RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9160
(297 letters)
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 36.3 bits (83), Expect = 0.003
Identities = 23/191 (12%), Positives = 56/191 (29%), Gaps = 1/191 (0%)
Query: 100 KYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELDDFIRALKSQVEIF-VN 158
K D Q+ S V + + F++ L+ + +
Sbjct: 108 KRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEE 167
Query: 159 RMKSNSSRGRSIANDSSVQTLFVNITTMHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDAR 218
K + S +++ I L + ++ + +RV E Q + + +
Sbjct: 168 PRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ 227
Query: 219 AALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEY 278
+ E+ + + + + L + LQ Q L + Q++
Sbjct: 228 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Query: 279 EMQRRQEQQKQ 289
M+ + +
Sbjct: 288 IMKNEIQDLQT 298
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.7 bits (64), Expect = 0.50
Identities = 8/65 (12%), Positives = 23/65 (35%)
Query: 226 EEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQE 285
EE +KL + + Q+ + H + +++ + +E Q+ +
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMES 104
Query: 286 QQKQY 290
++
Sbjct: 105 NKENR 109
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/76 (14%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 213 QVKDARAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRNLALQK 272
++ A E +K E + + ++A K++ ++ ++ +L LQ+
Sbjct: 64 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLA-AMLERLQE 122
Query: 273 IQEQEYEMQRRQEQQK 288
+ E+++ +E ++
Sbjct: 123 KDKHAEEVRKNKELKE 138
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 29.0 bits (64), Expect = 0.67
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 11/101 (10%)
Query: 28 FQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSGYHHQ 87
+Q+ N+G + +H + + L + + + + +
Sbjct: 89 YQLTVNNGVNA-----NHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGD 143
Query: 88 EEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHT 128
T + ++ + + +N T
Sbjct: 144 LLVT------IQYTVNVAQKSLEIVYKGKLTAGEATPINLT 178
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 28.5 bits (63), Expect = 0.84
Identities = 13/101 (12%), Positives = 30/101 (29%)
Query: 189 RLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQIQMA 248
+L + + + K+ ++ A A + +R + + L EA Q Q
Sbjct: 166 QLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDE 225
Query: 249 HKLDLMRKKKQEYLQYQRNLALQKIQEQEYEMQRRQEQQKQ 289
+ E + + ++ R+Q
Sbjct: 226 AWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAP 266
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon
Pyrococcus woesei [TaxId: 2262]}
Length = 74
Score = 26.5 bits (58), Expect = 0.99
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 48 EDTGNSNPELAKYLDRSYWEQKKVPPNHGSHHGQSGY 84
E TGN + K +D S W + PP H +G GY
Sbjct: 30 EYTGNLGGWVDKRVDSSGWVYLEAPP-HDPANGYYGY 65
>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
{Methanosarcina mazei [TaxId: 2209]}
Length = 199
Score = 27.5 bits (61), Expect = 1.4
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 93 NSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEASDTELD--DFIRALK 150
+ PE + ++ + G HG + G+ P A + ++D DF+
Sbjct: 106 LTQPEKINASPKELPDKVEIGKHGLIVKQGYC----QGLLLPQVAPENDMDSIDFLSHTC 161
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 27.5 bits (60), Expect = 2.5
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 90 DTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNHTSGVTSPDEA-SDTELDDFIRA 148
+ + L + G HG+ + + + + E + +L A
Sbjct: 381 ALPKDPEAVRRAL-------AERGFHGATPVPREYGENLALF-AATELHEEEDLLALREA 432
Query: 149 LKS 151
LK
Sbjct: 433 LKE 435
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.9 bits (59), Expect = 3.1
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 186 MHSRLLKYIQQKDDKRVYYEGLQDKLTQVKDARAALNALREEHNEKLRREAQIAERQKQI 245
RL + L+ + + ++ L + +++RRE ++AERQ +
Sbjct: 280 SQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHR-LDEVRREIELAERQYDL 338
Query: 246 QMAHKLDLMRKKKQEYLQYQRNLALQKIQEQE 277
A +L R + L+ + +K++
Sbjct: 339 NRAAEL---RYGELPKLEAEVEALSEKLRGAR 367
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 26.5 bits (58), Expect = 5.4
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 209 DKLTQVKDARAALNALREE-HNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEYLQYQRN 267
D + + + + L N L A+I + + + Y R
Sbjct: 421 DSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGI---GGTGKAFAEAYRNLLRE 477
Query: 268 LALQKIQEQEYEMQRRQEQQKQYYMQNN 295
L+ ++E+++ +R +++Q M+
Sbjct: 478 EPLEILREEDFVAEREASERRQQEMEAA 505
>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain
{Flavobacterium sp. 92 [TaxId: 197856]}
Length = 422
Score = 26.3 bits (56), Expect = 5.5
Identities = 15/110 (13%), Positives = 24/110 (21%), Gaps = 5/110 (4%)
Query: 23 YIMLLFQVPPNHGPHHGQSGYHHQEEDTGNSNPELAKYL-----DRSYWEQKKVPPNHGS 77
+ L + +HG + H D + E L R + V +H
Sbjct: 71 WPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIG 130
Query: 78 HHGQSGYHHQEEDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDHHMNH 127
H D N + Q Y +
Sbjct: 131 KHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFV 180
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab
(Limulus polyphemus) [TaxId: 6850]}
Length = 94
Score = 24.7 bits (54), Expect = 6.1
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 89 EDTGNSNPELAKYLDRSYWEQKKYGTHGSHYSTDH-------HMNHTSGVTSPDEASDTE 141
++ + L K+L + ++ K G + +++ G+ +PD S
Sbjct: 17 QEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRT 76
Query: 142 LDDF 145
Sbjct: 77 FGPL 80
>d1wada_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas [TaxId:
879]}
Length = 111
Score = 24.7 bits (53), Expect = 6.9
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 30 VPPNHGPHHGQ--SGYHHQEEDTGNSNPELAKYLDRS-YWEQKKVPPNHGSHHGQSGYHH 86
V NH H HH D + + ++ H + G
Sbjct: 22 VVFNHSTHKDVKCDDCHHDPGDKQYAGCTTDGCHNILDKADKSVNSWYKVVHDAKGGAKP 81
Query: 87 Q 87
Sbjct: 82 T 82
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 25.5 bits (55), Expect = 7.3
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 218 RAALNALREEHNEKLRREAQIAERQKQIQMAHKLDLMRKKKQEY 261
RA A+RE ++RRE + +++ D + + ++++
Sbjct: 223 RACKLAIRESIESEIRRERERQTNPSAMEVEED-DPVPEIRRDH 265
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.126 0.360
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,071,418
Number of extensions: 49045
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 43
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)