
D+ N+ ++ K G +++ + A + KA
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDP--------------------LGAHEDIKKA 263
Query: 204 EELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
EL P + A + + + + DKA
Sbjct: 264 IELFPRVNSYIYM--ALIMADRNDSTEYYNYFDKA 296
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 37.3 bits (87), Expect = 0.003
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 46/208 (22%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G D +A++ +EL+ P A LY R + A +
Sbjct: 91 GNFDAAYEAFDSVLELD---PTYNYAHLNRGIA---LYYGGRDK---LA--------QDD 133
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+ PN+ W + + Q+ + + + + + K+ ++
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV-----------LKQHFEKSDKEQWGWN 182
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
+ Y IS+ + E A+ LA E + K
Sbjct: 183 IVEFYLGNISEQTLM-----------------ERLKADATDNTSLAEH-LSETNFYLGKY 224
Query: 222 YIEAGEYAKAVQWLDKAKAIPVVSYESH 249
Y+ G+ A A A V ++ H
Sbjct: 225 YLSLGDLDSATALFKLAVANNVHNFVEH 252
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 37.3 bits (87), Expect = 0.003
Identities = 22/212 (10%), Positives = 52/212 (24%), Gaps = 52/212 (24%)
Query: 38 LLYYGKKDDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYIL 96
+L +D A + Y ++ + D+ ++ Y+ A
Sbjct: 83 ILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSY---FYNKGNFP---LA------ 127
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
I+Y +K + + G N ++ + K +++ P
Sbjct: 128 --IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV---KADSS-------FVKVLELKPNI 175
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
+ Y + R + A K E+ + +
Sbjct: 176 YIGYLWRARANAAQDPDTKQG-----------------LAKPYYEKLIEVCAPGGAKYKD 218
Query: 217 LIAKCY-------IEAGEYAKAVQWLDKAKAI 241
+ + + KA A+
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Score = 33.4 bits (77), Expect = 0.050
Identities = 15/146 (10%), Positives = 36/146 (24%), Gaps = 34/146 (23%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
IE K N+ +C ++ ++ I+ +
Sbjct: 23 IEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-------YFSKVNATKAKSA 75
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP---APWKENQ 215
+ G+ + + AI A + + +
Sbjct: 76 DFEYYGKILMKKGQD--------------------SLAIQQYQAAVDRDTTRLDMYGQ-- 113
Query: 216 LLIAKCYIEAGEYAKAVQWLDKAKAI 241
I + G + A+Q+++K
Sbjct: 114 --IGSYFYNKGNFPLAIQYMEKQIRP 137
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 35.9 bits (83), Expect = 0.006
Identities = 27/193 (13%), Positives = 52/193 (26%), Gaps = 45/193 (23%)
Query: 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105
D+ + Y T ++ + LA A + N +A + K+
Sbjct: 36 DRTEMYYWT-NVDKNSEISSKLATELALAYK------KNRNYDKA--------YLFYKEL 80
Query: 106 MELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR 165
++ APNN + + GQ K+ ++ K +Q+ + G
Sbjct: 81 LQKAPNNVDCLEACAEMQVCRGQE---KDALRM-------YEKILQLEADNLAANIFLGN 130
Query: 166 YQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA 225
Y Y ++ + + K + +
Sbjct: 131 YYYLTAEQE-------------------KKKLETDYKKLSSPTKMQ-YARYRDGLSKLFT 170
Query: 226 GEYAKAVQWLDKA 238
Y KA L K
Sbjct: 171 TRYEKARNSLQKV 183
Score = 33.2 bits (76), Expect = 0.053
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 26/128 (20%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G++ D + Y ++L ++ L + E +K+ +E
Sbjct: 102 GQEKDALRMYEKILQLE---ADNLAANIFLGNYYY-----LTAEQEKKK--------LET 145
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
K + + G+ +++ + + K I P +
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYE---KARNS-------LQKVILRFPSTEAQKT 195
Query: 162 LKGRYQYE 169
L + E
Sbjct: 196 LDKILRIE 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 34.4 bits (78), Expect = 0.013
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 34 EIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEK 93
E DR+L + + + T + N P D D L R L +++
Sbjct: 11 EFDRILLF---EQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFH----SISDAKQ 60
Query: 94 YILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIK 137
I + I ++A+ + P G + + + K
Sbjct: 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 104
Score = 28.6 bits (63), Expect = 1.3
Identities = 11/68 (16%), Positives = 26/68 (38%)
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
Q + A+ + P +++ +G + QF S+ + + + +A+ + PK
Sbjct: 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79
Query: 157 FTLYSLKG 164
G
Sbjct: 80 DEAVWCIG 87
Score = 27.4 bits (60), Expect = 3.3
Identities = 7/73 (9%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 45 DDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKK 104
+ + + ++ P + ++ + A D+ ++ ++ ++
Sbjct: 63 QEAITKFEEALLID---PKKDEAVWCIGNA---YTSFAFLTPDETEAKHNFDLATQFFQQ 116
Query: 105 AMELAPNNSNTQK 117
A++ P+N++ K
Sbjct: 117 AVDEQPDNTHYLK 129
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 34.6 bits (79), Expect = 0.024
Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 37/211 (17%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G ++ + N L L+ L + + + ++++ +
Sbjct: 151 GDVTSAHTCFSGALTHC---KNK-VSLQNLSMVLRQL-----QTDSGDEHSRHVMDSVRQ 201
Query: 102 AKKAMELAPNNSNTQKWY--GIC--VGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF 157
AK A+++ + + WY G Q+ K + + Q K + A +
Sbjct: 202 AKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAY-AQAEKVDRKASSNP 258
Query: 158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL 217
L+ + +A+ +A L PA W E Q
Sbjct: 259 DLHLNRATLHKYEESY--------------------GEALEGFSQAAALDPA-WPEPQQR 297
Query: 218 IAKCYIEAGEYAKAVQWLDKAKAIPVVSYES 248
+ ++ K K + S
Sbjct: 298 EQQLLEFLSRLTSLLESKGKTKPKKLQSMLG 328
Score = 31.1 bits (70), Expect = 0.38
Identities = 18/193 (9%), Positives = 54/193 (27%), Gaps = 39/193 (20%)
Query: 56 ELNNKQPNDPDVLYRLAKACHCLYDIKRR----ENDKEASEKYI-LQG-----IEYAKKA 105
+ +++ VL +L LY + + ++A K +Q ++ ++
Sbjct: 35 MMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEV 94
Query: 106 MELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGR 165
+ A + G + + E ++KA+++ P+ ++ G
Sbjct: 95 LGSAQVEAQALMLKGKALNVTPDY--SPEAEVL-------LSKAVKLEPELVEAWNQLGE 145
Query: 166 YQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEA 225
++ + A A L + ++
Sbjct: 146 VYWKKGDV--------------------TSAHTCFSGALTHCKNKVSLQNLSMVLRQLQT 185
Query: 226 GEYAKAVQWLDKA 238
+ + + +
Sbjct: 186 DSGDEHSRHVMDS 198
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 34.6 bits (80), Expect = 0.024
Identities = 29/222 (13%), Positives = 53/222 (23%), Gaps = 49/222 (22%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G Y E NN + + + N EA
Sbjct: 1 GHMLQNNTDYPF--EANNP-YMYHENPMEEGLSML------KLANLAEA--------ALA 43
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQ----SLKEKIKC-----------GVVFRDQ- 145
+ + AP + G+ N + +L V ++
Sbjct: 44 FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103
Query: 146 --------MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAI 197
+ + P+ L S+ + +I L+ ++ E
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE-----CR 158
Query: 198 ANCLKAEELAPA-PWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
A E+ P L + Y + Y A L +A
Sbjct: 159 TLLHAALEMNPNDAQLHASLGVL--YNLSNNYDSAAANLRRA 198
Score = 28.8 bits (65), Expect = 1.8
Identities = 24/202 (11%), Positives = 62/202 (30%), Gaps = 38/202 (18%)
Query: 43 KKDDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG-IE 100
+ A + + P + +A + D+ + D + +
Sbjct: 103 HNANAALASLRAWLLSQ---PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159
Query: 101 YAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLY 160
A+E+ PN++ G+ + + R +A+++ P D L+
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYD---SAAAN---LR----RAVELRPDDAQLW 209
Query: 161 SLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLLIA 219
+ G ++ ++A+ +A ++ P + ++
Sbjct: 210 NKLGATLANGNRP--------------------QEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 220 KCYIEAGEYAKAVQWLDKAKAI 241
Y +Y A + L +A +
Sbjct: 250 --YSNMSQYDLAAKQLVRAIYM 269
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 32.9 bits (75), Expect = 0.11
Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 27/146 (18%)
Query: 38 LLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
L G A + L+ P P+ + RL + +
Sbjct: 33 ELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHA--------------E 75
Query: 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF 157
++A + AP + W G + GQ + +A Q+ P++
Sbjct: 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAE---AAAAA-------YTRAHQLLPEEP 125
Query: 158 TLYSLKGRYQYEISKLSFFERKIAVL 183
+ + ++ + + A +
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSAQV 151
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 30.7 bits (70), Expect = 0.11
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 24/105 (22%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119
+ P DP Y LA+ + +N A + ++ +E P+ T
Sbjct: 2 EDPEDPFTRYALAQEH------LKHDNASRA--------LALFEELVETDPDYVGTYYHL 47
Query: 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKG 164
G + + I + I++A ++ T L
Sbjct: 48 GKLYERLDRTD---DAIDT-------YAQGIEVAREEGTQKDLSE 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 32.3 bits (74), Expect = 0.13
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 30/168 (17%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQ----SLKEKIKC-----------GVVFR 143
+ + A++ P + ++ G N Q +L+ ++ V F
Sbjct: 84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143
Query: 144 DQ---------MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194
++ + ++ P L + ++L S E
Sbjct: 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE---- 199
Query: 195 DAIANCLKAEELAPAPWK-ENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
L A L P + Q + + +GEY KAV A ++
Sbjct: 200 -VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Score = 26.9 bits (60), Expect = 6.7
Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 39/204 (19%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG-IE 100
+ + + P ++ + + + E
Sbjct: 146 SLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202
Query: 101 YAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
A+ L P + + G+ +G++ + + C A+ + P D+
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD---KAVDC-------FTAALSVRPNDYL 252
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLL 217
L++ G ++ E+A+A +A EL P L
Sbjct: 253 LWNKLGATLANGNQS--------------------EEAVAAYRRALELQPGYIRSRYNLG 292
Query: 218 IAKCYIEAGEYAKAVQWLDKAKAI 241
I+ I G + +AV+ +A +
Sbjct: 293 IS--CINLGAHREAVEHFLEALNM 314
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 32.3 bits (74), Expect = 0.14
Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 52/236 (22%)
Query: 28 NNSKYPEIDRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRREND 87
+ E K Y N D + + +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYF--HTENP-FKDWPGAFEEGLKRL------KEGDL 81
Query: 88 KEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ----SLKEKIKC----- 138
I + + A+ P ++ ++ GI N Q +L+ ++
Sbjct: 82 PVT--------ILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133
Query: 139 ------GVVFRDQ---------MNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVL 183
V + + + I+ PK L K ++S
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS--------- 184
Query: 184 IVSDLDEPTAEDAIANCLKAEELAPAPWK-ENQLLIAKCYIEAGEYAKAVQWLDKA 238
S +D E L+A + Q + + +GE+ +A+ + A
Sbjct: 185 -KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Score = 31.2 bits (71), Expect = 0.30
Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 42/203 (20%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
+ D +A ++ N P ++ + +R S E
Sbjct: 147 SHQQDACEALKNWIKQN---PKYKYLVKNKKGS---PGLTRRMSKSPVDSSVLE-GVKEL 199
Query: 102 AKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTL 159
+A + + G+ +G+F I N A+ + P+D++L
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN---RAIDA-------FNAALTVRPEDYSL 249
Query: 160 YSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLLI 218
++ G + E+A+ +A E+ P L I
Sbjct: 250 WNRLGATLANGDRS--------------------EEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
+ I G Y +AV A ++
Sbjct: 290 S--CINLGAYREAVSNFLTALSL 310
Score = 30.0 bits (68), Expect = 0.71
Identities = 26/167 (15%), Positives = 41/167 (24%), Gaps = 35/167 (20%)
Query: 79 YDIKRRENDKEASEKYILQGIEYAKKAMELAPNN--SNTQKWY--GICVGANGQFQSLKE 134
++ RR E E + ++K N + + G+ G
Sbjct: 27 EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLP---V 83
Query: 135 KIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAE 194
I M AI P D + G Q E +
Sbjct: 84 TILF-------MEAAILQDPGDAEAWQFLGITQAENENE--------------------Q 116
Query: 195 DAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
AI + EL P + + +A Y A + L
Sbjct: 117 AAIVALQRCLELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQ 162
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 31.6 bits (72), Expect = 0.22
Identities = 14/154 (9%), Positives = 31/154 (20%), Gaps = 34/154 (22%)
Query: 88 KEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMN 147
EA + + L P + A Q L +
Sbjct: 50 VEAVHAW---RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL----------C 96
Query: 148 KAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207
+A + P+ + + + + + + +A L
Sbjct: 97 QAHGLTPQQVVAIASHDGGKQALETV--------------------QRLLPVLCQAHGLT 136
Query: 208 PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
P + L +A +
Sbjct: 137 PEQV-VAIASHDGGKQALETVQALLPVLCQAHGL 169
Score = 30.1 bits (68), Expect = 0.68
Identities = 17/200 (8%), Positives = 37/200 (18%), Gaps = 48/200 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
L P + L E +
Sbjct: 86 ETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQAL------ETVQRLLPVL------- 129
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+A L P + A Q + + +A + P+ +
Sbjct: 130 -CQAHGLTPEQVVAIASHDGGKQALETVQ---ALLPV-------LCQAHGLTPEQVVAIA 178
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
G + + + + + +A L P
Sbjct: 179 SNGGGKQALETV--------------------QRLLPVLCQAHGLTPQQVVAIASN-GGG 217
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
+ + L +A +
Sbjct: 218 KQALETVQRLLPVLCQAHGL 237
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/200 (7%), Positives = 37/200 (18%), Gaps = 48/200 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
L P + ++ + +
Sbjct: 222 ETVQRLLPVLCQAHGLT---PQQVVAIASNGGG---KQALETVQ---RL--------LPV 264
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+A L P A Q + + +A + P+ +
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQ---RLLPV-------LCQAHGLTPQQVVAIA 314
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLIAKC 221
G + + + + + +A L P
Sbjct: 315 SNGGGKQALETV--------------------QRLLPVLCQAHGLTPQ-QVVAIASHDGG 353
Query: 222 YIEAGEYAKAVQWLDKAKAI 241
+ + L +A +
Sbjct: 354 KQALETVQRLLPVLCQAHGL 373
Score = 28.9 bits (65), Expect = 1.7
Identities = 16/201 (7%), Positives = 37/201 (18%), Gaps = 50/201 (24%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
L P + + E +
Sbjct: 290 ETVQRLLPVLCQAHGLT---PQQVVAIASNGGG------KQALETVQRLLPVL------- 333
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+A L P + A Q + + +A + P+ +
Sbjct: 334 -CQAHGLTPQQVVAIASHDGGKQALETVQ---RLLPV-------LCQAHGLTPEQVVAIA 382
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQLLIAK 220
G + + + + + +A L P
Sbjct: 383 SNGGGKQALETV--------------------QRLLPVLCQAHGLTPEQVVAIASHDGG- 421
Query: 221 CYIEAGEYAKAVQWLDKAKAI 241
+ + L +A +
Sbjct: 422 -KQALETVQRLLPVLCQAHGL 441
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 30.7 bits (70), Expect = 0.33
Identities = 27/229 (11%), Positives = 56/229 (24%), Gaps = 44/229 (19%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQG 98
L + T + D +L E +A
Sbjct: 14 LVPRGSHMGDQNPLKTDKGR---DEARDAYIQLGLG---YLQRGNTE---QA-------- 56
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
+KA+E+ P++++ + + + + KA+ ++
Sbjct: 57 KVPLRKALEIDPSSADAHAALAVVFQTEMEPK---LADEE-------YRKALASDSRNAR 106
Query: 159 LYSLKGRYQYEISKL----SFFERKIAVLIVSDLDEP------------TAEDAIANCLK 202
+ + G + YE + + + A K
Sbjct: 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166
Query: 203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESHDL 251
+ L L +A + EY A Q+ D + S L
Sbjct: 167 SLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 29.7 bits (67), Expect = 0.33
Identities = 7/89 (7%), Positives = 24/89 (26%), Gaps = 14/89 (15%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G + Y + + + + L + +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGST---FRTLGEYR-----------KAEAV 49
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQ 130
++ PN+ + +Y + + G+++
Sbjct: 50 LANGVKQFPNHQALRVFYAMVLYNLGRYE 78
Score = 27.4 bits (61), Expect = 2.7
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLI--AKCYIEAGEYAKAVQWLDKAKAI 241
A+ KA + + + GEY KA L
Sbjct: 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 30.2 bits (68), Expect = 0.47
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 21/110 (19%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119
P + + L + Y + ++ + Y ++A++L N+
Sbjct: 39 ANPQNSEQWALLGEY----YLWQNDYSN--SLLAY--------RQALQLRGENAELYAAL 84
Query: 120 GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYE 169
+ + ++KA+ + + T L +
Sbjct: 85 ATVLYYQASQHMTAQTRAM-------IDKALALDSNEITALMLLASDAFM 127
Score = 28.7 bits (64), Expect = 1.5
Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 28/159 (17%)
Query: 83 RRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVF 142
R + AS++ ++ + + P NS G + +
Sbjct: 14 RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS---NSLLA---- 66
Query: 143 RDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLK 202
+A+Q+ ++ LY+ Y + + I L
Sbjct: 67 ---YRQALQLRGENAELYAALATVLYYQASQHMTAQ--------------TRAMIDKALA 109
Query: 203 AEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ +L+A YA+A++ K +
Sbjct: 110 LDSNEITAL----MLLASDAFMQANYAQAIELWQKVMDL 144
>3kez_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
1.90A {Bacteroides vulgatus atcc 8482}
Length = 461
Score = 30.5 bits (69), Expect = 0.63
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 21/83 (25%)
Query: 183 LIVSDLDEPTAEDAIANCLKAEELAPAPWKEN-------QLLIAKCYIEAGEYAKAVQWL 235
I+SDL + EL + + L+++ Y+ GEY +A+
Sbjct: 172 EIISDLKN------------STELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMA 219
Query: 236 DKAKAIPVVSYESHDLSTTYSYK 258
+ AI E + L T Y
Sbjct: 220 E--NAIKGAEKEGYALWTNEEYP 240
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.6 bits (69), Expect = 0.64
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKA 240
+ A L A+ + + E L+ + ++ G+ AKA + LD
Sbjct: 412 DSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.8 bits (65), Expect = 0.90
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 26/102 (25%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
+KA ++ P + T + + +E C KA E+
Sbjct: 28 DKAKELDPTNMTYITNQAAVYFEKGDY--------------------NKCRELCEKAIEV 67
Query: 207 APAPWKENQLL------IAKCYIEAGEYAKAVQWLDKAKAIP 242
++ + + I Y + +Y A+ + +K+ A
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 28.8 bits (65), Expect = 0.92
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 26/102 (25%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
+KAI++ P + T Y+ K +E K + + C KA E+
Sbjct: 32 DKAIELDPSNITFYNNKAAVYFEEKKF--------------------AECVQFCEKAVEV 71
Query: 207 APAPWKENQLL------IAKCYIEAGEYAKAVQWLDKAKAIP 242
+ +L+ + + + + AVQW ++ +
Sbjct: 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.1
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 185 VSDLDEPTAEDAIANCLKAEELAPAPWKENQ-LLIAKCYIEAGEYAKAVQWLDKAK 239
++ D T E ++ W+E Q + + ++A +W +KAK
Sbjct: 74 IAQADRLTQE---PESIRK-------WREEQRKRLQE--LDAASKVMEQEWREKAK 117
Score = 27.8 bits (61), Expect = 2.5
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 22/61 (36%)
Query: 83 RRENDK------EASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKI 136
R E K AS+ + E AKK +E +W + EK
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLE---------EWN-------QRQSEQVEKN 134
Query: 137 K 137
K
Sbjct: 135 K 135
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 29.0 bits (66), Expect = 1.1
Identities = 25/203 (12%), Positives = 55/203 (27%), Gaps = 54/203 (26%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G+ + + D DV L A + +E
Sbjct: 22 GRYSQAVMLLEQVYDAD---AFDVDVALHLGIA---YVKTGAVD---RGTELL------- 65
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
++++ AP+N G+ ++ + + K + P +F +
Sbjct: 66 -ERSLADAPDNVKVATVLGLTYVQVQKYD---LAVPL-------LIKVAEANPINFNVRF 114
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP---APWKENQLLI 218
G + + ++AI + A L P +
Sbjct: 115 RLGVALDNLGRF--------------------DEAIDSFKIALGLRPNEGKVH--RAIAF 152
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
+ Y + G + +A+ KA +
Sbjct: 153 S--YEQMGRHEEALPHFKKANEL 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 28.2 bits (64), Expect = 1.2
Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 30/121 (24%)
Query: 39 LYYGKKDDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
Y ++ + ++L+ P + KA LY+++R E EA + Y
Sbjct: 16 QYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKA---LYNLERYE---EAVDCY--- 63
Query: 98 GIEYAKKAMELAPNNSNTQKWY--GICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPK 155
+ + + N W + + + + ++
Sbjct: 64 -----NYVINVIEDEYNKDVWAAKADALRYIEGKE---VEAEI-------AEARAKLEHH 108
Query: 156 D 156
Sbjct: 109 H 109
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 28.1 bits (63), Expect = 1.2
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ A+ + A + P + + K G+ A A Q + A
Sbjct: 36 DAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82
Score = 26.1 bits (58), Expect = 5.9
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 60 KQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWY 119
+ ++ + + L K + ++ + A + + + A++ P S KW
Sbjct: 14 QGTDNMLLRFTLGKT---YAEHEQFD---AA--------LPHLRAALDFDPTYSVAWKWL 59
Query: 120 GICVGANGQFQ 130
G + G
Sbjct: 60 GKTLQGQGDRA 70
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 28.6 bits (64), Expect = 1.2
Identities = 16/153 (10%), Positives = 37/153 (24%), Gaps = 44/153 (28%)
Query: 56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT 115
L + + LY L Y + + +A + + L ++
Sbjct: 9 MLRGLSEDTLEQLYALG---FNQYQAGKWD---DA--------QKIFQALCMLDHYDARY 54
Query: 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175
G C + G ++ + ++ + M + ++ L
Sbjct: 55 FLGLGACRQSLGLYE---QALQS-------YSYGALMDINEPRFPFHAAECHLQLGDL-- 102
Query: 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208
+ A + A LA
Sbjct: 103 ------------------DGAESGFYSARALAA 117
Score = 28.6 bits (64), Expect = 1.3
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
E A+ + + A+C+++ G+ A A+A+
Sbjct: 69 EQALQSYSYGALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Score = 27.0 bits (60), Expect = 4.1
Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 17/94 (18%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
G + ++Y+ ++ N+P + A C + +
Sbjct: 66 GLYEQALQSYSYGALMD---INEPRFPFHAA---ECHLQLGDLD-----------GAESG 108
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK 135
A LA + + K++
Sbjct: 109 FYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142
>3jys_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Length = 499
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 20/82 (24%)
Query: 183 LIVSDLDEPTAEDAIANCLKAEELAPAPWKEN--------QLLIAKCYIEAGEYAKAVQW 234
I ++L+E + P+P E L+A+ Y+ A Y ++
Sbjct: 163 WIEAELNE------------IKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARY 210
Query: 235 LDKAKAIPVVSYESHDLSTTYS 256
+ A V + L+ Y+
Sbjct: 211 TECINACNEVIKAGYQLADNYA 232
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 28.3 bits (63), Expect = 1.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ AI + + A+C ++ GE A+A L A+ +
Sbjct: 72 DLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Score = 28.0 bits (62), Expect = 1.9
Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 45/179 (25%)
Query: 56 ELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNT 115
LN + + LY LA Y E +A + L +S
Sbjct: 12 MLNEISSDTLEQLYSLA---FNQYQSGXYE---DA--------HXVFQALCVLDHYDSRF 57
Query: 116 QKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSF 175
G C A GQ+ I + M + + +L
Sbjct: 58 FLGLGACRQAMGQYD---LAIHS-------YSYGAVMDIXEPRFPFHAAECLLQXGEL-- 105
Query: 176 FERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLL-IAKCYIEAGEYAKAVQ 233
+A + A+EL + +L +EA + K ++
Sbjct: 106 ------------------AEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMK 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 28.2 bits (63), Expect = 1.5
Identities = 6/49 (12%), Positives = 12/49 (24%), Gaps = 1/49 (2%)
Query: 194 EDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIP 242
+ A A L + +C + KA + +
Sbjct: 87 QQAADLYAVAFALGKNDY-TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 28.7 bits (64), Expect = 1.6
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 144 DQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKA 203
+M +A+Q K +Y G L + L+ LD A
Sbjct: 90 QRMPEAVQYIEKASVMYVENGTPDTAAMALD----RAGKLM-EPLDLSKAVHLYQQAAAV 144
Query: 204 EELAPAPWKENQLL--IAKCYIEAGEYAKAVQWLDKAKAI 241
E + +L+ ++ + ++ +A L K K++
Sbjct: 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG;
DAH7P synthase, shikimate pathway, aromatic
biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium
tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A*
3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Length = 462
Score = 28.9 bits (64), Expect = 1.7
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 14 AFV-QFGECAELFAVNNSK--------YPEIDRLLYYGKKDDKAKAYNLTMELNNKQPND 64
AF+ Q G+CAE F N ++ +L YG K + + + D
Sbjct: 79 AFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSAD 138
Query: 65 PDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMEL 108
D L + + +E +++ A AM L
Sbjct: 139 IDALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNL 182
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 29.1 bits (64), Expect = 1.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 216 LLIAKCYIEAGEYAKAVQWLDKAKAIPVVSY-ESHDLS 252
+ + K + G + +A++ L A I V++ H L
Sbjct: 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412
>3mcx_A SUSD superfamily protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE GOL; 1.49A {Bacteroides
thetaiotaomicron}
Length = 477
Score = 28.6 bits (64), Expect = 2.1
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 22/83 (26%)
Query: 183 LIVSDLDEPTAEDAIANCLKAEELAPAPWKEN-------QLLIAKCYIEAGEYAKAVQWL 235
+VSD+ A Q L+++ Y+ GEY KA
Sbjct: 178 QVVSDMSN------------ALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAA 225
Query: 236 DKAKAIPVVSYESHDLSTTYSYK 258
Y L + Y
Sbjct: 226 TDVIKNNGGRY---QLYSYEEYP 245
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.9
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 10/30 (33%)
Query: 34 EIDRL-----LYYGKKDDKAKAY--NLTME 56
+ +L LY DD A A TME
Sbjct: 21 ALKKLQASLKLY---ADDSAPALAIKATME 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 27.9 bits (63), Expect = 3.1
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 31/143 (21%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
++ A+ + P + + G + +K + I+ AP+D
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP---NAVKA-------YTEMIKRAPEDAR 174
Query: 159 LYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQLLI 218
YS + ++ +AIA+C KA E P + +
Sbjct: 175 GYSNRAAALAKLMSF--------------------PEAIADCNKAIEKDPN-FVRAYIRK 213
Query: 219 AKCYIEAGEYAKAVQWLDKAKAI 241
A I EYA A++ LD A+
Sbjct: 214 ATAQIAVKEYASALETLDAARTK 236
Score = 27.9 bits (63), Expect = 3.4
Identities = 32/202 (15%), Positives = 50/202 (24%), Gaps = 53/202 (26%)
Query: 39 LYYGKKDDKA-KAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQ 97
Y ++ D+A + YN EL+ D L A A Y+ E A
Sbjct: 15 FYKARQFDEAIEHYNKAWELHK----DITYLNNRAAA---EYEKGEYE---TA------- 57
Query: 98 GIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDF 157
I A+E K G K+ + K I+ K
Sbjct: 58 -ISTLNDAVEQGREMRADYKVISKSFARIGNAY---HKLGD-------LKKTIEYYQKSL 106
Query: 158 TLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPA-PWKENQL 216
T + L AE + + P +
Sbjct: 107 TEHRTADILT-------------------KLRN--AEKELKKAEAEAYVNPEKAEEARLE 145
Query: 217 LIAKCYIEAGEYAKAVQWLDKA 238
K Y ++ AV+ +
Sbjct: 146 --GKEYFTKSDWPNAVKAYTEM 165
Score = 27.1 bits (61), Expect = 5.1
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 22/95 (23%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
NKA ++ D T + + +YE + E AI+ A E
Sbjct: 29 NKAWELHK-DITYLNNRAAAEYEKGEY--------------------ETAISTLNDAVEQ 67
Query: 207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ + +I+K + G + L K
Sbjct: 68 GRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEY 101
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 27.7 bits (61), Expect = 4.6
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 47 KAKAYNLTMELNNK----QPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA 102
K + Y +E +K + LYR +A + N+ E+++
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM-------NEFESAKGDF------- 374
Query: 103 KKAMELAPNNSNTQKWYGIC 122
+K +E+ P N + +C
Sbjct: 375 EKVLEVNPQNKAARLQISMC 394
Score = 27.0 bits (59), Expect = 7.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 194 EDAIANCLKAEELAPAPWKENQLL--IAKCYIEAGEYAKAVQWLDKAKAI 241
A+ C KA L A K L + + E+ A +K +
Sbjct: 334 TKAVECCDKALGLDSANEK---GLYRRGEAQLLMNEFESAKGDFEKVLEV 380
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 26.8 bits (60), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 215 QLLIAKCYIEAGEYAKAVQWLDKA 238
Q +A ++ +G+Y KA W KA
Sbjct: 21 QYYLADTWVSSGDYQKAEYWAQKA 44
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 27.3 bits (60), Expect = 6.9
Identities = 19/214 (8%), Positives = 39/214 (18%), Gaps = 42/214 (19%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
L P + + E +
Sbjct: 206 ETVQRLLPVLCQAHGLT---PAQVVAIASHDGG------KQALETMQRLLPVL------- 249
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
+A L P+ A Q L + +A + P +
Sbjct: 250 -CQAHGLPPDQVVAIASNIGGKQALETVQRLLP----------VLCQAHGLTPDQVVAIA 298
Query: 162 LKGRYQYEISK----LSFFERKIAV----------LIVSDLDEPTAEDAIANCLKAEELA 207
G + + L + + T + + +A L
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
Query: 208 PAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
P + + L +A +
Sbjct: 359 PDQVVAIASN-GGGKQALETVQRLLPVLCQAHGL 391
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 26.7 bits (60), Expect = 7.1
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 47/167 (28%)
Query: 42 GKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEY 101
+ + + + D+ Y L L +++ + A + Y
Sbjct: 105 EMYKEAKDMFEKALRAG---MENGDLFYMLGTV---LVKLEQPK---LA--------LPY 147
Query: 102 AKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYS 161
++A+EL N++ + +G+C+ G E + + P +
Sbjct: 148 LQRAVELNENDTEARFQFGMCLANEGMLD---EALSQ-------FAAVTEQDPGHADAFY 197
Query: 162 LKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAP 208
G E A+ KA ++ P
Sbjct: 198 NAGVTYAYKENR--------------------EKALEMLDKAIDIQP 224
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 25.9 bits (57), Expect = 8.0
Identities = 14/92 (15%), Positives = 19/92 (20%), Gaps = 21/92 (22%)
Query: 147 NKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEEL 206
Q P+ + G Q E K AI A L
Sbjct: 41 EAVCQKEPEREEAWRSLGLTQAENEKD--------------------GLAIIALNHARML 80
Query: 207 APAPWKENQLLIAKCYIEAGEYAKAVQWLDKA 238
P +A + A+ L
Sbjct: 81 DPK-DIAVHAALAVSHTNEHNANAALASLRAW 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 8.9
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 43 KKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA 102
K + A + N+ L R +A + + + A
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV------NDFELA--------RADF 253
Query: 103 KKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIK 137
+K ++L PNN + Q +++I+
Sbjct: 254 QKVLQLYPNNKAAKT----------QLAVCQQRIR 278
>3l22_A SUSD superfamily protein; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 2.05A {Bacteroides fragilis}
Length = 441
Score = 26.7 bits (59), Expect = 9.9
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 22/66 (33%)
Query: 183 LIVSDLDEPTAEDAIANCLKAEELAPAPWKEN----------QLLIAKCYIEAGEYAKAV 232
I+SDL+ L +L + Y+ E+ KA+
Sbjct: 174 HILSDLEN------------ISALDTEVNTYTGVTHATQAAANMLKMRVYMAMNEWDKAI 221
Query: 233 QWLDKA 238
+
Sbjct: 222 TAGELV 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,910,110
Number of extensions: 226614
Number of successful extensions: 1183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 219
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)