RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9159
(259 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 34.6 bits (78), Expect = 0.010
Identities = 30/223 (13%), Positives = 61/223 (27%), Gaps = 51/223 (22%)
Query: 39 LYYGKKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEK----- 93
+ + + A + + PN D L R +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 94 ----------YILQG-----IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKC 138
Y QG I+ ++A+EL P+ + + G ++
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED---- 292
Query: 139 GVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIA 198
N A+++ P + + E + E+A+
Sbjct: 293 ------CYNTALRLCPTHADSLNNLANIKREQGNI--------------------EEAVR 326
Query: 199 NCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
KA E+ P + +A + G+ +A+ +A I
Sbjct: 327 LYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Score = 30.4 bits (67), Expect = 0.19
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 34/187 (18%)
Query: 5 LFVLSLFQFAFVQFGECAELFAVNNSKYPEIDRLLYYGKKDDKA-KAYNLTMELNNKQPN 63
L +F A + L + + + + Y D A Y +EL P+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PH 269
Query: 64 DPDVLYRLAKACHCLYDIKRRENDKEASEKYIL--------------------QGIEYAK 103
PD LA A + E+ + + + + +
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 104 KAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLK 163
KA+E+ P + + G+ Q +AI+++P YS
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALM----------HYKEAIRISPTFADAYSNM 379
Query: 164 GRYQYEI 170
G E+
Sbjct: 380 GNTLKEM 386
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/202 (10%), Positives = 49/202 (24%), Gaps = 17/202 (8%)
Query: 43 KKDDKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYA 102
+ D A M+L ++P++ VL L+ + + ++
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRS--------AHFS 56
Query: 103 KKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSL 162
A++ P + G GQ Q E + + +
Sbjct: 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116
Query: 163 KGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKEN---QLLIA 219
+ + + + A + A +
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 220 KCYIEAGEYAKAVQWLDKAKAI 241
+ GE A+ +KA +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTL 198
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 33.4 bits (75), Expect = 0.022
Identities = 11/171 (6%), Positives = 43/171 (25%), Gaps = 1/171 (0%)
Query: 71 LAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQ 130
L + R + + + + + +N ++ + +
Sbjct: 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195
Query: 131 SLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDE 190
+ + + + +Q A Y + + + + +
Sbjct: 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL 255
Query: 191 PTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAI 241
+ ++ + E +L+ + + +Q+ KA+
Sbjct: 256 QSELESCKELQELEPENKWCL-LTIILLMRALDPLLYEKETLQYFSTLKAV 305
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 30.9 bits (69), Expect = 0.16
Identities = 14/147 (9%), Positives = 44/147 (29%), Gaps = 7/147 (4%)
Query: 96 LQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEK-IKCGVVFRDQMNKAIQMAP 154
LQ +Y ++A L + ++++ + Q L +K + + + +
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWN 62
Query: 155 KDFTLYSLKGRYQYEISKLSFFER-KIAVLIVSDLDEPTA--EDAIANCLKAEELAPAPW 211
F + Q + + R ++ + L+ + + + P
Sbjct: 63 HAF--KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PC 119
Query: 212 KENQLLIAKCYIEAGEYAKAVQWLDKA 238
+ + + + V+ +
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSS 146
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 30.0 bits (67), Expect = 0.24
Identities = 12/146 (8%), Positives = 45/146 (30%), Gaps = 30/146 (20%)
Query: 97 QGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKD 156
Q +E +A++ +P +++ + + + +G F+ +Q+ ++I++ P+
Sbjct: 14 QALELLIEAIKASPKDASLRSSFIELLCIDGDFER----------ADEQLMQSIKLFPEY 63
Query: 157 FTLYSLKGRYQYEISKLSFFERKIAVLIVSDLDEPTAEDAIANCLKAEELAPAPWKENQL 216
S + + A ++ +
Sbjct: 64 LPGASQLRHLVK-------------------AAQARKDFAQGAATAKVLGENEELTKSLV 104
Query: 217 LIAKCYIEAGEYAKAVQWLDKAKAIP 242
+ + +Y + + + + +
Sbjct: 105 S-FNLSMVSQDYEQVSELALQIEELR 129
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor
biosynthesis protein DIP0503 {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 163
Score = 27.8 bits (61), Expect = 0.96
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 179 KIAVLIVSD-----LDEPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQ 233
K A+++VSD E A + + ++EL ++ ++ + A A
Sbjct: 4 KSAIIVVSDRISTGTRENKALPLLQRLM-SDELQDYSYELISEVVVPEGYDTVVEAIATA 62
Query: 234 WLDKAKAIPVVS 245
A+ I
Sbjct: 63 LKQGARFIITAG 74
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 25.8 bits (56), Expect = 2.9
Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 46 DKAKAYNLTMELNNKQPNDPDVLYRLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKA 105
K + + D ++ LA + L + + + ++Y +
Sbjct: 53 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE--------------KALKYVRGL 98
Query: 106 MELAPNNSNTQK 117
++ P N+ ++
Sbjct: 99 LQTEPQNNQAKE 110
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 26.3 bits (57), Expect = 3.4
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 175 FFERKIAVLIVSD---LDEPTAEDAIANCLKA 203
F +IA+L VS+ ++ T+ + + +
Sbjct: 6 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQE 37
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga
maritima [TaxId: 2336]}
Length = 217
Score = 25.9 bits (57), Expect = 3.9
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 85 ENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVV 141
END E I++ +E LAP+ N Q W G S + + G+
Sbjct: 134 ENDLEELPPEIVKIVEMTI----LAPSALNRQPWKIKYTGGELCI-SSERPVDLGIA 185
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio fischeri [TaxId: 668]}
Length = 217
Score = 26.1 bits (56), Expect = 4.2
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
+ +A+ L+ ++ N+Q W I + ++ Q + + I+
Sbjct: 28 LAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFAN---MHQFNQPHIKACSHVIL 84
Query: 159 LYSLKGRYQYEISKL 173
+ + + +
Sbjct: 85 FANKLSYTRDDYDVV 99
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260
{Streptococcus mutans [TaxId: 1309]}
Length = 199
Score = 25.9 bits (56), Expect = 4.2
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 79 YDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICV 123
I + S+ ++ I+ A++ AP+ N+Q + +
Sbjct: 11 RSIYALGKTVDLSKAELVALIQ---NAIKQAPSAFNSQTSRALVL 52
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor
complex {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 24.1 bits (52), Expect = 4.3
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 118 WYGICVGANGQFQSLKE-KIKCGV 140
YG C G +F S KE + CGV
Sbjct: 33 PYGGCQGNGNKFYSEKECREYCGV 56
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8
[TaxId: 274]}
Length = 200
Score = 25.7 bits (55), Expect = 4.8
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
+ +A AP+ N Q W + V ++L+E + + A +
Sbjct: 28 LREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAFGQAHVEEAPVVLVLYADLEDA 87
Query: 159 LYSLKGRYQYEISKLSFFERKIAV 182
L L + +K A+
Sbjct: 88 LAHLDEVIHPGVQGERREAQKQAI 111
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 25.5 bits (54), Expect = 6.7
Identities = 26/240 (10%), Positives = 66/240 (27%), Gaps = 11/240 (4%)
Query: 12 QFAFVQFGECAELFAVNNSKYPEI--DRLLYYGKKDDKAKAYNLTMELNNKQPNDPDVLY 69
+ + + A+ + + ++ +R + Y +A A N + +P+ P+V
Sbjct: 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 75
Query: 70 RLAKACHCLYDIKRRENDKEASEKYILQGIEYAKKAMELAPNNSNTQKWYGICVGANGQF 129
L + ++ + + +
Sbjct: 76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF---- 131
Query: 130 QSLKEKIKCGVVFRDQMNKAIQMAPKDFTLYSLKGRYQYEISKLSFFERKIAVLIVSDLD 189
+ FR + + + ++ + K + + + + +
Sbjct: 132 ----YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 187
Query: 190 EPTAEDAIANCLKAEELAPAPWKENQLLIAKCYIEAGEYAKAVQWLDKAKAIPVVSYESH 249
+ E A+ LA E + K Y+ G+ A A A V ++ H
Sbjct: 188 QTLMERLKADATDNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 25.2 bits (54), Expect = 7.7
Identities = 11/80 (13%), Positives = 31/80 (38%)
Query: 99 IEYAKKAMELAPNNSNTQKWYGICVGANGQFQSLKEKIKCGVVFRDQMNKAIQMAPKDFT 158
++ +A++ AP++ N Q+ I V + + + E + A +
Sbjct: 27 LDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISELAGGQPWIDQAPVFLLFCADFNRA 86
Query: 159 LYSLKGRYQYEISKLSFFER 178
+L+ + +++ + E
Sbjct: 87 KIALEDLHDFKMEITNGLES 106
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 207
Score = 24.8 bits (54), Expect = 8.8
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 177 ERKIAVLIVSDLDEPTAEDAIANCLKAEELA 207
R I ++ S+ E I LK+ E+
Sbjct: 7 WRGICIISASEDAFSAGE-TIKEKLKSFEIP 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,529
Number of extensions: 43703
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 42
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)