Query psy9160
Match_columns 297
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 20:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12210 Hrs_helical: Hepatocy 100.0 2E-49 4.3E-54 319.7 12.0 96 143-238 1-96 (96)
2 KOG1818|consensus 100.0 1.2E-44 2.6E-49 362.4 17.0 244 41-293 244-497 (634)
3 PF03127 GAT: GAT domain; Int 93.4 0.51 1.1E-05 37.4 7.8 82 142-224 9-90 (100)
4 KOG0163|consensus 90.5 23 0.00049 39.4 17.9 124 138-271 862-986 (1259)
5 PF02050 FliJ: Flagellar FliJ 82.3 19 0.00041 27.1 12.4 91 142-240 17-111 (123)
6 PF11214 Med2: Mediator comple 81.3 21 0.00045 30.3 9.6 56 143-201 11-72 (105)
7 KOG1818|consensus 72.8 81 0.0017 33.9 13.2 23 50-72 301-323 (634)
8 PRK05689 fliJ flagellar biosyn 70.7 60 0.0013 26.9 12.8 92 143-237 36-127 (147)
9 TIGR02473 flagell_FliJ flagell 69.2 58 0.0013 26.2 12.8 91 141-234 31-121 (141)
10 KOG2412|consensus 69.2 1.3E+02 0.0029 32.1 13.7 61 175-239 176-237 (591)
11 KOG1029|consensus 68.0 1.3E+02 0.0027 34.0 13.6 88 200-287 318-430 (1118)
12 PF03114 BAR: BAR domain; Int 66.0 76 0.0017 26.3 11.9 52 182-233 125-189 (229)
13 cd07589 BAR_DNMBP The Bin/Amph 64.0 56 0.0012 29.0 8.7 55 174-228 88-142 (195)
14 smart00325 RhoGEF Guanine nucl 63.6 23 0.0005 28.9 5.8 53 142-198 9-64 (180)
15 PF00621 RhoGEF: RhoGEF domain 62.1 24 0.00051 28.3 5.5 52 142-197 9-63 (180)
16 cd07652 F-BAR_Rgd1 The F-BAR ( 58.8 1.5E+02 0.0032 27.2 15.7 108 181-292 86-226 (234)
17 cd00160 RhoGEF Guanine nucleot 52.4 49 0.0011 27.1 6.0 54 142-199 12-68 (181)
18 PTZ00266 NIMA-related protein 51.6 3.2E+02 0.0069 31.0 13.6 10 2-11 203-212 (1021)
19 smart00726 UIM Ubiquitin-inter 51.5 6 0.00013 25.6 0.4 20 51-70 2-21 (26)
20 smart00721 BAR BAR domain. 51.3 79 0.0017 27.2 7.3 42 175-216 121-162 (239)
21 COG2882 FliJ Flagellar biosynt 50.3 1.8E+02 0.004 25.8 13.6 81 157-240 50-130 (148)
22 PTZ00121 MAEBL; Provisional 49.8 5.3E+02 0.012 31.4 15.0 48 210-257 1210-1257(2084)
23 PF09726 Macoilin: Transmembra 49.5 3.7E+02 0.0081 29.1 15.6 59 176-234 462-521 (697)
24 COG1895 Uncharacterized conser 46.8 28 0.00062 30.5 3.9 50 91-161 73-122 (129)
25 PRK07720 fliJ flagellar biosyn 46.7 1.7E+02 0.0037 24.3 12.8 92 142-236 35-126 (146)
26 KOG0742|consensus 45.5 2.3E+02 0.0049 30.2 10.6 72 187-274 94-165 (630)
27 cd07641 BAR_ASAP1 The Bin/Amph 44.5 2.8E+02 0.0061 26.2 10.9 97 171-268 56-172 (215)
28 TIGR03007 pepcterm_ChnLen poly 44.4 3.2E+02 0.0069 26.8 13.7 17 174-190 275-291 (498)
29 COG3064 TolA Membrane protein 44.4 2.1E+02 0.0045 29.1 9.8 43 235-277 96-138 (387)
30 KOG2002|consensus 43.3 5.4E+02 0.012 29.5 13.6 41 245-292 838-878 (1018)
31 cd07599 BAR_Rvs167p The Bin/Am 41.5 2.5E+02 0.0055 24.8 10.0 43 175-217 97-140 (216)
32 PF02809 UIM: Ubiquitin intera 40.7 6.7 0.00015 23.6 -0.6 15 51-65 3-17 (18)
33 PF10168 Nup88: Nuclear pore c 39.3 5.3E+02 0.012 27.9 17.1 84 170-255 532-620 (717)
34 PF02646 RmuC: RmuC family; I 39.0 2E+02 0.0043 27.4 8.5 61 140-216 2-62 (304)
35 PF08317 Spc7: Spc7 kinetochor 38.4 2.2E+02 0.0048 27.1 8.8 88 175-266 174-261 (325)
36 PRK06569 F0F1 ATP synthase sub 37.8 3E+02 0.0064 24.6 9.7 58 185-244 26-83 (155)
37 PF07946 DUF1682: Protein of u 34.8 2.6E+02 0.0056 26.8 8.6 68 214-283 253-320 (321)
38 PTZ00266 NIMA-related protein 34.4 6.4E+02 0.014 28.7 12.6 15 226-240 473-487 (1021)
39 cd06891 PX_Vps17p The phosphoi 34.1 88 0.0019 27.4 5.0 24 140-163 101-124 (140)
40 PF10475 DUF2450: Protein of u 33.2 4.1E+02 0.0088 24.8 9.7 56 202-257 71-127 (291)
41 PF02344 Myc-LZ: Myc leucine z 33.2 62 0.0013 22.5 3.1 24 194-217 7-30 (32)
42 KOG1087|consensus 32.5 1.2E+02 0.0026 31.4 6.3 78 140-217 191-270 (470)
43 PF12037 DUF3523: Domain of un 31.5 5E+02 0.011 25.3 16.0 77 190-269 53-131 (276)
44 PRK09841 cryptic autophosphory 31.5 6.6E+02 0.014 26.7 12.8 48 147-194 277-324 (726)
45 PF13801 Metal_resist: Heavy-m 31.1 1.6E+02 0.0034 22.2 5.4 58 175-235 60-117 (125)
46 PRK13428 F0F1 ATP synthase sub 29.8 5.9E+02 0.013 25.7 16.3 98 182-281 14-125 (445)
47 PF02344 Myc-LZ: Myc leucine z 29.5 1.5E+02 0.0033 20.6 4.5 24 233-256 6-29 (32)
48 PRK11637 AmiB activator; Provi 29.1 5.6E+02 0.012 25.1 18.9 92 139-236 109-204 (428)
49 PRK07352 F0F1 ATP synthase sub 28.4 3.9E+02 0.0084 23.0 16.7 104 176-281 26-143 (174)
50 PHA02109 hypothetical protein 27.8 1.8E+02 0.004 27.4 6.2 56 192-263 171-228 (233)
51 KOG0978|consensus 27.7 6.7E+02 0.014 27.6 11.0 106 139-244 505-615 (698)
52 PF06222 Phage_TAC: Phage tail 27.3 1.3E+02 0.0028 26.4 4.8 57 138-196 60-116 (127)
53 KOG0250|consensus 27.0 1E+03 0.023 27.6 15.5 129 146-281 698-835 (1074)
54 PRK14471 F0F1 ATP synthase sub 26.5 4E+02 0.0087 22.6 16.1 99 180-280 19-131 (164)
55 PTZ00121 MAEBL; Provisional 26.4 6.3E+02 0.014 30.8 11.0 45 214-259 1130-1174(2084)
56 PF03190 Thioredox_DsbH: Prote 26.3 33 0.00073 30.6 1.1 17 91-107 58-74 (163)
57 cd07603 BAR_ACAPs The Bin/Amph 26.1 5E+02 0.011 23.5 10.1 54 179-234 69-123 (200)
58 PRK10972 Z-ring-associated pro 25.3 2.7E+02 0.0059 23.5 6.2 44 147-193 25-68 (109)
59 KOG0811|consensus 25.3 6.3E+02 0.014 24.4 10.8 28 138-165 22-49 (269)
60 KOG2072|consensus 25.2 1.1E+03 0.023 27.1 18.4 37 174-210 550-586 (988)
61 PF14916 CCDC92: Coiled-coil d 24.9 2.4E+02 0.0051 21.9 5.3 33 212-244 3-35 (60)
62 PF06008 Laminin_I: Laminin Do 24.7 5.4E+02 0.012 23.5 9.5 92 146-240 54-155 (264)
63 PF09658 Cas_Csx9: CRISPR-asso 24.2 1.8E+02 0.004 29.2 5.8 56 137-192 9-79 (377)
64 PF09731 Mitofilin: Mitochondr 23.5 7.9E+02 0.017 25.0 16.1 114 171-286 239-355 (582)
65 KOG3284|consensus 23.5 77 0.0017 29.9 2.9 33 138-174 76-108 (213)
66 PF03670 UPF0184: Uncharacteri 23.5 4.2E+02 0.0091 21.8 7.8 50 145-210 27-76 (83)
67 TIGR01069 mutS2 MutS2 family p 23.4 9.8E+02 0.021 26.0 12.7 26 184-209 507-532 (771)
68 KOG2002|consensus 22.9 1.2E+03 0.026 26.9 14.4 77 93-171 713-806 (1018)
69 KOG0979|consensus 22.4 1.2E+03 0.025 27.2 11.9 128 138-278 125-265 (1072)
70 COG5236 Uncharacterized conser 22.1 90 0.0019 32.1 3.3 25 86-110 358-382 (493)
71 KOG2884|consensus 21.6 48 0.001 31.9 1.3 24 48-71 210-233 (259)
72 TIGR03752 conj_TIGR03752 integ 20.7 1E+03 0.022 25.1 10.7 58 175-232 60-118 (472)
73 PRK14734 coaE dephospho-CoA ki 20.6 92 0.002 27.4 2.8 48 143-194 152-199 (200)
74 cd07591 BAR_Rvs161p The Bin/Am 20.6 3.8E+02 0.0083 24.5 6.8 44 174-217 95-138 (224)
75 PF13868 Trichoplein: Tumour s 20.2 7.1E+02 0.015 23.2 15.3 73 193-265 173-261 (350)
No 1
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=100.00 E-value=2e-49 Score=319.72 Aligned_cols=96 Identities=72% Similarity=1.074 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALN 222 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALD 222 (297)
++||++|+++|++|||||+||++|||||+||+||||||++||+|||+||+||+++||+|+|||+|||||++|+|||+|||
T Consensus 1 ~ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlD 80 (96)
T PF12210_consen 1 EEFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEARAALD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9160 223 ALREEHNEKLRREAQI 238 (297)
Q Consensus 223 aLReeH~eklr~~aeE 238 (297)
+||++|++||++++||
T Consensus 81 alR~eH~~klrr~aEE 96 (96)
T PF12210_consen 81 ALREEHREKLRRQAEE 96 (96)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998886
No 2
>KOG1818|consensus
Probab=100.00 E-value=1.2e-44 Score=362.41 Aligned_cols=244 Identities=37% Similarity=0.467 Sum_probs=205.9
Q ss_pred CCCCCcccccCCCChHHHHHhchhHHHhcCCCCCCCCCCCCCC--C----CCCccc-CCCCChHHHhhhhhHHHHhhhcC
Q psy9160 41 SGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSG--Y----HHQEED-TGNSNPELAKYLDRSYWEQKKYG 113 (297)
Q Consensus 41 ~~~~~~~e~~Eeeel~LA~aLs~se~e~~~~sps~~~~~~~~~--~----~p~~e~-~s~~DPELARYLNRsYWEqr~~~ 113 (297)
.+.....++.|++++.||++||++|+++...+++....+.+.. + ++.... .++++++|||||||.||+.++..
T Consensus 244 k~r~~~~~~keeed~~lAi~lSq~E~~~~~~~~~~y~~~~~~~~v~~q~~~~~~~~s~~~~~q~la~~l~r~~~~~~k~~ 323 (634)
T KOG1818|consen 244 KDRAKALEEKEEEDLSLAIALSQSEAEAACSSPSSYRAPQPANDVLSQAIEPAELGSLEEVSQELARYLNRMYWRSKKQS 323 (634)
T ss_pred ccccccccchhhHHHHHHHHHhHHHHHHhcCCCcccccCCCcccccccccchhccCChhhcchHhHhhHHHHHHhhhhhh
Confidence 3455667888999999999999999999955444333322211 1 111111 24899999999999999988876
Q ss_pred CCCCCC-CCCCCCCCCCCCC-CCCC-CCchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHH
Q psy9160 114 THGSHY-STDHHMNHTSGVT-SPDE-ASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRL 190 (297)
Q Consensus 114 e~~s~~-spsap~~~t~~~~-~p~~-~~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qL 190 (297)
.+++.+ ++++|+|....++ .-.+ +.+..++.|.. +|+|||+||..+||+|.||++|++||++|+.+|.++
T Consensus 324 ~srs~~~t~~~p~Ptp~~ip~g~~s~~~k~~~~~fa~-------~~~~~~~S~l~~~~~I~nds~~~tL~q~l~~~~kq~ 396 (634)
T KOG1818|consen 324 SSRSMPHTPQAPPPTPTPIPPGFHSGDTKGQSDRFAG-------FFPNEMKSSLIRSRSITNDSKVQTLKQSLTALHKQL 396 (634)
T ss_pred hcccCCCCCCCCCCCCCCCCccccCcchhhhHHHHhh-------hccccccchhhcccccccccccccHHHHHHHHHhcc
Confidence 566666 6776666311122 1122 34567778877 999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 191 LKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLAL 270 (297)
Q Consensus 191 L~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~al 270 (297)
|. |..++++|.|||+|||++++|+++|.|+|.||++|++++++.+|+++||++|+|+++|++||++|++|+.+||+.+|
T Consensus 397 l~-~~~~d~kr~~~e~Lqe~~~~i~~~~~a~~~lree~~~~~~ri~e~q~rq~~~~~qd~l~~~r~~~~~~~~~q~e~~l 475 (634)
T KOG1818|consen 397 LP-LGSLDNKRQAYEALQEMLAQISRLREALDELREEHRERLGRIAEEQKRQRQMQLQDPLDIMRMKKQEYLELQRESAL 475 (634)
T ss_pred cc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHhccCChHHHHHhhhccccccccccHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy9160 271 QKIQEQEYEMQRRQEQQKQYYMQ 293 (297)
Q Consensus 271 qriQeqerEmqmr~eqQk~~y~m 293 (297)
+++|++++||+||+++|++.| |
T Consensus 476 q~~q~~~~e~~~~~~~q~as~-~ 497 (634)
T KOG1818|consen 476 QRNQSQEQELQMRMEQQEASV-M 497 (634)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-h
Confidence 999999999999999999999 5
No 3
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=93.43 E-value=0.51 Score=37.44 Aligned_cols=82 Identities=13% Similarity=0.264 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAAL 221 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~AL 221 (297)
...=|..+++.|++|.+-+.....-+.+..++..++.||.++-.|+++|+++|....|.- +...|-.==+.|..|=.-.
T Consensus 9 ~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee-~l~~lL~~ND~L~~~l~~Y 87 (100)
T PF03127_consen 9 RRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEE-LLGELLQANDELNQALERY 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHH
Confidence 345567888999998887777766555555558999999999999999999999987776 5544443333333343444
Q ss_pred HHH
Q psy9160 222 NAL 224 (297)
Q Consensus 222 DaL 224 (297)
|.|
T Consensus 88 ~~l 90 (100)
T PF03127_consen 88 DRL 90 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 4
>KOG0163|consensus
Probab=90.47 E-value=23 Score=39.43 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHH
Q psy9160 138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDA 217 (297)
Q Consensus 138 ~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeA 217 (297)
+-+++..=++++-.+|+..|..||+- -|++ ..+++-|..+-.---.|++.++- +......=+.+|-.|.|+
T Consensus 862 ~r~e~~~~~~~~~~~id~lv~~IK~~-----~~tq-~~~~~~~d~~~~~~e~~~~~l~s---k~~q~~~e~er~rk~qE~ 932 (1259)
T KOG0163|consen 862 GREEIISGANSTYRQIDDLVKKIKMP-----RITQ-REMNSEYDVAVKNYEKLVKRLDS---KEQQQIEELERLRKIQEL 932 (1259)
T ss_pred chHHHHhhhhhHHHHHHHHHHHhccc-----ccch-HHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Confidence 33445555566666778888888762 2332 34556666655555556665553 222233334555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 218 RAALNALREEHNEKLRREAQI-AERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQ 271 (297)
Q Consensus 218 R~ALDaLReeH~eklr~~aeE-aeRqrQmQmaqKLeiMRqKKqEyL~yQrq~alq 271 (297)
-.+=.+ |.|-.+|.|++++| ...-++|-.--|++-=++++||--+.+.++.++
T Consensus 933 ~E~ER~-rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q 986 (1259)
T KOG0163|consen 933 AEAERK-RREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQ 986 (1259)
T ss_pred HHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 555444 45555565555554 445567888899999999999876666666666
No 5
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=82.31 E-value=19 Score=27.10 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHH----HHhhhhhhhhhhhHHHHHhHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYI----QQKDDKRVYYEGLQDKLTQVKDA 217 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i----~~~ee~R~~~E~LQDKL~qIkeA 217 (297)
...-+..|.+...-+...+.+.. .|.||. .|.....+-..|-..| ...+..+..++..++.|..-.--
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~-~~~s~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQ-QGVSVA-------QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT------SGGGHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-CCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655544 344332 3333444444444444 45556677778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 218 RAALNALREEHNEKLRREAQIAE 240 (297)
Q Consensus 218 R~ALDaLReeH~eklr~~aeEae 240 (297)
+.+++-|++.|....+.+..-+|
T Consensus 89 ~k~~e~L~e~~~~~~~~~~~r~E 111 (123)
T PF02050_consen 89 RKKLEKLKERRREEYQQEEERRE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888898888877766655444
No 6
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=81.30 E-value=21 Score=30.33 Aligned_cols=56 Identities=29% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHH------HhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhh
Q psy9160 143 DDFIRALKSQVEIFV------NRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKR 201 (297)
Q Consensus 143 eef~~~l~sqVeiFv------NRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R 201 (297)
.-|=+-|+.+.++|| ||..||.--|=+-. -..+|-.+|+.+|.-|=...-.+.+-+
T Consensus 11 ~~fdDILk~s~~m~~qeqik~~ql~s~vi~G~n~~---l~k~L~eki~~Fh~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 11 QCFDDILKVSGEMFVQEQIKNNQLQSNVITGFNNQ---LQKQLSEKIHKFHSILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688999999995 55555555554333 266777777777776544443333333
No 7
>KOG1818|consensus
Probab=72.78 E-value=81 Score=33.92 Aligned_cols=23 Identities=43% Similarity=0.817 Sum_probs=19.8
Q ss_pred cCCCChHHHHHhchhHHHhcCCC
Q psy9160 50 TGNSNPELAKYLDRSYWEQKKVP 72 (297)
Q Consensus 50 ~Eeeel~LA~aLs~se~e~~~~s 72 (297)
.++....||.+|++.||+.++..
T Consensus 301 ~~~~~q~la~~l~r~~~~~~k~~ 323 (634)
T KOG1818|consen 301 LEEVSQELARYLNRMYWRSKKQS 323 (634)
T ss_pred hhhcchHhHhhHHHHHHhhhhhh
Confidence 36678899999999999988874
No 8
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=70.70 E-value=60 Score=26.88 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALN 222 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALD 222 (297)
..-+..|..-.....+++.++...|-++. .+.....-|..++..+-..-+.....+.-.+.....+...+--+.+|+
T Consensus 36 ~~~L~~L~~y~~~y~~~~~~~~~~g~~~~---~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lE 112 (147)
T PRK05689 36 EQQLKMLEDYRLEYRQQLNDRGSAGMTSS---WWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALE 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565556666677777777777665 333444446666666666777777778888888888888888899999
Q ss_pred HHHHHHHHHHHHHHH
Q psy9160 223 ALREEHNEKLRREAQ 237 (297)
Q Consensus 223 aLReeH~eklr~~ae 237 (297)
-|++.|...-+..+.
T Consensus 113 kL~ek~~~~~~~~e~ 127 (147)
T PRK05689 113 TLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877665543
No 9
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=69.24 E-value=58 Score=26.16 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHH
Q psy9160 141 ELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAA 220 (297)
Q Consensus 141 e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~A 220 (297)
..+..+..|......+.+.+.+..+.|-+|. .+...-.-+..+...+-..-..+...+...+..+..|..-.-.+.+
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~---~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~ 107 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGAGTSAL---ELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777776667775544 2222223344444444444555666677777777777777777888
Q ss_pred HHHHHHHHHHHHHH
Q psy9160 221 LNALREEHNEKLRR 234 (297)
Q Consensus 221 LDaLReeH~eklr~ 234 (297)
++-|++.+...-+.
T Consensus 108 lekL~ek~~~~~~~ 121 (141)
T TIGR02473 108 LEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776665544
No 10
>KOG2412|consensus
Probab=69.16 E-value=1.3e+02 Score=32.10 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=35.2
Q ss_pred hhhhHHHhhhhhHHHHHHHHH-HhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQ-QKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIA 239 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~-~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEa 239 (297)
+|...|+.+-.|..++++.|. +.+-- -+.-..+.||+.-+.+...=|.|-+++.++.+||-
T Consensus 176 ~~~~~~~r~~e~Q~qv~qsl~~el~~i----~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~ 237 (591)
T KOG2412|consen 176 TRKEVKRRLLEEQNQVLQSLDTELQAI----QREKQRKEQIRERKERSEEKREEAERKRRAHQEEL 237 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 445556666677777777666 32221 12234566777777777777766665555444443
No 11
>KOG1029|consensus
Probab=67.98 E-value=1.3e+02 Score=33.96 Aligned_cols=88 Identities=30% Similarity=0.442 Sum_probs=48.4
Q ss_pred hhhhhhhhHHHHHhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------
Q psy9160 200 KRVYYEGLQDKLTQVKD--------ARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMR----KKK--------- 258 (297)
Q Consensus 200 ~R~~~E~LQDKL~qIke--------AR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMR----qKK--------- 258 (297)
++.-|+.=|-.|..-|- -|+-+.-.-+|-.+|+.++-.|+||.+|+-++.-|+-=| |+.
T Consensus 318 rkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~ 397 (1118)
T KOG1029|consen 318 RKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIER 397 (1118)
T ss_pred hHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456665555543322 233344444555667777888899999988877775332 211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 259 ----QEYLQYQRNLALQKIQEQEYEMQRRQEQQ 287 (297)
Q Consensus 259 ----qEyL~yQrq~alqriQeqerEmqmr~eqQ 287 (297)
.+-|+-||++-..|+--+|---||-+||-
T Consensus 398 rEaar~ElEkqRqlewErar~qem~~Qk~reqe 430 (1118)
T KOG1029|consen 398 REAAREELEKQRQLEWERARRQEMLNQKNREQE 430 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 12345555555555554444444444443
No 12
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=66.02 E-value=76 Score=26.33 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHH-------------HHHHHHHHHHHHHHHHHH
Q psy9160 182 NITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVK-------------DARAALNALREEHNEKLR 233 (297)
Q Consensus 182 ~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIk-------------eAR~ALDaLReeH~eklr 233 (297)
.+...-..+-+.|...+.+|..|+....++..++ +|+.+++++.++....|.
T Consensus 125 ~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~ 189 (229)
T PF03114_consen 125 EFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELP 189 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3337777788889999999999999999988755 344555555555444443
No 13
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=64.00 E-value=56 Score=29.00 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.9
Q ss_pred chhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy9160 174 SSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEH 228 (297)
Q Consensus 174 ssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH 228 (297)
.+|-.-..++..+++-.-+.|...+++...|++.+.++..++.|..-+...++++
T Consensus 88 ~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k~~k~e~~l~~a~~~y 142 (195)
T cd07589 88 KLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKERGGKVDEELEEAANQY 142 (195)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 5577777888889999999999999999999999999877555544444444444
No 14
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=63.65 E-value=23 Score=28.94 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHH---hhhhhHHHHHHHHHHhh
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFV---NITTMHSRLLKYIQQKD 198 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~---~lt~MH~qLL~~i~~~e 198 (297)
...||+.|+.-++.|...++.... +.++.-+.++|. .|...|..+|..+++.-
T Consensus 9 E~~Yv~~L~~l~~~y~~~l~~~~~----~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~ 64 (180)
T smart00325 9 ERNYVRDLKLLVEVFLKPLKKELK----LLSPNELETLFGNIEEIYEFHRDFLDELEERI 64 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC----CCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999997632 677788999998 66778888888777643
No 15
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=62.09 E-value=24 Score=28.30 Aligned_cols=52 Identities=17% Similarity=0.532 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHH---HhhhhhHHHHHHHHHHh
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLF---VNITTMHSRLLKYIQQK 197 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF---~~lt~MH~qLL~~i~~~ 197 (297)
...||..|+.-+++|.+-|... ..+.+...+..|| ..|...|..++..|...
T Consensus 9 E~~y~~~L~~l~~~~~~~l~~~----~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~ 63 (180)
T PF00621_consen 9 ERSYVEDLEILVEVFLKPLRKR----SPLLSEDEIKSLFGNIEELIEIHQQLLESLEER 63 (180)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH----TTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cccCCHHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 4579999999999999999875 3455555688898 66778888888888773
No 16
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=58.75 E-value=1.5e+02 Score=27.18 Aligned_cols=108 Identities=21% Similarity=0.277 Sum_probs=68.1
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhh--------hhHHHHHhHHHHHHHHHHHHHHHH-----------------------
Q psy9160 181 VNITTMHSRLLKYIQQKDDKRVYYE--------GLQDKLTQVKDARAALNALREEHN----------------------- 229 (297)
Q Consensus 181 ~~lt~MH~qLL~~i~~~ee~R~~~E--------~LQDKL~qIkeAR~ALDaLReeH~----------------------- 229 (297)
.+|+.|+..|..++.+++..|..+. .++|-...+.-|+...+.+-+|+.
T Consensus 86 ~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~ 165 (234)
T cd07652 86 KALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQ 165 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHHH
Confidence 3456677777777777777776332 234444455666666666666653
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9160 230 --EKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292 (297)
Q Consensus 230 --eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~alqriQeqerEmqmr~eqQk~~y~ 292 (297)
+.+.+.++++ ....+.||..--..++|+...-|--++.+||+-..|+-...-.|-+.|.
T Consensus 166 ~Ee~~~~K~~~A----~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~~~~~~~ 226 (234)
T cd07652 166 HEDELLRKVQAA----DQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRLQYQKYA 226 (234)
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 2222222322 3345567777788888998888999999999887776555555555554
No 17
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=52.36 E-value=49 Score=27.05 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHH---hhhhhHHHHHHHHHHhhh
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFV---NITTMHSRLLKYIQQKDD 199 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~---~lt~MH~qLL~~i~~~ee 199 (297)
...||+.|+.-++.|...++..... .+...+.+||. .|-.+|..+|..|...-.
T Consensus 12 E~~Yv~~L~~l~~~y~~~l~~~~~~----~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~ 68 (181)
T cd00160 12 ERNYVRDLKLLVEVFLKPLDKELLP----LSPEEVELLFGNIEEIYEFHRIFLKSLEERVE 68 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC----CCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999876332 44566788887 566788888887776543
No 18
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=51.63 E-value=3.2e+02 Score=31.01 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=6.6
Q ss_pred CCCCCCchhh
Q psy9160 2 STPAASAPEL 11 (297)
Q Consensus 2 ~~~~~~~~~~ 11 (297)
.||.-.|||+
T Consensus 203 GTp~YmAPEv 212 (1021)
T PTZ00266 203 GTPYYWSPEL 212 (1021)
T ss_pred CCccccCHHH
Confidence 3566677885
No 19
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=51.50 E-value=6 Score=25.64 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=15.3
Q ss_pred CCCChHHHHHhchhHHHhcC
Q psy9160 51 GNSNPELAKYLDRSYWEQKK 70 (297)
Q Consensus 51 Eeeel~LA~aLs~se~e~~~ 70 (297)
|++++++|+.+|..+.+...
T Consensus 2 EDe~Lq~Ai~lSl~e~e~~~ 21 (26)
T smart00726 2 EDEDLQLALELSLQEAEESX 21 (26)
T ss_pred hHHHHHHHHHHhHHHhhhcc
Confidence 56788888888888877654
No 20
>smart00721 BAR BAR domain.
Probab=51.34 E-value=79 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=32.4
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD 216 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke 216 (297)
.|..+...+...-+.+-+.+...+.+|..|+....||..++.
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~ 162 (239)
T smart00721 121 FILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKK 162 (239)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666677778888888889999999888888876654
No 21
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=1.8e+02 Score=25.76 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=60.2
Q ss_pred HHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 157 VNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREA 236 (297)
Q Consensus 157 vNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~a 236 (297)
.+.+.+....|.|++.+..++. -|+.++..+=++.+.+...+.--|...+.+...+-.+.+++.|++.|...-+.++
T Consensus 50 ~q~~~~k~~~G~s~~q~~nyq~---fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~k~~e~L~er~~~e~~~~e 126 (148)
T COG2882 50 EQNLNEKLKSGVSAAQWQNYQQ---FISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEE 126 (148)
T ss_pred HHHHHHHHhccccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778888877755554 4666777777777777777777888888888999999999999999988776655
Q ss_pred HHHH
Q psy9160 237 QIAE 240 (297)
Q Consensus 237 eEae 240 (297)
.-.+
T Consensus 127 ~~~E 130 (148)
T COG2882 127 NRRE 130 (148)
T ss_pred hHHH
Confidence 4444
No 22
>PTZ00121 MAEBL; Provisional
Probab=49.83 E-value=5.3e+02 Score=31.37 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 210 KLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK 257 (297)
Q Consensus 210 KL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqK 257 (297)
...++-+||.+.++.|.||..++..+..-++--|...-+.+++..|+.
T Consensus 1210 E~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~ 1257 (2084)
T PTZ00121 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKF 1257 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777666553333323333334444455555543
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.49 E-value=3.7e+02 Score=29.06 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=40.6
Q ss_pred hhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHH
Q psy9160 176 VQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNA-LREEHNEKLRR 234 (297)
Q Consensus 176 VqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDa-LReeH~eklr~ 234 (297)
|+.|=+..-.|-.++....+.....|.-...|..||...+++|+.|++ |.+|-+.|+..
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333444444455566666666677777788888899999999999986 66666665554
No 24
>COG1895 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=46.80 E-value=28 Score=30.53 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=33.2
Q ss_pred CCCCChHHHhhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHhhh
Q psy9160 91 TGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMK 161 (297)
Q Consensus 91 ~s~~DPELARYLNRsYWEqr~~~e~~s~~spsap~~~t~~~~~p~~~~~~e~eef~~~l~sqVeiFvNRmk 161 (297)
++++|-++.+||||+|= .|...+-... -+...++-...+. -.++|++|++
T Consensus 73 ~g~~~~~~~~~~~~~~~-~R~t~dYg~~-------------------~e~t~eea~~~i~-~ae~F~~~~k 122 (129)
T COG1895 73 EGDLDKELGKFLNRAFS-LRHTADYGTT-------------------KEVTKEEAESIIS-KAEIFLDKAK 122 (129)
T ss_pred hchHHHHHHHHHHHHHH-HHHhhcccch-------------------hhhhHHHHHHHHH-HHHHHHHHHH
Confidence 67999999999999995 5665442110 1223333333444 7899999998
No 25
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=46.72 E-value=1.7e+02 Score=24.32 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAAL 221 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~AL 221 (297)
.+.-+..|..-..-..+++......|-+|. .......-|..+...+-.........+...|.-..+|..-.--+.+|
T Consensus 35 ~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~---~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ 111 (146)
T PRK07720 35 VAEKLYELLKQKEDLEQAKEEKLQSGLSIQ---EIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKY 111 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777777766776554 12222223344444444444444455555555556666666667777
Q ss_pred HHHHHHHHHHHHHHH
Q psy9160 222 NALREEHNEKLRREA 236 (297)
Q Consensus 222 DaLReeH~eklr~~a 236 (297)
+.|++.+...-+.++
T Consensus 112 ekLker~~~~~~~~e 126 (146)
T PRK07720 112 EKMKEKKQEMFALEE 126 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666554443
No 26
>KOG0742|consensus
Probab=45.52 E-value=2.3e+02 Score=30.23 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 187 HSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQR 266 (297)
Q Consensus 187 H~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQr 266 (297)
--+++..|..+|+-|. --++-|..++.-+-+-++. ++.|..+||+....|-|-. .|+..+.||-
T Consensus 94 aK~vfel~r~qE~Trq--~E~~~k~~~~eA~qa~~~~------er~r~~~Ee~rk~lq~qaq--------~k~q~arYqD 157 (630)
T KOG0742|consen 94 AKDVFELARMQEQTRQ--AEQQAKTKEYEAAQAQLKS------ERIRVQAEERRKTLQEETQ--------QKQQRARYQD 157 (630)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 3467777777766553 2344444444433333332 2334455555555444433 3444555555
Q ss_pred HHHHHHHH
Q psy9160 267 NLALQKIQ 274 (297)
Q Consensus 267 q~alqriQ 274 (297)
++|-+|.+
T Consensus 158 ~larkr~~ 165 (630)
T KOG0742|consen 158 KLARKRYE 165 (630)
T ss_pred HHHHHHHH
Confidence 55555554
No 27
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=44.53 E-value=2.8e+02 Score=26.24 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=61.9
Q ss_pred cccchhhhHHHhhh-------hhHHHHHHHHHHhhhhhhhhhhhHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy9160 171 ANDSSVQTLFVNIT-------TMHSRLLKYIQQKDDKRVYYEGLQDKLTQVK-DARAALNALREEHNEKLRREAQIAER- 241 (297)
Q Consensus 171 anDssVqtLF~~lt-------~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIk-eAR~ALDaLReeH~eklr~~aeEaeR- 241 (297)
..|+.|.+-|.+++ ++|..|++.++-.--.-. --=|.+.|-.+| |.+..+|-..+++..++-+-+.+...
T Consensus 56 ~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L-~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~ 134 (215)
T cd07641 56 RDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTL-DSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREH 134 (215)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44677777766655 555555555543321111 122568899999 99999999999999999887766642
Q ss_pred HHHH----------HHHHHHHHHHHH-HHHHHHHHHHH
Q psy9160 242 QKQI----------QMAHKLDLMRKK-KQEYLQYQRNL 268 (297)
Q Consensus 242 qrQm----------QmaqKLeiMRqK-KqEyL~yQrq~ 268 (297)
-|+. -++.=|+..|.= -+.++.|--+.
T Consensus 135 ~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqi 172 (215)
T cd07641 135 AKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKV 172 (215)
T ss_pred cCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3554 466667766653 24555555443
No 28
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.37 E-value=3.2e+02 Score=26.85 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.5
Q ss_pred chhhhHHHhhhhhHHHH
Q psy9160 174 SSVQTLFVNITTMHSRL 190 (297)
Q Consensus 174 ssVqtLF~~lt~MH~qL 190 (297)
+.|..|=..|..+..++
T Consensus 275 P~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 275 PDVIATKREIAQLEEQK 291 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 29
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=44.36 E-value=2.1e+02 Score=29.11 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 235 EAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQE 277 (297)
Q Consensus 235 ~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~alqriQeqe 277 (297)
++.|+||++|+-.+.=-+.=++|-+|-..-|+++-....+||.
T Consensus 96 q~aEqErlkQle~er~~a~e~qkq~eEa~kq~~~~qkqqeEqa 138 (387)
T COG3064 96 QAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138 (387)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777765543333333333344444444333333333
No 30
>KOG2002|consensus
Probab=43.30 E-value=5.4e+02 Score=29.49 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9160 245 IQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYM 292 (297)
Q Consensus 245 mQmaqKLeiMRqKKqEyL~yQrq~alqriQeqerEmqmr~eqQk~~y~ 292 (297)
++.+-|++.-|+.|. ++-+ .|..|.|+..+..++-|++.|.
T Consensus 838 ~~kq~~~~~a~~~~~--~ee~-----~r~~eee~~~r~~l~~qr~e~~ 878 (1018)
T KOG2002|consen 838 RAKQEKEEEALIEKE--LEEA-----RRKEEEEKARREKLEKQREEYR 878 (1018)
T ss_pred HHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555443 2222 2344556666666666666664
No 31
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=41.54 E-value=2.5e+02 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=33.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHh-HHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQ-VKDA 217 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~q-IkeA 217 (297)
+|..=...+....+.+-+.|...+.++..|+++++||.. +++.
T Consensus 97 ~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k 140 (216)
T cd07599 97 RVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKK 140 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 344444566677888899999999999999999999988 5543
No 32
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=40.75 E-value=6.7 Score=23.56 Aligned_cols=15 Identities=7% Similarity=-0.059 Sum_probs=9.2
Q ss_pred CCCChHHHHHhchhH
Q psy9160 51 GNSNPELAKYLDRSY 65 (297)
Q Consensus 51 Eeeel~LA~aLs~se 65 (297)
|++++++|+++|..+
T Consensus 3 Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 3 EDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcc
Confidence 445666667666654
No 33
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.30 E-value=5.3e+02 Score=27.95 Aligned_cols=84 Identities=15% Similarity=0.257 Sum_probs=40.4
Q ss_pred ccccchhhhHHHhhhhhHHHHHHHHHH---hhhhhhhh--hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 170 IANDSSVQTLFVNITTMHSRLLKYIQQ---KDDKRVYY--EGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQ 244 (297)
Q Consensus 170 IanDssVqtLF~~lt~MH~qLL~~i~~---~ee~R~~~--E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQ 244 (297)
...+.+.+-|.+.+..+|.+-+.+.+. .-++|... ...++.|..+.+.+.-.+.|+ +..++|..+-+ .-..+|
T Consensus 532 p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~-~~ae~LaeR~e-~a~d~Q 609 (717)
T PF10168_consen 532 PSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR-ESAEKLAERYE-EAKDKQ 609 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHH
Confidence 345667778888888888753333221 11222110 112233334444444445553 44555554332 333455
Q ss_pred HHHHHHHHHHH
Q psy9160 245 IQMAHKLDLMR 255 (297)
Q Consensus 245 mQmaqKLeiMR 255 (297)
=.+.++++.|.
T Consensus 610 e~L~~R~~~vl 620 (717)
T PF10168_consen 610 EKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHH
Confidence 56666666443
No 34
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=38.96 E-value=2e+02 Score=27.35 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q psy9160 140 TELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD 216 (297)
Q Consensus 140 ~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke 216 (297)
..++.++..|+.+++.|.++|. .+|...+.-+..|-..|..+.+....++.|......+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~----------------~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLE----------------ESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTS 62 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4678889999999999998886 457777777777777777777766666666665555444
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.40 E-value=2.2e+02 Score=27.15 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=47.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLM 254 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiM 254 (297)
-|..+...|..-|..|..-+..+...-...+. -| -..+..+|+.|..+..+=.++.+.-++-..... .+..+++.+
T Consensus 174 ~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-~D-~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~--~l~~~i~~~ 249 (325)
T PF08317_consen 174 QLDELLPKLRERKAELEEELENLKQLVEEIES-CD-QEELEALRQELAEQKEEIEAKKKELAELQEELE--ELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34556666666666666666655554333221 11 144555666666665555444444333333322 355677888
Q ss_pred HHHHHHHHHHHH
Q psy9160 255 RKKKQEYLQYQR 266 (297)
Q Consensus 255 RqKKqEyL~yQr 266 (297)
..+|++.+.--.
T Consensus 250 ~~~k~~l~~eI~ 261 (325)
T PF08317_consen 250 EEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 36
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.81 E-value=3e+02 Score=24.57 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 185 TMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQ 244 (297)
Q Consensus 185 ~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQ 244 (297)
-|.--++..|...=+.|. ..+.+.|+....++.-.+.++.++++.|+..-.|+.+.++
T Consensus 26 ll~kf~~ppI~~iLe~R~--~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~ 83 (155)
T PRK06569 26 FVYKFITPKAEEIFNNRQ--TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKK 83 (155)
T ss_pred HHHHHhHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665 4588999999999999999999999998888777776544
No 37
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=34.81 E-value=2.6e+02 Score=26.78 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 214 VKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRR 283 (297)
Q Consensus 214 IkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~alqriQeqerEmqmr 283 (297)
-.|++.-.+..|++-.+++...+.++.+. ..| +.|-+.-|+++.+.+.----....++.|.|++.++|
T Consensus 253 ~~e~~~K~~k~R~~~~~~~~K~~~~~r~E-~~~-~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~kk~~r 320 (321)
T PF07946_consen 253 SPEAKKKAKKNREEEEEKILKEAHQERQE-EAQ-EKKEEKKREERERKLSKLSPEEQRKYEEKERKKEQR 320 (321)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 34666666777777666665544332222 111 122333333333333332122235666666666655
No 38
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=34.40 E-value=6.4e+02 Score=28.74 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy9160 226 EEHNEKLRREAQIAE 240 (297)
Q Consensus 226 eeH~eklr~~aeEae 240 (297)
+|+.+++.++.+|.|
T Consensus 473 rer~er~erer~Ere 487 (1021)
T PTZ00266 473 RERMERIERERLERE 487 (1021)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344333333333
No 39
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=34.08 E-value=88 Score=27.36 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q psy9160 140 TELDDFIRALKSQVEIFVNRMKSN 163 (297)
Q Consensus 140 ~e~eef~~~l~sqVeiFvNRmkSN 163 (297)
...++|+...+..++.|.||+-++
T Consensus 101 ~~~~E~~~~rr~~LqrfL~RV~~h 124 (140)
T cd06891 101 SNNEEDARKLKANLQRWFNRVCSD 124 (140)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344589999999999999999877
No 40
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.22 E-value=4.1e+02 Score=24.81 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 202 VYYEGLQDKLTQVKDARAALNALREEHNE-KLRREAQIAERQKQIQMAHKLDLMRKK 257 (297)
Q Consensus 202 ~~~E~LQDKL~qIkeAR~ALDaLReeH~e-klr~~aeEaeRqrQmQmaqKLeiMRqK 257 (297)
.-.+.|.+-+..|+..|..|+.+++.-.. -+..-+--..|++=..+..+|..|+.=
T Consensus 71 el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v 127 (291)
T PF10475_consen 71 ELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTV 127 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788889999999999999999776 777777777777777888888888653
No 41
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.20 E-value=62 Score=22.51 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=12.8
Q ss_pred HHHhhhhhhhhhhhHHHHHhHHHH
Q psy9160 194 IQQKDDKRVYYEGLQDKLTQVKDA 217 (297)
Q Consensus 194 i~~~ee~R~~~E~LQDKL~qIkeA 217 (297)
|.+.|..|.--|.|..||.|++.+
T Consensus 7 ~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 7 ISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444555555666666666666654
No 42
>KOG1087|consensus
Probab=32.47 E-value=1.2e+02 Score=31.41 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhh--HHHHHhHHHH
Q psy9160 140 TELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGL--QDKLTQVKDA 217 (297)
Q Consensus 140 ~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~L--QDKL~qIkeA 217 (297)
.....-++.++..|++|-+=+-.+......=.-|.-+.+|+.....|+.+||++|.+..|.=..+++| .|.|.+|=..
T Consensus 191 ~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~rv~~Li~~~~DE~ll~~lL~lND~L~~vL~~ 270 (470)
T KOG1087|consen 191 TLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRRVMHLIEETSDEELLCELLKLNDELQRVLER 270 (470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH
Confidence 33445678888889998888887777777777788999999999999999999999999988888876 4777766443
No 43
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=31.50 E-value=5e+02 Score=25.34 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 190 LLKYIQQKDDKRVYYEGLQDKLTQVKDARA--ALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRN 267 (297)
Q Consensus 190 LL~~i~~~ee~R~~~E~LQDKL~qIkeAR~--ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq 267 (297)
+|..|..+|+-| .--++.|..+..-+.+ -++..|-++.++.+-...+++ +.+..-..+-++=|+.-+.-+..||.
T Consensus 53 afel~k~QE~Tk--Q~E~~ak~~e~ea~~~q~~~e~~rv~~EE~Rkt~~~q~q-~~~q~aqY~D~LaRkR~~~e~~~qr~ 129 (276)
T PF12037_consen 53 AFELMKKQEETK--QAELQAKIAEYEAAQAQAEIERQRVEAEERRKTLQQQTQ-QKQQRAQYEDELARKRYQDELEQQRR 129 (276)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666676666655 2333444433332222 234444444444433333222 22223344455556666666666655
Q ss_pred HH
Q psy9160 268 LA 269 (297)
Q Consensus 268 ~a 269 (297)
..
T Consensus 130 ~n 131 (276)
T PF12037_consen 130 RN 131 (276)
T ss_pred HH
Confidence 53
No 44
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=31.47 E-value=6.6e+02 Score=26.67 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHH
Q psy9160 147 RALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYI 194 (297)
Q Consensus 147 ~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i 194 (297)
..++..++.=.+++..=..+...+.-+...+.+...++.++.++...-
T Consensus 277 ~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 277 PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433444444444445666667777776665543
No 45
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=31.13 E-value=1.6e+02 Score=22.15 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=41.3
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRRE 235 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~ 235 (297)
.+..+...+..+|-.|...|..- ...-+.+..-+..|.+++..+...|.+|...+...
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~---~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAP---PPDEAAIEALLEEIREAQAELRQERLEHLLEIRAV 117 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCS---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567777788888777776532 44455677777788889999999998888776543
No 46
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.79 E-value=5.9e+02 Score=25.65 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=58.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Q psy9160 182 NITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQK--------------QIQM 247 (297)
Q Consensus 182 ~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqr--------------QmQm 247 (297)
-+--+.--+.+-|...=+.|. +.+.+.|....+++.-++.++.+|..++.....|+.... --+.
T Consensus 14 l~~lL~kfl~~Pi~~~l~~R~--~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A 91 (445)
T PRK13428 14 IVFLVWRFVVPPVRRLMAARQ--DTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQA 91 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555554 347888888889999999999998888776554443322 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 248 AHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQ 281 (297)
Q Consensus 248 aqKLeiMRqKKqEyL~yQrq~alqriQeqerEmq 281 (297)
....+-|..+.++.++..++.++..++.+=-.+.
T Consensus 92 ~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lA 125 (445)
T PRK13428 92 DAEAERIKVQGARQVQLLRAQLTRQLRLELGHES 125 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666665444443
No 47
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.52 E-value=1.5e+02 Score=20.62 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 233 RREAQIAERQKQIQMAHKLDLMRK 256 (297)
Q Consensus 233 r~~aeEaeRqrQmQmaqKLeiMRq 256 (297)
-..+.|+=|-|.-|+.+||+-||-
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777788899999998873
No 48
>PRK11637 AmiB activator; Provisional
Probab=29.10 E-value=5.6e+02 Score=25.13 Aligned_cols=92 Identities=10% Similarity=0.210 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhh--hhhH--HHHHHHHHHhhhhhhhhhhhHHHHHhH
Q psy9160 139 DTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNI--TTMH--SRLLKYIQQKDDKRVYYEGLQDKLTQV 214 (297)
Q Consensus 139 ~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~l--t~MH--~qLL~~i~~~ee~R~~~E~LQDKL~qI 214 (297)
+.++.+.-..+...-+.|..|+++.-..|.. . .+.-||..= ..+. ..+|.+|.+. .+.+++.+.+...++
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~-~---~l~vLl~a~~~~~~~r~~~~l~~i~~~--d~~~l~~l~~~~~~L 182 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQGEH-T---GLQLILSGEESQRGERILAYFGYLNQA--RQETIAELKQTREEL 182 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c---HHHHHhcCCChhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4556666677777777888889888887752 1 232233211 1122 1233444433 566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9160 215 KDARAALNALREEHNEKLRREA 236 (297)
Q Consensus 215 keAR~ALDaLReeH~eklr~~a 236 (297)
.+.+.+|+.-+.+=...+....
T Consensus 183 ~~~k~~le~~~~~l~~~~~e~~ 204 (428)
T PRK11637 183 AAQKAELEEKQSQQKTLLYEQQ 204 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777655555444443333
No 49
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.42 E-value=3.9e+02 Score=23.04 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=64.0
Q ss_pred hhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q psy9160 176 VQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQI---------- 245 (297)
Q Consensus 176 VqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQm---------- 245 (297)
|-+|+.-+.-+---+-+.|...=+.|. +.+.+.|....+++...+.+..+++.+|.....|+...+.-
T Consensus 26 iinflIl~~lL~~fl~kpI~~~l~~R~--~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~ 103 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKILEERR--EAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRA 103 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666665 34889999999999999999999988887766655443221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 246 ----QMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQ 281 (297)
Q Consensus 246 ----QmaqKLeiMRqKKqEyL~yQrq~alqriQeqerEmq 281 (297)
+.....+-++.+.++-+...++-|+..+..+=-.+.
T Consensus 104 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la 143 (174)
T PRK07352 104 EIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELA 143 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334445555555555555555555554433333
No 50
>PHA02109 hypothetical protein
Probab=27.84 E-value=1.8e+02 Score=27.38 Aligned_cols=56 Identities=32% Similarity=0.433 Sum_probs=41.5
Q ss_pred HHHHHhhhhh--hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 192 KYIQQKDDKR--VYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263 (297)
Q Consensus 192 ~~i~~~ee~R--~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~ 263 (297)
..|+++++.- ...|||-|||.+|-+--.-||+|-+|- -|+..||.-.|+--..||-
T Consensus 171 E~ID~~~~~~t~~~L~~~~~~L~~I~~L~~ki~~LS~E~----------------~Q~~~Ki~N~R~~Vk~~LS 228 (233)
T PHA02109 171 ERIDQVERSHTGENLEGLTDKLKQISELTIKLEALSDEA----------------CQVKHKILNLRAEVKRRLS 228 (233)
T ss_pred HHHHHHHhccchhhhhhhhHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Confidence 3455555432 357999999999999999999997653 4678888888877666653
No 51
>KOG0978|consensus
Probab=27.71 E-value=6.7e+02 Score=27.59 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=74.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCccc----ccchhhhHHHhhhhhHHH-HHHHHHHhhhhhhhhhhhHHHHHh
Q psy9160 139 DTELDDFIRALKSQVEIFVNRMKSNSSRGRSIA----NDSSVQTLFVNITTMHSR-LLKYIQQKDDKRVYYEGLQDKLTQ 213 (297)
Q Consensus 139 ~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIa----nDssVqtLF~~lt~MH~q-LL~~i~~~ee~R~~~E~LQDKL~q 213 (297)
-..+++-+.+|+++++.|.-+++-+-.++|..+ ++..=.++|...-.||.. .+.+-+..++.+...+..+-+|.+
T Consensus 505 k~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 505 KSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999998888877654 233334455555556654 456667788888888888888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 214 VKDARAALNALREEHNEKLRREAQIAERQKQ 244 (297)
Q Consensus 214 IkeAR~ALDaLReeH~eklr~~aeEaeRqrQ 244 (297)
|++-=+++..=.+.-.-+.++.++|-++++.
T Consensus 585 i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 585 IQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765555544444445566777778777764
No 52
>PF06222 Phage_TAC: Phage tail assembly chaperone; InterPro: IPR010411 This entry is represented by Bacteriophage HK97, Gp13 and Gp14. These are two overlapping reading frames []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These proteins include several putative tail assembly chaperones encoded by phages of Gram-negative bacteria.; PDB: 2OB9_A.
Probab=27.29 E-value=1.3e+02 Score=26.44 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=39.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHH
Q psy9160 138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQ 196 (297)
Q Consensus 138 ~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~ 196 (297)
...--++|..+++..|..|+.=+=.-- |-++.+|.-....-.---.-|.+||+.-=+
T Consensus 60 ~ls~~ek~~Rn~~Adv~LFidVL~dE~--~~rVFsd~D~~~V~~~YGPVHaRLl~qALe 116 (127)
T PF06222_consen 60 ELSVREKAQRNLRADVVLFIDVLLDED--GQRVFSDDDAEQVAAIYGPVHARLLRQALE 116 (127)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHEE-TT--S-BSS-GGGHHHHHCC--HHHHHHHHHHHT
T ss_pred cccHHHHHHHhhhcchhhhhHHHhcCC--CCcccCcchHHHHHHHhchHHHHHHHHHHH
Confidence 445667999999999999998775443 338888888888777778899999976433
No 53
>KOG0250|consensus
Probab=26.95 E-value=1e+03 Score=27.55 Aligned_cols=129 Identities=18% Similarity=0.312 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcccc---cchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH----HH
Q psy9160 146 IRALKSQVEIFVNRMKSNSSRGRSIAN---DSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD----AR 218 (297)
Q Consensus 146 ~~~l~sqVeiFvNRmkSNs~RGRsIan---DssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke----AR 218 (297)
+..|...++.-.++|+-+-..=....| +..+. -..|..++..+++..++.++...-.|.+++++.+|.. ..
T Consensus 698 ~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~--~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~ 775 (1074)
T KOG0250|consen 698 LRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVD--ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELE 775 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555444333333333 22221 1467788999999999999999999999999988764 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy9160 219 AALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLA--LQKIQEQEYEMQ 281 (297)
Q Consensus 219 ~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKqEyL~yQrq~a--lqriQeqerEmq 281 (297)
...++.|+--+..+.+-....+-+ --.++-||-.|.+...|.--+- |.-+-+.|+++-
T Consensus 776 ~~~~~~~~~l~~e~~~l~~l~~el-----~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~ 835 (1074)
T KOG0250|consen 776 EYYAAGREKLQGEISKLDALKEEL-----KLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKV 835 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 334444333222222222222221 2334556666666666665554 555555555543
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=26.47 E-value=4e+02 Score=22.60 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----
Q psy9160 180 FVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQK-------QIQM----- 247 (297)
Q Consensus 180 F~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqr-------QmQm----- 247 (297)
+.-+--++--|.+-|...=+.|.. .+.+.|....+++.-...+..++..++.....|+.... .-..
T Consensus 19 lil~~ll~~~l~~pi~~~l~~R~~--~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~ 96 (164)
T PRK14471 19 LILLLLLAKFAWKPILGAVKERED--SIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKE 96 (164)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666665555653 47889999999999999999999988876666533221 1111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 248 --AHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEM 280 (297)
Q Consensus 248 --aqKLeiMRqKKqEyL~yQrq~alqriQeqerEm 280 (297)
....+.+..+-+.-+...++-|+..++.+=-.+
T Consensus 97 ~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~l 131 (164)
T PRK14471 97 EAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555566666666666655443333
No 55
>PTZ00121 MAEBL; Provisional
Probab=26.37 E-value=6.3e+02 Score=30.80 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 214 VKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQ 259 (297)
Q Consensus 214 IkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqKKq 259 (297)
+-+||.|=| .|.+-..+.++++.+++.+|+-.-+.+-+.+|+.-.
T Consensus 1130 ~eeARrae~-~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEe 1174 (2084)
T PTZ00121 1130 AEEARKAED-ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174 (2084)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555533 334444445555555555555555555555554333
No 56
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=26.34 E-value=33 Score=30.58 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=12.9
Q ss_pred CCCCChHHHhhhhhHHH
Q psy9160 91 TGNSNPELAKYLDRSYW 107 (297)
Q Consensus 91 ~s~~DPELARYLNRsYW 107 (297)
++=.|||+|.|||++|=
T Consensus 58 esf~d~eVa~~lN~~FI 74 (163)
T PF03190_consen 58 ESFSDPEVAEYLNRNFI 74 (163)
T ss_dssp HTTT-HHHHHHHHHH-E
T ss_pred cCcCCHHHHHHHhCCEE
Confidence 45789999999999993
No 57
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.09 E-value=5e+02 Score=23.53 Aligned_cols=54 Identities=13% Similarity=0.397 Sum_probs=38.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhh-hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9160 179 LFVNITTMHSRLLKYIQQKDDKRV-YYEGLQDKLTQVKDARAALNALREEHNEKLRR 234 (297)
Q Consensus 179 LF~~lt~MH~qLL~~i~~~ee~R~-~~E~LQDKL~qIkeAR~ALDaLReeH~eklr~ 234 (297)
.+..|.+.|..|++.++..--... .| +...|..+||+|.-+|..-++|...+-+
T Consensus 69 ~l~el~~~~~~L~~q~~~~i~~pL~~F--~k~dL~~vKE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 69 ALQEMNNFHTILLDQAQRTVSTQLQNF--VKEDIKKVKESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888877765433331 12 4578889999999999999999887765
No 58
>PRK10972 Z-ring-associated protein; Provisional
Probab=25.33 E-value=2.7e+02 Score=23.52 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHH
Q psy9160 147 RALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKY 193 (297)
Q Consensus 147 ~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~ 193 (297)
..|...+..+++||+....+|+.+..|- -+++.--++=-.||..
T Consensus 25 ~~L~~AA~~Ld~km~~ir~~~kv~~~Er---iavmaALNl~~ELl~~ 68 (109)
T PRK10972 25 DALNQAAEDLNQRLQDLKERTRVTNTEQ---LVFIAALNICYELAQE 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHHHHHHH
Confidence 6788889999999999999999888774 3444444444445543
No 59
>KOG0811|consensus
Probab=25.29 E-value=6.3e+02 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9160 138 SDTELDDFIRALKSQVEIFVNRMKSNSS 165 (297)
Q Consensus 138 ~~~e~eef~~~l~sqVeiFvNRmkSNs~ 165 (297)
-..++-.|+..++.+|-.+...+.++.+
T Consensus 22 l~~~i~~~i~~i~~~~~~l~r~~~~lgt 49 (269)
T KOG0811|consen 22 LAQEIAANIQRINQQVLSLLRFLNSLGT 49 (269)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 4567778888888888888888887744
No 60
>KOG2072|consensus
Probab=25.17 E-value=1.1e+03 Score=27.09 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=31.0
Q ss_pred chhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q psy9160 174 SSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDK 210 (297)
Q Consensus 174 ssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDK 210 (297)
..|-+..-++-.+|-++|.+-.-.++++.++|.++-+
T Consensus 550 ~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~ 586 (988)
T KOG2072|consen 550 GAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVE 586 (988)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566777788899999999999999999999888543
No 61
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=24.94 E-value=2.4e+02 Score=21.86 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 212 TQVKDARAALNALREEHNEKLRREAQIAERQKQ 244 (297)
Q Consensus 212 ~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQ 244 (297)
.+|+.+...+.-|.++|..=|.---+|-+++++
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~ 35 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQK 35 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999888888888775
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.74 E-value=5.4e+02 Score=23.53 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcccccc-----hhhhHHHhhhhhHHHHHHHHHHhhhhhh-----hhhhhHHHHHhHH
Q psy9160 146 IRALKSQVEIFVNRMKSNSSRGRSIANDS-----SVQTLFVNITTMHSRLLKYIQQKDDKRV-----YYEGLQDKLTQVK 215 (297)
Q Consensus 146 ~~~l~sqVeiFvNRmkSNs~RGRsIanDs-----sVqtLF~~lt~MH~qLL~~i~~~ee~R~-----~~E~LQDKL~qIk 215 (297)
+.+|...++.+..+...++.+|-.+.+++ ..+.|...|..+|..+-..+.+....-. .-+.|+. ..+
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~---~l~ 130 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR---ALA 130 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH---HHH
Confidence 67777778888888888888887777665 3456666666666665555555543322 1222222 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 216 DARAALNALREEHNEKLRREAQIAE 240 (297)
Q Consensus 216 eAR~ALDaLReeH~eklr~~aeEae 240 (297)
+|+.=|..||..+=...++.|+.+-
T Consensus 131 ea~~mL~emr~r~f~~~~~~Ae~El 155 (264)
T PF06008_consen 131 EAQRMLEEMRKRDFTPQRQNAEDEL 155 (264)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHH
Confidence 6777777777766555555554443
No 63
>PF09658 Cas_Csx9: CRISPR-associated protein (Cas_Csx9); InterPro: IPR013488 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Cxs9 family of Cas proteins found in archaea. These proteins are encoded in the midst of a cas gene operon [].
Probab=24.19 E-value=1.8e+02 Score=29.24 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=40.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhhccC-CCc--------------ccccchhhhHHHhhhhhHHHHHH
Q psy9160 137 ASDTELDDFIRALKSQVEIFVNRMKSNSSR-GRS--------------IANDSSVQTLFVNITTMHSRLLK 192 (297)
Q Consensus 137 ~~~~e~eef~~~l~sqVeiFvNRmkSNs~R-GRs--------------IanDssVqtLF~~lt~MH~qLL~ 192 (297)
+.++..++|.++|...++.|-.|++-|++| ||+ |..|.++-.||..+-.=-..||+
T Consensus 9 g~epd~~~laeale~~~dslesR~~i~ssKlsrndRnsfdkv~~~wF~i~~peTy~elFelvI~etikLL~ 79 (377)
T PF09658_consen 9 GLEPDEEELAEALENAMDSLESRKKINSSKLSRNDRNSFDKVLNAWFGISAPETYGELFELVIKETIKLLR 79 (377)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhhhcCcccccccchhhHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999999999988875 332 44556666666666554444443
No 64
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.53 E-value=7.9e+02 Score=24.96 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred cccchh--hhHHHhhhhhHHHHHHHHHHhhhhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 171 ANDSSV--QTLFVNITTMHSRLLKYIQQKDDKRVYYE-GLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQM 247 (297)
Q Consensus 171 anDssV--qtLF~~lt~MH~qLL~~i~~~ee~R~~~E-~LQDKL~qIkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQm 247 (297)
.++..+ ..+=..|...|..+-..-.++.+.+...+ .+...|..-++ ..++.++.+...++.+...+.+..-.-.+
T Consensus 239 ~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~--e~~~~~~~~~~~~le~~~~~~~~~~~~e~ 316 (582)
T PF09731_consen 239 INEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE--ELLSKLREELEQELEEKRAELEEELREEF 316 (582)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 248 AHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQ 286 (297)
Q Consensus 248 aqKLeiMRqKKqEyL~yQrq~alqriQeqerEmqmr~eq 286 (297)
..+..-++++..+-|.-+....-+-+.+.-+++-..+..
T Consensus 317 ~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~ 355 (582)
T PF09731_consen 317 EREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAI 355 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 65
>KOG3284|consensus
Probab=23.50 E-value=77 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccc
Q psy9160 138 SDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDS 174 (297)
Q Consensus 138 ~~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDs 174 (297)
.-+.+++||+..|=.--.=+.||+ +||||+--.
T Consensus 76 ~f~SiE~Fc~kyrl~cp~Ai~Ri~----~~~piT~e~ 108 (213)
T KOG3284|consen 76 EFPSIEDFCKKYRLDCPAAIERIR----EGRPITVED 108 (213)
T ss_pred ccCcHHHHHHHHccCChHHHHHHH----cCCCCcccc
Confidence 457899999999988888889999 899997654
No 66
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.50 E-value=4.2e+02 Score=21.77 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q psy9160 145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDK 210 (297)
Q Consensus 145 f~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDK 210 (297)
=+..++++++... +++-.|=.+--.+|.+|..+|+-..+-|..|..-+++
T Consensus 27 E~~~ins~LD~Ln----------------s~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 27 EYAAINSMLDQLN----------------SCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566777766543 4455666777789999999999999999988766554
No 67
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.38 E-value=9.8e+02 Score=26.04 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHH
Q psy9160 184 TTMHSRLLKYIQQKDDKRVYYEGLQD 209 (297)
Q Consensus 184 t~MH~qLL~~i~~~ee~R~~~E~LQD 209 (297)
+..+..+=..|.++++.|..+|...+
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~ 532 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNE 532 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655555544333
No 68
>KOG2002|consensus
Probab=22.91 E-value=1.2e+03 Score=26.90 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=45.2
Q ss_pred CCChHHHhhhhhHHHHhhhcCCCCCCCCCC---CCCCCCCCC--------------CCCCCCCchhHHHHHHHHHHHHHH
Q psy9160 93 NSNPELAKYLDRSYWEQKKYGTHGSHYSTD---HHMNHTSGV--------------TSPDEASDTELDDFIRALKSQVEI 155 (297)
Q Consensus 93 ~~DPELARYLNRsYWEqr~~~e~~s~~sps---ap~~~t~~~--------------~~p~~~~~~e~eef~~~l~sqVei 155 (297)
..|+++--||-|-|.+--...+......+- .|-.++.-+ ..|+ -..+++..-+.-|+..+.+
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHH
Confidence 568999999999988766553321110000 111111110 0112 2456777788888999999
Q ss_pred HHHhhhhhccCCCccc
Q psy9160 156 FVNRMKSNSSRGRSIA 171 (297)
Q Consensus 156 FvNRmkSNs~RGRsIa 171 (297)
|- -|..|.-++.|+.
T Consensus 792 F~-~ls~~~d~r~~~~ 806 (1018)
T KOG2002|consen 792 FT-ELSKNGDKRISKT 806 (1018)
T ss_pred HH-HHHhcCCCCCCHH
Confidence 85 5777877766654
No 69
>KOG0979|consensus
Probab=22.38 E-value=1.2e+03 Score=27.17 Aligned_cols=128 Identities=23% Similarity=0.386 Sum_probs=76.5
Q ss_pred CchhHHHHHHHHHHHHHH---HHHhhhhhccCCCcccccchhhhHHHhhhhh-HHHHHHHHHHhhhhhhhhhhhHHHHHh
Q psy9160 138 SDTELDDFIRALKSQVEI---FVNRMKSNSSRGRSIANDSSVQTLFVNITTM-HSRLLKYIQQKDDKRVYYEGLQDKLTQ 213 (297)
Q Consensus 138 ~~~e~eef~~~l~sqVei---FvNRmkSNs~RGRsIanDssVqtLF~~lt~M-H~qLL~~i~~~ee~R~~~E~LQDKL~q 213 (297)
+..++.+|+..++=||.- |...= |=-.++-=+.|.-|-.|.-+. |+.||.|..++.|.|..-.+|+++++.
T Consensus 125 t~s~i~elv~~fNIQi~NLCqFLpQD-----kV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~ 199 (1072)
T KOG0979|consen 125 TKSEIEELVAHFNIQIDNLCQFLPQD-----KVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTT 199 (1072)
T ss_pred hhHHHHHHHHHHhcccCchhhhccHH-----HHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888877653 32211 111344446667777776655 677999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q psy9160 214 VKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKK---------KQEYLQYQRNLALQKIQEQEY 278 (297)
Q Consensus 214 IkeAR~ALDaLReeH~eklr~~aeEaeRqrQmQmaqKLeiMRqK---------KqEyL~yQrq~alqriQeqer 278 (297)
-.+ +|.-|+++-.+-.+-=+.--+|++ ..-|+++|++| +.||-+|- .+..|+-++.|
T Consensus 200 ~~~---~l~~L~~~~~~l~kdVE~~rer~~---~~~~Ie~l~~k~~~v~y~~~~~ey~~~k--~~~~r~k~~~r 265 (1072)
T KOG0979|consen 200 KTE---KLNRLEDEIDKLEKDVERVRERER---KKSKIELLEKKKKWVEYKKHDREYNAYK--QAKDRAKKELR 265 (1072)
T ss_pred hHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccchHhhhHHHHHHH--HHHHHHHHHHH
Confidence 665 455555544433332222223322 23456666544 45665554 33344444443
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.11 E-value=90 Score=32.09 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=18.6
Q ss_pred CCcccCCCCChHHHhhhhhHHHHhh
Q psy9160 86 HQEEDTGNSNPELAKYLDRSYWEQK 110 (297)
Q Consensus 86 p~~e~~s~~DPELARYLNRsYWEqr 110 (297)
.++++..-...||++|||||--|.+
T Consensus 358 ~~~~~s~~~~ae~~ky~~~n~~e~~ 382 (493)
T COG5236 358 RQDTASPSTEAELPKYLNRNILEEE 382 (493)
T ss_pred CCCccCchhhhHhHHHHHhhhhHHH
Confidence 3334444677899999999998874
No 71
>KOG2884|consensus
Probab=21.59 E-value=48 Score=31.91 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=19.9
Q ss_pred cccCCCChHHHHHhchhHHHhcCC
Q psy9160 48 EDTGNSNPELAKYLDRSYWEQKKV 71 (297)
Q Consensus 48 e~~Eeeel~LA~aLs~se~e~~~~ 71 (297)
-..+|.+|+||+||--|-.|+|++
T Consensus 210 gvdp~~DPELAlALRlSMEEer~r 233 (259)
T KOG2884|consen 210 GVDPEDDPELALALRLSMEEERAR 233 (259)
T ss_pred CCCcccCHHHHHHHHhhHHHHHHH
Confidence 455678999999998888888877
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.73 E-value=1e+03 Score=25.13 Aligned_cols=58 Identities=19% Similarity=0.360 Sum_probs=40.5
Q ss_pred hhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH-HHHHHHHHHHHHHHHH
Q psy9160 175 SVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD-ARAALNALREEHNEKL 232 (297)
Q Consensus 175 sVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke-AR~ALDaLReeH~ekl 232 (297)
+|-||--.+..|+.+|-..+.+.+..+..=|.|+.+...|.. -..||+.-|.+-....
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~ 118 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEI 118 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHH
Confidence 455666667788888889999999988888888777666643 2456666555544433
No 73
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=20.63 E-value=92 Score=27.37 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYI 194 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i 194 (297)
+++..-+..|+..+..+..++ .-|.||.++..|+..+..++..|++++
T Consensus 152 e~~~~ri~~Q~~~~~k~~~ad----~vI~N~g~~e~l~~~v~~~~~~~~~~~ 199 (200)
T PRK14734 152 DDARRRIAAQIPDDVRLKAAD----IVVDNNGTREQLLAQVDGLIAEILSRV 199 (200)
T ss_pred HHHHHHHHhcCCHHHHHHhCC----EEEECcCCHHHHHHHHHHHHHHHHhcc
Confidence 556666666666655544433 479999999999999999999998875
No 74
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=20.61 E-value=3.8e+02 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=35.8
Q ss_pred chhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHH
Q psy9160 174 SSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDA 217 (297)
Q Consensus 174 ssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeA 217 (297)
.+|-.=...+..+.+-+-+.|.+.+.++..|++++.|+..+.+-
T Consensus 95 ~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K 138 (224)
T cd07591 95 QTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDK 138 (224)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhc
Confidence 34444556777888889999999999999999999999988654
No 75
>PF13868 Trichoplein: Tumour suppressor, Mitostatin
Probab=20.22 E-value=7.1e+02 Score=23.23 Aligned_cols=73 Identities=26% Similarity=0.347 Sum_probs=47.0
Q ss_pred HHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHH-----HHHHHH-HHHH----------HHHHHHHHHHHHHHHHH
Q psy9160 193 YIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHN-----EKLRRE-AQIA----------ERQKQIQMAHKLDLMRK 256 (297)
Q Consensus 193 ~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~-----eklr~~-aeEa----------eRqrQmQmaqKLeiMRq 256 (297)
......++..++..|-+.+....+.+..+|.||.+-. .+.+.. ..++ -.-|+.||..|...-..
T Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~del~~~~~~ee~e~k~~~~e~~~~ekr~~~~~ev~~~r~~Qi~~K~~~~~~ 252 (350)
T PF13868_consen 173 KREKREEKERYRERLAEQLEKEKDEREELDELRAELAEEEWERKEREKEREEAEKRRRLMQEVMEAREQQIQEKEQRREE 252 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778899999999999999999999987652 222111 1111 12245667777776666
Q ss_pred HHHHHHHHH
Q psy9160 257 KKQEYLQYQ 265 (297)
Q Consensus 257 KKqEyL~yQ 265 (297)
.+.+...+.
T Consensus 253 e~~e~~~~~ 261 (350)
T PF13868_consen 253 EKEEEREER 261 (350)
T ss_pred HHHHHHHHH
Confidence 666665554
Done!