BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9164
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 47/314 (14%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ +QIE L + G+R++ + VS + ++ E K IS+V + +++ GT +
Sbjct: 33 LIEYQIEYLRKCGIRDITVIVSSKNKEY-----FEKKLKEISIV-TQKDDIKGTGAAILS 86
Query: 61 AKDILNKSQ----EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVL 116
AK N F N IC+ +++ KE I+ +V P YGV++
Sbjct: 87 AK--FNDEALIIYGDLFFSNEKEICN-----IITL-----KENAIIGVKVSNPKDYGVLV 134
Query: 117 YNEHGCIESFIEKPQEFVSNKINAGMYIFNPSV---LDRIEIKPTSIEKEI---FPLMSK 170
+ + IEKP+ SN INAG+Y N + LD+I I E E+ LM+K
Sbjct: 135 LDNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERG-ELELTDAINLMAK 193
Query: 171 EKQLYAMELKGFWMDVGQPRD-------------FLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ ++ +E +G+WMD+G+P + F + + ++++ K +++E I
Sbjct: 194 DHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEI 253
Query: 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277
++ IG G IGPN + P ++ ++++ I VK +EG I
Sbjct: 254 KSGTYIEGPVYIGKGSEIGPNSYLRPYTIL-----VEKNKIGASVEVKESVIMEGSKIPH 308
Query: 278 KCVVGQWVRMENIT 291
VG V E++
Sbjct: 309 LSYVGDSVIAEDVN 322
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 67 KSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESF 126
K E F D + D K + FHK HGK+ T+ T P ++G L + G + SF
Sbjct: 120 KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGA-LDIQAGQVRSF 176
Query: 127 IEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDV 186
EKP+ IN G ++ NPSV+D I+ T+ E+E ++++ +L A E GFW
Sbjct: 177 QEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFW--- 232
Query: 187 GQPRDFLKGMCLYLNSLRQK 206
QP D L+ +YL L +K
Sbjct: 233 -QPMDTLRDK-VYLEGLWEK 250
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 12/196 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + R + +L + + G+ + + EP G A +
Sbjct: 36 MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIV 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
KD + S+ VL ++ F +++ + I V +P +GVV ++
Sbjct: 96 GKDFIGDSKVAL-VLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVL---------DRIEIKPTSIEKEIFPLMSKE 171
G + S EKP SN + G+Y ++ V+ DR E++ TS+ +E +
Sbjct: 155 GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLR 214
Query: 172 KQLYAMELKGFWMDVG 187
+L + W+D G
Sbjct: 215 VELMGRGMA--WLDTG 228
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P GTA +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGTAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G+Y ++ SV++ + +KP++ E EI + M + +
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G+Y ++ SV++ + +KP++ E EI + M + +
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 46/351 (13%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H ++ + + V ++AE +E+ L +T+ F ++E LGT + +
Sbjct: 32 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAEQTE-------FVTQSEQLGTGHAVMM 84
Query: 61 AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
+ IL V+ D +I K+L+ FH NH TI+ + + P YG ++ N
Sbjct: 85 TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 144
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
++ + +E+ E +IN G Y+F N + + ++ T+ + + +
Sbjct: 145 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 195
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
Y ++ G + + G+ +DF + + + L + + + + G V
Sbjct: 196 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 255
Query: 224 DPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+P AT I I P V I V+++G I T+L + +++ IG V+
Sbjct: 256 NPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNG-----TYVVDSTIGAGAVIT 310
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
+++ E + VG + + + LG V + + + V G +
Sbjct: 311 N-------SMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 354
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
T+GP I PN ++G V I V +K S+I + +++ C +G G
Sbjct: 324 TVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGT-- 381
Query: 288 ENITVLGECIIGWKCVVGQWV 308
ITV + +K V+G V
Sbjct: 382 --ITVNYDGKNKYKTVIGDNV 400
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVDPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G+Y ++ SV++ + +KP++ E EI + M + +
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 46/351 (13%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H ++ + + V ++AE +E+ L +T+ F ++E LGT + +
Sbjct: 41 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTE-------FVTQSEQLGTGHAVMM 93
Query: 61 AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
+ IL V+ D +I K+L+ FH NH TI+ + + P YG ++ N
Sbjct: 94 TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 153
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
++ + +E+ E +IN G Y+F N + + ++ T+ + + +
Sbjct: 154 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 204
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
Y ++ G + + G+ +DF + + + L + + + + G V
Sbjct: 205 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 264
Query: 224 DPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+P AT I I P V I V+++G I T+L + +++ IG V+
Sbjct: 265 NPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNG-----TYVVDSTIGAGAVIT 319
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
+++ E + VG + + + LG V + + + V G +
Sbjct: 320 N-------SMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 363
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
T+GP I PN ++G V I V +K S+I + +++ C +G G
Sbjct: 333 TVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGT-- 390
Query: 288 ENITVLGECIIGWKCVVGQWV 308
ITV + +K V+G V
Sbjct: 391 --ITVNYDGKNKYKTVIGDNV 409
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQK 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G+Y ++ SV++ + +KP++ E EI + M + +
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 136/324 (41%), Gaps = 47/324 (14%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H ++ + + V ++AE +E+ L +T+ F ++E LGT + +
Sbjct: 32 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTE-------FVTQSEQLGTGHAVMM 84
Query: 61 AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
+ IL V+ D +I K+L+ FH NH TI+ + + P YG ++ N
Sbjct: 85 TEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN 144
Query: 119 EHGCIESFIEKPQ----EFVSNKINAGMYIF-NPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
++ + +E+ E +IN G Y+F N + + ++ T+ + + +
Sbjct: 145 DNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN---------NAQGE 195
Query: 174 LYAMELKGFWMDVGQP------RDFLKGMC----LYLNSLRQKRPKLLKEGDGIVGNVLV 223
Y ++ G + + G+ +DF + + + L + + + + G V
Sbjct: 196 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFV 255
Query: 224 DPTAT-------IGPGCRIGPNVT------IGPGVVIEGGVCIKRSTILRDAIVKSHSWL 270
+P AT I +I NVT IG V+ G + STI A++ ++S +
Sbjct: 256 NPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMI 314
Query: 271 EGCIIGWKCVVGQWVRMENITVLG 294
E + +VG + + + LG
Sbjct: 315 EESSVADGVIVGPYAHIRPNSSLG 338
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G++ ++ SV++ + +KP++ E EI + M + +
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLFFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV ++++
Sbjct: 96 GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP E SN G+Y ++ V+ + +KP++ E EI + + + +
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
AM +G+ W+D G
Sbjct: 215 VAMMGRGYAWLDTG 228
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + + VL +I L+ N T+ V +P +YGVV ++++
Sbjct: 96 GEEFIG-ADDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP E SN G+Y ++ V+ + +KP++ E EI + + + +
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
A+ +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE+++ + + +L + G+ L ++ + P G A +
Sbjct: 45 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 104
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ + VL ++ F +L+ ++ V +P +YGVV +++
Sbjct: 105 GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 163
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
G S EKP E SN G+Y ++ V+D ++KP+
Sbjct: 164 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 202
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV ++++
Sbjct: 96 GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIF-NPSVLDRIEIKPTSI-EKEIFPL----MSKEKQL 174
G S EKP E SN G+Y + N VL +KP++ E EI + + + +
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVLMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
A+ +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE+++ + + +L + G+ L ++ + P G A +
Sbjct: 44 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 103
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ + VL ++ F +L+ ++ V +P +YGVV +++
Sbjct: 104 GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 162
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
G S EKP E SN G+Y ++ V+D ++KP+
Sbjct: 163 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 201
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE+++ + + +L + G+ L ++ + P G A +
Sbjct: 35 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 94
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ + VL ++ F +L+ ++ V +P +YGVV +++
Sbjct: 95 GESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 153
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLD-RIEIKPT 158
G S EKP E SN G+Y ++ V+D ++KP+
Sbjct: 154 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPS 192
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV +++
Sbjct: 96 GEEFIGHD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQA 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTS 159
G S EKP + SN G+Y ++ SV++ + +KP++
Sbjct: 155 GTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSA 194
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV ++++
Sbjct: 96 GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP E SN G+Y ++ V+ + +KP++ E EI + + + +
Sbjct: 155 GTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLS 214
Query: 175 YAMELKGF-WMDVG 187
A+ +G+ W+D G
Sbjct: 215 VALMGRGYAWLDTG 228
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
ML H + A+ + + +I+ + + +++ + LG ++ + ++ PLGT
Sbjct: 44 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 103
Query: 56 GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
G AL D ++ P L++D + D L++ H+ T++ T +++P
Sbjct: 104 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 156
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
YG +L + + + +E+ P + ++NAG+Y F+ + L + + ++E+
Sbjct: 157 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 216
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ L S + ++A + + G R L + LN + + +
Sbjct: 217 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 269
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
G +VDP T I IG + I PG + GG C + T L D ++
Sbjct: 270 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 329
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
V++H IG VG + + T LG +G +V ++N T+ G V
Sbjct: 330 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 381
Query: 324 DELYVNGGQVLPHKSIGSS 342
YV + + +IG+S
Sbjct: 382 HLTYVGDADIGEYSNIGAS 400
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
ML H + A+ + + +I+ + + +++ + LG ++ + ++ PLGT
Sbjct: 42 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 101
Query: 56 GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
G AL D ++ P L++D + D L++ H+ T++ T +++P
Sbjct: 102 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 154
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
YG +L + + + +E+ P + ++NAG+Y F+ + L + + ++E+
Sbjct: 155 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 214
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ L S + ++A + + G R L + LN + + +
Sbjct: 215 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 267
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
G +VDP T I IG + I PG + GG C + T L D ++
Sbjct: 268 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 327
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
V++H IG VG + + T LG +G +V ++N T+ G V
Sbjct: 328 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 379
Query: 324 DELYVNGGQVLPHKSIGSS 342
YV + + +IG+S
Sbjct: 380 HLTYVGDADIGEYSNIGAS 398
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 59/379 (15%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
ML H + A+ + + +I+ + + +++ + LG ++ + ++ PLGT
Sbjct: 36 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 95
Query: 56 GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
G AL D ++ P L++D + D L++ H+ T++ T +++P
Sbjct: 96 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 148
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
YG +L + + + +E+ P + ++NAG+Y F+ + L + + ++E+
Sbjct: 149 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 208
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ L S + ++A + + G R L + LN + + +
Sbjct: 209 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 261
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
G +VDP T I IG + I PG + GG C + T L D ++
Sbjct: 262 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 321
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
V++H IG VG + + T LG +G +V ++N T+ G V
Sbjct: 322 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI-GTGTKVP 373
Query: 324 DELYVNGGQVLPHKSIGSS 342
YV + + +IG+S
Sbjct: 374 HLTYVGDADIGEYSNIGAS 392
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
+ + + L AG+RE+++ + + L + + GI L ++ + P G A +
Sbjct: 37 IYYPLSVLXLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIG 96
Query: 62 KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
+ LN + VL +I F + + T+ QV +P ++GVV ++++
Sbjct: 97 ETFLN-GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVXDPERFGVVEFDDNF 155
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVL---------DRIEIKPTSIEKEIFPLMSKEK 172
S EKP++ SN G+Y ++ V+ +R E++ TSI + +
Sbjct: 156 RAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQXYLEAGNLTV 215
Query: 173 QLYAMELKGF-WMDVG 187
+L +GF W+D G
Sbjct: 216 ELLG---RGFAWLDTG 228
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
+ + + L AG+RE+++ + + +L + G+ L ++ + P G A +
Sbjct: 36 IYYPLSTLXLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIG 95
Query: 62 KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
+ + VL ++ F +L+ ++ V +P +YGVV +++ G
Sbjct: 96 ESFIGNDLSAL-VLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQGG 154
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVLD---------RIEIKPTSIEKEIFPLMSKEK 172
S EKP E SN G+Y ++ V+D R E++ T + + E+
Sbjct: 155 KAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYL-----ER 209
Query: 173 QLYAMELKG---FWMDVG 187
++E+ G W+D G
Sbjct: 210 GQLSVEIXGRGYAWLDTG 227
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTV--ETKKLGISLVFSHENEPLGTAGPL 58
M+ H + L + + ++++ E M D ++ ++ G+S + +++ G A L
Sbjct: 57 MIYHAVYKLKQCDITDIMIITG--KEHMGDVVSFLGSGQEFGVSFTYRVQDKAGGIAQAL 114
Query: 59 ALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
L +D + + +L +I D + V N + +++ V++P ++GV
Sbjct: 115 GLCEDFVGNDR-MVVILGDNIFSD-DIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQ 172
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTSI-EKEIFPLMS---KEKQ 173
IE EKP+E S+ G+Y+++ V I E+KP++ E EI + + K
Sbjct: 173 NRKIIE-IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGV 231
Query: 174 LYAMELKGFWMDVG 187
L E+ G+W D G
Sbjct: 232 LTYNEMSGWWTDAG 245
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 58/352 (16%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTA----- 55
ML H + A+ + + +I+ + + +++ + LG ++ + ++ PLGT
Sbjct: 38 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 97
Query: 56 GPLALAKD-----ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPS 110
G AL D ++ P L++D + D L++ H+ T++ T +++P
Sbjct: 98 GLSALPDDYAGNVVVTSGDTPL--LDADTLAD-----LIATHRAVSAAVTVLTTTLDDPF 150
Query: 111 KYGVVLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEI 164
YG +L + + + +E+ P + ++NAG+Y F+ + L + + ++E+
Sbjct: 151 GYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQEL 210
Query: 165 FP------LMSKEKQLYAMELKGFWMDVG-QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ L S + ++A + + G R L + LN + + +
Sbjct: 211 YLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELN-------RRVVAAHQL 263
Query: 218 VGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIE-----GGVC-IKRSTILRD-------AI 263
G +VDP T I IG + I PG + GG C + T L D ++
Sbjct: 264 AGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASV 323
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITV 315
V++H IG VG + + T LG +G +V ++N T+
Sbjct: 324 VRTHG--SSSSIGDGAAVGPFTYLRPGTALGA-----DGKLGAFVEVKNSTI 368
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 132/330 (40%), Gaps = 50/330 (15%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+A ++ G + V L + E ++ L SL + + E LGT +
Sbjct: 35 MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP------SLNWVLQAEQLGTGHAMQQ 88
Query: 61 AKDILNKSQEPFFVLNSDIIC---DFPFKDLVSFHK--NHGKEGTI--VVTQVEEPSKYG 113
A P F + DI+ D P + + + EG I + +++ PS YG
Sbjct: 89 AA--------PHFADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYG 140
Query: 114 VVLYNEHGCIESFIEKPQEFVS----NKINAGMYIFNP-------SVLDRIEIKPTSIEK 162
++ E+G + +E + N+IN G+ + N S+LD +
Sbjct: 141 RIV-RENGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYIT 199
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVL 222
+I L + + A +V + L+ L ++ KLL + G +L
Sbjct: 200 DIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLL-----LAGVML 254
Query: 223 VDPTATIGPG-CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
+DP+ G G ++TI V+IEG V IL D + GC++ CV+
Sbjct: 255 LDPSRFDLRGELTHGRDITIDTNVIIEGHV------ILGDRVRIG----TGCVL-KNCVI 303
Query: 282 GQWVRMENITVLGECIIGWKCVVGQWVRME 311
G + TVL + + C VG + R+
Sbjct: 304 GDDSEISPYTVLEDARLDANCTVGPFARLR 333
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 132/330 (40%), Gaps = 50/330 (15%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+A ++ G + V L + E ++ L SL + + E LGT +
Sbjct: 38 MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP------SLNWVLQAEQLGTGHAMQQ 91
Query: 61 AKDILNKSQEPFFVLNSDIIC---DFPFKDLVSFHK--NHGKEGTI--VVTQVEEPSKYG 113
A P F + DI+ D P + + + EG I + +++ PS YG
Sbjct: 92 AA--------PHFADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYG 143
Query: 114 VVLYNEHGCIESFIEKPQEFVS----NKINAGMYIFNP-------SVLDRIEIKPTSIEK 162
++ E+G + +E + N+IN G+ + N S+LD +
Sbjct: 144 RIV-RENGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYIT 202
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVL 222
+I L + + A +V + L+ L ++ KLL + G +L
Sbjct: 203 DIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLL-----LAGVML 257
Query: 223 VDPTATIGPG-CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
+DP+ G G ++TI V+IEG V IL D + GC++ CV+
Sbjct: 258 LDPSRFDLRGELTHGRDITIDTNVIIEGHV------ILGDRVRIG----TGCVL-KNCVI 306
Query: 282 GQWVRMENITVLGECIIGWKCVVGQWVRME 311
G + TVL + + C VG + R+
Sbjct: 307 GDDSEISPYTVLEDARLDANCTVGPFARLR 336
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ P+A I ++G NV+IG VIE GV + + I+ GC +G +G
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIG----------AGCFVGKNSKIG 149
Query: 283 QWVRM-ENITVLGECIIGWKCVVGQWVRMENITVLGED 319
R+ N+T+ E IG C++ ++ TV+G D
Sbjct: 150 AGSRLWANVTIYHEIQIGQNCLI------QSGTVVGAD 181
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIKRS-TILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
IG GC +G N IG G + V I I ++ +++S + + G+ G WV++
Sbjct: 136 IGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKI 195
Query: 288 ENITVLGECIIGWKCVVGQWVRME----NITVLGEDVIVQDELYV 328
I G IIG + +G ++ + T++G VI+ ++ +
Sbjct: 196 PQI---GRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQI 237
>pdb|3R3R|A Chain A, Structure Of The Yrda Ferripyochelin Binding Protein From
Salmonella Enterica
Length = 187
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGG---VCIKRSTILRDAIV-----KSH 267
GI V++D ++ + R+ +V I P VVI G V I T ++D V KS
Sbjct: 17 GIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSS 76
Query: 268 SWLEG--CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDE 325
S G IIG VG V +L C IG + +VG M +I + G I++D+
Sbjct: 77 SNPHGNPLIIGEDVTVGHKV------MLHGCTIGNRVLVG----MGSIVLDG--AIIEDD 124
Query: 326 LYVNGGQVLP-HKSIGSSLHMLGEDV 350
+ + G ++P HK + S LG V
Sbjct: 125 VMIGAGSLVPQHKRLESGYLYLGSPV 150
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 46/233 (19%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMED------ELTVETKKLGISL----------- 43
++ + ++ VEAG+ ++I +ED EL G SL
Sbjct: 47 LIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTRLKPG 106
Query: 44 --VFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNH 95
+ + EP+G + A+DI+ EPF VL D DF F K +V +
Sbjct: 107 NIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPD---DFMFGQPGCLKQMVDAYNKV 161
Query: 96 GKEGTIVVTQV---EEPSKYGVVLYNEHGC----IESFIEKPQEFV--SNKINAGMYIFN 146
G G ++ + ++ +YG++ ++ +EKP SN G YI
Sbjct: 162 G--GNLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQ 219
Query: 147 PSVLDRIEIKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
P V+ +E + EI M ++ + + +G D G F++
Sbjct: 220 PEVMRILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQ 272
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ +QIE L E G+ ++I+ V Y EQ + +K G+ LVF+ + L L
Sbjct: 58 LIEYQIEFLKEKGINDIIIIVGYLKEQFD----YLKEKYGVRLVFNDKYADYNNFYSLYL 113
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDL 88
K+ L S +V+++D ++ FK++
Sbjct: 114 VKEELANS----YVIDAD---NYLFKNM 134
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 153 IEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
+ ++P + +E+FPL+ E + + + G + F+ M + +LR+K P L
Sbjct: 118 VSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGG-QKFMPEMMEKVRALRKKYPSLDI 176
Query: 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIG---PGVVIEG 249
E DG +G +D A+ G C + + G PG VI
Sbjct: 177 EVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISA 216
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 61/194 (31%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST-------------ILRDAIVKS 266
+ +V P A IG G +GP TIG V + G + S+ ++ A+V
Sbjct: 13 SAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGD 72
Query: 267 ----HSWLEGC--IIGWKCVVG-------------------------------------- 282
++++ GC IIG VVG
Sbjct: 73 ELPGYTFI-GCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSD 131
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK--SIG 340
+ V +N ++G C I C +G N T+L V+V+D + G V+ H+ IG
Sbjct: 132 KTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVV-HQFCHIG 190
Query: 341 SSLHMLGEDVIVQD 354
S + G V+ QD
Sbjct: 191 SFAFIGGGSVVSQD 204
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL--RDAIVKSHSWLEGCIIGWK 278
VL+ P+A + P IG V++GP I V + L + + E C++
Sbjct: 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTG 67
Query: 279 CVVGQ------WVRMENI----TVLG------------ECI--------IGWKCVVGQWV 308
VVG ++ NI V+G EC I C + +
Sbjct: 68 AVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSS 127
Query: 309 RMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVL 364
+ + TV+G++ ++ ++ + ++I ++ +L V+V+D + G V+
Sbjct: 128 KPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVV 183
>pdb|3HSQ|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3HSQ|B Chain B, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3HSQ|C Chain C, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3A|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3A|B Chain B, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3A|C Chain C, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3X|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3X|B Chain B, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
pdb|3I3X|C Chain C, Structural Basis For The Sugar Nucleotide And Acyl Chain
Selectivity Of Leptospira Interrogans Lpxa
Length = 259
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR--------DAIVKSHSWLEGCI 274
+ PTA I P + +V +GP +IEG V I+ TI+ I K + + +G +
Sbjct: 3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAV 62
Query: 275 IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL 334
IG V+ Q + N +L + +IG + ++ + T ++ ++ Y G +
Sbjct: 63 IG---VMPQDLGF-NQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHV 118
Query: 335 PHKSI 339
H I
Sbjct: 119 GHDCI 123
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 146/397 (36%), Gaps = 73/397 (18%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+A E G V L + + ++ L + +L + + E LGT +
Sbjct: 35 MVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDD------NLNWVLQAEQLGTGHAMQQ 88
Query: 61 AKDILNKSQEPFFVLNSDIIC---DFPFKDLVSFH-----KNHGKEGTIVVTQVEEPSKY 112
A PFF + DI+ D P + + K G G + V ++++P+ Y
Sbjct: 89 AA--------PFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTV-KLDDPTGY 139
Query: 113 GVVLYNEHGCIESFIEKPQEFVSNK----INAGMYIFNPSVLDRIEIKPTSIEK------ 162
G + E+G + +E + IN G+ I N + + R K T+
Sbjct: 140 GRIT-RENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYI 198
Query: 163 -EIFPLMSKE-------------------KQLYAMELKGFWMDVGQPRDFLKGMCLYLNS 202
+I L +E +L L+ + + L G+ L +
Sbjct: 199 TDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPA 258
Query: 203 LRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDA 262
R L D V +D I +G V IG G V IK S I D
Sbjct: 259 RFDLRGTLTHGRD-----VEIDTNVIIEGNVTLGHRVKIGTGCV------IKNSVIGDDC 307
Query: 263 IVKSHSWLEGCIIGWKCVVGQWVRMENITVL------GECIIGWKCVVGQWVRMENITVL 316
+ ++ +E + C +G + R+ L G + K +G+ + ++T L
Sbjct: 308 EISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYL 367
Query: 317 GEDVIVQDELYVNGGQVLPHKSIGSSLH-MLGEDVIV 352
G D + D + + G + + + ++G+DV V
Sbjct: 368 G-DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV 403
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ +QIE L E G+ ++I+ V Y EQ + +K G+ LVF+ + L L
Sbjct: 58 LIEYQIEFLKEKGINDIIIIVGYLKEQFD----YLKEKYGVRLVFNDKYADYNNFYSLYL 113
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKD 87
K+ L S +V+++D ++ FK+
Sbjct: 114 VKEELANS----YVIDAD---NYLFKN 133
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 127/346 (36%), Gaps = 58/346 (16%)
Query: 10 VEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPL----------------G 53
+ +G+R + +A Y+A + + + G NE G
Sbjct: 55 LNSGIRRIGVATQYKAHSL-----IRHLQRGWDFFRPERNESFDILPASQRVSETQWYEG 109
Query: 54 TAGPLALAKDILNK-SQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPS 110
TA + DI+ + E +L D I ++ + H + G + TI +V E +
Sbjct: 110 TADAVYQNIDIIEPYAPEYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEAT 169
Query: 111 KYGVVLYNEHGCIESFIEKPQE---FVSNK----INAGMYIFNPSVLD----RIEIKPTS 159
+GV NE I FIEKP + N+ + G+Y+F+ L R PTS
Sbjct: 170 GFGVXHVNEKDEIIDFIEKPADPPGIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTS 229
Query: 160 IE---KEIFPLMSKEKQLYA-----------MELKGFWMDVGQPRDFLKGMCLYLNSLRQ 205
K+I P + + + A E + +W DVG + + L
Sbjct: 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANI----DLTD 285
Query: 206 KRPKL--LKEGDGIVGNVLVDPTATI--GPGCRIGPNV-TIGPGVVIEGGVCIKRSTILR 260
P L + I + P A R G V ++ G I G + RS +
Sbjct: 286 VVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFT 345
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQ 306
S+S LE ++ +G+ ++ N+ + +I +VG+
Sbjct: 346 GVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGE 391
>pdb|3FS8|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FS8|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Acetyl-Coa
pdb|3FSB|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSB|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Quinovose
pdb|3FSC|A Chain A, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
pdb|3FSC|B Chain B, Crystal Structure Of Qdtc, The Dtdp-3-Amino-3,6-Dideoxy-D-
Glucose N-Acetyl Transferase From Thermoanaerobacterium
Thermosaccharolyticum In Complex With Coa And
Dtdp-3-Amino- Fucose
Length = 273
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 28/168 (16%)
Query: 207 RPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTI--LRDAIV 264
+ ++KEG I NV ++ I GC I NV I G I + + D I
Sbjct: 7 KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRIN 66
Query: 265 KSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI--- 321
K H IIG + +R EN+ + G+ IIG G V + T +G +V
Sbjct: 67 KKHP----LIIGENAL----IRTENV-IYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGT 117
Query: 322 ---VQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPH 366
+Q +Y+ G V H ++ +GE I++D ++ + PH
Sbjct: 118 LSDIQHHVYI-GNYVNIHSNV-----FVGEKSIIKDFVW-----LFPH 154
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 133/325 (40%), Gaps = 40/325 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+ + G + L + + M L E ++ V + E LGTA +
Sbjct: 35 MVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANEQ----VNWVL--QTEQLGTAHAVQQ 88
Query: 61 AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
A K E VL D +I + L+ +G ++ ++ P+ YG ++
Sbjct: 89 AAPFF-KDNENIVVLYGDAPLITKETLEKLIEAKPENGI--ALLTVNLDNPTGYGRII-R 144
Query: 119 EHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDR--IEIKPTSIEKEIF-----PL 167
E+G + + +E+ ++ ++N G+ + + + + + + + E + L
Sbjct: 145 ENGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIAL 204
Query: 168 MSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPT 226
+++ Q+ A++ M+V + L+ L ++ KLL EG I D
Sbjct: 205 ANQDNCQVVAVQATDV-MEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLR 263
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVR 286
T+ G +V I V+IEG V + + GC++ V+G V
Sbjct: 264 GTL----EHGKDVEIDVNVIIEGNVKLGDRVKIG----------TGCVL-KNVVIGNDVE 308
Query: 287 MENITVLGECIIGWKCVVGQWVRME 311
++ +VL + I+G K +G + R+
Sbjct: 309 IKPYSVLEDSIVGEKAAIGPFSRLR 333
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
+V A IGP R+ P + + V IK+ST+ + + V +++ IG C +
Sbjct: 319 IVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNI 378
Query: 282 GQWV 285
G V
Sbjct: 379 GAGV 382
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 201 NSLRQKRPK-LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTI 258
N+ ++ P +++EG + +V+++ A + +IG NV I G I I S +
Sbjct: 2 NAXKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRV 61
Query: 259 LRDAIV----KSHSWLE----GCIIGWKCVVGQWVRMENITVLGE--------------C 296
AIV + S+ E G +IG + ++ + + T G+ C
Sbjct: 62 FSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIXAYC 121
Query: 297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK--SIGSSLHMLGEDVIVQD 354
I C++G + + N L V + D V GG H+ +G + G + QD
Sbjct: 122 HIAHDCLLGNNIILANNATLAGHVELGD-FTVVGGLTPIHQFVKVGEGCXIAGASALSQD 180
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-EGCIIGWKCV 280
+ PTA I PG ++ V +GP ++ V I R+TI ++++ H+ + E IG
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYAS 84
Query: 281 VG 282
VG
Sbjct: 85 VG 86
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 33/163 (20%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG------- 272
V V P A +G IG TIG VIEG +TI D + ++ + G
Sbjct: 40 TVEVGPYAIVGSNVTIGARTTIGSHSVIEG-----HTTIGEDNRIGHYASVGGRPQDMKY 94
Query: 273 ------CIIGWKCVVGQW-------VRMENITVLGE-------CIIGWKCVVGQWVRMEN 312
+IG + + ++ V+ +T LG+ IG C VG V + +
Sbjct: 95 KDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSS 154
Query: 313 ITVLGEDVIVQDELYVNG-GQVLPHKSIGSSLHMLGEDVIVQD 354
+ V + D V G V + IG+ + G +VQD
Sbjct: 155 NAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQD 197
>pdb|4EAB|A Chain A, X-Ray Crystal Structure Of The H141a Mutant Of
Gdp-Perosamine N-Acetyl Transferase From Caulobacter
Crescentus In Complex With Coa And Gdp- Perosamine
Length = 220
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LRQK + ++ G LV+ I P + P+V +G GV + GV I + +
Sbjct: 81 NRLRQKLGRKARDH----GFSLVN---AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIG 133
Query: 261 D-AIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
D AI+ + + ++ C +G C +G + G +G + +G R+ +G
Sbjct: 134 DLAIINTGAVVDADCRLGAACHLGPASALA-----GGVSVGERAFLGVGARVIPGVTIGA 188
Query: 319 DVIV 322
D IV
Sbjct: 189 DTIV 192
>pdb|4EA7|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter
Crescentus In Complex With Coa And Gdp-Perosamine At 1.0
Angstrom Resolution
pdb|4EA8|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter
Crescentus In Complex With Coenzyme A And
Gdp-N-Acetylperosamine At 1 Angstrom Resolution
pdb|4EA9|A Chain A, X-Ray Structure Of Gdp-Perosamine N-Acetyltransferase In
Complex With Transition State Analog At 0.9 Angstrom
Resolution
Length = 220
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LRQK + ++ + N + P+A + P R+G V + GV I I I+
Sbjct: 81 NRLRQKLGRKARDHGFSLVNA-IHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIIN 139
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
V H C +G C +G + G +G + +G R+ +G D
Sbjct: 140 TGAVVDHD----CRLGAACHLGPASALA-----GGVSVGERAFLGVGARVIPGVTIGADT 190
Query: 321 IV 322
IV
Sbjct: 191 IV 192
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 32/119 (26%)
Query: 217 IVGNVLVDPTATIGP------GCRIGPNVTIGPGVVI-------EGGVCIKRSTILRDAI 263
+ + VDP+A++G G RIG V+IG VI EGG R T+ D
Sbjct: 128 VAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHD-- 185
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI--TVLGEDV 320
+G V +++ V+G G+ G W ++ I +G+DV
Sbjct: 186 ---------------VTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV 229
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 200 LNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL 259
L+ L ++PK + PTA + + P+ ++G VIE G I
Sbjct: 108 LSHLFDRKPKAAAG---------IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGV-- 156
Query: 260 RDAIVKSHSWLEGCIIGWKCVVGQ--WVRMENITVLGECIIGWKCVV 304
+ +H C+IG + V+G+ W+ +T+ + IG + +
Sbjct: 157 ---SIGAH-----CVIGARSVIGEGGWL-APRVTLYHDVTIGARVSI 194
>pdb|4EAA|A Chain A, X-Ray Crystal Structure Of The H141n Mutant Of Perosamine
N- Acetyltransferase From Caulobacter Crescentus In
Complex With Coa And Gdp-Perosamine
Length = 220
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LRQK + ++ G LV+ I P + P+V +G GV + GV I + +
Sbjct: 81 NRLRQKLGRKARDH----GFSLVN---AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIG 133
Query: 261 D-AIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
D AI+ + + ++ C +G C +G + G +G + +G R+ +G
Sbjct: 134 DLAIINTGAVVDNDCRLGAACHLGPASALA-----GGVSVGERAFLGVGARVIPGVTIGA 188
Query: 319 DVIV 322
D IV
Sbjct: 189 DTIV 192
>pdb|3TIO|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|D Chain D, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|E Chain E, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIO|F Chain F, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrase,
Show Possible Allosteric Conformations
pdb|3TIS|A Chain A, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|B Chain B, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
pdb|3TIS|C Chain C, Crystal Structures Of Yrda From Escherichia Coli, A
Homologous Protein Of Gamma-Class Carbonic Anhydrases,
Show Possible Allosteric Conformations
Length = 183
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI----KRSTILRDAIVKSHSWLEGCIIG 276
V++D ++ + R+ +V I P VVI G V R+ I +++ G
Sbjct: 18 VMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDG 77
Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP- 335
+G+ V + + +L C IG + +VG ++L + IV+D++ + G ++P
Sbjct: 78 NPLTIGEDVTVGHKVMLHGCTIGNRVLVGMG------SILLDGAIVEDDVMIGAGSLVPQ 131
Query: 336 HKSIGSSLHMLGEDV 350
+K + S LG V
Sbjct: 132 NKRLESGYLYLGSPV 146
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL 259
D I ++DP+A I +IGP IGP V I G + ++
Sbjct: 37 DLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVV 81
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL 259
D I ++DP+A I +IGP IGP V I G + ++
Sbjct: 8 DLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVV 52
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGD 215
++F +++++KQ+YA++ Q D + YLN L+Q K+++ D
Sbjct: 27 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 79
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGD 215
++F +++++KQ+YA++ Q D + YLN L+Q K+++ D
Sbjct: 43 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGD 215
++F +++++KQ+YA++ Q D + YLN L+Q K+++ D
Sbjct: 23 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 75
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGD 215
++F +++++KQ+YA++ Q D + YLN L+Q K+++ D
Sbjct: 24 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 76
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST-ILRD 261
+ A IGP C +GP+V IG G V++ V + T I RD
Sbjct: 20 IGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 59
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIV 264
+ V PTA + G IG N IGP ++ V I T+L+ +V
Sbjct: 5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVV 49
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST-ILRD 261
+ A IGP C +GP+V IG G V++ V + T I RD
Sbjct: 22 IGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 61
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIV 264
+ V PTA + G IG N IGP ++ V I T+L+ +V
Sbjct: 7 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVV 51
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++F +++++KQ+YA++ Q D + YLN L+Q K+++
Sbjct: 71 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGD 215
++F +++++KQ+YA++ Q D + YLN L+Q K+++ D
Sbjct: 43 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++F +++++KQ+YA++ Q D + YLN L+Q K+++
Sbjct: 71 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++ ++L+ W+D D + Y++++R++ PKLL+
Sbjct: 216 KIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR 255
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++F +++++KQ+YA++ Q D + YLN L+Q K+++
Sbjct: 71 KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
V++ TA IG CRI +VT+G E G IKR T + + G + +
Sbjct: 185 VVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 244
Query: 281 VGQWVRM 287
VG VR+
Sbjct: 245 VGSHVRI 251
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
V++ TA IG CRI +VT+G E G IKR T + + G + +
Sbjct: 184 VVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 243
Query: 281 VGQWVRM 287
VG VR+
Sbjct: 244 VGSHVRI 250
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
V++ TA IG CRI +VT+G E G IKR T + + G + +
Sbjct: 186 VVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNII 245
Query: 281 VGQWVRM 287
VG VR+
Sbjct: 246 VGSHVRI 252
>pdb|3R1W|A Chain A, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|B Chain B, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
pdb|3R1W|C Chain C, Crystal Structure Of A Carbonic Anhydrase From A Crude Oil
Degrading Psychrophilic Library
Length = 189
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGG---VCIKRSTILRDA----IVKSHSWLEG 272
V VD ++ I +G + ++ P VI G + I T ++D I + + G
Sbjct: 25 RVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPG 84
Query: 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332
G+ ++G V + + +L C IG + ++G + + ++ ++VIV V+ G+
Sbjct: 85 ---GYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGK 141
Query: 333 VL 334
VL
Sbjct: 142 VL 143
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+V +D I +G V IG G V IK S I D + ++ +E + C
Sbjct: 46 DVEIDTNVIIEGNVTLGHRVKIGTGCV------IKNSVIGDDCEISPYTVVEDANLAAAC 99
Query: 280 VVGQWVRMENITVL------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
+G + R+ L G + K +G+ + ++T LG D + D + + G +
Sbjct: 100 TIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 158
Query: 334 LPHKSIGSSLH-MLGEDVIV 352
+ + ++G+DV V
Sbjct: 159 TCNYDGANKFKTIIGDDVFV 178
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 72 FFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHGCIESFIEK 129
+ +L D + ++ + H+ + T+ ++E + +G++ +E G I F EK
Sbjct: 139 YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEK 198
Query: 130 PQ 131
PQ
Sbjct: 199 PQ 200
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+V +D I +G V IG G V IK S I D + ++ +E + C
Sbjct: 40 DVEIDTNVIIEGNVTLGHRVKIGTGCV------IKNSVIGDDCEISPYTVVEDANLAAAC 93
Query: 280 VVGQWVRMENITVL------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
+G + R+ L G + K +G+ + ++T LG D + D + + G +
Sbjct: 94 TIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 152
Query: 334 LPHKSIGSSLH-MLGEDVIVQDE 355
+ + ++G+DV V +
Sbjct: 153 TCNYDGANKFKTIIGDDVFVGSD 175
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
G +FIE+P++F+ +K NA + +R+E ++EKE L K+ +
Sbjct: 1 RGSHMAFIERPEDFLKDKENAIQW--EKKEAERVEKNLDTLEKEALELYKKDSE 52
>pdb|4GY2|A Chain A, Crystal Structure Of Apo-ia-actin Complex
pdb|4H03|A Chain A, Crystal Structure Of Nad+-ia-actin Complex
pdb|4H0T|A Chain A, Crystal Structure Of Ia-adpr-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
G +FIE+P++F+ +K NA + +R+E ++EKE L K+ +
Sbjct: 1 RGSHMAFIERPEDFLKDKENAIQW--EKKEAERVEKNLDTLEKEALELYKKDSE 52
>pdb|4H0Y|A Chain A, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
G +FIE+P++F+ +K NA + +R+E ++EKE L K+ +
Sbjct: 1 RGSHMAFIERPEDFLKDKENAIQW--EKKEAERVEKNLDTLEKEALELYKKDSE 52
>pdb|4H0V|A Chain A, Crystal Structure Of Nad+-ia(e378s)-actin Complex
Length = 418
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
G +FIE+P++F+ +K NA + +R+E ++EKE L K+ +
Sbjct: 1 RGSHMAFIERPEDFLKDKENAIQW--EKKEAERVEKNLDTLEKEALELYKKDSE 52
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++ ++L+ W+D D + Y++++R++ PKLL+
Sbjct: 210 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 249
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++ ++L+ W+D D + Y++++R++ PKLL+
Sbjct: 210 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 249
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++ ++L+ W+D D + Y++++R++ PKLL+
Sbjct: 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 255
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212
++ ++L+ W+D D + Y++++R++ PKLL+
Sbjct: 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,911,819
Number of Sequences: 62578
Number of extensions: 527378
Number of successful extensions: 1443
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 144
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)