RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9160
(297 letters)
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS,
ESCRT, ubiquitin, MVB, endosome, membrane, metal-
phosphoprotein, protein transport, transport; 2.30A
{Homo sapiens}
Length = 98
Score = 128 bits (324), Expect = 6e-38
Identities = 58/95 (61%), Positives = 76/95 (80%)
Query: 143 DDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRV 202
+ F++AL++ V FVNRMKSN RGRSI NDS+V +LF +I MH +LL+ + Q D++R+
Sbjct: 3 EQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRL 62
Query: 203 YYEGLQDKLTQVKDARAALNALREEHNEKLRREAQ 237
YYEGLQDKL Q++DAR AL+ALREEH EKLRR A+
Sbjct: 63 YYEGLQDKLAQIRDARGALSALREEHREKLRRAAE 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 5e-07
Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 65/321 (20%)
Query: 11 LSSLFDKNRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKY-LDRS--YWE 67
+ + N ++M + P Y Q + N N AKY + R Y +
Sbjct: 83 VEEVLRINYK--FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 68 QKK----VPPNHG-SHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYG------THG 116
++ + P G G +G + +A + SY Q K
Sbjct: 140 LRQALLELRPAKNVLIDGVLG-------SGKTW--VALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 117 SHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVE--------IFVNRMKSNS---- 164
+ S + + + + + T D +K ++ + ++ N
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 165 --SRGRSIAN--DSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAA 220
+ N + S + L +TT ++ ++ + + LT +
Sbjct: 251 LNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 221 LNALREEHNEKLRREAQ---------IAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQ 271
L L + L RE IAE + + + L
Sbjct: 308 LKYLDCR-PQDLPREVLTTNPRRLSIIAESIRD---------GLATWDNWKHVNCD-KLT 356
Query: 272 KIQEQEYEMQRRQEQQKQYYM 292
I E + E +K +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR 377
Score = 40.6 bits (94), Expect = 5e-04
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 32/158 (20%)
Query: 115 HGSHYSTDHHMNHTSG-----------VTSPDEASD---TELDDFIRALKSQVEI-FVNR 159
H H HHM+ +G V + ++ D +++ S+ EI +
Sbjct: 1 HHHH----HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56
Query: 160 MKSNSSRGRSI------ANDSSVQTLFV------NITTMHSRLLKYIQQKDDKRVYYEGL 207
K S + + VQ FV N + S + +Q Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 208 QDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQI 245
+D+L A N R + KLR+ K +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Score = 40.2 bits (93), Expect = 8e-04
Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 62/197 (31%)
Query: 148 ALKSQVEIFVNRMKSNSSRGR----SIANDSSVQTLFVNITT------------------ 185
L + +E +N ++ R S+ S +I T
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTILLSLIWFDVIKSDVMVV 407
Query: 186 ---MHSR-LLKYIQQKDDKRVYYEGLQDKLTQVKDARAAL--------NALREEHNEKLR 233
+H L++ +Q + + + +L + AL N + ++ L
Sbjct: 408 VNKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 234 REAQ-------IAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQ-- 284
I K I+ ++ L R +L + R L QKI+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDF-RFLE-QKIRHDSTAWNASGSI 520
Query: 285 ----EQQKQY--YMQNN 295
+Q K Y Y+ +N
Sbjct: 521 LNTLQQLKFYKPYICDN 537
Score = 38.3 bits (88), Expect = 0.002
Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 73/238 (30%)
Query: 54 NPELAKYLDRSYWEQKKVPPNHGSHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYG 113
E + Y E K N + H H+ T +S+ + YLD Y+ Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYF----Y- 474
Query: 114 THGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIAND 173
SH HH+ E R +F++
Sbjct: 475 ---SHIG--HHL---------KNIEHPERMTLFR------MVFLD--------------- 499
Query: 174 SSVQTLFVNITTMHSRLLKYIQQK----DDKRVYYEGLQDKLTQVKDARAALNALREEHN 229
++++QK + + L Q+K + + +
Sbjct: 500 -----------------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDP 539
Query: 230 EKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQ 287
+ R I + +L+ K + L+ +AL E +E +Q Q+
Sbjct: 540 KYERLVNAI----LDFLPKIEENLICSKYTDLLR----IALMAEDEAIFEEAHKQVQR 589
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.5 bits (99), Expect = 5e-05
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 16/78 (20%)
Query: 219 AALNALREEHNEKLR--REAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQ 276
A + L +E E +R RE E++K++Q +LD K ++ + + A + ++E
Sbjct: 75 AQADRLTQEP-ESIRKWRE----EQRKRLQ---ELDAASKVMEQEWREK---AKKDLEEW 123
Query: 277 EYEMQRRQEQQKQYYMQN 294
+ R+ EQ ++ + N
Sbjct: 124 -NQ--RQSEQVEKNKINN 138
Score = 33.6 bits (76), Expect = 0.041
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 208 QDKLTQVKDA--RAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQ 265
Q K Q DA + RE+ + L E + +Q++ R + + Q Q
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDL--EEWNQRQSEQVEKNKIN--NRIADKAFYQ-Q 148
Query: 266 RN 267
+
Sbjct: 149 PD 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 42/289 (14%), Positives = 79/289 (27%), Gaps = 104/289 (35%)
Query: 1 MSTPAASAPELSSLFDK-NRSLAYIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAK 59
P S+LF A ++ +F G GQ GN++
Sbjct: 133 AKRPFDKKSN-SALFRAVGEGNAQLVAIF------G---GQ----------GNTDD---- 168
Query: 60 YLD--RSYWEQKKVPPNHGSHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGS 117
Y + R ++ YH D + E L R+ + +K T G
Sbjct: 169 YFEELRDLYQT---------------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG- 212
Query: 118 HYSTDHHMNHTSGVTSPDEASDTE----------------LDDFIRALKSQ---VEIFVN 158
+N + +P D + L ++ K +
Sbjct: 213 -------LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 159 RMKSNSSRGRS------IANDSSVQTLFVNITTMHSRLLKYI----QQKDDKRVYY---- 204
+K + + IA S ++ FV++ +L +I + Y
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGVRCYE------AYPNTS 318
Query: 205 ---EGLQDKLTQ----------VKD-ARAALNALREEHNEKLRREAQIA 239
L+D L + + + + + N L Q+
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 28.5 bits (63), Expect = 3.5
Identities = 38/303 (12%), Positives = 87/303 (28%), Gaps = 109/303 (35%)
Query: 9 PELSSLFDKNRSLA----YIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRS 64
L+ F + Y ++F+ + G E+ N Y
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVD--------GKLKTEKIFKEINEHSTSYT--- 1718
Query: 65 YWEQKKVPPNHGSHHGQSGYHHQEED---TGNSNP-----ELAKYLDRSYWEQKKYGTHG 116
+ ++ T + P E A + D + K
Sbjct: 1719 -------------------FRSEKGLLSATQFTQPALTLMEKAAFED---LKSKGLIPAD 1756
Query: 117 S----H----YSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGR 168
+ H Y+ + + V S + + + F R + QV V R + S
Sbjct: 1757 ATFAGHSLGEYAA---LASLADVMSIESLVEV-V--FYRGMTMQVA--VPRDELGRSNYG 1808
Query: 169 SIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEH 228
IA +N + + ++ AL + E
Sbjct: 1809 MIA---------INPGRVAASF--------------------------SQEALQYVVERV 1833
Query: 229 NEKLRREAQIA---ERQKQI----------QMAHKLDLMRKKKQEYLQYQRNLALQKIQE 275
++ +I +Q + + L+ ++ +K + ++ Q++L+L++++
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Query: 276 QEY 278
+
Sbjct: 1894 HLF 1896
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.0 bits (78), Expect = 0.059
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 189 RLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEH----NEKLRREAQI-AERQK 243
LLK +Q+++ + E LQ + + A A L L ++H EK + ++ AE +
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 244 QIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
+ + KKQE L+ + +I+E+E Q+ Q ++K+
Sbjct: 908 YAEAEEMRVRLAAKKQE-LEEILHEMEARIEEEEERSQQLQAEKKK 952
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/111 (14%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 183 ITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAER- 241
+ L + +++ + L+ K TQ+ + + L + E ++ R
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 242 -QKQIQMAHKL-DLMRKKKQEYLQYQR-NLALQKIQEQEYEMQRRQEQQKQ 289
K+ ++ L ++ + ++E + Q+ +K+Q+Q +++ + E+++
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Score = 29.4 bits (66), Expect = 1.6
Identities = 13/101 (12%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 188 SRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQM 247
+ L + +Q + + E ++ +L + L + E ++ E + +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAA---KKQELEEILHEMEARIEEEEE--------RS 943
Query: 248 AHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQK 288
+K +Q+ L + L ++ Q+ ++++ K
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Score = 27.5 bits (61), Expect = 6.8
Identities = 20/129 (15%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 171 ANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHN- 229
D ++ + +I M + K +++ L L + ++ L L+ +H
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 230 ---------EKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEM 280
+K + Q E+ K+ ++ + + ++ E LQ Q ++ ++E E+
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKR-KLEGESSDLHEQIAE-LQAQIAELKAQLAKKEEEL 1097
Query: 281 QRRQEQQKQ 289
Q + +
Sbjct: 1098 QAALARLED 1106
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 31.4 bits (71), Expect = 0.15
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 202 VYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEY 261
V L ++ Q L + +L+R + + + + K R K ++
Sbjct: 9 VNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKD 68
Query: 262 LQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
+ QR QK Q E + RR +++
Sbjct: 69 VMAQRQTFAQKAQAFEQDRARRSNEERG 96
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.5 bits (73), Expect = 0.16
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 3/146 (2%)
Query: 144 DFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVY 203
D +A+ S+V V + + S F + +D
Sbjct: 570 DACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFP 629
Query: 204 YEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263
GL V+ R+ ++ +I ++ H+ + ++ + L+
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689
Query: 264 YQRNLALQKIQEQEYEMQRRQEQQKQ 289
Q+ + E E + E +
Sbjct: 690 RQK---ILDQSEAEKARKELLELEAM 712
Score = 29.8 bits (66), Expect = 1.2
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 212 TQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQ 271
T ++A A A R E + R E Q Q + + + +K+ ++A++
Sbjct: 666 TNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE--------KARKELLELEAMSMAVE 717
Query: 272 KIQEQEYEMQRRQEQQK 288
+ E + R E +
Sbjct: 718 STGNAKAEAESRAEAAR 734
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 31.0 bits (70), Expect = 0.27
Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 215 KDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQ 274
++ A + AL +E K + AE + + + + + + + L+ +
Sbjct: 9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALR-------RAES 61
Query: 275 EQEYEMQRRQEQQKQYYMQN 294
E + + Q + ++
Sbjct: 62 AGELLVATARTQARGEVLEE 81
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.8 bits (71), Expect = 0.31
Identities = 17/91 (18%), Positives = 34/91 (37%)
Query: 204 YEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQ 263
Y KL +K + E L+ + E + L K+K+ ++
Sbjct: 433 YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVE 492
Query: 264 YQRNLALQKIQEQEYEMQRRQEQQKQYYMQN 294
+ + Q + +EMQR+ EQ + ++
Sbjct: 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERS 523
Score = 31.5 bits (70), Expect = 0.36
Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 1/162 (0%)
Query: 129 SGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTMHS 188
+G+ S + K E +++ + + S+ + +
Sbjct: 424 AGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLT 483
Query: 189 RLLKYIQQKDDKRVYYEGLQDKLTQ-VKDARAALNALREEHNEKLRREAQIAERQKQIQM 247
K I+ + K + L + + + + E L++ + E + +
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 543
Query: 248 AHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
+ + K QE Q + ++ + + E+Q Q + ++
Sbjct: 544 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.43
Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 210 KLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQ-MAHKLDLMRKKKQEYLQYQRNL 268
+L ++K ++ ++ H E +I + Q++I + + +K L+ +
Sbjct: 905 ELKKLKIEARSVERYKKLHIGL---ENKIMQLQRKIDEQNKEYKSLLEKMNN-LEITYST 960
Query: 269 ALQKIQEQEYEMQRRQEQQKQ 289
+K++ ++ +E+ K
Sbjct: 961 ETEKLRSDVERLRMSEEEAKN 981
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro
closure, subdomain, structural genomics, PSI; 2.50A
{Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Length = 224
Score = 29.9 bits (67), Expect = 0.73
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 127 HTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIAND 173
+ G+ P + +D EL +L V+I + ++ ND
Sbjct: 66 NRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCND 112
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function;
NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Length = 116
Score = 28.3 bits (63), Expect = 1.3
Identities = 4/43 (9%), Positives = 9/43 (20%)
Query: 247 MAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
M +L +R+ + L+
Sbjct: 1 MDPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVG 43
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.4 bits (67), Expect = 1.7
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 189 RLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMA 248
RL + L+ + + ++ L + +++RRE ++AERQ + A
Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL-DEVRREIELAERQYDLNRA 489
Query: 249 HKLDLMRKKKQEYLQYQRNLALQK-IQEQEYEMQ 281
+ L+Y L+ ++ +++
Sbjct: 490 AE-----------LRYGELPKLEAEVEALSEKLR 512
>1l8w_A VLSE1; variable surface protein, VMP-like sequence, immune system;
2.30A {Borrelia burgdorferi} SCOP: a.154.1.1
Length = 348
Score = 28.8 bits (63), Expect = 1.9
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 28/125 (22%)
Query: 116 GSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSS 175
GSH+ HH + +S V D+ ++ I+ +++F S G +A
Sbjct: 3 GSHH---HHHHGSSQVADKDDPTNKFYQSVIQLGNGFLDVFT-------SFGGLVAE--- 49
Query: 176 VQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRRE 235
+K D + Y+ + KL + K LN+L +E ++
Sbjct: 50 --AFGFKSDP----------KKSDVKTYFTTVAAKLEKTKT---DLNSLPKEKSDISSTT 94
Query: 236 AQIAE 240
+
Sbjct: 95 GKPDS 99
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein;
ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Length = 248
Score = 28.4 bits (63), Expect = 2.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 128 TSGVTSPDEASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIAND 173
+G+ P+ +D EL + +L V + K ++ +AND
Sbjct: 70 KNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVAND 115
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.4 bits (63), Expect = 2.8
Identities = 4/62 (6%), Positives = 12/62 (19%), Gaps = 6/62 (9%)
Query: 228 HNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQ 287
H+ + + K + +L + ++ Q
Sbjct: 2 HHHHHHSSGLVPRGSGMKE------TAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTV 55
Query: 288 KQ 289
Sbjct: 56 NW 57
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.6 bits (63), Expect = 2.9
Identities = 11/65 (16%), Positives = 24/65 (36%)
Query: 225 REEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQ 284
H E R A + + K ++ +R + K+++ E EM++
Sbjct: 283 NNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVF 342
Query: 285 EQQKQ 289
E + +
Sbjct: 343 EMKVK 347
Score = 27.1 bits (59), Expect = 8.2
Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 215 KDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNL--ALQK 272
K A + R EH K+++ E+ ++++ K+ ++ + E + + L+
Sbjct: 314 KSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEA 373
Query: 273 IQEQEYEMQRRQEQQKQYYMQ 293
++ E +R+ E +K +
Sbjct: 374 QHKELEEKRRQFEDEKANWEA 394
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 27.6 bits (61), Expect = 4.5
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 215 KDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQ 274
K+A + + E ++ + E ++ + + + R K Q L+ QR +A +++
Sbjct: 13 KEAERKIEYILNEARQQAEKI--KEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLE 70
Query: 275 EQEYEMQRRQE 285
+ + ++E
Sbjct: 71 VRRKRLAIQEE 81
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 27.8 bits (62), Expect = 5.0
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 136 EASDTELDDFIRALKSQVEIFVNRMKSNSSRGRSIANDSSVQTLFVNITTM---HSRLLK 192
E S E +D I LK + + + M SI + + +F + ++ H LL
Sbjct: 26 ELSQGE-EDLIEDLKLAKKAYHDPMLK-----LSIMTEQELNQIFGTLDSLIPLHEELLS 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.7
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 31/58 (53%)
Query: 97 ELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVE 154
L K L S K Y + D A L A+K+ +E
Sbjct: 21 ALKK-LQASL---KLY--------------------ADDSAP--AL-----AIKATME 47
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase;
1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A*
3ldr_A 3lih_A* 3lf7_A 3lfi_A*
Length = 634
Score = 27.5 bits (60), Expect = 6.7
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 101 YLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRAL--KSQVEIFVN 158
+DRS G T+ V + LD + + + VE++ N
Sbjct: 530 VVDRSQTSAAAPTNPGLDSFTESGKLRLFDVIENGQEQVETLD--LTVVVDNAVVEVYAN 587
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 27.4 bits (61), Expect = 7.0
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 77 SHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVT 132
SHH +HH ++K+ SY + K T+G ++ HH H +G +
Sbjct: 4 SHH----HHHHSSGLVPRGSHMSKF---SYLQNGKASTNGVPHANGHHQQHQNGHS 52
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.0 bits (59), Expect = 9.4
Identities = 9/79 (11%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 208 QDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRN 267
D ++ + A R E +L+++ + + ++ K +++ ++E L + +
Sbjct: 311 TDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE-LHEKFD 369
Query: 268 LALQKIQEQEYEMQRRQEQ 286
+ Q+++ +++ +++
Sbjct: 370 RLKKLHQDEKKKLEDKKKS 388
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 26.6 bits (58), Expect = 9.9
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 201 RVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQI--QMAHKLDLMRKKK 258
+VY++ QDK + +E K E K Q + ++
Sbjct: 21 KVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYL 80
Query: 259 QEYLQYQRNLALQKIQEQEYEMQRRQEQQKQYYMQNN 295
+ + + +Q+I ++ R + + +
Sbjct: 81 ERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLE 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.360
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,511,586
Number of extensions: 265781
Number of successful extensions: 752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 110
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.5 bits)