Query psy9160
Match_columns 297
No_of_seqs 44 out of 46
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 20:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f1i_H Hepatocyte growth facto 100.0 5.5E-50 1.9E-54 322.5 10.5 98 141-238 1-98 (98)
2 2d3g_P Ubiquitin interacting m 97.3 5.8E-05 2E-09 48.4 0.7 23 49-71 1-23 (26)
3 2pjw_H Uncharacterized protein 97.1 0.0018 6.3E-08 51.1 7.8 75 149-226 8-84 (88)
4 2pjw_V Vacuolar protein sortin 96.4 0.0075 2.6E-07 47.9 6.9 64 156-224 17-80 (91)
5 1wrd_A TOM1, target of MYB pro 90.4 0.44 1.5E-05 37.7 5.4 77 140-216 9-87 (103)
6 1wr6_A ADP-ribosylation factor 86.8 1.1 3.8E-05 36.1 5.6 69 146-214 10-81 (111)
7 1oxz_A ADP-ribosylation factor 85.5 3 0.0001 36.5 8.0 70 145-215 77-151 (186)
8 1naf_A ADP-ribosylation factor 84.8 3.3 0.00011 35.4 7.8 71 145-216 61-136 (158)
9 1o3x_A ADP-ribosylation factor 83.5 2.8 9.6E-05 35.0 6.7 70 145-215 52-126 (140)
10 1uru_A Amphiphysin; endocytosi 78.0 21 0.00073 29.8 10.3 60 145-216 98-157 (244)
11 1q0v_A Hydrophilic protein; ha 70.4 2.1 7.3E-05 33.5 2.1 55 49-105 9-65 (81)
12 4a3a_A Amphiphysin; structural 61.7 67 0.0023 28.1 10.3 64 141-216 95-158 (243)
13 3ajw_A Flagellar FLIJ protein; 61.7 55 0.0019 25.4 12.3 87 148-237 44-130 (150)
14 2fic_A Bridging integrator 1; 61.6 74 0.0025 26.9 14.6 68 139-218 107-174 (251)
15 1f5n_A Interferon-induced guan 51.2 2E+02 0.0068 28.7 17.6 42 228-269 490-532 (592)
16 1by1_A Protein (PIX); RHO-GTPa 46.8 57 0.002 26.8 7.0 50 142-196 25-77 (209)
17 2p22_C Protein SRN2; endosome, 46.3 1.4E+02 0.0047 25.9 9.6 32 131-162 29-63 (192)
18 3mpx_A FYVE, rhogef and PH dom 42.2 35 0.0012 31.0 5.4 55 143-197 35-96 (434)
19 3oja_B Anopheles plasmodium-re 41.4 2.3E+02 0.0077 26.5 13.5 11 140-150 399-409 (597)
20 2q12_A DIP13 alpha, DCC-intera 37.8 1.9E+02 0.0065 24.7 12.1 62 171-232 77-144 (265)
21 3p6a_A RHO guanine nucleotide 36.7 32 0.0011 30.5 4.2 50 142-196 39-91 (377)
22 4avm_A Bridging integrator 2; 35.0 2.2E+02 0.0076 24.5 10.6 54 151-216 100-153 (237)
23 3odw_A RHO guanine nucleotide 34.0 37 0.0013 32.7 4.4 49 143-196 193-244 (536)
24 2z0q_A XPLN, RHO guanine nucle 31.8 71 0.0024 28.1 5.5 50 143-197 32-84 (346)
25 2pz1_A RHO guanine nucleotide 30.6 51 0.0018 30.4 4.6 50 143-196 131-183 (466)
26 2dfk_A Collybistin II; DH doma 29.1 57 0.002 29.8 4.6 51 143-197 54-107 (402)
27 1dbh_A Protein (human SOS 1); 28.8 60 0.002 28.7 4.5 51 142-196 15-68 (354)
28 3ky9_A Proto-oncogene VAV; cal 27.9 84 0.0029 30.3 5.7 49 142-197 209-260 (587)
29 2vrw_B P95VAV, VAV1, proto-onc 26.6 88 0.003 28.3 5.3 48 143-197 38-88 (406)
30 3jv3_A Intersectin-1; SH3 doma 26.6 87 0.003 26.5 5.0 50 143-197 95-147 (283)
31 1a93_A Coiled coil, LZ, MYC pr 25.8 84 0.0029 21.0 3.7 26 230-255 9-34 (34)
32 1xcg_A PDZ-rhogef, RHO guanine 25.0 89 0.003 27.6 5.0 54 143-201 34-87 (368)
33 3t06_A PDZ-rhogef, RHO guanine 24.9 89 0.003 28.2 5.0 54 143-201 76-129 (418)
34 1txd_A RHO guanine nucleotide 24.8 84 0.0029 28.1 4.8 51 143-199 37-87 (385)
35 1hul_A Interleukin-5; cytokine 24.6 47 0.0016 27.2 2.8 47 160-212 51-97 (108)
36 3mq7_A Bone marrow stromal ant 24.5 3.1E+02 0.011 22.9 8.0 55 171-231 50-104 (121)
37 1foe_A T-lymphoma invasion and 23.5 1.1E+02 0.0036 27.4 5.2 49 143-196 24-75 (377)
38 3ghg_A Fibrinogen alpha chain; 22.4 3.8E+02 0.013 27.3 9.3 17 140-156 60-76 (562)
39 2idx_A COB(I)yrinic acid A,C-d 21.0 36 0.0012 29.7 1.6 13 92-104 149-161 (196)
40 3dyn_A High affinity CGMP-spec 20.8 73 0.0025 29.5 3.7 41 174-214 282-323 (329)
No 1
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-50 Score=322.48 Aligned_cols=98 Identities=59% Similarity=0.916 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHH
Q psy9160 141 ELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAA 220 (297)
Q Consensus 141 e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~A 220 (297)
++++||++|++||++|+||||||++|||||+||+||||||++||+|||+||+||+++||+|+|||+|||||+||+|||+|
T Consensus 1 ~~~ef~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~A 80 (98)
T 3f1i_H 1 SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA 80 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9160 221 LNALREEHNEKLRREAQI 238 (297)
Q Consensus 221 LDaLReeH~eklr~~aeE 238 (297)
||+||+||++|+|+++||
T Consensus 81 LdaLR~eH~~Klrr~aee 98 (98)
T 3f1i_H 81 LSALREEHREKLRRAAEE 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999875
No 2
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=97.27 E-value=5.8e-05 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.127 Sum_probs=20.6
Q ss_pred ccCCCChHHHHHhchhHHHhcCC
Q psy9160 49 DTGNSNPELAKYLDRSYWEQKKV 71 (297)
Q Consensus 49 ~~Eeeel~LA~aLs~se~e~~~~ 71 (297)
++||||++||+|||+||+|++++
T Consensus 1 L~EeEEl~LAlAlS~sEae~~~~ 23 (26)
T 2d3g_P 1 LQEEEELQLALALSQSEAEEKXX 23 (26)
T ss_pred CchHHHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999999875
No 3
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0018 Score=51.13 Aligned_cols=75 Identities=15% Similarity=0.331 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhhhhccCC-C-cccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHH
Q psy9160 149 LKSQVEIFVNRMKSNSSRG-R-SIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALRE 226 (297)
Q Consensus 149 l~sqVeiFvNRmkSNs~RG-R-sIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLRe 226 (297)
=...|+.++++|+..+..| - -|..|+.|+.||..++++-|+|-+.|.+--.|+..+-.|.+||. .|+...|.|-+
T Consensus 8 q~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk~eL~~Ln~kl~---~a~~~Yd~lle 84 (88)
T 2pjw_H 8 QKTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEKEDMLSLRQVLA---NAERSYNQLMD 84 (88)
T ss_dssp THHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3456999999999998766 3 89999999999999999999999999999999999999999988 56777777755
No 4
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0075 Score=47.85 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=54.4
Q ss_pred HHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHH
Q psy9160 156 FVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNAL 224 (297)
Q Consensus 156 FvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaL 224 (297)
.|+||+.- .+..|..|+.||.||.+++.+-|+|.+.|.+--.|...|-.+.+||.. |+.-.|.|
T Consensus 17 lv~~~k~~--~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~---a~rlYD~l 80 (91)
T 2pjw_V 17 LVEKMKSR--PLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE---IMNIYDRL 80 (91)
T ss_dssp HHHHHHTC--SCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHhC--CcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 35788866 688999999999999999999999999999999999888888888875 44555544
No 5
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=90.39 E-value=0.44 Score=37.74 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhh--HHHHHhHHH
Q psy9160 140 TELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGL--QDKLTQVKD 216 (297)
Q Consensus 140 ~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~L--QDKL~qIke 216 (297)
.....-+..++..|++|..-+.+..-.+..-..|..++.||.++-.|||+|+++|...++.-.-++.| .|.|.++=.
T Consensus 9 ~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~vl~ 87 (103)
T 1wrd_A 9 GKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNVFL 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHHHHH
Confidence 34456678889999998776665434344456778999999999999999999998777666555544 466665543
No 6
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=86.80 E-value=1.1 Score=36.11 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhh---hhhhhhhhHHHHHhH
Q psy9160 146 IRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDD---KRVYYEGLQDKLTQV 214 (297)
Q Consensus 146 ~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee---~R~~~E~LQDKL~qI 214 (297)
+..++.-|.+|-.-+.+...-|.+...+..++.||.++-.|||+|.+.|.+..| .=...=.+.|.|+++
T Consensus 10 Le~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~v 81 (111)
T 1wr6_A 10 LEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRV 81 (111)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHH
Confidence 456777788876666655544444677789999999999999999999977632 222233445555554
No 7
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=85.47 E-value=3 Score=36.45 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHhh-hhhhhhh--hhHHHHHhHH
Q psy9160 145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQKD-DKRVYYE--GLQDKLTQVK 215 (297)
Q Consensus 145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~e-e~R~~~E--~LQDKL~qIk 215 (297)
-+..++..|++|..-+. +...|-+.. .|..++.||.++-.||++|.+.|.+.. +--.-+| .+.|.|+++=
T Consensus 77 eLe~V~~nv~LL~EML~-~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl 151 (186)
T 1oxz_A 77 AIEEVNNNVKLLTEMVM-SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVI 151 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-HTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHH
Confidence 44566667777655444 445555544 789999999999999999999998753 3333444 3456666653
No 8
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=84.77 E-value=3.3 Score=35.36 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHh-hhhhhhhh--hhHHHHHhHHH
Q psy9160 145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQK-DDKRVYYE--GLQDKLTQVKD 216 (297)
Q Consensus 145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~-ee~R~~~E--~LQDKL~qIke 216 (297)
-+..++..|++|..-+. +...|-+.. .|..++.||.++-.|+|+|.+.|.+. |+--.-+| .+.|.|+++=.
T Consensus 61 eLe~V~~nv~LL~EML~-~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~ 136 (158)
T 1naf_A 61 AIEEVNNNVKLLTEMVM-SHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVIN 136 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHH
Confidence 45666777777755444 444555443 78999999999999999999999875 33334444 34566666543
No 9
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=83.50 E-value=2.8 Score=34.98 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCccc--ccchhhhHHHhhhhhHHHHHHHHHHh-hhhhhhhhh--hHHHHHhHH
Q psy9160 145 FIRALKSQVEIFVNRMKSNSSRGRSIA--NDSSVQTLFVNITTMHSRLLKYIQQK-DDKRVYYEG--LQDKLTQVK 215 (297)
Q Consensus 145 f~~~l~sqVeiFvNRmkSNs~RGRsIa--nDssVqtLF~~lt~MH~qLL~~i~~~-ee~R~~~E~--LQDKL~qIk 215 (297)
-+..++..|++|-. |=++...|-+.. ++..++.||.++..|||+|.+.|.+. ++--.-++. +.|.|+++=
T Consensus 52 eLe~v~~n~~LL~E-ML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~~ND~ln~vl 126 (140)
T 1o3x_A 52 AIEEVNNNVKLLTE-MVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVI 126 (140)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHH
Confidence 45566777777654 445556666665 58899999999999999999999775 333344443 456666653
No 10
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=77.97 E-value=21 Score=29.76 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q psy9160 145 FIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD 216 (297)
Q Consensus 145 f~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke 216 (297)
+...+.....-|.+++..+ |-.=..++..+.+-+-+.|...+.+|..|+..+.+|..+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~------------vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~ 157 (244)
T 1uru_A 98 QTGASESLWADFAHKLGDQ------------VLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQA 157 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTT------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444566655522 33333444478888999999999999999999998888764
No 11
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=70.37 E-value=2.1 Score=33.52 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=27.3
Q ss_pred ccCCCChHHHHHhchhHHHhcCCCCCCCCCCCC-CCCCC-CcccCCCCChHHHhhhhhH
Q psy9160 49 DTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQ-SGYHH-QEEDTGNSNPELAKYLDRS 105 (297)
Q Consensus 49 ~~Eeeel~LA~aLs~se~e~~~~sps~~~~~~~-~~~~p-~~e~~s~~DPELARYLNRs 105 (297)
..++++|..|+.||--| .+...++.++.|.. ++..| ....+.|.||+|..=+--|
T Consensus 9 ~~eDeDLkrAieLSL~E--s~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaAS 65 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKE--SRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQES 65 (81)
T ss_dssp SSHHHHHHHHHHHHHHC--CCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHH--HcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Confidence 34556777777777665 33332222322221 11111 1121248899998866533
No 12
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=61.73 E-value=67 Score=28.14 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q psy9160 141 ELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD 216 (297)
Q Consensus 141 e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke 216 (297)
+...+.......++-|..++- |..+.+ -..+..+.+-+=+.|...+++...|++.+.++..+++
T Consensus 95 ~~~~~~~~~~~l~~d~~~~l~-----------d~~l~P-l~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~~kL~~ 158 (243)
T 4a3a_A 95 DVKMVGEKCDVLWEDFHQKLV-----------DGSLLT-LDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQS 158 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HTHHHH-HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHH-----------HHHHHH-HHHHHHHChHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 344455555555666666652 333444 3556677888889999999999999999999977765
No 13
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=61.66 E-value=55 Score=25.44 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHH
Q psy9160 148 ALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREE 227 (297)
Q Consensus 148 ~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLRee 227 (297)
.|.....-..+++....+.|-++. .+..+-.-|..+...+-..-..+...+...+..+..|..-.--+.+++.|++.
T Consensus 44 ~L~~~~~~y~~~~~~~~~~g~~~~---~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 44 MLIDYQNEYRSNLNTDMGNGIASN---RWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHTCC--CCSGGGHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443322 23333334455555555555556666667777777777777778888888887
Q ss_pred HHHHHHHHHH
Q psy9160 228 HNEKLRREAQ 237 (297)
Q Consensus 228 H~eklr~~ae 237 (297)
+..+.+.++.
T Consensus 121 ~~~~~~~~~~ 130 (150)
T 3ajw_A 121 QTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 14
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=61.61 E-value=74 Score=26.93 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHH
Q psy9160 139 DTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDAR 218 (297)
Q Consensus 139 ~~e~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR 218 (297)
.+....+...+...+.-|...+. +. |-.=...+..+.+-+-+.|...+.+|..|+....+|..+++..
T Consensus 107 ~~~~~~~~~~~~~~~~d~~~~l~-----------~~-vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~ 174 (251)
T 2fic_A 107 RDEANKIAENNDLLWMDYHQKLV-----------DQ-ALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAK 174 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HH-THHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555666777767777766544 22 3333444557888899999999999999999999998887654
No 15
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.18 E-value=2e+02 Score=28.68 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy9160 228 HNEKLRREAQIAERQKQIQMAHKLDL-MRKKKQEYLQYQRNLA 269 (297)
Q Consensus 228 H~eklr~~aeEaeRqrQmQmaqKLei-MRqKKqEyL~yQrq~a 269 (297)
..++.+.++.|++...=.+++.+++. |-+++..|.+.-+||.
T Consensus 490 ~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~ 532 (592)
T 1f5n_A 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 532 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444445555554 4455556655555543
No 16
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=46.79 E-value=57 Score=26.83 Aligned_cols=50 Identities=8% Similarity=0.354 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQ 196 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~ 196 (297)
...+|+.|+.-++.|..-|+.. .+.++..+.+||-+|. .+|..+|..++.
T Consensus 25 E~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~ 77 (209)
T 1by1_A 25 ENEYSKELQTVLSTYLRPLQTS-----EKLSSANISYLMGNLEEICSFQQMLVQSLEE 77 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-----SSSSSSGGGTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-----CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999853 3566677899998765 456666665544
No 17
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=46.33 E-value=1.4e+02 Score=25.94 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=23.3
Q ss_pred CCCCCC---CCchhHHHHHHHHHHHHHHHHHhhhh
Q psy9160 131 VTSPDE---ASDTELDDFIRALKSQVEIFVNRMKS 162 (297)
Q Consensus 131 ~~~p~~---~~~~e~eef~~~l~sqVeiFvNRmkS 162 (297)
++.|++ -...++.+|+++-++.++-||..+.+
T Consensus 29 ~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~ 63 (192)
T 2p22_C 29 IPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNP 63 (192)
T ss_dssp CCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSC
T ss_pred CCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchh
Confidence 455644 35677888888888889988877754
No 18
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=42.19 E-value=35 Score=30.97 Aligned_cols=55 Identities=11% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhh----ccCCCcccccchhhhHHHhhh---hhHHHHHHHHHHh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSN----SSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQK 197 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSN----s~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~~ 197 (297)
..||+.|+.-++.|...|... ...|+++.....+..||-+|. .+|..+|..+...
T Consensus 35 ~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~ 96 (434)
T 3mpx_A 35 KAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEER 96 (434)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 478899999999999887643 456778888889999998765 5577777766654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.45 E-value=2.3e+02 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q psy9160 140 TELDDFIRALK 150 (297)
Q Consensus 140 ~e~eef~~~l~ 150 (297)
+-...++..+.
T Consensus 399 ~~~~~~~~~l~ 409 (597)
T 3oja_B 399 PYLDRLLQYIA 409 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhHHHHHhh
Confidence 33444444433
No 20
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=37.83 E-value=1.9e+02 Score=24.67 Aligned_cols=62 Identities=6% Similarity=0.154 Sum_probs=37.3
Q ss_pred cccchhhhHHHhhhhhHHHHHHHHHHhhh--hhhhhhhhH----HHHHhHHHHHHHHHHHHHHHHHHH
Q psy9160 171 ANDSSVQTLFVNITTMHSRLLKYIQQKDD--KRVYYEGLQ----DKLTQVKDARAALNALREEHNEKL 232 (297)
Q Consensus 171 anDssVqtLF~~lt~MH~qLL~~i~~~ee--~R~~~E~LQ----DKL~qIkeAR~ALDaLReeH~ekl 232 (297)
.+|..|.+.|..++.....+..+...+-. .+..-+-|+ ..|..++|+|..+|..+.+|..-+
T Consensus 77 ~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al 144 (265)
T 2q12_A 77 GDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAI 144 (265)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888777766666555544444333322 112233333 678899999999999999998433
No 21
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=36.67 E-value=32 Score=30.48 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhh---hhhHHHHHHHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNI---TTMHSRLLKYIQQ 196 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~l---t~MH~qLL~~i~~ 196 (297)
...+|+.|+.-++.|...|+.. .+..+..+..||-+| -.+|..+|..+.+
T Consensus 39 E~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~ 91 (377)
T 3p6a_A 39 EAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEVHSLFLDRLMK 91 (377)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH-----TSSCHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc-----CCCCHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999864 566677889999775 4567777766654
No 22
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=34.95 E-value=2.2e+02 Score=24.55 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHH
Q psy9160 151 SQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKD 216 (297)
Q Consensus 151 sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIke 216 (297)
...+-|..+|. |..|.+| ..+..+.+-+-+.|...+.+...|++...++..+++
T Consensus 100 ~l~~~~~~~l~-----------~~vi~Pl-~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~ 153 (237)
T 4avm_A 100 LLWEDYEEKLA-----------DQAVRTM-EIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQN 153 (237)
T ss_dssp HHHHHHHHHHC-----------CCCCHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----------HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666653 2233443 466677888889999999999999999999887755
No 23
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=34.04 E-value=37 Score=32.72 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQ 196 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~ 196 (297)
..||+.|+--+++|...|+.. .+..+..|..||-+|. .+|..+|..+.+
T Consensus 193 ~~YV~~L~~l~~~y~~pl~~~-----~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~ 244 (536)
T 3odw_A 193 AAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSLDELIEVHSLFLDRLMK 244 (536)
T ss_dssp HHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 468899999999999999863 5667778899997764 567777766654
No 24
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=31.78 E-value=71 Score=28.08 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhh---hhhHHHHHHHHHHh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNI---TTMHSRLLKYIQQK 197 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~l---t~MH~qLL~~i~~~ 197 (297)
..||+.|+.-++.|...|+.. +|.....+..||-+| -..|..+|..+.+.
T Consensus 32 ~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~ 84 (346)
T 2z0q_A 32 EDLIEDLKLAKKAYHDPMLKL-----SIMTEQELNQIFGTLDSLIPLHEELLSQLRDV 84 (346)
T ss_dssp HHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999874 466667889999765 56678877666553
No 25
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=30.56 E-value=51 Score=30.40 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhh---hhhHHHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNI---TTMHSRLLKYIQQ 196 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~l---t~MH~qLL~~i~~ 196 (297)
..||+.|+.-++.|..-++.+ ..|.++..+..||-+| -.+|..+|..+++
T Consensus 131 ~~Yv~~L~~l~~~y~~~l~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~ 183 (466)
T 2pz1_A 131 RDYIKHLRDICEGYVRQCRKR----ADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQ 183 (466)
T ss_dssp HHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC----cCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 468999999999999988742 3566778889999654 5667887776655
No 26
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=29.08 E-value=57 Score=29.76 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhh---hhhHHHHHHHHHHh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNI---TTMHSRLLKYIQQK 197 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~l---t~MH~qLL~~i~~~ 197 (297)
..||+.|+.-++.|..-++.+ .+|.+...+..||-+| -.+|..+|..++..
T Consensus 54 ~~Yv~~L~~l~~~y~~pl~~~----~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~ 107 (402)
T 2dfk_A 54 RHYIKHLKDICEGYLKQCRKR----RDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQ 107 (402)
T ss_dssp HHHHHHHHHHHHHTHHHHHHC----TTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC----cCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988753 3466677889999665 45677877766543
No 27
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=28.85 E-value=60 Score=28.66 Aligned_cols=51 Identities=25% Similarity=0.493 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHH
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQ 196 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~ 196 (297)
...+|+.|+.-++.|...|+++. .|.+...|..||-+|. ..|..+|..++.
T Consensus 15 E~~Yv~~L~~l~~~y~~~l~~~~----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~ 68 (354)
T 1dbh_A 15 IRQYIRELNLIIKVFREPFVSNS----KLFSANDVENIFSRIVDIHELSVKLLGHIED 68 (354)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHCT----TTCCHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998742 3667788999997654 567777776663
No 28
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=27.93 E-value=84 Score=30.28 Aligned_cols=49 Identities=18% Similarity=0.449 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHHh
Q psy9160 142 LDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQK 197 (297)
Q Consensus 142 ~eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~~ 197 (297)
...||+.|+.-++.|...|+. +.+...+..||-+|. ..|..+|..+...
T Consensus 209 E~~Yv~~L~~l~~~y~~~L~~-------~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~ 260 (587)
T 3ky9_A 209 EEKYTDTLGSIQQHFLKPLQR-------FLKPQDIEIIFINIEDLLRVHTHFLKEMKEA 260 (587)
T ss_dssp HHHHHHHHHHHHHHTHHHHHT-------TSCTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999984 556667899998765 4588877766553
No 29
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.65 E-value=88 Score=28.27 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHHh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQK 197 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~~ 197 (297)
..||+.|+.-++.|...|+. +.....+..||-+|. .+|..+|..+.+.
T Consensus 38 ~~Yv~~L~~l~~~f~~~l~~-------~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~ 88 (406)
T 2vrw_B 38 EKYTDTLGSIQQHFMKPLQR-------FLKPQDMETIFVNIEELFSVHTHFLKELKDA 88 (406)
T ss_dssp HHHHHHHHHHHHHTHHHHTT-------TSCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999973 455667899997654 5678877766653
No 30
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=26.65 E-value=87 Score=26.45 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHHh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQK 197 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~~ 197 (297)
..||+.|+.-+++|..-|+.. .+.++..+.+||-+|. ..|..+|..+...
T Consensus 95 ~~Yv~~L~~l~~~y~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~ 147 (283)
T 3jv3_A 95 ENYVNDLQLVTEIFQKPLTES-----ELLTEKEVAMIFVNWKELIMCNIKLLKALRVR 147 (283)
T ss_dssp HHHHHHHHHHHHHTTHHHHTT-----CSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc-----CCCCHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 468889999999999988753 4667778899997764 5677777776543
No 31
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=25.76 E-value=84 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9160 230 EKLRREAQIAERQKQIQMAHKLDLMR 255 (297)
Q Consensus 230 eklr~~aeEaeRqrQmQmaqKLeiMR 255 (297)
|..-.-+.|..+-|+-|+-+||+-+|
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455667888889999999988653
No 32
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=25.03 E-value=89 Score=27.61 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKR 201 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R 201 (297)
..||+.|+.-++.|...|+.. .|.+...+..||-+|..++.-=-..+..+++.+
T Consensus 34 ~~Yv~~L~~l~~~f~~~l~~~-----~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~ 87 (368)
T 1xcg_A 34 ASHLRTLRVLDLIFYQRMKKE-----NLMPREELARLFPNLPELIEIHNSWCEAMKKLR 87 (368)
T ss_dssp HHHHHHHHHHHHHTHHHHHHT-----TSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
No 33
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=24.91 E-value=89 Score=28.23 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKR 201 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R 201 (297)
..||+.|+.-+++|...|+. ..+..+..+..||-+|..++.-=-..+..+++.+
T Consensus 76 ~~Yv~~L~~l~~~y~~~l~~-----~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~ 129 (418)
T 3t06_A 76 ASHLRTLRVLDLIFYQRMKK-----ENLMPREELARLFPNLPELIEIHNSWCEAMKKLR 129 (418)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-----TTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHhh-----cCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHH
No 34
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=24.81 E-value=84 Score=28.11 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhh
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDD 199 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee 199 (297)
..||+.|+.-++.|...|+. ..|.+...+.+||-+|..++.-= ..+.++++
T Consensus 37 ~~Yv~~L~~l~~~f~~~l~~-----~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~ 87 (385)
T 1txd_A 37 RAHVRTLKVLDQVFYQRVSR-----EGILSPSELRKIFSNLEDILQLH-IGLNEQMK 87 (385)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-----HTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----cCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHH
No 35
>1hul_A Interleukin-5; cytokine; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qt2_C* 3b5k_A
Probab=24.64 E-value=47 Score=27.23 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=34.4
Q ss_pred hhhhccCCCcccccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q psy9160 160 MKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLT 212 (297)
Q Consensus 160 mkSNs~RGRsIanDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~ 212 (297)
+|++-.+| .+|-.||++|+.+-+.+=..-.+-++.|.--+.+-|+|.
T Consensus 51 LkNqt~~g------~~v~klFQNlsliK~~Id~QkkkCg~ER~rVkqFldyLq 97 (108)
T 1hul_A 51 LESQTVQG------GTVERLFKNLSLIKKYIDGQKKKCGEERRRVNQFLDYLQ 97 (108)
T ss_dssp HHTTSCCS------STHHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHH
T ss_pred HhcCcchh------hHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45554444 567899999999888777777777777777777777664
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.52 E-value=3.1e+02 Score=22.88 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=35.1
Q ss_pred cccchhhhHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9160 171 ANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEK 231 (297)
Q Consensus 171 anDssVqtLF~~lt~MH~qLL~~i~~~ee~R~~~E~LQDKL~qIkeAR~ALDaLReeH~ek 231 (297)
+...+|-+|-.+|...-.+-.+.+++++ +..+.|.. +++||-+.+..||.++.+-
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLq---gEI~~Lnq---~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELE---GEITTLNH---KLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHhhchhh
Confidence 3446778888888888887755554443 33333333 3467777788888777643
No 37
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=23.53 E-value=1.1e+02 Score=27.39 Aligned_cols=49 Identities=16% Similarity=0.451 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcccccchhhhHHHhhh---hhHHHHHHHHHH
Q psy9160 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNIT---TMHSRLLKYIQQ 196 (297)
Q Consensus 143 eef~~~l~sqVeiFvNRmkSNs~RGRsIanDssVqtLF~~lt---~MH~qLL~~i~~ 196 (297)
..||+.|+.-++.|...|+.. ++.+...+..||-+|. .+|..+|..+..
T Consensus 24 ~~Yv~~L~~l~~~y~~pl~~~-----~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~ 75 (377)
T 1foe_A 24 RTYVKDLNCLMERYLKPLQKE-----TFLTQDELDVLFGNLTEMVEFQVEFLKTLED 75 (377)
T ss_dssp HHHHHHHHHHHHHTHHHHHTS-----SSSCHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999863 4566678899997655 567777766654
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.39 E-value=3.8e+02 Score=27.34 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy9160 140 TELDDFIRALKSQVEIF 156 (297)
Q Consensus 140 ~e~eef~~~l~sqVeiF 156 (297)
..+..-|+.||.+|+-+
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 33444555566666554
No 39
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=21.04 E-value=36 Score=29.65 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=11.9
Q ss_pred CCCChHHHhhhhh
Q psy9160 92 GNSNPELAKYLDR 104 (297)
Q Consensus 92 s~~DPELARYLNR 104 (297)
.++||++.+||||
T Consensus 149 ~~v~~~~~~yLNR 161 (196)
T 2idx_A 149 GETDANVAKFLNR 161 (196)
T ss_dssp TSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3799999999999
No 40
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=20.81 E-value=73 Score=29.53 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=33.5
Q ss_pred chhhhHHHhhhhhHHHHHH-HHHHhhhhhhhhhhhHHHHHhH
Q psy9160 174 SSVQTLFVNITTMHSRLLK-YIQQKDDKRVYYEGLQDKLTQV 214 (297)
Q Consensus 174 ssVqtLF~~lt~MH~qLL~-~i~~~ee~R~~~E~LQDKL~qI 214 (297)
.-|..||..++.+.|.+-. .++.+.+-|.+|+.|.+.-...
T Consensus 282 ~iv~Pl~~~l~~~~P~~~~~~l~~L~~Nr~~w~~l~~~~~~~ 323 (329)
T 3dyn_A 282 FVLIPMFETVTKLFPMVEEIMLQPLWESRDRYEELKRIDDAM 323 (329)
T ss_dssp HTHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999875 5688999999998887655433
Done!