Query psy9164
Match_columns 380
No_of_seqs 366 out of 2365
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322|consensus 100.0 1.4E-55 3.1E-60 374.3 27.2 287 1-287 42-331 (371)
2 COG1207 GlmU N-acetylglucosami 100.0 3E-48 6.4E-53 341.8 29.7 363 1-379 32-440 (460)
3 COG1208 GCD1 Nucleoside-diphos 100.0 6.2E-46 1.3E-50 339.5 36.7 309 1-325 34-354 (358)
4 PRK14355 glmU bifunctional N-a 100.0 4.1E-45 9E-50 349.0 35.6 362 1-379 33-440 (459)
5 KOG1460|consensus 100.0 4.7E-45 1E-49 305.1 20.5 289 1-289 37-357 (407)
6 COG0448 GlgC ADP-glucose pyrop 100.0 1.4E-43 3E-48 312.9 25.9 298 1-310 39-360 (393)
7 PRK14352 glmU bifunctional N-a 100.0 2.2E-42 4.7E-47 331.8 36.0 368 1-379 34-442 (482)
8 PRK14358 glmU bifunctional N-a 100.0 2.3E-42 5E-47 330.1 35.9 362 1-379 37-442 (481)
9 PLN02241 glucose-1-phosphate a 100.0 1.9E-42 4.1E-47 327.0 33.1 348 1-363 37-435 (436)
10 PRK05293 glgC glucose-1-phosph 100.0 2.2E-42 4.8E-47 322.9 32.6 313 1-325 37-376 (380)
11 TIGR01173 glmU UDP-N-acetylglu 100.0 1.1E-41 2.4E-46 326.1 34.4 359 1-380 30-434 (451)
12 PRK14356 glmU bifunctional N-a 100.0 9.6E-41 2.1E-45 319.4 33.8 356 1-380 35-442 (456)
13 TIGR01208 rmlA_long glucose-1- 100.0 2.6E-40 5.7E-45 305.8 35.0 299 1-311 32-338 (353)
14 PRK02862 glgC glucose-1-phosph 100.0 9E-41 1.9E-45 314.7 32.3 300 1-310 37-392 (429)
15 PRK09451 glmU bifunctional N-a 100.0 8.3E-41 1.8E-45 319.3 29.5 358 1-379 35-437 (456)
16 PRK14353 glmU bifunctional N-a 100.0 8.5E-40 1.8E-44 312.0 35.5 361 1-380 35-424 (446)
17 PRK00844 glgC glucose-1-phosph 100.0 5.8E-40 1.3E-44 307.9 31.9 301 1-310 39-380 (407)
18 PRK14359 glmU bifunctional N-a 100.0 1.4E-39 3.1E-44 309.3 34.1 344 1-379 32-410 (430)
19 PRK14354 glmU bifunctional N-a 100.0 3.5E-39 7.6E-44 309.0 33.7 360 1-380 32-437 (458)
20 PRK14357 glmU bifunctional N-a 100.0 7E-39 1.5E-43 305.9 34.1 353 1-379 30-426 (448)
21 PRK00725 glgC glucose-1-phosph 100.0 6.6E-39 1.4E-43 301.7 31.5 300 1-309 49-391 (425)
22 PRK14360 glmU bifunctional N-a 100.0 2.8E-38 6.1E-43 302.1 35.1 360 1-380 31-434 (450)
23 TIGR02091 glgC glucose-1-phosp 100.0 1.6E-37 3.5E-42 288.3 31.3 300 1-310 32-359 (361)
24 TIGR02092 glgD glucose-1-phosp 100.0 8.2E-38 1.8E-42 290.8 27.0 298 1-310 36-353 (369)
25 KOG1461|consensus 100.0 1.6E-36 3.5E-41 278.3 26.0 326 1-336 57-425 (673)
26 COG1209 RfbA dTDP-glucose pyro 100.0 2.4E-32 5.3E-37 228.7 21.9 199 1-202 33-238 (286)
27 KOG1462|consensus 100.0 1.1E-31 2.5E-36 233.1 20.8 303 1-328 42-417 (433)
28 cd06425 M1P_guanylylT_B_like_N 100.0 1.3E-29 2.9E-34 220.9 24.5 200 1-200 33-233 (233)
29 cd06428 M1P_guanylylT_A_like_N 100.0 5.5E-29 1.2E-33 220.1 22.3 198 1-198 33-256 (257)
30 TIGR01105 galF UTP-glucose-1-p 100.0 1.7E-27 3.7E-32 212.3 22.9 197 1-199 36-276 (297)
31 PRK10122 GalU regulator GalF; 100.0 1.7E-26 3.7E-31 206.5 23.4 197 1-199 36-276 (297)
32 PF00483 NTP_transferase: Nucl 100.0 7.5E-27 1.6E-31 205.9 19.9 200 1-201 33-247 (248)
33 TIGR02623 G1P_cyt_trans glucos 100.0 3.9E-26 8.5E-31 200.9 23.3 194 1-200 32-245 (254)
34 TIGR01207 rmlA glucose-1-phosp 100.0 3.9E-26 8.4E-31 202.9 23.4 196 1-199 32-236 (286)
35 PRK15480 glucose-1-phosphate t 99.9 6.4E-26 1.4E-30 201.7 24.1 197 1-200 36-241 (292)
36 cd02538 G1P_TT_short G1P_TT_sh 99.9 5.2E-26 1.1E-30 199.2 23.0 196 1-199 33-237 (240)
37 PRK13389 UTP--glucose-1-phosph 99.9 6E-25 1.3E-29 196.9 23.0 195 1-199 41-279 (302)
38 cd06422 NTP_transferase_like_1 99.9 5.3E-25 1.2E-29 190.4 21.4 187 1-195 32-221 (221)
39 cd06915 NTP_transferase_WcbM_l 99.9 3.8E-24 8.3E-29 185.5 24.2 192 1-195 31-222 (223)
40 cd04189 G1P_TT_long G1P_TT_lon 99.9 6.1E-24 1.3E-28 185.8 24.8 197 1-201 33-235 (236)
41 cd02524 G1P_cytidylyltransfera 99.9 3.6E-24 7.7E-29 188.9 22.7 195 1-199 31-245 (253)
42 cd04181 NTP_transferase NTP_tr 99.9 6.7E-24 1.5E-28 183.2 22.6 184 1-187 31-217 (217)
43 cd06426 NTP_transferase_like_2 99.9 1.6E-23 3.5E-28 181.1 23.4 188 1-195 31-219 (220)
44 cd02541 UGPase_prokaryotic Pro 99.9 4E-23 8.7E-28 183.9 22.1 196 1-199 33-264 (267)
45 PRK12461 UDP-N-acetylglucosami 99.9 9.1E-24 2E-28 183.7 16.3 163 212-379 3-180 (255)
46 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 8.9E-24 1.9E-28 185.5 16.1 163 212-379 3-181 (254)
47 TIGR01099 galU UTP-glucose-1-p 99.9 4.6E-23 9.9E-28 182.8 20.7 192 1-195 33-260 (260)
48 PRK05289 UDP-N-acetylglucosami 99.9 1.2E-23 2.7E-28 184.7 16.5 164 210-379 4-184 (262)
49 TIGR01852 lipid_A_lpxA acyl-[a 99.9 1.9E-23 4.2E-28 183.4 17.1 163 212-379 2-180 (254)
50 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 5.7E-23 1.2E-27 185.2 19.9 191 183-379 67-296 (324)
51 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 8.2E-22 1.8E-26 180.5 21.5 228 121-378 36-304 (343)
52 cd03353 LbH_GlmU_C N-acetyl-gl 99.9 1.6E-21 3.5E-26 164.6 16.7 155 214-380 9-188 (193)
53 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 4.6E-21 1E-25 166.6 18.3 163 210-377 101-301 (338)
54 COG1043 LpxA Acyl-[acyl carrie 99.9 1.7E-21 3.6E-26 159.7 14.1 159 216-379 5-185 (260)
55 COG1210 GalU UDP-glucose pyrop 99.9 2.7E-20 5.8E-25 156.6 21.0 198 1-201 37-271 (291)
56 cd04197 eIF-2B_epsilon_N The N 99.9 1.6E-20 3.4E-25 161.7 16.6 146 1-150 33-217 (217)
57 cd03352 LbH_LpxD UDP-3-O-acyl- 99.8 3.9E-20 8.6E-25 157.8 16.9 160 213-379 12-193 (205)
58 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.1E-19 2.3E-24 149.1 15.4 131 209-363 6-161 (163)
59 COG1044 LpxD UDP-3-O-[3-hydrox 99.8 9.8E-20 2.1E-24 158.4 15.0 76 273-348 203-290 (338)
60 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 3.9E-20 8.4E-25 158.6 10.9 117 163-288 32-150 (231)
61 cd02523 PC_cytidylyltransferas 99.8 7.9E-19 1.7E-23 152.7 17.5 184 1-195 31-228 (229)
62 TIGR01853 lipid_A_lpxD UDP-3-O 99.8 8.4E-19 1.8E-23 158.2 17.3 137 214-351 115-286 (324)
63 PRK00892 lpxD UDP-3-O-[3-hydro 99.8 9.1E-19 2E-23 160.4 17.5 135 216-351 126-294 (343)
64 cd02508 ADP_Glucose_PP ADP-glu 99.8 1.6E-18 3.4E-23 147.4 15.3 152 1-186 32-200 (200)
65 cd04183 GT2_BcE_like GT2_BcbE_ 99.8 7.8E-18 1.7E-22 146.7 19.7 185 1-192 31-230 (231)
66 PRK12461 UDP-N-acetylglucosami 99.8 8.7E-18 1.9E-22 146.3 16.0 90 256-350 78-169 (255)
67 PRK05289 UDP-N-acetylglucosami 99.8 1.4E-17 3E-22 146.5 15.5 91 273-363 51-155 (262)
68 cd02540 GT2_GlmU_N_bac N-termi 99.8 4.2E-17 9.1E-22 141.9 18.2 185 1-191 28-228 (229)
69 cd03350 LbH_THP_succinylT 2,3, 99.8 1.4E-17 3.1E-22 132.5 13.7 82 272-379 49-134 (139)
70 cd04646 LbH_Dynactin_6 Dynacti 99.8 1.4E-17 3.1E-22 135.8 13.9 123 223-363 2-133 (164)
71 cd02517 CMP-KDO-Synthetase CMP 99.8 6.4E-17 1.4E-21 141.6 18.0 189 1-196 28-237 (239)
72 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.8 2.4E-17 5.1E-22 144.9 15.1 137 219-363 28-186 (254)
73 TIGR01852 lipid_A_lpxA acyl-[a 99.7 3.9E-17 8.4E-22 143.5 15.3 141 213-361 21-183 (254)
74 COG0663 PaaY Carbonic anhydras 99.7 3.1E-17 6.8E-22 130.3 12.3 125 214-351 11-140 (176)
75 cd03352 LbH_LpxD UDP-3-O-acyl- 99.7 1.1E-16 2.5E-21 136.5 16.8 139 226-364 7-165 (205)
76 cd02507 eIF-2B_gamma_N_like Th 99.7 1.9E-17 4.1E-22 142.3 11.8 147 1-150 33-216 (216)
77 COG1043 LpxA Acyl-[acyl carrie 99.7 3E-17 6.4E-22 134.9 12.0 139 220-363 3-156 (260)
78 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.1E-16 2.4E-21 131.2 14.0 119 210-328 25-162 (163)
79 PRK05450 3-deoxy-manno-octulos 99.7 6E-16 1.3E-20 136.0 19.3 190 1-198 29-243 (245)
80 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 7.4E-17 1.6E-21 138.1 12.9 65 294-363 172-236 (269)
81 TIGR03308 phn_thr-fam phosphon 99.7 7.9E-17 1.7E-21 135.8 12.6 134 222-379 4-151 (204)
82 cd00710 LbH_gamma_CA Gamma car 99.7 2.4E-16 5.2E-21 129.4 14.7 124 223-376 5-138 (167)
83 cd04198 eIF-2B_gamma_N The N-t 99.7 2.3E-16 5E-21 135.4 13.3 147 1-150 33-214 (214)
84 PLN02296 carbonate dehydratase 99.7 4E-16 8.7E-21 136.0 13.7 107 214-328 52-169 (269)
85 cd03353 LbH_GlmU_C N-acetyl-gl 99.7 1.9E-15 4.1E-20 127.6 16.2 119 212-331 25-162 (193)
86 cd04745 LbH_paaY_like paaY-lik 99.7 8.9E-16 1.9E-20 124.5 13.5 100 224-329 4-112 (155)
87 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 6.6E-16 1.4E-20 133.8 13.2 84 274-362 152-238 (272)
88 TIGR02287 PaaY phenylacetic ac 99.7 1.1E-15 2.4E-20 127.1 13.8 105 215-331 9-122 (192)
89 cd04645 LbH_gamma_CA_like Gamm 99.7 8.1E-16 1.8E-20 124.6 12.3 99 224-328 3-110 (153)
90 cd04650 LbH_FBP Ferripyochelin 99.7 8.4E-16 1.8E-20 124.1 12.3 100 224-329 4-112 (154)
91 PRK14353 glmU bifunctional N-a 99.7 1.6E-15 3.4E-20 145.1 15.7 116 210-331 270-398 (446)
92 cd04646 LbH_Dynactin_6 Dynacti 99.7 9.8E-16 2.1E-20 125.0 12.1 101 255-379 17-128 (164)
93 PRK13627 carnitine operon prot 99.7 1.8E-15 3.8E-20 126.3 13.7 123 216-351 12-139 (196)
94 TIGR01173 glmU UDP-N-acetylglu 99.7 1.6E-15 3.5E-20 145.4 14.9 128 212-345 271-417 (451)
95 PRK13368 3-deoxy-manno-octulos 99.6 9.9E-15 2.1E-19 127.7 17.8 186 1-197 29-236 (238)
96 COG1207 GlmU N-acetylglucosami 99.6 1.4E-15 3.1E-20 135.6 12.2 130 210-345 276-424 (460)
97 cd02509 GDP-M1P_Guanylyltransf 99.6 3.6E-15 7.7E-20 132.5 14.8 187 1-191 35-273 (274)
98 COG0663 PaaY Carbonic anhydras 99.6 1.7E-15 3.7E-20 120.4 11.0 124 220-379 11-134 (176)
99 PLN02472 uncharacterized prote 99.6 4E-15 8.6E-20 128.1 13.7 106 216-329 61-177 (246)
100 PRK13627 carnitine operon prot 99.6 2.8E-15 6.1E-20 125.2 11.5 122 220-379 10-133 (196)
101 COG1213 Predicted sugar nucleo 99.6 1.6E-14 3.4E-19 119.8 15.3 191 1-203 33-232 (239)
102 PRK14358 glmU bifunctional N-a 99.6 1.5E-14 3.2E-19 138.9 15.7 115 214-329 282-415 (481)
103 PRK09451 glmU bifunctional N-a 99.6 1E-14 2.2E-19 139.8 14.6 118 210-328 273-409 (456)
104 cd03350 LbH_THP_succinylT 2,3, 99.6 2.4E-14 5.2E-19 113.9 14.1 112 212-337 5-126 (139)
105 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 1.4E-14 3E-19 124.2 13.2 28 302-329 174-201 (269)
106 PLN02296 carbonate dehydratase 99.6 9.3E-15 2E-19 127.5 12.1 101 218-332 50-155 (269)
107 PRK14355 glmU bifunctional N-a 99.6 2.9E-14 6.2E-19 136.7 16.1 86 235-326 265-351 (459)
108 TIGR01479 GMP_PMI mannose-1-ph 99.6 5.6E-14 1.2E-18 133.8 15.7 191 1-195 35-280 (468)
109 PRK14360 glmU bifunctional N-a 99.6 4.1E-14 8.8E-19 135.6 13.7 109 220-330 280-407 (450)
110 cd04745 LbH_paaY_like paaY-lik 99.6 8.6E-14 1.9E-18 112.9 13.2 102 210-316 8-117 (155)
111 PRK14356 glmU bifunctional N-a 99.6 8.2E-14 1.8E-18 133.7 15.2 127 232-364 263-413 (456)
112 PRK10502 putative acyl transfe 99.6 2.8E-14 6.1E-19 118.5 10.2 112 223-379 54-167 (182)
113 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.3E-13 2.9E-18 112.4 13.3 52 272-329 72-123 (161)
114 PRK14357 glmU bifunctional N-a 99.5 1E-13 2.2E-18 132.7 14.4 87 246-332 292-402 (448)
115 PRK10092 maltose O-acetyltrans 99.5 5.5E-14 1.2E-18 116.2 10.4 78 274-379 95-172 (183)
116 PRK14354 glmU bifunctional N-a 99.5 1.9E-13 4.2E-18 131.3 15.5 130 234-370 261-415 (458)
117 cd03360 LbH_AT_putative Putati 99.5 1.7E-13 3.7E-18 116.1 12.7 26 349-379 168-193 (197)
118 PRK14352 glmU bifunctional N-a 99.5 3.1E-13 6.6E-18 130.3 15.5 117 214-332 283-418 (482)
119 cd03358 LbH_WxcM_N_like WcxM-l 99.5 2.1E-13 4.6E-18 105.7 11.7 114 224-351 2-116 (119)
120 PRK14359 glmU bifunctional N-a 99.5 2E-13 4.3E-18 130.1 14.0 104 225-332 252-355 (430)
121 PRK09527 lacA galactoside O-ac 99.5 9.1E-14 2E-18 116.2 10.2 44 313-379 131-174 (203)
122 cd04650 LbH_FBP Ferripyochelin 99.5 4.1E-13 8.9E-18 108.5 13.7 106 209-319 7-120 (154)
123 TIGR03570 NeuD_NnaD sugar O-ac 99.5 2.6E-13 5.6E-18 115.5 12.8 25 350-379 172-196 (201)
124 cd00710 LbH_gamma_CA Gamma car 99.5 5.1E-13 1.1E-17 109.7 13.6 113 210-329 10-132 (167)
125 cd03358 LbH_WxcM_N_like WcxM-l 99.5 1.4E-13 3E-18 106.8 9.7 105 244-379 4-110 (119)
126 TIGR02287 PaaY phenylacetic ac 99.5 3.5E-13 7.6E-18 112.2 12.4 105 210-319 16-128 (192)
127 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 4.8E-13 1E-17 116.1 13.6 19 217-235 106-124 (272)
128 cd04649 LbH_THP_succinylT_puta 99.5 8.7E-13 1.9E-17 102.2 13.2 106 218-338 5-114 (147)
129 cd05824 LbH_M1P_guanylylT_C Ma 99.5 6.5E-13 1.4E-17 94.9 10.7 65 223-287 2-66 (80)
130 cd04645 LbH_gamma_CA_like Gamm 99.5 1E-12 2.2E-17 106.5 12.7 104 209-317 6-117 (153)
131 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 6.8E-13 1.5E-17 113.9 11.8 105 210-328 88-193 (231)
132 KOG1461|consensus 99.5 1.8E-13 3.9E-18 127.3 8.7 97 211-313 324-420 (673)
133 cd03357 LbH_MAT_GAT Maltose O- 99.4 5.2E-13 1.1E-17 109.8 10.0 79 273-379 83-161 (169)
134 PRK09677 putative lipopolysacc 99.4 5.8E-13 1.3E-17 111.7 10.4 122 234-379 45-173 (192)
135 PLN02472 uncharacterized prote 99.4 1.6E-12 3.4E-17 112.1 13.1 123 222-359 61-189 (246)
136 cd03359 LbH_Dynactin_5 Dynacti 99.4 3E-12 6.4E-17 104.5 13.2 36 296-332 73-108 (161)
137 TIGR03570 NeuD_NnaD sugar O-ac 99.4 5.5E-12 1.2E-16 107.3 15.2 52 272-328 135-186 (201)
138 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 1.7E-12 3.6E-17 93.0 10.0 78 223-307 2-79 (81)
139 cd03360 LbH_AT_putative Putati 99.4 5.6E-12 1.2E-16 106.8 14.9 51 273-328 133-183 (197)
140 cd04649 LbH_THP_succinylT_puta 99.4 2.3E-12 5E-17 99.9 11.1 14 350-363 90-103 (147)
141 cd05787 LbH_eIF2B_epsilon eIF- 99.4 1.4E-12 3.1E-17 93.1 9.1 64 223-287 2-65 (79)
142 PRK11132 cysE serine acetyltra 99.4 6.7E-13 1.5E-17 115.2 8.2 50 296-352 194-243 (273)
143 cd03356 LbH_G1P_AT_C_like Left 99.4 2.2E-12 4.7E-17 92.1 9.5 65 222-287 1-65 (79)
144 cd03356 LbH_G1P_AT_C_like Left 99.4 2.7E-12 5.9E-17 91.6 10.0 78 240-323 1-78 (79)
145 TIGR03308 phn_thr-fam phosphon 99.4 6.4E-12 1.4E-16 106.0 12.3 117 210-328 10-141 (204)
146 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 1.5E-11 3.2E-16 106.5 14.2 61 272-335 224-288 (341)
147 cd05825 LbH_wcaF_like wcaF-lik 99.4 4.6E-12 9.9E-17 95.9 9.4 46 311-379 54-99 (107)
148 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 6E-12 1.3E-16 90.1 9.6 78 241-325 2-79 (81)
149 COG0110 WbbJ Acetyltransferase 99.4 4.8E-12 1E-16 106.7 10.5 46 312-380 123-168 (190)
150 cd04651 LbH_G1P_AT_C Glucose-1 99.3 1.2E-11 2.6E-16 92.9 10.8 77 227-311 2-78 (104)
151 cd05787 LbH_eIF2B_epsilon eIF- 99.3 9E-12 2E-16 88.9 9.7 78 241-324 2-79 (79)
152 COG1045 CysE Serine acetyltran 99.3 5.5E-12 1.2E-16 101.6 8.8 28 347-379 135-162 (194)
153 PLN02694 serine O-acetyltransf 99.3 4.9E-12 1.1E-16 109.8 9.0 100 220-351 160-261 (294)
154 TIGR01172 cysE serine O-acetyl 99.3 8.8E-12 1.9E-16 101.5 9.0 43 314-379 114-156 (162)
155 PRK10191 putative acyl transfe 99.3 1.6E-11 3.6E-16 97.1 9.2 30 222-251 43-74 (146)
156 cd05824 LbH_M1P_guanylylT_C Ma 99.3 2.6E-11 5.7E-16 86.6 9.3 75 243-323 4-79 (80)
157 PLN02739 serine acetyltransfer 99.3 7.9E-12 1.7E-16 110.6 7.7 25 349-378 275-299 (355)
158 cd05635 LbH_unknown Uncharacte 99.3 6.1E-11 1.3E-15 88.2 11.3 84 219-310 10-94 (101)
159 COG2171 DapD Tetrahydrodipicol 99.3 2.6E-11 5.7E-16 102.3 9.7 63 273-335 157-222 (271)
160 KOG4750|consensus 99.3 1.5E-11 3.3E-16 100.1 7.9 43 315-380 202-244 (269)
161 KOG1462|consensus 99.3 1.3E-11 2.9E-16 108.7 8.1 82 217-305 331-412 (433)
162 cd04651 LbH_G1P_AT_C Glucose-1 99.3 5.2E-11 1.1E-15 89.4 9.6 80 245-332 2-81 (104)
163 PLN02917 CMP-KDO synthetase 99.2 4.7E-10 1E-14 100.3 17.3 192 1-199 74-287 (293)
164 PRK09527 lacA galactoside O-ac 99.2 9.4E-11 2E-15 98.2 11.9 50 295-351 131-180 (203)
165 PRK09677 putative lipopolysacc 99.2 1.4E-10 3.1E-15 97.2 12.6 125 219-350 42-178 (192)
166 PRK10502 putative acyl transfe 99.2 1.1E-10 2.5E-15 96.9 11.7 105 214-328 51-157 (182)
167 PRK11132 cysE serine acetyltra 99.2 1.3E-10 2.8E-15 101.1 12.1 43 314-379 194-236 (273)
168 PLN02357 serine acetyltransfer 99.2 3.7E-11 8.1E-16 107.3 8.6 96 238-351 226-327 (360)
169 PLN02694 serine O-acetyltransf 99.2 1E-10 2.2E-15 101.6 10.8 28 69-96 42-71 (294)
170 TIGR03535 DapD_actino 2,3,4,5- 99.2 2.2E-10 4.7E-15 98.9 12.2 61 271-334 198-262 (319)
171 cd03349 LbH_XAT Xenobiotic acy 99.2 7.8E-11 1.7E-15 93.7 8.3 26 348-378 90-115 (145)
172 cd03357 LbH_MAT_GAT Maltose O- 99.2 3.3E-10 7.2E-15 93.2 12.3 102 238-351 62-167 (169)
173 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.6E-10 3.4E-15 100.3 10.6 100 212-313 176-284 (341)
174 COG1208 GCD1 Nucleoside-diphos 99.2 1.7E-10 3.8E-15 106.1 11.2 86 233-331 256-342 (358)
175 TIGR01172 cysE serine O-acetyl 99.2 2E-10 4.3E-15 93.5 10.1 35 295-329 113-147 (162)
176 PRK10191 putative acyl transfe 99.2 3E-10 6.6E-15 89.9 10.4 32 297-328 94-125 (146)
177 PRK05293 glgC glucose-1-phosph 99.2 2.3E-10 4.9E-15 107.3 11.3 87 238-333 276-362 (380)
178 cd04647 LbH_MAT_like Maltose O 99.2 4.3E-10 9.2E-15 85.6 10.7 35 294-328 57-91 (109)
179 cd03354 LbH_SAT Serine acetylt 99.1 2.9E-10 6.2E-15 85.1 8.8 35 294-328 53-87 (101)
180 cd05825 LbH_wcaF_like wcaF-lik 99.1 9.7E-10 2.1E-14 83.1 11.1 51 294-351 55-105 (107)
181 COG2171 DapD Tetrahydrodipicol 99.1 3.2E-10 7E-15 95.8 9.0 32 256-287 157-197 (271)
182 PLN02241 glucose-1-phosphate a 99.1 4.4E-10 9.5E-15 106.9 11.0 71 214-287 310-399 (436)
183 TIGR03535 DapD_actino 2,3,4,5- 99.1 5.4E-10 1.2E-14 96.5 10.3 57 226-289 153-210 (319)
184 PLN02357 serine acetyltransfer 99.1 1E-09 2.2E-14 98.2 11.5 85 220-312 226-313 (360)
185 cd04647 LbH_MAT_like Maltose O 99.1 7.4E-10 1.6E-14 84.3 8.6 35 298-332 55-89 (109)
186 PLN02739 serine acetyltransfer 99.1 7.2E-10 1.6E-14 98.3 9.3 50 296-352 258-307 (355)
187 cd03354 LbH_SAT Serine acetylt 99.1 2.1E-09 4.5E-14 80.5 10.2 17 271-287 53-69 (101)
188 COG1045 CysE Serine acetyltran 99.0 7.6E-10 1.6E-14 89.4 7.9 104 216-351 63-168 (194)
189 cd05635 LbH_unknown Uncharacte 99.0 2.3E-09 4.9E-14 79.7 9.4 75 213-289 22-96 (101)
190 PRK10092 maltose O-acetyltrans 99.0 3.2E-09 6.9E-14 87.9 10.5 118 219-351 58-178 (183)
191 PRK02862 glgC glucose-1-phosph 99.0 1.6E-09 3.5E-14 102.7 9.7 79 250-336 303-400 (429)
192 cd00208 LbetaH Left-handed par 99.0 2.8E-09 6.1E-14 75.6 8.3 33 296-328 45-77 (78)
193 TIGR01208 rmlA_long glucose-1- 98.9 5.1E-09 1.1E-13 97.1 10.7 90 231-328 247-337 (353)
194 cd00208 LbetaH Left-handed par 98.9 1E-08 2.3E-13 72.6 9.0 74 222-308 2-75 (78)
195 PRK15460 cpsB mannose-1-phosph 98.9 3.2E-08 7E-13 93.8 14.2 191 1-194 40-288 (478)
196 COG0836 {ManC} Mannose-1-phosp 98.9 6.5E-08 1.4E-12 84.3 13.7 192 1-194 36-280 (333)
197 PRK00844 glgC glucose-1-phosph 98.9 9.5E-09 2.1E-13 97.0 9.2 71 217-289 312-382 (407)
198 cd03349 LbH_XAT Xenobiotic acy 98.9 2.7E-08 5.9E-13 79.2 10.3 36 293-328 71-106 (145)
199 KOG3121|consensus 98.8 9.1E-09 2E-13 77.7 6.0 47 272-318 84-130 (184)
200 KOG4042|consensus 98.8 1.9E-08 4.2E-13 76.6 6.7 103 220-328 8-128 (190)
201 TIGR02091 glgC glucose-1-phosp 98.8 4.1E-08 8.8E-13 91.4 10.1 80 242-323 281-360 (361)
202 COG0110 WbbJ Acetyltransferase 98.7 1.3E-07 2.8E-12 79.7 11.5 50 294-350 123-172 (190)
203 PRK00725 glgC glucose-1-phosph 98.7 6.4E-08 1.4E-12 91.8 10.6 73 253-327 325-397 (425)
204 TIGR02092 glgD glucose-1-phosp 98.7 5E-08 1.1E-12 91.1 9.7 80 243-331 277-356 (369)
205 COG0448 GlgC ADP-glucose pyrop 98.7 6.7E-08 1.4E-12 87.0 9.8 83 241-332 282-364 (393)
206 COG4750 LicC CTP:phosphocholin 98.7 4.4E-07 9.5E-12 72.8 13.2 136 1-153 33-168 (231)
207 KOG3121|consensus 98.7 4.9E-08 1.1E-12 73.8 7.3 62 256-328 85-146 (184)
208 TIGR00466 kdsB 3-deoxy-D-manno 98.6 3.7E-06 7.9E-11 73.3 17.6 185 1-192 26-237 (238)
209 COG4801 Predicted acyltransfer 98.6 6.5E-07 1.4E-11 73.8 10.8 86 242-332 20-105 (277)
210 KOG4750|consensus 98.6 1.7E-07 3.7E-12 76.8 7.0 71 274-351 176-249 (269)
211 KOG1460|consensus 98.6 2.8E-07 6E-12 79.0 8.5 121 235-379 285-406 (407)
212 cd02513 CMP-NeuAc_Synthase CMP 98.5 5.4E-06 1.2E-10 71.6 15.2 175 1-195 28-219 (223)
213 TIGR02353 NRPS_term_dom non-ri 98.5 4.3E-07 9.4E-12 90.7 8.8 15 273-287 617-631 (695)
214 TIGR02353 NRPS_term_dom non-ri 98.5 8.4E-07 1.8E-11 88.7 10.1 53 294-351 159-211 (695)
215 KOG1322|consensus 98.3 1.1E-06 2.4E-11 76.6 5.6 106 238-379 264-370 (371)
216 TIGR00453 ispD 2-C-methyl-D-er 98.3 1.1E-05 2.3E-10 69.5 11.3 178 1-196 29-214 (217)
217 KOG4042|consensus 98.3 1.7E-06 3.6E-11 66.2 5.4 92 216-312 22-130 (190)
218 PF12804 NTP_transf_3: MobA-li 98.3 6.7E-06 1.4E-10 67.1 9.2 94 1-102 26-121 (160)
219 TIGR03310 matur_ygfJ molybdenu 98.2 2.3E-05 4.9E-10 65.7 12.5 93 1-98 27-121 (188)
220 COG4801 Predicted acyltransfer 98.2 1.5E-05 3.2E-10 65.9 9.4 71 255-331 16-86 (277)
221 COG1212 KdsB CMP-2-keto-3-deox 98.2 0.00033 7.2E-09 58.3 17.0 192 1-199 30-242 (247)
222 TIGR00454 conserved hypothetic 98.1 2E-05 4.3E-10 65.6 9.2 92 1-100 29-122 (183)
223 PRK00155 ispD 2-C-methyl-D-ery 98.1 0.00012 2.7E-09 63.3 13.5 182 1-199 33-222 (227)
224 PRK09382 ispDF bifunctional 2- 98.0 0.00019 4.1E-09 66.5 15.2 174 1-199 35-212 (378)
225 cd02516 CDP-ME_synthetase CDP- 98.0 6.2E-05 1.3E-09 64.8 11.0 179 1-193 30-216 (218)
226 TIGR03584 PseF pseudaminic aci 98.0 0.00075 1.6E-08 58.1 17.1 176 1-196 26-217 (222)
227 cd04182 GT_2_like_f GT_2_like_ 97.9 9.9E-05 2.2E-09 61.6 9.3 92 1-97 28-121 (186)
228 PF00132 Hexapep: Bacterial tr 97.9 2.6E-05 5.5E-10 45.9 3.9 32 297-328 3-34 (36)
229 PF14602 Hexapep_2: Hexapeptid 97.8 4E-05 8.7E-10 44.1 4.0 29 298-328 4-32 (34)
230 COG2266 GTP:adenosylcobinamide 97.8 0.0014 3.1E-08 52.5 13.9 82 1-93 29-112 (177)
231 COG2068 Uncharacterized MobA-r 97.7 0.0015 3.2E-08 53.9 13.5 159 1-199 33-197 (199)
232 PF07959 Fucokinase: L-fucokin 97.4 0.0015 3.2E-08 61.6 11.0 46 244-289 273-318 (414)
233 PRK13412 fkp bifunctional fuco 97.3 0.002 4.4E-08 65.9 11.7 201 71-289 154-389 (974)
234 cd04180 UGPase_euk_like Eukary 97.2 0.00011 2.3E-09 65.0 0.6 129 1-131 33-175 (266)
235 PRK13385 2-C-methyl-D-erythrit 97.1 0.012 2.6E-07 51.0 12.8 183 1-198 32-222 (230)
236 cd02503 MobA MobA catalyzes th 97.1 0.0028 6E-08 52.7 8.3 80 1-92 28-109 (181)
237 TIGR03202 pucB xanthine dehydr 97.0 0.0042 9.1E-08 52.1 8.4 91 1-95 28-124 (190)
238 TIGR02665 molyb_mobA molybdopt 96.9 0.0077 1.7E-07 50.2 9.1 87 1-96 29-117 (186)
239 PRK00317 mobA molybdopterin-gu 96.9 0.0069 1.5E-07 50.9 8.7 84 1-95 32-117 (193)
240 cd00761 Glyco_tranf_GTA_type G 96.3 0.061 1.3E-06 42.3 10.6 90 1-93 11-103 (156)
241 COG1083 NeuA CMP-N-acetylneura 96.3 0.11 2.3E-06 43.4 11.5 178 1-199 30-222 (228)
242 TIGR03552 F420_cofC 2-phospho- 96.2 0.017 3.6E-07 48.7 6.8 84 1-93 32-117 (195)
243 cd02518 GT2_SpsF SpsF is a gly 96.2 0.037 8E-07 48.0 9.2 91 1-100 26-121 (233)
244 PRK14489 putative bifunctional 96.0 0.034 7.4E-07 51.8 8.7 89 1-98 34-124 (366)
245 PRK02726 molybdopterin-guanine 95.7 0.083 1.8E-06 44.6 9.0 83 1-94 35-120 (200)
246 PRK00560 molybdopterin-guanine 95.2 0.42 9.2E-06 40.2 11.7 74 1-88 37-112 (196)
247 PF00535 Glycos_transf_2: Glyc 94.8 0.26 5.6E-06 39.4 9.1 99 2-103 13-114 (169)
248 PLN02728 2-C-methyl-D-erythrit 93.9 0.3 6.5E-06 42.9 7.9 177 1-197 54-242 (252)
249 PF07959 Fucokinase: L-fucokin 93.4 0.21 4.6E-06 47.2 6.5 81 69-153 53-156 (414)
250 COG0746 MobA Molybdopterin-gua 92.3 0.77 1.7E-05 38.4 7.7 82 1-94 31-114 (192)
251 PRK00576 molybdopterin-guanine 91.8 1 2.3E-05 37.1 8.0 84 1-95 17-103 (178)
252 cd04179 DPM_DPG-synthase_like 90.9 3.5 7.7E-05 33.6 10.5 98 2-102 12-114 (185)
253 cd06423 CESA_like CESA_like is 90.6 4.1 9E-05 32.4 10.5 92 2-95 12-106 (180)
254 cd04188 DPG_synthase DPG_synth 89.7 3.8 8.3E-05 34.5 9.9 97 3-101 13-116 (211)
255 cd04186 GT_2_like_c Subfamily 88.9 5.8 0.00012 31.5 10.0 88 2-95 12-102 (166)
256 PF02348 CTP_transf_3: Cytidyl 88.2 2.5 5.3E-05 36.0 7.6 91 1-98 26-120 (217)
257 cd06427 CESA_like_2 CESA_like_ 88.1 8.3 0.00018 33.3 11.1 99 2-102 16-119 (241)
258 cd04193 UDPGlcNAc_PPase UDPGlc 87.0 12 0.00027 34.1 11.6 150 1-153 48-254 (323)
259 cd04195 GT2_AmsE_like GT2_AmsE 85.2 13 0.00029 30.7 10.5 90 2-95 15-108 (201)
260 COG1920 Predicted nucleotidylt 84.3 21 0.00045 29.6 10.3 79 1-94 33-113 (210)
261 PRK14490 putative bifunctional 84.2 6 0.00013 37.0 8.5 80 1-91 202-283 (369)
262 cd06442 DPM1_like DPM1_like re 84.1 13 0.00028 31.4 10.1 96 2-100 12-111 (224)
263 PRK14500 putative bifunctional 82.6 6.4 0.00014 36.3 7.8 81 1-92 188-270 (346)
264 cd04187 DPM1_like_bac Bacteria 82.2 13 0.00027 30.3 9.0 82 15-100 30-112 (181)
265 cd02510 pp-GalNAc-T pp-GalNAc- 81.4 19 0.00041 32.3 10.5 94 2-97 14-113 (299)
266 cd02525 Succinoglycan_BP_ExoA 81.1 22 0.00048 30.4 10.6 95 2-100 15-114 (249)
267 cd06439 CESA_like_1 CESA_like_ 81.1 17 0.00036 31.5 9.8 89 2-95 44-137 (251)
268 cd06433 GT_2_WfgS_like WfgS an 81.1 17 0.00037 29.7 9.6 88 2-95 13-103 (202)
269 cd04184 GT2_RfbC_Mx_like Myxoc 80.3 17 0.00037 30.0 9.3 88 2-92 17-108 (202)
270 cd04196 GT_2_like_d Subfamily 79.4 23 0.00049 29.5 9.9 91 2-94 13-106 (214)
271 COG1861 SpsF Spore coat polysa 79.1 10 0.00023 32.1 7.1 86 1-99 30-124 (241)
272 cd06435 CESA_NdvC_like NdvC_li 77.5 18 0.0004 30.8 8.9 88 2-93 14-110 (236)
273 cd04185 GT_2_like_b Subfamily 77.4 28 0.00062 28.8 9.8 90 2-93 12-105 (202)
274 PLN02726 dolichyl-phosphate be 76.0 17 0.00036 31.5 8.2 84 16-101 42-127 (243)
275 cd06434 GT2_HAS Hyaluronan syn 75.6 27 0.00059 29.7 9.4 87 2-93 16-103 (235)
276 cd06421 CESA_CelA_like CESA_Ce 73.5 45 0.00097 28.2 10.2 89 2-94 17-111 (234)
277 PTZ00339 UDP-N-acetylglucosami 72.6 97 0.0021 30.1 15.0 152 1-153 139-349 (482)
278 cd04192 GT_2_like_e Subfamily 71.7 42 0.0009 28.2 9.6 93 2-97 12-112 (229)
279 PRK11204 N-glycosyltransferase 71.7 35 0.00075 32.4 9.8 91 2-95 69-162 (420)
280 cd06420 GT2_Chondriotin_Pol_N 70.5 34 0.00074 27.6 8.5 89 2-92 12-104 (182)
281 TIGR01556 rhamnosyltran L-rham 70.5 60 0.0013 28.7 10.6 89 2-96 10-102 (281)
282 PF04519 Bactofilin: Polymer-f 67.1 36 0.00079 24.8 7.1 7 352-358 89-95 (101)
283 PRK13412 fkp bifunctional fuco 66.8 9.8 0.00021 40.0 5.1 40 249-288 330-370 (974)
284 COG1216 Predicted glycosyltran 66.8 41 0.00089 30.3 8.8 96 3-101 19-118 (305)
285 COG1211 IspD 4-diphosphocytidy 66.0 41 0.00089 29.0 8.0 178 1-196 34-223 (230)
286 PRK10714 undecaprenyl phosphat 65.2 57 0.0012 29.8 9.4 82 16-100 40-122 (325)
287 cd06437 CESA_CaSu_A2 Cellulose 61.9 96 0.0021 26.3 9.9 86 2-91 16-111 (232)
288 cd02526 GT2_RfbF_like RfbF is 59.9 1.1E+02 0.0023 25.9 10.1 83 2-89 13-97 (237)
289 TIGR03111 glyc2_xrt_Gpos1 puta 59.9 97 0.0021 29.7 10.3 90 2-95 64-159 (439)
290 PRK14583 hmsR N-glycosyltransf 59.6 65 0.0014 30.9 9.1 91 2-95 90-183 (444)
291 TIGR02990 ectoine_eutA ectoine 59.5 1.1E+02 0.0025 26.5 9.7 83 5-91 111-203 (239)
292 PF01128 IspD: 2-C-methyl-D-er 59.4 75 0.0016 27.3 8.4 173 1-195 30-215 (221)
293 PLN02474 UTP--glucose-1-phosph 59.3 1.8E+02 0.0038 28.2 19.9 85 68-153 212-307 (469)
294 PRK10073 putative glycosyl tra 58.8 1.1E+02 0.0024 28.0 10.1 96 2-101 21-119 (328)
295 cd02520 Glucosylceramide_synth 57.1 1.1E+02 0.0024 25.2 9.6 89 2-92 16-111 (196)
296 PF04519 Bactofilin: Polymer-f 56.3 36 0.00079 24.8 5.4 17 261-277 36-52 (101)
297 COG1664 CcmA Integral membrane 56.2 1E+02 0.0022 24.5 8.9 7 352-358 110-116 (146)
298 PTZ00260 dolichyl-phosphate be 54.9 1.2E+02 0.0026 27.9 9.6 51 41-93 137-188 (333)
299 PF01983 CofC: Guanylyl transf 49.5 18 0.0004 30.8 3.2 79 1-92 33-113 (217)
300 COG1215 Glycosyltransferases, 48.4 1.4E+02 0.0029 28.3 9.4 93 2-97 70-167 (439)
301 PF01713 Smr: Smr domain; Int 46.9 70 0.0015 22.2 5.4 53 2-55 15-75 (83)
302 TIGR03469 HonB hopene-associat 45.6 1.9E+02 0.004 27.1 9.6 98 2-99 55-165 (384)
303 COG0381 WecB UDP-N-acetylgluco 44.0 50 0.0011 30.8 5.2 90 4-95 21-116 (383)
304 cd02511 Beta4Glucosyltransfera 43.6 2E+02 0.0044 24.3 10.1 83 2-94 15-98 (229)
305 PF13641 Glyco_tranf_2_3: Glyc 41.7 43 0.00092 28.3 4.4 90 2-96 16-115 (228)
306 PRK10018 putative glycosyl tra 40.9 2.6E+02 0.0057 24.9 11.3 88 2-94 20-112 (279)
307 COG3473 Maleate cis-trans isom 40.5 1.4E+02 0.003 25.3 6.7 81 5-90 109-200 (238)
308 cd02522 GT_2_like_a GT_2_like_ 39.9 2.2E+02 0.0047 23.6 10.7 85 2-96 14-101 (221)
309 TIGR03472 HpnI hopanoid biosyn 39.4 2.5E+02 0.0055 26.1 9.5 90 2-96 56-155 (373)
310 PF07302 AroM: AroM protein; 39.2 1.3E+02 0.0029 25.7 6.7 55 36-91 145-199 (221)
311 KOG2978|consensus 38.3 2.4E+02 0.0051 23.6 11.1 94 6-104 26-125 (238)
312 PF02633 Creatininase: Creatin 38.2 55 0.0012 28.3 4.5 46 1-46 87-135 (237)
313 cd06438 EpsO_like EpsO protein 36.3 2.3E+02 0.005 22.8 12.3 89 2-94 12-108 (183)
314 PRK11557 putative DNA-binding 35.9 3.1E+02 0.0066 24.2 9.8 89 5-103 121-209 (278)
315 PRK10481 hypothetical protein; 35.9 2.9E+02 0.0062 23.8 8.3 76 14-92 129-204 (224)
316 cd05005 SIS_PHI Hexulose-6-pho 35.0 2.5E+02 0.0054 22.8 8.9 87 2-103 23-109 (179)
317 TIGR02638 lactal_redase lactal 34.1 1.8E+02 0.0039 27.2 7.5 75 2-80 17-98 (379)
318 cd06913 beta3GnTL1_like Beta 1 32.2 3E+02 0.0064 22.9 9.7 92 2-96 12-113 (219)
319 PF04273 DUF442: Putative phos 31.7 2.2E+02 0.0048 21.3 6.7 66 5-74 19-91 (110)
320 TIGR00288 conserved hypothetic 31.7 2.8E+02 0.006 22.4 9.3 88 2-103 43-136 (160)
321 cd01025 TOPRIM_recR TOPRIM_rec 31.6 1.6E+02 0.0035 22.1 5.4 43 2-44 45-89 (112)
322 PRK13915 putative glucosyl-3-p 31.1 4E+02 0.0087 24.1 9.2 49 51-101 100-151 (306)
323 PF01936 NYN: NYN domain; Int 30.4 1.4E+02 0.0029 23.1 5.3 31 69-103 96-126 (146)
324 PF10111 Glyco_tranf_2_2: Glyc 30.2 3.9E+02 0.0084 23.6 8.8 38 51-90 73-111 (281)
325 cd08189 Fe-ADH5 Iron-containin 30.1 2.5E+02 0.0054 26.2 7.8 74 2-79 14-94 (374)
326 PRK11498 bcsA cellulose syntha 29.8 4.6E+02 0.01 27.7 10.0 72 16-95 294-367 (852)
327 PF09837 DUF2064: Uncharacteri 29.6 65 0.0014 24.6 3.1 85 5-95 1-88 (122)
328 COG1454 EutG Alcohol dehydroge 28.8 3.9E+02 0.0085 25.1 8.5 85 2-91 17-107 (377)
329 PF00583 Acetyltransf_1: Acety 27.8 92 0.002 21.0 3.5 34 1-34 46-79 (83)
330 PRK10063 putative glycosyl tra 27.7 4E+02 0.0088 23.0 11.7 89 2-95 16-109 (248)
331 cd06436 GlcNAc-1-P_transferase 26.5 3.5E+02 0.0077 22.0 10.1 89 2-92 12-114 (191)
332 cd08176 LPO Lactadehyde:propan 26.4 3E+02 0.0064 25.8 7.6 74 2-79 16-96 (377)
333 cd08551 Fe-ADH iron-containing 26.3 3.3E+02 0.0071 25.3 7.9 76 2-81 11-93 (370)
334 cd08190 HOT Hydroxyacid-oxoaci 26.1 3.2E+02 0.007 26.0 7.8 74 2-79 11-91 (414)
335 cd00897 UGPase_euk Eukaryotic 25.9 4.8E+02 0.01 23.6 8.4 85 68-153 136-231 (300)
336 cd08192 Fe-ADH7 Iron-containin 25.2 3.6E+02 0.0077 25.1 7.9 75 2-80 12-93 (370)
337 cd08194 Fe-ADH6 Iron-containin 24.9 4E+02 0.0086 24.9 8.1 73 3-79 12-91 (375)
338 TIGR03030 CelA cellulose synth 24.9 6.5E+02 0.014 26.0 10.2 52 42-95 203-256 (713)
339 cd08182 HEPD Hydroxyethylphosp 24.8 4E+02 0.0086 24.8 8.1 74 2-79 11-88 (367)
340 cd08188 Fe-ADH4 Iron-containin 24.0 3.7E+02 0.0079 25.1 7.7 74 3-80 17-97 (377)
341 PF13685 Fe-ADH_2: Iron-contai 23.3 1.5E+02 0.0031 26.1 4.5 86 2-93 7-98 (250)
342 PF13880 Acetyltransf_13: ESCO 22.9 1.3E+02 0.0028 20.5 3.2 61 12-74 6-69 (70)
343 KOG2638|consensus 22.6 1E+02 0.0022 29.0 3.4 37 64-101 233-270 (498)
344 PRK09860 putative alcohol dehy 22.0 3.3E+02 0.0071 25.6 6.9 73 2-78 19-98 (383)
345 cd07766 DHQ_Fe-ADH Dehydroquin 21.9 4.2E+02 0.0091 24.1 7.6 84 2-92 11-100 (332)
346 cd08185 Fe-ADH1 Iron-containin 21.8 5.5E+02 0.012 24.0 8.4 73 2-79 14-94 (380)
347 cd08181 PPD-like 1,3-propanedi 21.6 6.5E+02 0.014 23.3 8.8 72 3-79 15-94 (357)
348 TIGR00236 wecB UDP-N-acetylglu 21.5 2E+02 0.0043 26.5 5.4 74 2-79 16-96 (365)
349 cd08193 HVD 5-hydroxyvalerate 21.4 4E+02 0.0087 24.9 7.4 71 2-76 14-90 (376)
350 PRK10624 L-1,2-propanediol oxi 21.1 4.3E+02 0.0092 24.8 7.5 74 2-79 18-98 (382)
351 TIGR00615 recR recombination p 20.8 2.7E+02 0.0059 23.3 5.4 45 2-46 123-169 (195)
352 PF15632 ATPgrasp_Ter: ATP-gra 20.7 2.2E+02 0.0048 26.1 5.3 42 2-46 55-96 (329)
353 cd05013 SIS_RpiR RpiR-like pro 20.7 3.7E+02 0.008 20.1 9.3 89 2-100 3-91 (139)
No 1
>KOG1322|consensus
Probab=100.00 E-value=1.4e-55 Score=374.26 Aligned_cols=287 Identities=56% Similarity=0.985 Sum_probs=265.8
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHH-ccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCC-cEEEEeCC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL-TVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQE-PFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l-~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~-~~lv~~gD 78 (380)
||.|++++|.++|+++|++.++|.++++..++ +.+...+++++.++.|.+++||++.+..+++++-...+ +|+|++||
T Consensus 42 mI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsD 121 (371)
T KOG1322|consen 42 MILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSD 121 (371)
T ss_pred hhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCC
Confidence 79999999999999999999999988554444 44567789999999999999999999999999854333 79999999
Q ss_pred cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-CCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164 79 IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP 157 (380)
Q Consensus 79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~ 157 (380)
+++++|+++|+++|++++++.|++.+++++|++||++..|+ +++|.+|.|||.++.++-+++|+|+|+|++++++...+
T Consensus 122 vi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~p 201 (371)
T KOG1322|consen 122 VICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRP 201 (371)
T ss_pred eeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhhcc
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999998888
Q ss_pred CCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECC
Q psy9164 158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGP 237 (380)
Q Consensus 158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~ 237 (380)
.+++.+++|.+++..+++++.++|||.|+|+|.+|+.+...+++..+...+.++.+++.+.+++.+++.+.+|++|.|++
T Consensus 202 tSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~ 281 (371)
T KOG1322|consen 202 TSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGP 281 (371)
T ss_pred cchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECC
Confidence 89999999999999999999999999999999999999999999998887778888899999999999999999999999
Q ss_pred CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164 238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 238 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i 287 (380)
+++||++|+|++++.+.+|.+..+..++.++.+..+++|.++.||.+++|
T Consensus 282 ~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~i 331 (371)
T KOG1322|consen 282 NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARI 331 (371)
T ss_pred CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEE
Confidence 99999999999999999999999999998888888888888888777655
No 2
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-48 Score=341.81 Aligned_cols=363 Identities=24% Similarity=0.396 Sum_probs=287.8
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD~ 79 (380)
|++|+|+.+...+.+++.++++|.++++++.+.+. -.+.|..|.+++||++|+++|++++. +.++++||++||.
T Consensus 32 Ml~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~ 106 (460)
T COG1207 32 MLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDV 106 (460)
T ss_pred HHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCc
Confidence 79999999999999999999999999999999862 15788999999999999999999993 3355799999998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHHhh-
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVLDR- 152 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l~~- 152 (380)
++...|+.+++.|...++.++++....++|.+||++..+++++|..|+|... +.....+++|+|+|+...|..
T Consensus 107 PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~ 186 (460)
T COG1207 107 PLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRA 186 (460)
T ss_pred ccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHH
Confidence 6667799999999999999999999999999999999999999999998633 456688999999999886543
Q ss_pred c---cCCCCCccc---chhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhcccCc----ccc-cCCCccc
Q psy9164 153 I---EIKPTSIEK---EIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRP----KLL-KEGDGIV 218 (380)
Q Consensus 153 l---~~~~~~~~~---~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~~~----~~~-~~~~~i~ 218 (380)
| ..+..+-++ |++..+...+ ++.++...++ ...+++...+.++.+.+..+....+. ..+ +....|.
T Consensus 187 L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~ 266 (460)
T COG1207 187 LPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIR 266 (460)
T ss_pred HHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEc
Confidence 3 223222232 3455555554 6667766654 46667766666665555544432210 011 1223455
Q ss_pred cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEE
Q psy9164 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII 298 (380)
Q Consensus 219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~i 298 (380)
..+.|++++.|.+++.|..++.||++|+||++|.|.+|.|++++.|..+|+++++.++++|.|||++++. +++.+
T Consensus 267 ~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LR-----Pg~~L 341 (460)
T COG1207 267 GDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLR-----PGAVL 341 (460)
T ss_pred CcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccC-----CcCcc
Confidence 6677777777777777777889999999999999999999999999999999999999999999999995 47888
Q ss_pred CccceeCcceEEccceEECCCe-----------EECcceEEcCCeeecc--------eeecCc-----ceeecceeEecC
Q psy9164 299 GWKCVVGQWVRMENITVLGEDV-----------IVQDELYVNGGQVLPH--------KSIGSS-----LHMLGEDVIVQD 354 (380)
Q Consensus 299 g~~~~ig~~~~i~~~~~ig~~~-----------~ig~~~~i~~~~v~~~--------~~i~~~-----~~~~~~~v~i~~ 354 (380)
++++.||++|.+++ +.||+++ .||+++.||+|++--+ +.||++ .+.+.+||+||+
T Consensus 342 ~~~~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd 420 (460)
T COG1207 342 GADVHIGNFVEVKK-ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGD 420 (460)
T ss_pred cCCCeEeeeEEEec-ccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecC
Confidence 99999999999876 5566554 5688888888884322 345543 345577999999
Q ss_pred ceEEeceeeeccccccCCCCCCCcc
Q psy9164 355 ELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 355 ~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+++||+||+ +|+|||++++.
T Consensus 421 ~a~iaAGSt-----IT~DVp~~aLa 440 (460)
T COG1207 421 GATIAAGST-----ITKDVPEGALA 440 (460)
T ss_pred CcEEcccce-----EcccCCCCcee
Confidence 999999999 99999999875
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-46 Score=339.52 Aligned_cols=309 Identities=38% Similarity=0.656 Sum_probs=265.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|++++++.++|+.+++++|+.+ ...+++++.|+.+.+++||+++++++.+++. .++|++++||++
T Consensus 34 ii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d-~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~--~~~f~v~~GDv~ 110 (358)
T COG1208 34 LIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLG--GDDFLVLNGDVL 110 (358)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc-ccccCCceEEEecCCcCccHHHHHHHHHhcC--CCcEEEEECCee
Confidence 6999999999999999999999999999999988 4567899999999999999999999999995 389999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCC-CceeEEEeCCC--CCCCCeEEEEEEEeCHhHHhhcc-CC
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH-GCIESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIE-IK 156 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~-~~v~~~~ek~~--~~~~~~~~~giyi~~~~~l~~l~-~~ 156 (380)
++.|++.++++|+++.+.+|+...+.+++..||.+..+++ +++.+|.|||. ...++++++|+|+|++++|+.+. ..
T Consensus 111 ~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~ 190 (358)
T COG1208 111 TDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGE 190 (358)
T ss_pred eccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCC
Confidence 9999999999999998888999988888889999988744 59999999994 66789999999999999999775 45
Q ss_pred CCCcccchhhhhhcCCc-EEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccc-------cCCCccccceeeCCCCE
Q psy9164 157 PTSIEKEIFPLMSKEKQ-LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLL-------KEGDGIVGNVLVDPTAT 228 (380)
Q Consensus 157 ~~~~~~~il~~l~~~~~-i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~-------~~~~~i~~~~~i~~~~~ 228 (380)
..+++.+++|.++++++ ++++.+.++|.++++|++|.++++..+........... .. ..+.+++++++++.
T Consensus 191 ~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~ 269 (358)
T COG1208 191 RFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAK 269 (358)
T ss_pred cccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCE
Confidence 66777789999999997 99999999999999999999999888864433211111 12 56789999999999
Q ss_pred ECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcce
Q psy9164 229 IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWV 308 (380)
Q Consensus 229 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~ 308 (380)
|++++.|+++++||++|.|++++.|.+|+|+++|.|++++++.+++||++|.||+++ . +|+ +.+|.++
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----------i~d-~~~g~~~ 337 (358)
T COG1208 270 IGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----------IGD-VVIGINS 337 (358)
T ss_pred ECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----------ecc-eEecCce
Confidence 999999999999999999999999999999999999999999999999999999811 1 566 6666666
Q ss_pred EEccceEECCCeEECcc
Q psy9164 309 RMENITVLGEDVIVQDE 325 (380)
Q Consensus 309 ~i~~~~~ig~~~~ig~~ 325 (380)
.+.++++++++++++.+
T Consensus 338 ~i~~g~~~~~~~~~~~~ 354 (358)
T COG1208 338 EILPGVVVGPGSVVESG 354 (358)
T ss_pred EEcCceEeCCCccccCc
Confidence 66665655555554443
No 4
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.1e-45 Score=348.97 Aligned_cols=362 Identities=22% Similarity=0.359 Sum_probs=279.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|++++++++++..+++.+++.+. ..+.+..+++.+||+++++.+++++.+..++|++++||.
T Consensus 33 li~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p 107 (459)
T PRK14355 33 MVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVP 107 (459)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCcc
Confidence 68999999999999999999999999999999752 145566678889999999999999953346799999997
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHH-hhc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVL-DRI 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l-~~l 153 (380)
+.+.+++++++.|++.++.++++..+.+++..|+.+.+|+++++.++.|||.. ..++++++|+|+|+++.+ +.+
T Consensus 108 ~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l 187 (459)
T PRK14355 108 LLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAI 187 (459)
T ss_pred CcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHH
Confidence 56788999999998888888888888888888999888888999999987632 134789999999999864 444
Q ss_pred cC---C---CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc----CcccccCCC-cccc
Q psy9164 154 EI---K---PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK----RPKLLKEGD-GIVG 219 (380)
Q Consensus 154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~----~~~~~~~~~-~i~~ 219 (380)
+. . ......++++.+++++ +++++.+.++ |.++++|++|++++.+++...... ....+.+.+ .+.+
T Consensus 188 ~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~ 267 (459)
T PRK14355 188 GRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDR 267 (459)
T ss_pred HHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECC
Confidence 31 1 1112346889998886 6999999887 999999999999977555443221 122344443 5788
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
++.|++++.|+++|.|+++++||++|.|++++.|.+++||++|.|++++.+.+++|++++.||+++.+.+ ++.++
T Consensus 268 ~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~-----~~~i~ 342 (459)
T PRK14355 268 GVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP-----GTELS 342 (459)
T ss_pred CeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECC-----CCEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999998854 44445
Q ss_pred ccceeCcceE-----------EccceEECCCeEECcceEEcCCeee--------------cceeecCcceeecceeEecC
Q psy9164 300 WKCVVGQWVR-----------MENITVLGEDVIVQDELYVNGGQVL--------------PHKSIGSSLHMLGEDVIVQD 354 (380)
Q Consensus 300 ~~~~ig~~~~-----------i~~~~~ig~~~~ig~~~~i~~~~v~--------------~~~~i~~~~~~~~~~v~i~~ 354 (380)
+++.||+++. +.+.+.+| ++.||+++.||++++. .+..||.++. +.++++||+
T Consensus 343 ~~~~ig~~~~~~~~~ig~~~~~~~~~~ig-~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~-i~~~~~ig~ 420 (459)
T PRK14355 343 AHVKIGNFVETKKIVMGEGSKASHLTYLG-DATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQ-FVAPVTVGR 420 (459)
T ss_pred CCCEECCCccccCCEECCCceeeeecccc-CCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCE-EeCCcEECC
Confidence 5555544433 22222221 2344444444444322 2223444433 456789999
Q ss_pred ceEEeceeeeccccccCCCCCCCcc
Q psy9164 355 ELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 355 ~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+++|+++++ |++|+|+++++
T Consensus 421 ~~~i~a~s~-----v~~~v~~~~~~ 440 (459)
T PRK14355 421 NSLIAAGTT-----VTKDVPPDSLA 440 (459)
T ss_pred CCEECCCCE-----EcccCCCCcEE
Confidence 999999999 99999999886
No 5
>KOG1460|consensus
Probab=100.00 E-value=4.7e-45 Score=305.12 Aligned_cols=289 Identities=34% Similarity=0.665 Sum_probs=261.2
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD 78 (380)
||+|.|++|.+. |+.+|+++--|..+.+.+|++.-...+.+.++|..++.++||++.|++.++.+.. ..+.+.++++|
T Consensus 37 mI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaD 116 (407)
T KOG1460|consen 37 MIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNAD 116 (407)
T ss_pred hhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecc
Confidence 799999999995 8999999988999999999988666778889999999999999999999998753 46779999999
Q ss_pred cccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEEC-CCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC
Q psy9164 79 IICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYN-EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI 155 (380)
Q Consensus 79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~ 155 (380)
+-++++|++|++.|+..+..+|++..++ +++..||.+..| .++++++++|||..+.++.+++|+|+|++++|+.+.+
T Consensus 117 VCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~ 196 (407)
T KOG1460|consen 117 VCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAE 196 (407)
T ss_pred eecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHH
Confidence 9999999999999999999999999886 456889999988 7899999999999999999999999999999876631
Q ss_pred --------------------C---CCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCccccc
Q psy9164 156 --------------------K---PTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK 212 (380)
Q Consensus 156 --------------------~---~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~ 212 (380)
. .-.++.|+++.|+.++++|+|..+++|..+.++...+.+++.+|++++...+.++.
T Consensus 197 v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~La 276 (407)
T KOG1460|consen 197 VYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLA 276 (407)
T ss_pred HHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhc
Confidence 1 12356789999999999999999999999999999999999999999988887776
Q ss_pred CC--C--ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEe
Q psy9164 213 EG--D--GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME 288 (380)
Q Consensus 213 ~~--~--~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~ 288 (380)
.+ . .|.++++|+|++++.+.++||||++||++++||+++++++|+|-+++.|.+++.+-+|+||..+.||.++++.
T Consensus 277 k~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 277 KGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVE 356 (407)
T ss_pred CCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeec
Confidence 33 3 4889999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred e
Q psy9164 289 N 289 (380)
Q Consensus 289 ~ 289 (380)
.
T Consensus 357 ~ 357 (407)
T KOG1460|consen 357 G 357 (407)
T ss_pred c
Confidence 3
No 6
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=312.89 Aligned_cols=298 Identities=24% Similarity=0.409 Sum_probs=250.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcE-----EEEee-------cCCCCCCchHHHHhHHhhCCC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGIS-----LVFSH-------ENEPLGTAGPLALAKDILNKS 68 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~-----i~~~~-------~~~~~gt~~al~~a~~~i~~~ 68 (380)
||+++|++|.++|+++|.|+++|++..+.+|++. +..|+.. +.+.. +.+..||++|+++...++.+.
T Consensus 39 iIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~-G~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~ 117 (393)
T COG0448 39 IIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR-GWPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRS 117 (393)
T ss_pred EEeEEcccccccCCCeEEEEeccchhHHHHHhhC-CCccccccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhc
Confidence 5789999999999999999999999999999988 4455321 22221 136779999999988888543
Q ss_pred -CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCC-CCCC-eEEEEEE
Q psy9164 69 -QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQE-FVSN-KINAGMY 143 (380)
Q Consensus 69 -~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~-~~~~-~~~~giy 143 (380)
.+.+|++.||+++++|+++|++.|.++++++|+++.+++ +++.||.+..|+++++++|.|||.+ ...+ ++++|+|
T Consensus 118 ~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiY 197 (393)
T COG0448 118 DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIY 197 (393)
T ss_pred CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeE
Confidence 567999999999999999999999999999999999875 5788999999999999999999997 5554 8999999
Q ss_pred EeCHhHHhhc-c------CCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCc
Q psy9164 144 IFNPSVLDRI-E------IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG 216 (380)
Q Consensus 144 i~~~~~l~~l-~------~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 216 (380)
+|++++|..+ . ....+|..+++|.+.+++.+++|++.+||.+++|.++|++++..+++.... -..+.+.+.
T Consensus 198 If~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~--~~lyd~~w~ 275 (393)
T COG0448 198 IFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPE--LNLYDRNWP 275 (393)
T ss_pred EEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCc--ccccCCCCc
Confidence 9999988554 2 223568889999999999999999999999999999999999988873221 234677888
Q ss_pred cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC 296 (380)
Q Consensus 217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~ 296 (380)
|.......|++++..+..+ .++.++.||.|.. .+.+|+++.+++|+++|.|.+|+|+++|.||++|.| .++
T Consensus 276 IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l------~~a 346 (393)
T COG0448 276 IYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVL------RRA 346 (393)
T ss_pred eeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEE------EEE
Confidence 9888888899999888887 4999999999965 899999999999999999999999999999999999 445
Q ss_pred EECccceeCcceEE
Q psy9164 297 IIGWKCVVGQWVRM 310 (380)
Q Consensus 297 ~ig~~~~ig~~~~i 310 (380)
+|.++|.|+++++|
T Consensus 347 IIDk~v~I~~g~~i 360 (393)
T COG0448 347 IIDKNVVIGEGVVI 360 (393)
T ss_pred EeCCCcEeCCCcEE
Confidence 55544444444433
No 7
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.2e-42 Score=331.77 Aligned_cols=368 Identities=19% Similarity=0.250 Sum_probs=271.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~ 79 (380)
||+|+|++|.++|++++++++++..+++++++.+. ...+.+..+++..||+++++.+.+++.. .+++|++++||.
T Consensus 34 li~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~ 109 (482)
T PRK14352 34 MLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDV 109 (482)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCe
Confidence 68999999999999999999999999999998652 1234556678889999999999999842 135699999997
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHhhc
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLDRI 153 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~~l 153 (380)
+...+++++++.|++.++.++++..+..++..||.+..++++++.+|.|||... ..+++++|+|+|+++.|..+
T Consensus 110 P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~ 189 (482)
T PRK14352 110 PLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSA 189 (482)
T ss_pred eccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHH
Confidence 456779999999998888888888888889999998888889999999998743 24678999999999998543
Q ss_pred -c---CC---CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhH------HHHHHHHHhhhcccCcccccC-CCccc
Q psy9164 154 -E---IK---PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDF------LKGMCLYLNSLRQKRPKLLKE-GDGIV 218 (380)
Q Consensus 154 -~---~~---~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~------~~a~~~~l~~~~~~~~~~~~~-~~~i~ 218 (380)
. .. ......|+++.+++++ +++++.+.++|.++++++.+ ..+++..+..+.+.....+.+ ...|.
T Consensus 190 ~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 269 (482)
T PRK14352 190 LARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWID 269 (482)
T ss_pred HHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEe
Confidence 2 11 1122357889998886 79999999999999988776 333333344333222222232 45677
Q ss_pred cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe-cceE
Q psy9164 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL-GECI 297 (380)
Q Consensus 219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~-~~~~ 297 (380)
++++|++++.|++++.|+++++||++|.|+++|.|.+++||++|.|+. +.+.+++|++++.||+++.+.+++.. .++.
T Consensus 270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ 348 (482)
T PRK14352 270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGK 348 (482)
T ss_pred CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCE
Confidence 889999999999999999999999999999999999999999999975 78888999999999988888542222 1222
Q ss_pred ECc-----cceeCcceEEcc-----ceEECCCeEECcceEEcCC-------eeecc-eeecCcceeecceeEecCceEEe
Q psy9164 298 IGW-----KCVVGQWVRMEN-----ITVLGEDVIVQDELYVNGG-------QVLPH-KSIGSSLHMLGEDVIVQDELYVN 359 (380)
Q Consensus 298 ig~-----~~~ig~~~~i~~-----~~~ig~~~~ig~~~~i~~~-------~v~~~-~~i~~~~~~~~~~v~i~~~~~i~ 359 (380)
+|. ++.|++++.+.+ +++||++|.||+++.+... +++++ .+||.+ +.+.++++||++++||
T Consensus 349 ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~-~~i~~~~~Ig~~~~ig 427 (482)
T PRK14352 349 LGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSD-TMFVAPVTVGDGAYTG 427 (482)
T ss_pred ECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCC-CEEeCCCEECCCcEEC
Confidence 221 122333333332 2345555555555554321 12222 234444 3345678999999999
Q ss_pred ceeeeccccccCCCCCCCcc
Q psy9164 360 GGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 360 ~~~v~p~~~v~~~vp~~~iv 379 (380)
+|++ |++|+|+++++
T Consensus 428 ags~-----v~~~v~~~~~~ 442 (482)
T PRK14352 428 AGTV-----IREDVPPGALA 442 (482)
T ss_pred CCCE-----EcCCCCCCcEE
Confidence 9999 99999999864
No 8
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-42 Score=330.10 Aligned_cols=362 Identities=22% Similarity=0.334 Sum_probs=267.0
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|+++++|+++++.+++++++.. ..+.+..+++.+||+++++.+.+++...+++|++++||.
T Consensus 37 li~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~------~~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P 110 (481)
T PRK14358 37 MVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG------SGVAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTP 110 (481)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc------CCcEEecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCee
Confidence 6899999999999999999999999999999853 135566677888999999999998843346799999997
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCH---hHHh
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNP---SVLD 151 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~---~~l~ 151 (380)
+.+.+++++++.|+++++.+|+++.+.+++.+||.+..|+++++.+|.|||... .++++++|+|+|++ ++++
T Consensus 111 ~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~ 190 (481)
T PRK14358 111 LLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELAR 190 (481)
T ss_pred ccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHH
Confidence 667789999999999998899998888888899999999889999999997633 24678999999995 4555
Q ss_pred hccCCC---CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH-HHHHhh-hc----ccCcccccCCC-ccccc
Q psy9164 152 RIEIKP---TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM-CLYLNS-LR----QKRPKLLKEGD-GIVGN 220 (380)
Q Consensus 152 ~l~~~~---~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~-~~~l~~-~~----~~~~~~~~~~~-~i~~~ 220 (380)
.+.... .....|+++.+.+++ +++++...++|..++.-..+..++ ..++.. .. ........+.. .+.++
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 554321 112347888888886 689998888776666554443332 212221 11 10111122222 24678
Q ss_pred eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300 (380)
Q Consensus 221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~ 300 (380)
++|++++.|++++.|.+++.||++|.|+++|.|.+++|+++|.|++++++.+++||+++.|++++.+.. ++.||+
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~-----~~~Ig~ 345 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP-----GTVLGE 345 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcC-----CcEECC
Confidence 889999999999999989999999999999999999999999999999999999999999999988843 455555
Q ss_pred cceeCcceEEc-----------c-----ceEECCCeEECcceEEcCC-------e-eecceeecCcceeecceeEecCce
Q psy9164 301 KCVVGQWVRME-----------N-----ITVLGEDVIVQDELYVNGG-------Q-VLPHKSIGSSLHMLGEDVIVQDEL 356 (380)
Q Consensus 301 ~~~ig~~~~i~-----------~-----~~~ig~~~~ig~~~~i~~~-------~-v~~~~~i~~~~~~~~~~v~i~~~~ 356 (380)
++.|++++.++ . .++||+++.||+++.+.+. + +..+..||.+ +.+.++++||+++
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~-~~i~~~~~Ig~~~ 424 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN-TTLIAPRVVGDAA 424 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC-CEEcCCcEECCCC
Confidence 55555544431 1 2445555555555555431 1 1122233333 3345567889999
Q ss_pred EEeceeeeccccccCCCCCCCcc
Q psy9164 357 YVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 357 ~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+|++|++ |++|+|+++++
T Consensus 425 ~i~~gs~-----v~~~v~~~~~~ 442 (481)
T PRK14358 425 FIAAGSA-----VHDDVPEGAMA 442 (481)
T ss_pred EECCCCE-----EecccCCCCEE
Confidence 9998888 99999998875
No 9
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.9e-42 Score=327.01 Aligned_cols=348 Identities=16% Similarity=0.283 Sum_probs=248.5
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC---------cEEEEeecC-----CCCCCchHHHHhHHhhC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG---------ISLVFSHEN-----EPLGTAGPLALAKDILN 66 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~---------~~i~~~~~~-----~~~gt~~al~~a~~~i~ 66 (380)
||+|+|++|.++|+++|+|+++|+.+++++|+.+.+ .++ +.+.+..+. +++||+++++.++.++.
T Consensus 37 lId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~ 115 (436)
T PLN02241 37 LIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAY-NFGNGGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFE 115 (436)
T ss_pred EehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccC-CCCCCcccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999997632 122 333333332 47899999999988774
Q ss_pred CC----CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECCCCceeEEEeCCCCCC------
Q psy9164 67 KS----QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNEHGCIESFIEKPQEFV------ 134 (380)
Q Consensus 67 ~~----~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~~~~v~~~~ek~~~~~------ 134 (380)
+. +++|||++||++++.|+.+++++|+++++++|+++.+++ ++..||++.+|+++++.+|.|||....
T Consensus 116 ~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~ 195 (436)
T PLN02241 116 DAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQV 195 (436)
T ss_pred hcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCcccccccc
Confidence 32 478999999999999999999999999999999988775 468899999998899999999986432
Q ss_pred ---------------CCeEEEEEEEeCHhHHhhc-cC---CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHH
Q psy9164 135 ---------------SNKINAGMYIFNPSVLDRI-EI---KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLK 194 (380)
Q Consensus 135 ---------------~~~~~~giyi~~~~~l~~l-~~---~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~ 194 (380)
.+++++|+|+|++++|..+ ++ ...++..++++.+++++ +++++.++++|.+++++++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~ 275 (436)
T PLN02241 196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYE 275 (436)
T ss_pred cccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHH
Confidence 3799999999999999543 32 22356678999999884 8999999999999999999999
Q ss_pred HHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeE
Q psy9164 195 GMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI 274 (380)
Q Consensus 195 a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 274 (380)
++..++.... ....+.+.+.+.......+++.+ .++.+.+ ++|+++|+|+ ++.|++|+|+++|.|+++|+|.+++
T Consensus 276 a~~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~si 350 (436)
T PLN02241 276 ANLALTKQPP--KFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTV 350 (436)
T ss_pred HHHHHhcCCc--hhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeE
Confidence 9988887431 11122333333333333355555 4566654 8899999998 8888889999999999988888877
Q ss_pred EcCCCEECCceEEeeeeEecceEECcc---ceeCcceEEccceEECCCeEECcceEEcCCe-eecceeecCcceeecce-
Q psy9164 275 IGWKCVVGQWVRMENITVLGECIIGWK---CVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIGSSLHMLGED- 349 (380)
Q Consensus 275 ig~~~~ig~~~~i~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~~~~~~~~~~- 349 (380)
++.......+... ..+...+ +.||+++.+. +++|+++++||+++.+.++. +..+.++|+++++ +++
T Consensus 351 i~g~~~~~~~~~~-------~~~~~~~~~~~~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 421 (436)
T PLN02241 351 MMGADYYETEEEI-------ASLLAEGKVPIGIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYI-RSGI 421 (436)
T ss_pred EECCCcccccccc-------ccccccCCcceEECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEE-eCCE
Confidence 7553211111100 0111111 1344444444 35566666666666665443 2233344444333 334
Q ss_pred eEecCceEEeceee
Q psy9164 350 VIVQDELYVNGGQV 363 (380)
Q Consensus 350 v~i~~~~~i~~~~v 363 (380)
|+||++++|++|++
T Consensus 422 ~~i~~~~~~~~~~~ 435 (436)
T PLN02241 422 VVILKNAVIPDGTV 435 (436)
T ss_pred EEEcCCcEeCCCCC
Confidence 57888888887776
No 10
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.2e-42 Score=322.89 Aligned_cols=313 Identities=24% Similarity=0.380 Sum_probs=243.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCc-------EEE--EeecCC---CCCCchHHHHhHHhhCCC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGI-------SLV--FSHENE---PLGTAGPLALAKDILNKS 68 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~-------~i~--~~~~~~---~~gt~~al~~a~~~i~~~ 68 (380)
||+|+|++|.++|+++|+|+++|+.+++++|+.+ ..+|++ .+. +..+.+ .+||+++++.|++++.+.
T Consensus 37 li~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~ 115 (380)
T PRK05293 37 IIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-GSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQY 115 (380)
T ss_pred ehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-CCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999976 344443 332 333333 589999999999999422
Q ss_pred -CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEe
Q psy9164 69 -QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIF 145 (380)
Q Consensus 69 -~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~ 145 (380)
.++|||++||.+++.++.++++.|+++++++|+++... +++.+||.+..|++++|.+|.|||....+++.++|+|+|
T Consensus 116 ~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~ 195 (380)
T PRK05293 116 DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIF 195 (380)
T ss_pred CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEE
Confidence 36799999999999999999999999888888887654 467889999998889999999999877788999999999
Q ss_pred CHhHHhh-ccC------CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCcc
Q psy9164 146 NPSVLDR-IEI------KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217 (380)
Q Consensus 146 ~~~~l~~-l~~------~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i 217 (380)
++++|.. +.. ...++..++++.+++++ +++++..+++|.+++++++|++++..++..... ...+.+.+.+
T Consensus 196 ~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~--~~~~~~~~~~ 273 (380)
T PRK05293 196 NWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENP--LNLFDRNWRI 273 (380)
T ss_pred cHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCch--hhhcCCCCce
Confidence 9998854 322 12244568899988775 799999999999999999999998777754322 1122333444
Q ss_pred ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI 297 (380)
Q Consensus 218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ 297 (380)
...+.+.++++|++++.|. ++.||++|.|+. .+.+|+||++|.|+++|+|.+|+|++++.|+++|.| .+++
T Consensus 274 ~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i------~~~i 344 (380)
T PRK05293 274 YSVNPNLPPQYIAENAKVK-NSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI------ERAI 344 (380)
T ss_pred ecCCcCCCCCEECCCCEEe-cCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEE------eEEE
Confidence 4555566667777777773 778888888863 577899999999999999999999999999999998 5677
Q ss_pred ECccceeCcceEEccc----eEECCCeEECcc
Q psy9164 298 IGWKCVVGQWVRMENI----TVLGEDVIVQDE 325 (380)
Q Consensus 298 ig~~~~ig~~~~i~~~----~~ig~~~~ig~~ 325 (380)
+++++.|+.++.+.++ .+||+++.|+++
T Consensus 345 i~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 345 IGENAVIGDGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred ECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence 7777777777666553 334444443333
No 11
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.1e-41 Score=326.07 Aligned_cols=359 Identities=23% Similarity=0.363 Sum_probs=266.8
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|++++++++++..+++.+++.+. + +.+..+.+.+||+++++++.+++.. .++|++++||.
T Consensus 30 li~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~--i~~~~~~~~~G~~~ai~~a~~~l~~-~~~~lv~~~D~p 102 (451)
T TIGR01173 30 MLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----D--VNWVLQAEQLGTGHAVLQALPFLPD-DGDVLVLYGDVP 102 (451)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----C--cEEEEcCCCCchHHHHHHHHHhcCC-CCcEEEEECCcC
Confidence 68999999999999999999999999999998752 3 4445566778999999999999942 35799999997
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l 153 (380)
+.+.++.++++.|++. ..++++.+.+++..|+.+..|+++++..+.|||... ...++++|+|+|+++.| +.+
T Consensus 103 ~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l 180 (451)
T TIGR01173 103 LISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWL 180 (451)
T ss_pred CcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHH
Confidence 5566799999998765 367777777777789999888888999999986532 23578999999999985 434
Q ss_pred cCC---C---CCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc---Ccccc--cCCCcccc
Q psy9164 154 EIK---P---TSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK---RPKLL--KEGDGIVG 219 (380)
Q Consensus 154 ~~~---~---~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~---~~~~~--~~~~~i~~ 219 (380)
+.. . .....++++.+++++ +++.++.+++ |.++++|+++.+++.....+.... ....+ .....+.+
T Consensus 181 ~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (451)
T TIGR01173 181 PKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRG 260 (451)
T ss_pred HhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECC
Confidence 321 1 112246788888776 6889999887 899999999877654443322111 01111 22335678
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
++.|++++.|++++.|+++++||++|.|++++.|.++.|+++|.|++++.+.++.||++|.||+++.|.+ +++||
T Consensus 261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~-----~~~i~ 335 (451)
T TIGR01173 261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP-----GSVLG 335 (451)
T ss_pred ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECC-----CCEEC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999854 33444
Q ss_pred ccceeCcceE-----------EccceEECCCeEECcceEEcCCeeec--------------ceeecCcceeecceeEecC
Q psy9164 300 WKCVVGQWVR-----------MENITVLGEDVIVQDELYVNGGQVLP--------------HKSIGSSLHMLGEDVIVQD 354 (380)
Q Consensus 300 ~~~~ig~~~~-----------i~~~~~ig~~~~ig~~~~i~~~~v~~--------------~~~i~~~~~~~~~~v~i~~ 354 (380)
+++.||+++. +.+.+.++ ++.||+++.|+++++.. +..||.++++ .++++||+
T Consensus 336 ~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~-~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i-~~~~~ig~ 413 (451)
T TIGR01173 336 AGVHIGNFVETKNARIGKGSKAGHLSYLG-DAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQL-VAPVKVGD 413 (451)
T ss_pred CCcEEccceeecCcEECCCcEecceeeEe-eeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEE-ECCcEECC
Confidence 4444444333 33322221 24555555555554332 2334444333 55789999
Q ss_pred ceEEeceeeeccccccCCCCCCCccC
Q psy9164 355 ELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 355 ~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
+++||+|++ |++|+|++++++
T Consensus 414 ~~~i~~g~~-----v~~~v~~~~~~~ 434 (451)
T TIGR01173 414 GATIAAGST-----VTKDVPEGALAI 434 (451)
T ss_pred CCEEccCCE-----ECccCCCCcEEE
Confidence 999999999 999999999873
No 12
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.6e-41 Score=319.43 Aligned_cols=356 Identities=22% Similarity=0.334 Sum_probs=265.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-CCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-QEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~~~~lv~~gD~ 79 (380)
||+|++++|.+.+++++++++++..+++++++.+ ..+.+..+++..||+++++.+.+++.+. .++|++++||.
T Consensus 35 li~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~ 108 (456)
T PRK14356 35 MLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------EDARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDT 108 (456)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cCceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCc
Confidence 6899999999999999999999999999888754 1344556677899999999999998432 46799999998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC------CCCCeEEEEEEEeCHhHHh
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE------FVSNKINAGMYIFNPSVLD 151 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~------~~~~~~~~giyi~~~~~l~ 151 (380)
+...++.++++.|+ +++.+++..+.+++..||.+.. +++++.+|.|||.- ..++++++|+|+|+++.++
T Consensus 109 P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~ 185 (456)
T PRK14356 109 PLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVE 185 (456)
T ss_pred ccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHH
Confidence 45667899998876 5567888888888999998876 67899999998651 3457889999999999875
Q ss_pred hc-cC---C---CCCcccchhhhhhcCC-cEEEEEecc--EEEecCChhhHHHHHHHHHhhhcccCccccc--------C
Q psy9164 152 RI-EI---K---PTSIEKEIFPLMSKEK-QLYAMELKG--FWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK--------E 213 (380)
Q Consensus 152 ~l-~~---~---~~~~~~~il~~l~~~~-~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~--------~ 213 (380)
.+ +. . ......++++.+.+.+ ++.++...+ .|.++++|++|.+++..+..+... ..+. +
T Consensus 186 ~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~---~~~~~~~~i~~~~ 262 (456)
T PRK14356 186 SLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE---KHLESGVLIHAPE 262 (456)
T ss_pred HHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCC
Confidence 44 21 1 1112245777777665 688888765 579999999999887665544321 1122 2
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL 293 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~ 293 (380)
...+++++.+++++.|.+++.|+++++||++|.|+++|.|.+++|+++|.|++++.+.+++||+++.||++++|.+
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~---- 338 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP---- 338 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECC----
Confidence 3445566666667777777777778899999999999999999999999999999999999999999999999954
Q ss_pred cceEECccceeCcceEE-----------ccceEECCCeEECcceEEcCCeee--------cceeec------Ccceeecc
Q psy9164 294 GECIIGWKCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVL--------PHKSIG------SSLHMLGE 348 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~--------~~~~i~------~~~~~~~~ 348 (380)
++++|+++.||+++.+ .+.+.++ ++.||+++.|+++++. .+..|| .++. +.+
T Consensus 339 -~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~-i~~ 415 (456)
T PRK14356 339 -GAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTA-LVA 415 (456)
T ss_pred -CCEECCCCEecCCceeeeeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCE-EeC
Confidence 4444555555544433 3333333 3566666677666532 113344 4433 356
Q ss_pred eeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164 349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
+++||++++||+|++ |++|+|++++++
T Consensus 416 ~~~ig~~~~i~~~~~-----v~~~~~~~~~~~ 442 (456)
T PRK14356 416 PVTIGDGALVGAGSV-----ITKDVPDGSLAI 442 (456)
T ss_pred CcEECCCCEEcCCCE-----EeccCCCCcEEE
Confidence 688999999999999 999999998863
No 13
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.6e-40 Score=305.77 Aligned_cols=299 Identities=22% Similarity=0.354 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|.++|++++++++++ +.+++.+|+.+ ...|++++.+..+++.+||+++++.+++++. +++|++++||.
T Consensus 32 li~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~--~~~~li~~gD~ 108 (353)
T TIGR01208 32 ILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQGEPLGLAHAVYTARDFLG--DDDFVVYLGDN 108 (353)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEECCCCCCHHHHHHHHHHhcC--CCCEEEEECCe
Confidence 68999999999999999999999 99999999976 4567888888888889999999999999995 57899999999
Q ss_pred ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC-
Q psy9164 80 ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT- 158 (380)
Q Consensus 80 i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~- 158 (380)
+++.+++++++.|+++++++|+++.+.+++..||.+..++++++.+|.|||....+++.++|+|+|++.+++.+.....
T Consensus 109 ~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~ 188 (353)
T TIGR01208 109 LIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPS 188 (353)
T ss_pred ecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCC
Confidence 9999999999999999999999998888888899988876678999999998777899999999999988887743211
Q ss_pred ----CcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCc
Q psy9164 159 ----SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGC 233 (380)
Q Consensus 159 ----~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 233 (380)
....++++.+++++ +++++.+.++|.++++|++|.+++..++.+...... . +.+.+.+.+.++|++++
T Consensus 189 ~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~-~------i~~~~~i~~~~~i~~~~ 261 (353)
T TIGR01208 189 WRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQ-G------VDDESKIRGRVVVGEGA 261 (353)
T ss_pred CCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccC-C------cCCCCEEcCCEEECCCC
Confidence 11245788888776 799999999999999999999999988875432211 1 23334444445555555
Q ss_pred EECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeee-eEecceEECccceeCcceEEc
Q psy9164 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI-TVLGECIIGWKCVVGQWVRME 311 (380)
Q Consensus 234 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~-~~~~~~~ig~~~~ig~~~~i~ 311 (380)
.| +++.|++.|.||++|.|++++|+++|.|+++|.|.++.|. ++.|++++.+.+. ++..++++|+++.|++++.+.
T Consensus 262 ~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~-~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 262 KI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVE-HSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred EE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEE-eeEEcCCCEEcCCcceeecCEEcCCCEECCCcccc
Confidence 55 3445544555555555555555555555555554433332 3344444444322 122455566666665555554
No 14
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9e-41 Score=314.69 Aligned_cols=300 Identities=18% Similarity=0.305 Sum_probs=230.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccccc----CC-cEEEEeecC-----CCCCCchHHHHhHHhhCCC-C
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKK----LG-ISLVFSHEN-----EPLGTAGPLALAKDILNKS-Q 69 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~----~~-~~i~~~~~~-----~~~gt~~al~~a~~~i~~~-~ 69 (380)
||+|+|++|.++|+++|+|+++|+.+++++|+.+.+.. .+ +.+.+..+. ..+||+++++++++++.+. .
T Consensus 37 lI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~ 116 (429)
T PRK02862 37 LIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDV 116 (429)
T ss_pred EeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999752211 12 223222221 1389999999999998432 3
Q ss_pred CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCC--------------
Q psy9164 70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEF-------------- 133 (380)
Q Consensus 70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~-------------- 133 (380)
++|||++||++++.|++++++.|++.++++|+++.+. +++..||++..|+++++..|.|||...
T Consensus 117 ~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~ 196 (429)
T PRK02862 117 DEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGL 196 (429)
T ss_pred CEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhccccccccc
Confidence 6799999999999999999999999999999988765 457889999999889999999998631
Q ss_pred -------CCCeEEEEEEEeCHhHHhh-ccC--CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164 134 -------VSNKINAGMYIFNPSVLDR-IEI--KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL 203 (380)
Q Consensus 134 -------~~~~~~~giyi~~~~~l~~-l~~--~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~ 203 (380)
...++++|+|+|++++|.. +.. ...++.++++|.+.++++++++..+++|.+++++++|++++..++...
T Consensus 197 ~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~ 276 (429)
T PRK02862 197 SPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQP 276 (429)
T ss_pred ccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCC
Confidence 2358899999999999964 443 234566789999998889999999999999999999999998877332
Q ss_pred cccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC------
Q psy9164 204 RQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW------ 277 (380)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~------ 277 (380)
... ...+.+.+.+...+.+.+.+.+ .++.+. ++.||++|.| +++.|++|+||++|.|++++.|.+|+|+.
T Consensus 277 ~~~-~~~~~~~~~i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~ 352 (429)
T PRK02862 277 NPP-FSFYDEKAPIYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYES 352 (429)
T ss_pred CCc-ccccCCCCceeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCccccc
Confidence 221 1233344555555566666666 366775 6899999999 88999999999999999999999999976
Q ss_pred -------------CCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164 278 -------------KCVVGQWVRMENITVLGECIIGWKCVVGQWVRM 310 (380)
Q Consensus 278 -------------~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i 310 (380)
++.||++|.| .++++++++.||+++.+
T Consensus 353 ~~~~~~~~~~~~~~~~Ig~~~~i------~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 353 SEEREELRKEGKPPLGIGEGTTI------KRAIIDKNARIGNNVRI 392 (429)
T ss_pred ccccccccccCCcccEECCCCEE------EEEEECCCcEECCCcEE
Confidence 4556666666 44444444444444444
No 15
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.3e-41 Score=319.31 Aligned_cols=358 Identities=20% Similarity=0.299 Sum_probs=253.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|++++|.++|++++++++++..+++++++... .+.+..+++..||+++++.+.+++. ..++|++++||.
T Consensus 35 li~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~~~~~Gt~~al~~a~~~l~-~~~~vlV~~gD~P 107 (456)
T PRK09451 35 MVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQAEQLGTGHAMQQAAPFFA-DDEDILMLYGDVP 107 (456)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEECCCCCCcHHHHHHHHHhhc-cCCcEEEEeCCcc
Confidence 68999999999999999999999999999998641 3455667788999999999999884 246799999997
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHh-hc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLD-RI 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~-~l 153 (380)
+.+.++.++++.|++.+ .+++..+.+++..||++.. ++++|.+|.|||... .++++++|+|+|+++.|. .+
T Consensus 108 ~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l 184 (456)
T PRK09451 108 LISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-ENGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWL 184 (456)
T ss_pred cCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cCCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHH
Confidence 66788999999886554 4566677788888998754 578999999998632 246899999999998875 33
Q ss_pred cC---C---CCCcccchhhhhhcCC-cEEEEE------eccE--EEecCChhhHHHHHHH--HHh-hhcccCcccccCCC
Q psy9164 154 EI---K---PTSIEKEIFPLMSKEK-QLYAME------LKGF--WMDVGQPRDFLKGMCL--YLN-SLRQKRPKLLKEGD 215 (380)
Q Consensus 154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~------~~~~--~~~i~~~~~~~~a~~~--~l~-~~~~~~~~~~~~~~ 215 (380)
+. . ...+..|+++.+++++ ++..+. +.|+ |.+++++++|++++.. .+. ......+.. .
T Consensus 185 ~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~----~ 260 (456)
T PRK09451 185 AKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPAR----F 260 (456)
T ss_pred HhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCE----E
Confidence 21 1 1123357899999886 778875 3555 6779999999887531 221 111111111 1
Q ss_pred ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE-ec
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV-LG 294 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~-~~ 294 (380)
.+.+++.+++++.|++++.|.++++||++|.|+++|.|.+++|+++|.|++++.+.+++||+++.|++++.|.+... .+
T Consensus 261 ~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~ 340 (456)
T PRK09451 261 DLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAE 340 (456)
T ss_pred EECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECC
Confidence 13355677778888888888778888888888888888888888888888888888888888888888777743221 12
Q ss_pred c-----------eEECccceeCcceEEccceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCc
Q psy9164 295 E-----------CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDE 355 (380)
Q Consensus 295 ~-----------~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~ 355 (380)
+ +.+++++.++..+.++ ++.||++|.||+++++.+ ++++.+ ..||.+ +.+.++++|+++
T Consensus 341 ~~~ig~~~~i~~~~i~~~~~~~~~~~~g-~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~-~~i~~~~~ig~~ 418 (456)
T PRK09451 341 GAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSD-TQLVAPVTVGKG 418 (456)
T ss_pred CceeccceeeeceeeCCCCccCcccccc-ccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCC-CEEeCCcEECCC
Confidence 2 2333333333333332 245555666665555432 112222 234444 345678899999
Q ss_pred eEEeceeeeccccccCCCCCCCcc
Q psy9164 356 LYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 356 ~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++||+||+ |++|+|+++++
T Consensus 419 ~~i~~gs~-----v~~~v~~~~~~ 437 (456)
T PRK09451 419 ATIGAGTT-----VTRDVAENELV 437 (456)
T ss_pred CEECCCCE-----EccccCCCCEE
Confidence 99999999 99999999886
No 16
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.5e-40 Score=312.05 Aligned_cols=361 Identities=18% Similarity=0.238 Sum_probs=266.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|++++++++++..+++.+++.+. +..+.+..+.+..|++++++.+++++...+++|++++||.
T Consensus 35 li~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P 110 (446)
T PRK14353 35 MLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTP 110 (446)
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcc
Confidence 68999999999999999999999999999988652 2233445566788999999999998842257799999997
Q ss_pred c-cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164 80 I-CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI 153 (380)
Q Consensus 80 i-~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l 153 (380)
+ ...+++.+++.+ +.+++.+++..+..++..||.+.. +++++.++.|||... ...+.++|+|+|+++.| +.+
T Consensus 111 ~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l 188 (446)
T PRK14353 111 LITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KGGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALL 188 (446)
T ss_pred cCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CCCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHH
Confidence 4 445577888744 455677787778778888998777 578999999997532 23688999999998765 433
Q ss_pred cC---C---CCCcccchhhhhhcCC-cEEEEEec-cEEEecCChhhHHHHHHHHHhhhccc--C--cccccCC-Cccccc
Q psy9164 154 EI---K---PTSIEKEIFPLMSKEK-QLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQK--R--PKLLKEG-DGIVGN 220 (380)
Q Consensus 154 ~~---~---~~~~~~~il~~l~~~~-~i~~~~~~-~~~~~i~~~~~~~~a~~~~l~~~~~~--~--~~~~~~~-~~i~~~ 220 (380)
+. . ......+.++.+++++ +++.+..+ ..|.++++|++|.+++..+..+.+.. . ...+.+. ..+++.
T Consensus 189 ~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (446)
T PRK14353 189 DRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYD 268 (446)
T ss_pred HhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCc
Confidence 22 1 1112345778888776 58888886 45999999999998876554332110 0 1112222 245677
Q ss_pred eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
+.|++++.|++++.|++++.||++|.|++++.|.+++||++|.|++++.|. +++||++|.||+++.+ .++.|+
T Consensus 269 ~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i------~~~~i~ 342 (446)
T PRK14353 269 TVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV------KNAKLG 342 (446)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE------eceEEC
Confidence 888888888888888888888888888888888889999999999999996 6889999999998888 456666
Q ss_pred ccceeCcceEEccceEECCCeEECcceEEcC-------Ceeecc-eeecCcceeecceeEecCceEEeceeeeccccccC
Q psy9164 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNG-------GQVLPH-KSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGS 371 (380)
Q Consensus 300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~-------~~v~~~-~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~ 371 (380)
+++.++.++.+.+ ++||+++.||+++.+.+ ++++++ .+||.++ ++.++++||++++||++++ |++
T Consensus 343 ~~~~i~~~~~i~~-~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~-~i~~~~~Ig~~~~ig~~s~-----v~~ 415 (446)
T PRK14353 343 EGAKVNHLTYIGD-ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNS-ALVAPVTIGDGAYIASGSV-----ITE 415 (446)
T ss_pred CCCEECCeeEEcC-cEEcCCcEECCceeeeccccccCCCcEECCCcEECCCC-EEeCCCEECCCCEECCCCE-----ECc
Confidence 6666666666543 56667777666665521 232222 3444443 3467789999999999999 999
Q ss_pred CCCCCCccC
Q psy9164 372 SVPEPQIIM 380 (380)
Q Consensus 372 ~vp~~~iv~ 380 (380)
|+|++++++
T Consensus 416 ~v~~~~~~~ 424 (446)
T PRK14353 416 DVPDDALAL 424 (446)
T ss_pred cCCCCCEEE
Confidence 999999863
No 17
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.8e-40 Score=307.93 Aligned_cols=301 Identities=19% Similarity=0.339 Sum_probs=224.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEee---c------CCCCCCchHHHHhHHhhCCCC-C
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSH---E------NEPLGTAGPLALAKDILNKSQ-E 70 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~---~------~~~~gt~~al~~a~~~i~~~~-~ 70 (380)
||+|+|++|.++|+++|+|+++|+.+++++|+.+.+...++.+.+.. + ++.+||+++++.+++++.+.. +
T Consensus 39 lI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~ 118 (407)
T PRK00844 39 LIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPD 118 (407)
T ss_pred EhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCC
Confidence 69999999999999999999999999999999753222222222321 1 125899999999999995322 4
Q ss_pred cEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCC-------CCeEEEE
Q psy9164 71 PFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFV-------SNKINAG 141 (380)
Q Consensus 71 ~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~-------~~~~~~g 141 (380)
+|||++||++++.++.+++++|+++++++|+++.+. +++..||++..|+++++..|.|||.... +.++++|
T Consensus 119 ~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~G 198 (407)
T PRK00844 119 YVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMG 198 (407)
T ss_pred EEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeE
Confidence 599999999999999999999999998899888764 5678899999998899999999986432 5799999
Q ss_pred EEEeCHhHH-hhccC------CCCCcccchhhhhhcCCcEEEEEe------------ccEEEecCChhhHHHHHHHHHhh
Q psy9164 142 MYIFNPSVL-DRIEI------KPTSIEKEIFPLMSKEKQLYAMEL------------KGFWMDVGQPRDFLKGMCLYLNS 202 (380)
Q Consensus 142 iyi~~~~~l-~~l~~------~~~~~~~~il~~l~~~~~i~~~~~------------~~~~~~i~~~~~~~~a~~~~l~~ 202 (380)
+|+|++++| +.++. ...++..++++.++++++++++.+ .++|.|++++++|++++..+|..
T Consensus 199 iyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~ 278 (407)
T PRK00844 199 NYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV 278 (407)
T ss_pred EEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence 999999996 54542 234566789999999999999866 59999999999999999988864
Q ss_pred hcccCcccccCCCccccceeeCCCCEE-CCC--cEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCC
Q psy9164 203 LRQKRPKLLKEGDGIVGNVLVDPTATI-GPG--CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279 (380)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~--~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~ 279 (380)
.... ....+...+.......+.+.+ +.. ..+.++++||++|.|+ ++.|.+|+||++|.|+++++|.+|+|+++|
T Consensus 279 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~ 355 (407)
T PRK00844 279 HPVF--NLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGV 355 (407)
T ss_pred CCcc--ccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCC
Confidence 3211 111111222211111222222 111 1233578888888887 888888888999999988888888888888
Q ss_pred EECCceEEeeeeEecceEECccceeCcceEE
Q psy9164 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRM 310 (380)
Q Consensus 280 ~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i 310 (380)
.|+++|.| .++++++++.|++++++
T Consensus 356 ~i~~~~~i------~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 356 RIGRGAVV------RRAILDKNVVVPPGATI 380 (407)
T ss_pred EECCCCEE------EeeEECCCCEECCCCEE
Confidence 88888888 44555555555555444
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-39 Score=309.31 Aligned_cols=344 Identities=19% Similarity=0.271 Sum_probs=254.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|++++|.++ ++++.|++++..+++++++.+. ..++++.+..++...||+++++.+.. . .++||+++||..
T Consensus 32 li~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~gt~~al~~~~~-~---~d~vlv~~gD~p 104 (430)
T PRK14359 32 MLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEY--FPGVIFHTQDLENYPGTGGALMGIEP-K---HERVLILNGDMP 104 (430)
T ss_pred HHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhc--CCceEEEEecCccCCCcHHHHhhccc-C---CCeEEEEECCcc
Confidence 689999999987 7899999999999999998752 12455554444566899999987432 2 578999999983
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHHhhccC-
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVLDRIEI- 155 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l~~l~~- 155 (380)
+. ....++.+.+.++++++.+.+.+++..||.+..+ ++++..+.|+|.. ...++.++|+|+|++++|+.+..
T Consensus 105 ~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~ 181 (430)
T PRK14359 105 LV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPL 181 (430)
T ss_pred CC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHh
Confidence 21 2355566666667788888888888889987764 6899999998752 23467899999999999976521
Q ss_pred ---C---CCCcccchhhhhhcCC-cEEEEEec-cEEEecCChhhHHHHHHHHHhhhcccC-----------cccccCCCc
Q psy9164 156 ---K---PTSIEKEIFPLMSKEK-QLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQKR-----------PKLLKEGDG 216 (380)
Q Consensus 156 ---~---~~~~~~~il~~l~~~~-~i~~~~~~-~~~~~i~~~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~ 216 (380)
. ......++++.+++++ ++..+..+ ++|.++++|++|.+++..+..+..+.. .....+++.
T Consensus 182 ~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 261 (430)
T PRK14359 182 LKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVE 261 (430)
T ss_pred cCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcE
Confidence 1 1122346778888774 68888886 589999999999999766555433211 112445556
Q ss_pred cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECC----ceEEeeeeE
Q psy9164 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ----WVRMENITV 292 (380)
Q Consensus 217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~----~~~i~~~~~ 292 (380)
|.+++++++++.|++++.|+ +++||++|.|++ +.+.+++||+++.|+++++|.++.||++|.|+. ++++++..+
T Consensus 262 i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~ 339 (430)
T PRK14359 262 FEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSY 339 (430)
T ss_pred EcCceEECCCCEECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEecccccccccc
Confidence 66777777777777777776 777888888866 666788899999999999888888888886555 345555566
Q ss_pred ecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeec
Q psy9164 293 LGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLP 365 (380)
Q Consensus 293 ~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p 365 (380)
.++|.||+++.||+++.+.+ .++||++++||.++.| .++++||++++||+|++
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i------------------~~~~~ig~~~~i~~g~~-- 399 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQL------------------VAPVNIEDNVLIAAGST-- 399 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEE------------------eCCcEECCCCEECCCCE--
Confidence 67777788888877776643 2566666666666665 56788999999999999
Q ss_pred cccccCCCCCCCcc
Q psy9164 366 HKSIGSSVPEPQII 379 (380)
Q Consensus 366 ~~~v~~~vp~~~iv 379 (380)
|++|+|+++++
T Consensus 400 ---v~~~v~~~~~~ 410 (430)
T PRK14359 400 ---VTKDVPKGSLA 410 (430)
T ss_pred ---EccccCCCcEE
Confidence 99999999876
No 19
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.5e-39 Score=309.00 Aligned_cols=360 Identities=24% Similarity=0.403 Sum_probs=262.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|+++++++++++.+++++++.+ + +.+..+.+.+||+++++++.+++.+.+++|++++||.
T Consensus 32 li~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~--~~~~~~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p 104 (458)
T PRK14354 32 MVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R--SEFALQEEQLGTGHAVMQAEEFLADKEGTTLVICGDTP 104 (458)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C--cEEEEcCCCCCHHHHHHHHHHHhcccCCeEEEEECCcc
Confidence 6899999999999999999999999999999865 1 3345567788999999999999843235699999996
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCC----CCCCeEEEEEEEeCHhHH-hhc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQE----FVSNKINAGMYIFNPSVL-DRI 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~----~~~~~~~~giyi~~~~~l-~~l 153 (380)
+.+.+++++++.|++.+++.|+++...+++..|+.+..|+++++..+.|||.. ....++++|+|+|+++.| +.+
T Consensus 105 ~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l 184 (458)
T PRK14354 105 LITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEAL 184 (458)
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHH
Confidence 56777999999998888888888888888888998888888899999998642 234688999999999744 544
Q ss_pred cCC------CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhhHHHHHHHHHhhhccc----CcccccC-CCcccc
Q psy9164 154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQK----RPKLLKE-GDGIVG 219 (380)
Q Consensus 154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~ 219 (380)
+.. ......++++.+.+++ +++++..+++ |.++++++++..++..+..+.... ....+.+ ...|++
T Consensus 185 ~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~ 264 (458)
T PRK14354 185 KKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDA 264 (458)
T ss_pred HHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECC
Confidence 221 1112246777777665 6889998865 567778888887765443332211 1112333 235777
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
++.|++++.|++++.|++++.||++|.|++++.|.+++|+++|.|+. +.+.++.||++|.||++|.|.+ ++.||
T Consensus 265 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~-----~~~Ig 338 (458)
T PRK14354 265 DVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRP-----GSVIG 338 (458)
T ss_pred CcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecC-----CCEEe
Confidence 88888888888888888888999999999999999999999999984 6777888888888888888843 44555
Q ss_pred ccceeCcceEEccceEECCC-----------eEECcceEEcCCeeec--------ce------eecCcceeecceeEecC
Q psy9164 300 WKCVVGQWVRMENITVLGED-----------VIVQDELYVNGGQVLP--------HK------SIGSSLHMLGEDVIVQD 354 (380)
Q Consensus 300 ~~~~ig~~~~i~~~~~ig~~-----------~~ig~~~~i~~~~v~~--------~~------~i~~~~~~~~~~v~i~~ 354 (380)
+++.|++++.+.+ +.|+++ +.||+++.|++++.+. +. .+|.++ .+.++++||+
T Consensus 339 ~~~~i~~~~~i~~-~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s-~i~~~~~ig~ 416 (458)
T PRK14354 339 EEVKIGNFVEIKK-STIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNS-NLVAPVTVGD 416 (458)
T ss_pred CCcEECCceEEee-eEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCC-EEeCCcEECC
Confidence 5555555544431 222222 2344445554444321 22 344443 3355688999
Q ss_pred ceEEeceeeeccccccCCCCCCCccC
Q psy9164 355 ELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 355 ~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
+++||+|++ |++|+|++++++
T Consensus 417 ~~~v~~~~~-----v~~~~~~~~~~~ 437 (458)
T PRK14354 417 NAYIAAGST-----ITKDVPEDALAI 437 (458)
T ss_pred CCEECCCCE-----ECCCCCCCCEEE
Confidence 999999999 999999999863
No 20
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7e-39 Score=305.90 Aligned_cols=353 Identities=20% Similarity=0.268 Sum_probs=252.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.+.+ ++++|++++..+++.+++.+ + +.+..+++.+||+++++++.+++.+ .++|++++||.
T Consensus 30 li~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~--~~~~~~~~~~g~~~ai~~a~~~l~~-~~~vlv~~gD~p 100 (448)
T PRK14357 30 MINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----W--VKIFLQEEQLGTAHAVMCARDFIEP-GDDLLILYGDVP 100 (448)
T ss_pred HHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----c--cEEEecCCCCChHHHHHHHHHhcCc-CCeEEEEeCCcc
Confidence 6899999999975 89999999999999988864 2 3345677889999999999999842 46799999996
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHHhh-c
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVLDR-I 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l~~-l 153 (380)
+.+.+++++++.|+++++++|+++.+.+++..||.+..+ ++++ .+.|||... ..+++++|+|+|++++|.. +
T Consensus 101 ~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~ 178 (448)
T PRK14357 101 LISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVL 178 (448)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHH
Confidence 677889999999999889999999998888899998876 6777 888876532 1358999999999998643 4
Q ss_pred cC---CCC---CcccchhhhhhcCCcEEEEEeccE--EEecCChhhHHHHHHHHHhh----hcccCcccccCC-Cccccc
Q psy9164 154 EI---KPT---SIEKEIFPLMSKEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNS----LRQKRPKLLKEG-DGIVGN 220 (380)
Q Consensus 154 ~~---~~~---~~~~~il~~l~~~~~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~----~~~~~~~~~~~~-~~i~~~ 220 (380)
+. ... ....|+++.+ .++..+...++ |.+++++.++..+...+... +.......+.+. ..++++
T Consensus 179 ~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (448)
T PRK14357 179 PKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYD 255 (448)
T ss_pred HhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccc
Confidence 32 110 1122455555 24778888888 66777988887664433221 111111223332 356777
Q ss_pred eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300 (380)
Q Consensus 221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~ 300 (380)
+.|++++.|++++.|++++.||++|.|++++.|.+|+||++|.|. .+.+.+++|++++.|++++.+.. ++.+|+
T Consensus 256 ~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~-----~~~ig~ 329 (448)
T PRK14357 256 VEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLRE-----GTVLKK 329 (448)
T ss_pred eEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECC-----cccccC
Confidence 888888888888888888888999999999988889999999885 46777888888888888888843 344445
Q ss_pred cceeCcceEE-----------ccceEECCCeEECcceEEcCCeeec--------ceeecCc-----ceeecceeEecCce
Q psy9164 301 KCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVLP--------HKSIGSS-----LHMLGEDVIVQDEL 356 (380)
Q Consensus 301 ~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~~--------~~~i~~~-----~~~~~~~v~i~~~~ 356 (380)
++.||+++.+ .+.+.++ ++.||+++.|++++++. +.+||++ .+.+.++++||+++
T Consensus 330 ~~~Ig~~~~i~~~~ig~~~~~~~~~~~~-~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~ 408 (448)
T PRK14357 330 SVKIGNFVEIKKSTIGENTKAQHLTYLG-DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGA 408 (448)
T ss_pred CcEecCceeeeccEEcCCcCcccccccc-CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCC
Confidence 4444444433 2222221 34555555555554331 2344443 23345678899999
Q ss_pred EEeceeeeccccccCCCCCCCcc
Q psy9164 357 YVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 357 ~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.||+|++ |++|+|+++++
T Consensus 409 ~i~ag~~-----v~~~v~~~~~~ 426 (448)
T PRK14357 409 LIGAGSV-----ITEDVPPYSLA 426 (448)
T ss_pred EEcCCCE-----ECCcCCCCcEE
Confidence 9999999 99999999876
No 21
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.6e-39 Score=301.70 Aligned_cols=300 Identities=23% Similarity=0.369 Sum_probs=225.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccccc----CCcEEEEe-------ecCCCCCCchHHHHhHHhhCCC-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKK----LGISLVFS-------HENEPLGTAGPLALAKDILNKS- 68 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~----~~~~i~~~-------~~~~~~gt~~al~~a~~~i~~~- 68 (380)
||+|+|++|.++|+++|+|+++|+.+++++|+.+.+.. .+..+.+. .+++.+||+++++++++++.+.
T Consensus 49 lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~ 128 (425)
T PRK00725 49 IIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYD 128 (425)
T ss_pred EhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999752211 11122211 2334689999999999999532
Q ss_pred CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCC-------CCCeEE
Q psy9164 69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEF-------VSNKIN 139 (380)
Q Consensus 69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~-------~~~~~~ 139 (380)
+++|+|++||++++.++.++++.|+++++++|+++.+. +++..||++..|+++++..|.|||... .+.+++
T Consensus 129 ~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n 208 (425)
T PRK00725 129 PKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLAS 208 (425)
T ss_pred CCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEECCCCccccccCccceEEE
Confidence 35799999999999999999999999999999988765 567899999999889999999998643 257999
Q ss_pred EEEEEeCHhHHh-hccC------CCCCcccchhhhhhcCCcEEEEEec-----------cEEEecCChhhHHHHHHHHHh
Q psy9164 140 AGMYIFNPSVLD-RIEI------KPTSIEKEIFPLMSKEKQLYAMELK-----------GFWMDVGQPRDFLKGMCLYLN 201 (380)
Q Consensus 140 ~giyi~~~~~l~-~l~~------~~~~~~~~il~~l~~~~~i~~~~~~-----------~~~~~i~~~~~~~~a~~~~l~ 201 (380)
+|+|+|++++|. .+.. ...++..++++.+++++++++|.+. ++|.+++++++|++++..++.
T Consensus 209 ~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 209 MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred eeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 999999999874 4532 2234667899999999999999886 599999999999999988875
Q ss_pred hhcccCcccccCCCccccceeeCCCCEE---CCCcE-ECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC
Q psy9164 202 SLRQKRPKLLKEGDGIVGNVLVDPTATI---GPGCR-IGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277 (380)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~~~-i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~ 277 (380)
..... ..+.....+.......+.+.+ +.++. +..+++||++|.| ++|.|.+|+|+++|.|+++|.|.+|+|++
T Consensus 289 ~~~~~--~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~ 365 (425)
T PRK00725 289 VTPEL--DLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLP 365 (425)
T ss_pred CCchh--hccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcC
Confidence 32110 111112222211112222222 12211 2247889999998 78888899999999999999999999999
Q ss_pred CCEECCceEEeeeeEecceEECccceeCcceE
Q psy9164 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVR 309 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~ 309 (380)
+|.|+++|.| .++++++++.|++++.
T Consensus 366 ~~~I~~~~~i------~~~ii~~~~~i~~~~~ 391 (425)
T PRK00725 366 DVNVGRSCRL------RRCVIDRGCVIPEGMV 391 (425)
T ss_pred CCEECCCCEE------eeEEECCCCEECCCCE
Confidence 9999999888 4455555555554433
No 22
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.8e-38 Score=302.08 Aligned_cols=360 Identities=21% Similarity=0.363 Sum_probs=257.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|++++++++++..+++.+++.+. . .+.+..++...|++++++.+.+++.+.++++++++||.
T Consensus 31 li~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~--~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P 105 (450)
T PRK14360 31 LVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---P--GLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVP 105 (450)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---C--CeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCcc
Confidence 68999999999999999999999999999998652 1 34455567788999999999998853346799999998
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC----CCCCCeEEEEEEEeCHhHHhhc-
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ----EFVSNKINAGMYIFNPSVLDRI- 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~----~~~~~~~~~giyi~~~~~l~~l- 153 (380)
+.+.+++++++.|++.++.++++..+.+++..||.+..|+++++.++.|||. ...+++.++|+|+|+++.|..+
T Consensus 106 ~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~ 185 (450)
T PRK14360 106 LLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVL 185 (450)
T ss_pred ccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHH
Confidence 6677899999999998888888888888888899999988899999999975 3456899999999999877553
Q ss_pred cCCC---CC---cccchhhhhhcCCcEEEEEeccE--EEecCChhhHHHHHHHHHhhhc----ccCcccccCCC-ccccc
Q psy9164 154 EIKP---TS---IEKEIFPLMSKEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNSLR----QKRPKLLKEGD-GIVGN 220 (380)
Q Consensus 154 ~~~~---~~---~~~~il~~l~~~~~i~~~~~~~~--~~~i~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~-~i~~~ 220 (380)
+... .. ...+.++.+. .+..++..+. |..++++.++..+...+..... ......+.+.. .+.++
T Consensus 186 ~~~~~~~~~~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~ 262 (450)
T PRK14360 186 PKLSSNNDQKEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISET 262 (450)
T ss_pred hhccccccCCceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCC
Confidence 2211 11 1123444442 2455556554 5669999998777555433222 21122344443 47778
Q ss_pred eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300 (380)
Q Consensus 221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~ 300 (380)
+++++++.|++++.|++++.||++|.|++++.|.+++|+++|.|+ .+.+.+++||+++.|+++|.|.+ ++.||+
T Consensus 263 ~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~-----~~~Ig~ 336 (450)
T PRK14360 263 VELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP-----EAQIGS 336 (450)
T ss_pred EEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC-----CCEEeC
Confidence 888888888888888888999999999999999888888888885 45667777777777777777742 344444
Q ss_pred cceeCcceEEc-----------cc-----eEECCCeEECcceEEcC-------Ceeec-ceeecCcceeecceeEecCce
Q psy9164 301 KCVVGQWVRME-----------NI-----TVLGEDVIVQDELYVNG-------GQVLP-HKSIGSSLHMLGEDVIVQDEL 356 (380)
Q Consensus 301 ~~~ig~~~~i~-----------~~-----~~ig~~~~ig~~~~i~~-------~~v~~-~~~i~~~~~~~~~~v~i~~~~ 356 (380)
++.||+++.+. +. +.||++|.||+++.+.. ++++. +..||.++ ++.++++||+++
T Consensus 337 ~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~-~i~~~~~ig~~~ 415 (450)
T PRK14360 337 NCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANS-VLVAPITLGEDV 415 (450)
T ss_pred ceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCC-EEeCCcEECCCC
Confidence 44444444332 21 33444444444444421 12222 23444444 456788999999
Q ss_pred EEeceeeeccccccCCCCCCCccC
Q psy9164 357 YVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 357 ~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
+|++|++ |++|+|++++++
T Consensus 416 ~v~~~~~-----v~~~~~~~~~~~ 434 (450)
T PRK14360 416 TVAAGST-----ITKDVPDNSLAI 434 (450)
T ss_pred EECCCCE-----ECccCCCCCEEE
Confidence 9999999 999999998863
No 23
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.6e-37 Score=288.32 Aligned_cols=300 Identities=21% Similarity=0.335 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC---cEEEEee-------cCCCCCCchHHHHhHHhhCCC-C
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG---ISLVFSH-------ENEPLGTAGPLALAKDILNKS-Q 69 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~---~~i~~~~-------~~~~~gt~~al~~a~~~i~~~-~ 69 (380)
||+|+|++|.++|+++|+|+++++.+++++|+.+.+.... ..+++.. +++.+||+++++.+.+++.+. .
T Consensus 32 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~ 111 (361)
T TIGR02091 32 IIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDP 111 (361)
T ss_pred EeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999975221111 1223221 223589999999999998432 3
Q ss_pred CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCC-------eEEE
Q psy9164 70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSN-------KINA 140 (380)
Q Consensus 70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~-------~~~~ 140 (380)
++|++++||++++.++.++++.|+++++++++++.+. +++..||++..|+++++.+|.|||...... +.++
T Consensus 112 ~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~ 191 (361)
T TIGR02091 112 EYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASM 191 (361)
T ss_pred CEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccccccccccEEee
Confidence 6799999999999999999999998888888887765 356789999998888999999998655555 8999
Q ss_pred EEEEeCHhHH-hhccC------CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccC
Q psy9164 141 GMYIFNPSVL-DRIEI------KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKE 213 (380)
Q Consensus 141 giyi~~~~~l-~~l~~------~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~ 213 (380)
|+|+|++++| +.+.. ...++..++++.++++++++++.++++|.+++++++|++++..++.+..... .+..
T Consensus 192 Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~ 269 (361)
T TIGR02091 192 GIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR 269 (361)
T ss_pred eEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc
Confidence 9999999987 44432 2334556899999999999999999999999999999999988886543211 1111
Q ss_pred CCccc-cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeE
Q psy9164 214 GDGIV-GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITV 292 (380)
Q Consensus 214 ~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~ 292 (380)
...+. ....+.+++.+++++.+ +++.||++|+|+++ .+.+++++++|.|+++|+|.+|++++++.|++++.+
T Consensus 270 ~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l----- 342 (361)
T TIGR02091 270 KWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI----- 342 (361)
T ss_pred CCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-----
Confidence 22221 22345556666666655 47888999999876 788999999999999999999999999999998888
Q ss_pred ecceEECccceeCcceEE
Q psy9164 293 LGECIIGWKCVVGQWVRM 310 (380)
Q Consensus 293 ~~~~~ig~~~~ig~~~~i 310 (380)
.++++|+++.|+.++.|
T Consensus 343 -~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 343 -RNAIIDKNVRIGEGVVI 359 (361)
T ss_pred -eeeEECCCCEECCCCEe
Confidence 45555555555554433
No 24
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=8.2e-38 Score=290.82 Aligned_cols=298 Identities=20% Similarity=0.352 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHccccccCCcEE-------EEeecCCCC--CCchHHHHhHHhhCC-CC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAE-QMEDELTVETKKLGISL-------VFSHENEPL--GTAGPLALAKDILNK-SQ 69 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i-------~~~~~~~~~--gt~~al~~a~~~i~~-~~ 69 (380)
||+|+|++|.++|+++|+++++|+.+ ++++|+.+ ...|++++ .+..++..+ |++++++.+++++.. .+
T Consensus 36 lIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~ 114 (369)
T TIGR02092 36 LIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTS 114 (369)
T ss_pred EEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999886 99999976 34555553 233333444 455568889998832 14
Q ss_pred CcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcC--CCCcee-EEEECCCCceeEEEeCCCCCCCCeEEEEEEEeC
Q psy9164 70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE--EPSKYG-VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFN 146 (380)
Q Consensus 70 ~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~ 146 (380)
++|||++||++++.+|.+++++|+++++.+|+++.+.+ ++..|| .+..++++++..+.+++.......+++|+|+|+
T Consensus 115 ~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~ 194 (369)
T TIGR02092 115 EYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVS 194 (369)
T ss_pred CEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEE
Confidence 67999999999999999999999999999999998865 567775 455666778877754433333467899999999
Q ss_pred HhHHh-hcc----CCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccc-cCCCccccc
Q psy9164 147 PSVLD-RIE----IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLL-KEGDGIVGN 220 (380)
Q Consensus 147 ~~~l~-~l~----~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~-~~~~~i~~~ 220 (380)
++++. .+. .....+..++++.+++..+++++...++|.+++++++|.+++..+++..... ..+ .....+...
T Consensus 195 ~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~ 272 (369)
T TIGR02092 195 TDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTK 272 (369)
T ss_pred HHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeec
Confidence 99763 332 2222233468888887789999999999999999999999998888664321 111 111112111
Q ss_pred eeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300 (380)
Q Consensus 221 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~ 300 (380)
..+.+++.|++++.| ++++||++|.|+ +.+.+|+|+++|.|+++|.|.++++++++.|++++.+ .++++|+
T Consensus 273 ~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i------~~~ii~~ 343 (369)
T TIGR02092 273 VKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL------ENVIIDK 343 (369)
T ss_pred cCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEE------EEEEECC
Confidence 123366777777777 578888888886 3578888999999999998888888888888888888 4455555
Q ss_pred cceeCcceEE
Q psy9164 301 KCVVGQWVRM 310 (380)
Q Consensus 301 ~~~ig~~~~i 310 (380)
++.|++++.+
T Consensus 344 ~~~v~~~~~~ 353 (369)
T TIGR02092 344 DVVIEPNVKI 353 (369)
T ss_pred CCEECCCCEe
Confidence 5555554444
No 25
>KOG1461|consensus
Probab=100.00 E-value=1.6e-36 Score=278.25 Aligned_cols=326 Identities=17% Similarity=0.229 Sum_probs=252.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc--ccCCcEEEEeecCCCCCCchHHHH--hHHhhCCCCCcEEEEe
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET--KKLGISLVFSHENEPLGTAGPLAL--AKDILNKSQEPFFVLN 76 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~--~~~~~~i~~~~~~~~~gt~~al~~--a~~~i~~~~~~~lv~~ 76 (380)
||+|+|++|.++|+++|+|+++.++.++++|+++.. .++...+..+...+....+++++. .+..+ .+||++++
T Consensus 57 mIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~li---tgDFiLVs 133 (673)
T KOG1461|consen 57 MIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI---TGDFILVS 133 (673)
T ss_pred HHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhccee---ecceEEEe
Confidence 799999999999999999999999999999998831 223334444444555666666664 45555 89999999
Q ss_pred CCcccCCChHHHHHHHHhc-----CCcEEEEEEEcC---CCCceeEEEEC-CCCceeEEEe----C-----C--------
Q psy9164 77 SDIICDFPFKDLVSFHKNH-----GKEGTIVVTQVE---EPSKYGVVLYN-EHGCIESFIE----K-----P-------- 130 (380)
Q Consensus 77 gD~i~~~~l~~~l~~h~~~-----~~~~tl~~~~~~---~~~~~g~v~~d-~~~~v~~~~e----k-----~-------- 130 (380)
||+++|.+|+++++.|+++ ++.||+++++.. .... -.+.+| .+.|+..+.+ + +
T Consensus 134 gd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~-~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~ 212 (673)
T KOG1461|consen 134 GDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQ-VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSND 212 (673)
T ss_pred CCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcc-eEEEEcCCcceEEeehhhcccccccccCHHHhcCCC
Confidence 9999999999999999653 367899888762 2222 345555 5678888864 1 1
Q ss_pred C-CCCCCeEEEEEEEeCHhHHhhccCCCC-Ccccchhhhh----hcCCcEEEEEecc--EEEecCChhhHHHHHHHHHhh
Q psy9164 131 Q-EFVSNKINAGMYIFNPSVLDRIEIKPT-SIEKEIFPLM----SKEKQLYAMELKG--FWMDVGQPRDFLKGMCLYLNS 202 (380)
Q Consensus 131 ~-~~~~~~~~~giyi~~~~~l~~l~~~~~-~~~~~il~~l----~~~~~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~~ 202 (380)
. ..+.++.+++|.+||+.++..|.++.. +...|++.-+ +-..+++.+.... |...+.+...|.......+.+
T Consensus 213 ~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~R 292 (673)
T KOG1461|consen 213 EVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQR 292 (673)
T ss_pred cEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHh
Confidence 1 234588899999999999999987642 2333433222 2234788887765 778888888888777888877
Q ss_pred hc-ccCccc-ccCCC---ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcC
Q psy9164 203 LR-QKRPKL-LKEGD---GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277 (380)
Q Consensus 203 ~~-~~~~~~-~~~~~---~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~ 277 (380)
+. +..|.. +.... .-..+.|-++.+.++..+.++.++.||.++.||.++.|.||+||.+|.||.+++|.++.|++
T Consensus 293 W~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~ 372 (673)
T KOG1461|consen 293 WTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWN 372 (673)
T ss_pred hcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeec
Confidence 63 222221 11111 12256777889999999999999999999999999999999999999999999999999999
Q ss_pred CCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc
Q psy9164 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH 336 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~ 336 (380)
+|+||+||.| ++++|++++.|++++.+.+++++|.++++|++-.+..++++.+
T Consensus 373 ~v~Igdnc~I------~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~~~ 425 (673)
T KOG1461|consen 373 NVTIGDNCRI------DHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ 425 (673)
T ss_pred CcEECCCceE------eeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccccccccccC
Confidence 9999999999 8899999999999999999999999999999988888765533
No 26
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-32 Score=228.69 Aligned_cols=199 Identities=26% Similarity=0.515 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|.|+.|..+|+++|.|++++ ....+++++.+ +++|+++++|..|+++.|-|+|+..++++++ +++|+++.||.
T Consensus 33 mi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~--~~~f~l~LGDN 109 (286)
T COG1209 33 MIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFVG--DDDFVLYLGDN 109 (286)
T ss_pred hhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhcC--CCceEEEecCc
Confidence 79999999999999999999998 67888888887 7899999999999999999999999999996 79999999998
Q ss_pred ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCC
Q psy9164 80 ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTS 159 (380)
Q Consensus 80 i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~ 159 (380)
++..++.++++.+.++.++.++++.++++|++||++.+|++++++.+.|||..+.++++-+|+|+|++++|+.++.-..+
T Consensus 110 i~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS 189 (286)
T COG1209 110 IFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPS 189 (286)
T ss_pred eeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCCcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCC
Confidence 76669999999999988899999999999999999999988999999999999999999999999999999988654333
Q ss_pred cc-----cchhhhhhcCCc-EEEEEeccEEEecCChhhHHHHHHHHHhh
Q psy9164 160 IE-----KEIFPLMSKEKQ-LYAMELKGFWMDVGQPRDFLKGMCLYLNS 202 (380)
Q Consensus 160 ~~-----~~il~~l~~~~~-i~~~~~~~~~~~i~~~~~~~~a~~~~l~~ 202 (380)
.+ .|..+.++++++ .......|+|.|.|+++++++|+...+..
T Consensus 190 ~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 190 ARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred CCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 32 346888888885 45556678999999999999998777663
No 27
>KOG1462|consensus
Probab=100.00 E-value=1.1e-31 Score=233.11 Aligned_cols=303 Identities=21% Similarity=0.312 Sum_probs=186.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcE---EEEee-cCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGIS---LVFSH-ENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~---i~~~~-~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
||||+|++|.++|++++.|++.. ....+++.+.+. ....++ +.+.. ..+..||+++|+.....+. .+|||++
T Consensus 42 Mi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~-~~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik--S~Dflvl 118 (433)
T KOG1462|consen 42 MILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSN-IDLKKRPDYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVL 118 (433)
T ss_pred eeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcC-CcccccccEEEeecccccccCCHHHHhhhhhhhc--cCCEEEE
Confidence 79999999999999999999987 457788888662 122222 22221 2347799999999999994 5699999
Q ss_pred eCCcccCCChHHHHHHHHhcCCcEEEEEEEcC-----------CCCceeEEEECCCCceeEEEeC---------------
Q psy9164 76 NSDIICDFPFKDLVSFHKNHGKEGTIVVTQVE-----------EPSKYGVVLYNEHGCIESFIEK--------------- 129 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~-----------~~~~~g~v~~d~~~~v~~~~ek--------------- 129 (380)
.||.+++.++..++++++..++.+.+++.... ....+.++..+++..-+-|...
T Consensus 119 sCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL 198 (433)
T KOG1462|consen 119 SCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLL 198 (433)
T ss_pred ecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhh
Confidence 99999999999999999988765554443211 1112233444433322233211
Q ss_pred ---CC-CCCCCeEEEEEEEeCHhHHhhccC--CCCCcccchhhhhhcCCc------------------------------
Q psy9164 130 ---PQ-EFVSNKINAGMYIFNPSVLDRIEI--KPTSIEKEIFPLMSKEKQ------------------------------ 173 (380)
Q Consensus 130 ---~~-~~~~~~~~~giyi~~~~~l~~l~~--~~~~~~~~il~~l~~~~~------------------------------ 173 (380)
|. ...+++.++++|+|+.+++++|.+ ...++..+++|+|++++.
T Consensus 199 ~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d 278 (433)
T KOG1462|consen 199 WNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDD 278 (433)
T ss_pred hcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCccc
Confidence 22 445688999999999999999974 457788888888865432
Q ss_pred ---EEEEEe--ccEEEecCChhhHHHHHH-HHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEE
Q psy9164 174 ---LYAMEL--KGFWMDVGQPRDFLKGMC-LYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI 247 (380)
Q Consensus 174 ---i~~~~~--~~~~~~i~~~~~~~~a~~-~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i 247 (380)
++++.. +..+..+++...|+++++ ..+..+...... ..... . ..+.++..++++++|.|
T Consensus 279 ~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~-~k~~~-----------~---~~~l~g~d~iv~~~t~i 343 (433)
T KOG1462|consen 279 RIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKF-VKNYV-----------K---KVALVGADSIVGDNTQI 343 (433)
T ss_pred ceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhcccccc-ccchh-----------h---heeccchhhccCCCcee
Confidence 233333 334667888888998884 122222221110 00000 0 00233344455555555
Q ss_pred cCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceE
Q psy9164 248 EGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELY 327 (380)
Q Consensus 248 ~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~ 327 (380)
++++.|..|+||.+|.||+.+.+.+|+++++++||+++.| .+|+||.++.||.++.+.+ |.||.+=+|.+...
T Consensus 344 ~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I------ensIIg~gA~Ig~gs~L~n-C~Ig~~yvVeak~~ 416 (433)
T KOG1462|consen 344 GENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI------ENSIIGMGAQIGSGSKLKN-CIIGPGYVVEAKGK 416 (433)
T ss_pred cccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce------ecceecccceecCCCeeee-eEecCCcEEccccc
Confidence 5555555555555555555555555555555555555555 5555555555555555544 55555555544333
Q ss_pred E
Q psy9164 328 V 328 (380)
Q Consensus 328 i 328 (380)
.
T Consensus 417 ~ 417 (433)
T KOG1462|consen 417 H 417 (433)
T ss_pred c
Confidence 3
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=1.3e-29 Score=220.89 Aligned_cols=200 Identities=69% Similarity=1.143 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+++++|+++++.+++++|+.+...+.++++.+..+.+..||+++++.+++++...+++|++++||++
T Consensus 33 li~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~ 112 (233)
T cd06425 33 MIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVI 112 (233)
T ss_pred hHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEe
Confidence 68999999999999999999999999999999864345678887877788899999999999999533478999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-CCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCC
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTS 159 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~ 159 (380)
++.+++++++.|+++++++|+++.+.+++..||++..|+ +++|.++.|||....++++++|+|+|++++|+.+.....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~ 192 (233)
T cd06425 113 CDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTS 192 (233)
T ss_pred eCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCccc
Confidence 999999999999999999999999888888999999987 7899999999987778999999999999999998776667
Q ss_pred cccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHH
Q psy9164 160 IEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYL 200 (380)
Q Consensus 160 ~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l 200 (380)
++.++++.+++++++.++.++++|.+++++++|.++++.+|
T Consensus 193 ~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 193 IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred chhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 77889999999999999999999999999999999987664
No 29
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=5.5e-29 Score=220.11 Aligned_cols=198 Identities=32% Similarity=0.649 Sum_probs=173.3
Q ss_pred CHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-CCcEEEEeCC
Q psy9164 1 MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-QEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~~~~lv~~gD 78 (380)
||+|+|++|.+ +|+++|+|++++..+++.+|+.+..+.+++.+.+..+++.+||+++++.+++++... .++|+|++||
T Consensus 33 lI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD 112 (257)
T cd06428 33 MIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNAD 112 (257)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCC
Confidence 69999999999 699999999999999999999874445678888888888999999999999998432 4679999999
Q ss_pred cccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEEC-CCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC
Q psy9164 79 IICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYN-EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI 155 (380)
Q Consensus 79 ~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~ 155 (380)
++++.+++++++.|+++++++|+++.+. +++..||++..| ++++|..+.|||....++++++|+|+|++++|+.+..
T Consensus 113 ~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~ 192 (257)
T cd06428 113 VCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKK 192 (257)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhh
Confidence 9999999999999999999999988876 457889999988 6789999999998878899999999999999987752
Q ss_pred ---------------------CCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHH
Q psy9164 156 ---------------------KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCL 198 (380)
Q Consensus 156 ---------------------~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~ 198 (380)
...++..++++.++++++++++.++++|.+++++++|.++++.
T Consensus 193 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 193 AFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred hccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 1123446899999999999999999999999999999998764
No 30
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.96 E-value=1.7e-27 Score=212.35 Aligned_cols=197 Identities=21% Similarity=0.420 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcccc---------------------ccCCcEEEEeecCCCCCCchHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVET---------------------KKLGISLVFSHENEPLGTAGPLA 59 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~---------------------~~~~~~i~~~~~~~~~gt~~al~ 59 (380)
||+|+|++|.++|+++|+|+++|+++++++|+.... .++++++.+..|++.+||++|++
T Consensus 36 iI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~ 115 (297)
T TIGR01105 36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSIL 115 (297)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHH
Confidence 689999999999999999999999999999996521 03467889999999999999999
Q ss_pred HhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEEC----CCCc---ee
Q psy9164 60 LAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN----EHGC---IE 124 (380)
Q Consensus 60 ~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d----~~~~---v~ 124 (380)
+|+++++ +++|+|++||.+++ ++++++++.|+++++.++++....+++.+||++..+ ++++ |.
T Consensus 116 ~a~~~l~--~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~ 193 (297)
T TIGR01105 116 CARPVVG--DNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIV 193 (297)
T ss_pred HHHHHhC--CCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccceEEEecccccCCCCeeeEe
Confidence 9999995 57899999999887 589999999987777665544444578999999984 3564 58
Q ss_pred EEEeCCCCC---CCCeEEEEEEEeCHhHHhhccCCC-CCc----ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164 125 SFIEKPQEF---VSNKINAGMYIFNPSVLDRIEIKP-TSI----EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 125 ~~~ek~~~~---~~~~~~~giyi~~~~~l~~l~~~~-~~~----~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
++.|||..+ .++++++|+|+|++++|+.++... ... ..++++.++++++++++.+.++|.|+|+|++|++++
T Consensus 194 ~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~ 273 (297)
T TIGR01105 194 EFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAF 273 (297)
T ss_pred EEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHH
Confidence 999998743 579999999999999999885422 111 237889999999999999999999999999999997
Q ss_pred HHH
Q psy9164 197 CLY 199 (380)
Q Consensus 197 ~~~ 199 (380)
..+
T Consensus 274 ~~~ 276 (297)
T TIGR01105 274 VKY 276 (297)
T ss_pred HHH
Confidence 654
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=99.95 E-value=1.7e-26 Score=206.51 Aligned_cols=197 Identities=20% Similarity=0.416 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc---------------------cCCcEEEEeecCCCCCCchHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK---------------------KLGISLVFSHENEPLGTAGPLA 59 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~---------------------~~~~~i~~~~~~~~~gt~~al~ 59 (380)
||+|+|++|.++|+++|+|+++++++++.+|+...+. +.++++.+..|++++||+++++
T Consensus 36 iI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~ 115 (297)
T PRK10122 36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSIL 115 (297)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHH
Confidence 6899999999999999999999999999999964210 2367888999999999999999
Q ss_pred HhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEEC----CCC---cee
Q psy9164 60 LAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN----EHG---CIE 124 (380)
Q Consensus 60 ~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d----~~~---~v~ 124 (380)
++++++. +++|+|++||.+++ +|++++++.|.+++++++++....+++..||.+..+ +++ +|.
T Consensus 116 ~a~~~l~--~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~ 193 (297)
T PRK10122 116 CARPAIG--DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIV 193 (297)
T ss_pred HHHHHcC--CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCCceEEEecCcccCCCCeeeEE
Confidence 9999994 57899999999886 589999999998887755555444678899999986 355 688
Q ss_pred EEEeCCCCC---CCCeEEEEEEEeCHhHHhhccCCC-C----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164 125 SFIEKPQEF---VSNKINAGMYIFNPSVLDRIEIKP-T----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 125 ~~~ek~~~~---~~~~~~~giyi~~~~~l~~l~~~~-~----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
+|.|||... .++++++|+|+|++++|+.+.... . ....++++.++++++++++.+.|+|.|+|+|++|++++
T Consensus 194 ~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~ 273 (297)
T PRK10122 194 EFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAF 273 (297)
T ss_pred EEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHH
Confidence 999998744 378999999999999998885421 1 12236888999999999999999999999999999998
Q ss_pred HHH
Q psy9164 197 CLY 199 (380)
Q Consensus 197 ~~~ 199 (380)
..+
T Consensus 274 ~~~ 276 (297)
T PRK10122 274 VKY 276 (297)
T ss_pred HHH
Confidence 776
No 32
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.95 E-value=7.5e-27 Score=205.85 Aligned_cols=200 Identities=36% Similarity=0.675 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHcCCCEE-EEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC--CCcEEEEeC
Q psy9164 1 MLLHQIEALVEAGVREV-ILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS--QEPFFVLNS 77 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i-~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~--~~~~lv~~g 77 (380)
||+|+|++|.++|++++ +|+.+++.+++.+++++ ...+++++.++.+++..||+++++++++++... +++|++++|
T Consensus 33 li~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~g 111 (248)
T PF00483_consen 33 LIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-GYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNG 111 (248)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-SGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETT
T ss_pred chhhhhhhhcccCCceEEEEEeecccccccccccc-cccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEec
Confidence 68999999999999995 55455889999999988 455678999999999999999999999999521 124999999
Q ss_pred CcccCCChHHHHHHHHhcCC--cEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCC-CCeEEEEEEEeCHhHHhhcc
Q psy9164 78 DIICDFPFKDLVSFHKNHGK--EGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRIE 154 (380)
Q Consensus 78 D~i~~~~l~~~l~~h~~~~~--~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~-~~~~~~giyi~~~~~l~~l~ 154 (380)
|++++.++.++++.|+++++ .+++...+.+++.+||++..|++++|.+|.|||.... ++++++|+|+|++++|+.+.
T Consensus 112 D~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 112 DIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLL 191 (248)
T ss_dssp EEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred cccccchhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceeccCceEEEcchHHHHHh
Confidence 99999999999999999988 5677777778889999999999899999999999776 89999999999999998872
Q ss_pred ----C--CCCCcccchhhhhhcCC-cEEEEEecc--EEEecCChhhHHHHHHHHHh
Q psy9164 155 ----I--KPTSIEKEIFPLMSKEK-QLYAMELKG--FWMDVGQPRDFLKGMCLYLN 201 (380)
Q Consensus 155 ----~--~~~~~~~~il~~l~~~~-~i~~~~~~~--~~~~i~~~~~~~~a~~~~l~ 201 (380)
. ....+..++++.+++++ .+.++...+ +|.|+|+|++|++|+..+++
T Consensus 192 ~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 192 EMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 1 23334567899999887 455778888 79999999999999877653
No 33
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.95 E-value=3.9e-26 Score=200.87 Aligned_cols=194 Identities=26% Similarity=0.449 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-cCCcEE-------------------EEeecCCCCCCchHHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-KLGISL-------------------VFSHENEPLGTAGPLAL 60 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i-------------------~~~~~~~~~gt~~al~~ 60 (380)
||+|+|++|.++|+++|+|+++|+.+++.+++.+... ..++++ .+..+.+.+||++++++
T Consensus 32 ii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~ 111 (254)
T TIGR02623 32 ILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKR 111 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecCCcCCcHHHHHH
Confidence 6899999999999999999999999999999975211 012222 23445567999999999
Q ss_pred hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA 140 (380)
Q Consensus 61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~ 140 (380)
+++++. +++|++++||++++.+++++++.|++.++++|++.. +++..||.+..|+ +++..|.|||... ++++++
T Consensus 112 ~~~~i~--~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG~v~~d~-~~V~~~~Ekp~~~-~~~i~~ 185 (254)
T TIGR02623 112 VREYLD--DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QPPGRFGALDLEG-EQVTSFQEKPLGD-GGWING 185 (254)
T ss_pred HHHhcC--CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECC-CeEEEEEeCCCCC-CCeEEE
Confidence 999994 578999999999999999999999999998887654 5678899998875 6899999998643 678999
Q ss_pred EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHH
Q psy9164 141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYL 200 (380)
Q Consensus 141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l 200 (380)
|+|+|++++|+.++....++..++++.++++++++++.++++|.+++++.+|.+++..+.
T Consensus 186 Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~ 245 (254)
T TIGR02623 186 GFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWE 245 (254)
T ss_pred EEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHH
Confidence 999999999988877666777899999999999999999999999999999987765543
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.95 E-value=3.9e-26 Score=202.94 Aligned_cols=196 Identities=22% Similarity=0.422 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|..+|+++|+|++. ++.+.+++++.+ ++.+++++.+..|++++||+++++.++++++ +++|++++||.
T Consensus 32 mI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 32 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQPSPDGLAQAFIIGEDFIG--GDPSALVLGDN 108 (286)
T ss_pred hHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEccCCCCHHHHHHHHHHHhC--CCCEEEEECCE
Confidence 7999999999999999998875 577899999977 5678999999999999999999999999995 57899999996
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC--
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK-- 156 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~-- 156 (380)
+++.++.++++.|.++++++|+++.+++++.+||++.+|+++++.++.|||..+.++++++|+|+|++++++.++.-
T Consensus 109 i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~ 188 (286)
T TIGR01207 109 IFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKP 188 (286)
T ss_pred eccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCCCeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCC
Confidence 67899999999998888889999999999999999999988999999999998889999999999999998877432
Q ss_pred --CCCcc-cchhhhhhcCCcEEEEEe-ccE-EEecCChhhHHHHHHHH
Q psy9164 157 --PTSIE-KEIFPLMSKEKQLYAMEL-KGF-WMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 157 --~~~~~-~~il~~l~~~~~i~~~~~-~~~-~~~i~~~~~~~~a~~~~ 199 (380)
...++ .++++.+++++++..... .++ |.|+|++++|.+++...
T Consensus 189 ~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~ 236 (286)
T TIGR01207 189 SARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFI 236 (286)
T ss_pred CCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 12222 368888888887665555 575 99999999999996544
No 35
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.95 E-value=6.4e-26 Score=201.72 Aligned_cols=197 Identities=20% Similarity=0.388 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVS-YRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|.++|+++|++++. +..+.+++++.+ .++|++++.|..|++++||++++..++++++ +++|++++||.
T Consensus 36 mI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~--~~~~~lv~gD~ 112 (292)
T PRK15480 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG--GDDCALVLGDN 112 (292)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEECCCCCCHHHHHHHHHHHhC--CCCEEEEECCe
Confidence 6999999999999999998765 467889999987 5678999999999999999999999999995 46799999996
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT 158 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~ 158 (380)
+++.+++++++.|.++++++|+++.+++++.+||++.+|+++++++|.|||..+.++++++|+|+|++++++.++.-..
T Consensus 113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~ 192 (292)
T PRK15480 113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKP 192 (292)
T ss_pred eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCC
Confidence 5689999999999888888999988999999999999998899999999999888999999999999999988753211
Q ss_pred C----c-ccchhhhhhcCCcEEE-EEecc-EEEecCChhhHHHHHHHHH
Q psy9164 159 S----I-EKEIFPLMSKEKQLYA-MELKG-FWMDVGQPRDFLKGMCLYL 200 (380)
Q Consensus 159 ~----~-~~~il~~l~~~~~i~~-~~~~~-~~~~i~~~~~~~~a~~~~l 200 (380)
+ + ..++++.+++++++.. +...+ .|.|+||++++.+|+..+.
T Consensus 193 ~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 193 SARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 1 1 1367888888887654 45567 5999999999999976554
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.95 E-value=5.2e-26 Score=199.16 Aligned_cols=196 Identities=20% Similarity=0.367 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|.++|+++|++++++ +.+++.+|+.+ .+.+++++.+..+++..||+++++.+++++. .++|+|++||.
T Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~--~~~~lv~~gD~ 109 (240)
T cd02538 33 MIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAVQPKPGGLAQAFIIGEEFIG--DDPVCLILGDN 109 (240)
T ss_pred hHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEeeCCCCCCHHHHHHHHHHhcC--CCCEEEEECCE
Confidence 68999999999999999998875 56889999976 4567888888888888999999999999995 57899999996
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC--
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK-- 156 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~-- 156 (380)
+.+.++.++++.|+++++++|+++.+.+++..||.+..|++++|+++.|||....++++++|+|+|++++|+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~ 189 (240)
T cd02538 110 IFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKP 189 (240)
T ss_pred EEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCC
Confidence 56778999999999888889999988888889999999988999999999988788899999999999999887521
Q ss_pred --CCCc-ccchhhhhhcCCcEEEEEec--cEEEecCChhhHHHHHHHH
Q psy9164 157 --PTSI-EKEIFPLMSKEKQLYAMELK--GFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 157 --~~~~-~~~il~~l~~~~~i~~~~~~--~~~~~i~~~~~~~~a~~~~ 199 (380)
...+ ..++++.+++++++.++.++ ++|.++++|++|.++++.+
T Consensus 190 ~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 190 SARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 1112 23688999988887777776 9999999999999997654
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.94 E-value=6e-25 Score=196.88 Aligned_cols=195 Identities=18% Similarity=0.337 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccC----------------------CcEEEEeecCCCCCCchHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKL----------------------GISLVFSHENEPLGTAGPL 58 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~----------------------~~~i~~~~~~~~~gt~~al 58 (380)
||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..+ +..+.+..|.+.+||++++
T Consensus 41 ii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av 119 (302)
T PRK13389 41 LIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAV 119 (302)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhhhhhhhHHHHhhhhccccCceEEEeecCCCCChHHHH
Confidence 58999999999999999999999999999999752 111 3466677778889999999
Q ss_pred HHhHHhhCCCCCcEEEEeCCcccC--------CChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECC-------CCce
Q psy9164 59 ALAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE-------HGCI 123 (380)
Q Consensus 59 ~~a~~~i~~~~~~~lv~~gD~i~~--------~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~-------~~~v 123 (380)
+.++++++ +++|+|++||.+++ .+++++++.|++++++ ++++.+.+++..||++..++ ++++
T Consensus 120 ~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V 196 (302)
T PRK13389 120 LCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVTAYGVVDCKGVELAPGESVPM 196 (302)
T ss_pred HHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCCcceEEEecCcccccCCcceE
Confidence 99999985 57899999999864 7999999999888775 77778888889999998763 3479
Q ss_pred eEEEeCCC--CCCCCeEEEEEEEeCHhHHhhccCCCC-----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164 124 ESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPT-----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 124 ~~~~ek~~--~~~~~~~~~giyi~~~~~l~~l~~~~~-----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
.+|.|||. ...++++++|+|+|++++|+.++.... .+..++++.+.++++++++.++|+|.|+|+|++|++++
T Consensus 197 ~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~ 276 (302)
T PRK13389 197 VGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF 276 (302)
T ss_pred EEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHH
Confidence 99999997 456789999999999999988854221 12346889999888999999999999999999999997
Q ss_pred HHH
Q psy9164 197 CLY 199 (380)
Q Consensus 197 ~~~ 199 (380)
..+
T Consensus 277 ~~~ 279 (302)
T PRK13389 277 VEY 279 (302)
T ss_pred HHH
Confidence 664
No 38
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.94 E-value=5.3e-25 Score=190.45 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecC-CCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN-EPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|.++|+++|+|+++++.+++.+|+.+ +.+++++.+..+. +.+||+++++.+++++. +++|++++||+
T Consensus 32 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~--~~~~lv~~~D~ 107 (221)
T cd06422 32 LIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEPDELLETGGGIKKALPLLG--DEPFLVVNGDI 107 (221)
T ss_pred HHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCCCcccccHHHHHHHHHhcC--CCCEEEEeCCe
Confidence 6899999999999999999999999999999976 4578888888776 78899999999999995 47899999999
Q ss_pred ccCCChHHHHHHHH--hcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164 80 ICDFPFKDLVSFHK--NHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP 157 (380)
Q Consensus 80 i~~~~l~~~l~~h~--~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~ 157 (380)
+++.++.++++.|+ +.++.+++...+.+++..+|.+..|+++++..+.|+|.. +++++|+|+|+++++..+....
T Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~ 184 (221)
T cd06422 108 LWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDADGRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPGK 184 (221)
T ss_pred eeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCCCcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcCc
Confidence 99999999999998 466677777777777788999999888999999988753 7899999999999998876542
Q ss_pred CCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164 158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a 195 (380)
. ...++++.++++++++++...++|.+++++++|.+|
T Consensus 185 ~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 185 F-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred c-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 2 234788999988999999999999999999998753
No 39
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.93 E-value=3.8e-24 Score=185.52 Aligned_cols=192 Identities=30% Similarity=0.567 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|++++|.++|+++++|+++++.+++.+++.+. ..++.++.+..+....|++++++.+++++. .++|++++||.+
T Consensus 31 li~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~--~~~~lv~~~D~~ 107 (223)
T cd06915 31 FLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPEPLGTGGAIKNALPKLP--EDQFLVLNGDTY 107 (223)
T ss_pred hHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCCCCcchHHHHHHHhhcC--CCCEEEEECCcc
Confidence 68999999999999999999999999999999752 235667767777788999999999999984 678999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCCc
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~~ 160 (380)
++.++.++++.|++.+.++++++.+.+++..|+.+..|+++++..+.|||....+.+.++|+|+|++++|+.+.....++
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~ 187 (223)
T cd06915 108 FDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSL 187 (223)
T ss_pred cCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCCCeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCCCh
Confidence 99999999999988888888888888777889998888888999999998766778999999999999999886655566
Q ss_pred ccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164 161 EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 161 ~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a 195 (380)
+.++++.+++++++.++.+.++|.+++++++|.++
T Consensus 188 ~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 188 EADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred HHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 77899999988899999999999999999999865
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.93 E-value=6.1e-24 Score=185.82 Aligned_cols=197 Identities=27% Similarity=0.495 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+++++|++++..+++++++.+ ..++++++.+..+++..||+++++.+++++. .++|++++||.+
T Consensus 33 li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~--~~~~li~~~D~~ 109 (236)
T cd04189 33 IIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLG--DEPFVVYLGDNL 109 (236)
T ss_pred hHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-hhhcCCeEEEEECCCCCChHHHHHHHHHhcC--CCCEEEEECCee
Confidence 6899999999999999999999999999999987 3457788888888888999999999999994 578999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCC--
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPT-- 158 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~-- 158 (380)
++.++.++++.|.++++++++++.+.+++..||.+..|+ +++..+.|||.....++.++|+|+|++++++.+.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~ 188 (236)
T cd04189 110 IQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD-GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSW 188 (236)
T ss_pred cCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC-CeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCC
Confidence 999999999999998888999888888888899888864 59999999988666789999999999999987743111
Q ss_pred ---CcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164 159 ---SIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLYLN 201 (380)
Q Consensus 159 ---~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~l~ 201 (380)
....++++.+++++ ++.+++.+++|.+++++++|.+++..+++
T Consensus 189 ~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 189 RGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 11246788888775 68999999999999999999999877764
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.93 E-value=3.6e-24 Score=188.86 Aligned_cols=195 Identities=25% Similarity=0.441 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-cCCcEEE-------Ee------------ecCCCCCCchHHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-KLGISLV-------FS------------HENEPLGTAGPLAL 60 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i~-------~~------------~~~~~~gt~~al~~ 60 (380)
||+|+++.+.++|+++|+++++|+++++++|+.+..+ ..++++. +. .+...+||++++++
T Consensus 31 ~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~ 110 (253)
T cd02524 31 ILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKR 110 (253)
T ss_pred HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccceeeecccccccceeecccCcccccHHHHHH
Confidence 6899999999999999999999999999999976321 0112221 11 12235789999999
Q ss_pred hHHhhCCCCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEE
Q psy9164 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA 140 (380)
Q Consensus 61 a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~ 140 (380)
+++++++ .++|++++||++++.++.++++.|.+.++++|++.. .++..||.+..|++++|..+.|||... +.++++
T Consensus 111 a~~~~~~-~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~--~~~~~~g~v~~d~~g~V~~~~ekp~~~-~~~i~~ 186 (253)
T cd02524 111 VRRYLGD-DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV--HPPGRFGELDLDDDGQVTSFTEKPQGD-GGWING 186 (253)
T ss_pred HHHhcCC-CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECCCCCEEEEEECCCCC-CceEEE
Confidence 9999941 278999999999999999999999999888887765 356788999999889999999998754 578999
Q ss_pred EEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164 141 GMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 141 giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~ 199 (380)
|+|+|++++++.+......+..++++.++++++++++.+.++|.+++++.+|.++...+
T Consensus 187 Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 187 GFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred EEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence 99999999998886654455668999999999999999999999999999999887555
No 42
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.93 E-value=6.7e-24 Score=183.21 Aligned_cols=184 Identities=39% Similarity=0.728 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+++++++++++.+++++++.+ ...++.++.+..+++..|++++++.+++++. .++|++++||++
T Consensus 31 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~--~~~~lv~~~D~~ 107 (217)
T cd04181 31 ILEYIIERLARAGIDEIILVVGYLGEQIEEYFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLG--DDDFLVVNGDVL 107 (217)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcC-hhhcCceEEEEeCCCCCccHHHHHHhhhhcC--CCCEEEEECCee
Confidence 6899999999999999999999999999999976 3336778888888778999999999999983 788999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC---
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP--- 157 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~--- 157 (380)
++.++.++++.|+++++++++++.+.+++..|+.+..|+++++.++.|||.....++.++|+|+|++++++.+....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~ 187 (217)
T cd04181 108 TDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRG 187 (217)
T ss_pred cCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCCcc
Confidence 99999999999999999999999888888899999998889999999998876678999999999999998886542
Q ss_pred CCcccchhhhhhcCCcEEEEEeccEEEecC
Q psy9164 158 TSIEKEIFPLMSKEKQLYAMELKGFWMDVG 187 (380)
Q Consensus 158 ~~~~~~il~~l~~~~~i~~~~~~~~~~~i~ 187 (380)
..+..++++.++++.++++++++++|.+++
T Consensus 188 ~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 188 EDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred cccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 455567899998889999999999999985
No 43
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.93 E-value=1.6e-23 Score=181.14 Aligned_cols=188 Identities=33% Similarity=0.618 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+++++|+++++.+++++|+.+ ...+++++.++.++..+||++++..+.+.. .++|+|++||.+
T Consensus 31 li~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~---~~~~lv~~~D~i 106 (220)
T cd06426 31 ILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP---TDPFLVMNGDIL 106 (220)
T ss_pred hHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-ccccCccEEEEECCCCCcchHHHHHHHhhC---CCCEEEEcCCEe
Confidence 6999999999999999999999999999999976 345677888877778899999998888777 788999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCCCCc
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~~~~ 160 (380)
++.++.++++.|++.++++++++.+......||++..|+ ++|.++.|||.. ++++++|+|+|++++++.+++.....
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~-~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~ 183 (220)
T cd06426 107 TNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG-GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFD 183 (220)
T ss_pred eccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC-CEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCCCCCcC
Confidence 999999999999998888898887766667799988875 899999999764 57899999999999999886543322
Q ss_pred ccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHH
Q psy9164 161 EKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 161 ~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a 195 (380)
..++++.+++++ ++.++.++++|.+++++++|.+|
T Consensus 184 l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a 219 (220)
T cd06426 184 MPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKA 219 (220)
T ss_pred HHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhh
Confidence 346788888775 69999999999999999999876
No 44
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.92 E-value=4e-23 Score=183.86 Aligned_cols=196 Identities=26% Similarity=0.408 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc------c--------------CCcEEEEeecCCCCCCchHHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK------K--------------LGISLVFSHENEPLGTAGPLAL 60 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~------~--------------~~~~i~~~~~~~~~gt~~al~~ 60 (380)
||+|+|++|.++|+++|+|+++++.+++.+|+.+.+. . .+.++.+..+++.+||+++++.
T Consensus 33 li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~ 112 (267)
T cd02541 33 VIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLC 112 (267)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHH
Confidence 6899999999999999999999999999999965211 0 1457778888888999999999
Q ss_pred hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEcC--CCCceeEEEECC----CCceeEEEeCCC
Q psy9164 61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQVE--EPSKYGVVLYNE----HGCIESFIEKPQ 131 (380)
Q Consensus 61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~~--~~~~~g~v~~d~----~~~v~~~~ek~~ 131 (380)
+++++. +++|+|++||.++.. +++++++.|++.++. ++++...+ ++..||.+..|+ .+++.++.|||.
T Consensus 113 ~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~ 189 (267)
T cd02541 113 AKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPK 189 (267)
T ss_pred HHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCC
Confidence 999995 478999999997654 499999999887665 35444443 567899999885 248999999986
Q ss_pred --CCCCCeEEEEEEEeCHhHHhhccCCCC-----CcccchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164 132 --EFVSNKINAGMYIFNPSVLDRIEIKPT-----SIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 132 --~~~~~~~~~giyi~~~~~l~~l~~~~~-----~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~ 199 (380)
...+.++++|+|+|++++|+.+..... ....++++.++++++++++.++++|.+++++++|++++..+
T Consensus 190 ~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 190 PEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred CCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 456789999999999999988754221 12236788998888999999999999999999999997654
No 45
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91 E-value=9.1e-24 Score=183.65 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=113.7
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW 277 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~ 277 (380)
++.+.|++++.|++++.|++.|.|++++.||++|.|++++.|. ++.||+++.|++++.|. .+.||+
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 4455566666666666666666676777777777777777776 78888888888888874 478999
Q ss_pred CCEECCceEEeeeeEe-cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCce
Q psy9164 278 KCVVGQWVRMENITVL-GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDEL 356 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~-~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~ 356 (380)
++.|+++++|+..+.. ..+.||+++.+.+++.+...+.||++++++.++.+..++.+.+..+-...+.+.++++||+++
T Consensus 83 ~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 83 RNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred ceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence 9999999999765432 245666666666666655555556655555555555444444432222234556788999999
Q ss_pred EEeceeeeccccccCCCCCCCcc
Q psy9164 357 YVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 357 ~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+|+++++ |++|+||++++
T Consensus 163 ~Vg~gs~-----V~~dVpp~~i~ 180 (255)
T PRK12461 163 MMAGGSR-----ISKDVPPYCMM 180 (255)
T ss_pred EECCCce-----EeccCCCCeEE
Confidence 9999999 99999999986
No 46
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.91 E-value=8.9e-24 Score=185.54 Aligned_cols=163 Identities=24% Similarity=0.313 Sum_probs=135.3
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW 277 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~ 277 (380)
++.+.|++++.+++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|. ++.||+
T Consensus 3 ~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 3 HPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred CCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 4556677777788888888888888888888888888888887 68899999999999985 689999
Q ss_pred CCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCc
Q psy9164 278 KCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE 355 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~ 355 (380)
+|.|+++|+|+..+..+ .+.||+++.|++++.|...++||+++++++++.+..++++++.++-...+.+.++++|+++
T Consensus 83 ~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~ 162 (254)
T cd03351 83 NNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRH 162 (254)
T ss_pred CCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCC
Confidence 99999999998766553 6899999999999999888999999999998888887766664433334556778999999
Q ss_pred eEEeceeeeccccccCCCCCCCcc
Q psy9164 356 LYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 356 ~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++|+++++ |++|+|+++++
T Consensus 163 ~~Ig~~s~-----V~~~i~~~~~~ 181 (254)
T cd03351 163 AMVGGGSG-----VVQDVPPYVIA 181 (254)
T ss_pred CEECcCCE-----EeeecCCCeEE
Confidence 99999999 99999998875
No 47
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.91 E-value=4.6e-23 Score=182.84 Aligned_cols=192 Identities=26% Similarity=0.409 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc--------------------cCCcEEEEeecCCCCCCchHHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK--------------------KLGISLVFSHENEPLGTAGPLAL 60 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--------------------~~~~~i~~~~~~~~~gt~~al~~ 60 (380)
||+|+|++|.++|+++|+|+++++.+++.+|+.+.+. ....++.+..+.+.+||+++++.
T Consensus 33 li~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~ 112 (260)
T TIGR01099 33 LIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLC 112 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEecCCCCCHHHHHHH
Confidence 6899999999999999999999999999999974210 00245667777888999999999
Q ss_pred hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECC----CCceeEEEeCCC
Q psy9164 61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNE----HGCIESFIEKPQ 131 (380)
Q Consensus 61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~----~~~v~~~~ek~~ 131 (380)
++++++ +++|+|++||.++.. +++++++.|+++++++ +++... +++..||++..|. +++|+.+.|||.
T Consensus 113 ~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~ 189 (260)
T TIGR01099 113 AEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPK 189 (260)
T ss_pred HHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCC
Confidence 999994 678999999997654 6999999999888765 444443 3568899998862 368999999985
Q ss_pred --CCCCCeEEEEEEEeCHhHHhhccCCCCC-----cccchhhhhhcCCcEEEEEeccEEEecCChhhHHHH
Q psy9164 132 --EFVSNKINAGMYIFNPSVLDRIEIKPTS-----IEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 132 --~~~~~~~~~giyi~~~~~l~~l~~~~~~-----~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a 195 (380)
...++++++|+|+|++++|+.+.....+ ...++++.++++++++++.++|+|.+++++++|+++
T Consensus 190 ~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 190 PEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 4457899999999999999887432221 123578888888999999999999999999999753
No 48
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91 E-value=1.2e-23 Score=184.69 Aligned_cols=164 Identities=24% Similarity=0.321 Sum_probs=130.4
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEE
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCII 275 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i 275 (380)
.+++.+.|++++.|++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|. .+.|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 345666666777777777777777777777777888888888776 78899999999999885 4899
Q ss_pred cCCCEECCceEEeeeeEe--cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEe
Q psy9164 276 GWKCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIV 352 (380)
Q Consensus 276 g~~~~ig~~~~i~~~~~~--~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i 352 (380)
|+++.|+++++|+..+.. +.+.||+++.|+.++.+..++.||+++.+++++.+...+++.+. +||.+ +.+.++++|
T Consensus 84 G~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~-~~i~~~v~I 162 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-TAVHQFVRI 162 (262)
T ss_pred CCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeec-ceecCCCEE
Confidence 999999999999776532 35788888888888888888888888888888887776655553 45544 455788999
Q ss_pred cCceEEeceeeeccccccCCCCCCCcc
Q psy9164 353 QDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+++++||++|+ |+||+||++++
T Consensus 163 g~~~~Ig~gs~-----V~~di~~~~~~ 184 (262)
T PRK05289 163 GAHAMVGGMSG-----VSQDVPPYVLA 184 (262)
T ss_pred CCCCEEeeecc-----eeccCCCCeEE
Confidence 99999999999 99999999876
No 49
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.91 E-value=1.9e-23 Score=183.41 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=135.3
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec-------------CeEEcC
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------GCIIGW 277 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ig~ 277 (380)
++.+.|.+++.|++++.|++++.|++++.||++|.|+++|.|. ++.||++|.|++++.|. ++.||+
T Consensus 2 ~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 2 HPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred CCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 3455666777777777777777777888888888888888776 78899999999999996 589999
Q ss_pred CCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCc
Q psy9164 278 KCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE 355 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~ 355 (380)
++.|+++|+|+.....+ .+.||+++.|+.++.+..++.||++++|++++.+..++++.+..+-...+.+.++++|+++
T Consensus 82 ~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~ 161 (254)
T TIGR01852 82 NNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRY 161 (254)
T ss_pred CCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCC
Confidence 99999999998766553 7899999999999999888999999999999988887776665433344566889999999
Q ss_pred eEEeceeeeccccccCCCCCCCcc
Q psy9164 356 LYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 356 ~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++|+++++ |++++|+++++
T Consensus 162 ~~Ig~~s~-----V~~~i~~~~~~ 180 (254)
T TIGR01852 162 AMIGGLSA-----VSKDVPPYGLV 180 (254)
T ss_pred CEEeeeee-----EeeecCCCcEE
Confidence 99999999 99999998876
No 50
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.91 E-value=5.7e-23 Score=185.20 Aligned_cols=191 Identities=16% Similarity=0.235 Sum_probs=130.0
Q ss_pred EEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccC
Q psy9164 183 WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRD 261 (380)
Q Consensus 183 ~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~ 261 (380)
+.-+.+|...+.....++.+.. ..+..+++.+.+++++.|++++.|++++.|++++.||++|.|++++.|+ +++||++
T Consensus 67 ~~~v~~p~~~~~~~~~~~~~~~-~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 67 ALVVKDPYLAFAKVAELFDPPP-KREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred EEEECCHHHHHHHHHHHhcccc-cccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 4555666654433222332211 1234567777788888888888888888888888888888888888885 7888899
Q ss_pred CEECCCcEec-CeEEcCCCEECCceEEeee---------------eEecceEECccceeCcceEE---------------
Q psy9164 262 AIVKSHSWLE-GCIIGWKCVVGQWVRMENI---------------TVLGECIIGWKCVVGQWVRM--------------- 310 (380)
Q Consensus 262 ~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~---------------~~~~~~~ig~~~~ig~~~~i--------------- 310 (380)
|.|++++.|. +++||++|.|+++|.|+.. .+.+.++||+++.||+++.+
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~ 225 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTK 225 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcE
Confidence 9998888886 7999999999999988631 11245777777777766655
Q ss_pred -ccceEECCCeEECcceEEcCCeee-cceeecCcce-----eecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 311 -ENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLH-----MLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 311 -~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~-----~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.+.+.|++++.||+++.|.+++.+ .+.+||+++. .+.++++||++++||++++ |++|+|+++++
T Consensus 226 I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~-----V~~~v~~~~~~ 296 (324)
T TIGR01853 226 IDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG-----VTKSIPPPGVY 296 (324)
T ss_pred EccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE-----eCCcCCCCcEE
Confidence 233344444444444444443322 2234555433 3566789999999999999 99999999876
No 51
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.89 E-value=8.2e-22 Score=180.51 Aligned_cols=228 Identities=20% Similarity=0.264 Sum_probs=124.4
Q ss_pred CceeEEEeCCCCC-CCCeEEEEEEEeCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEeccEEEecCChhh-HHHHHHH
Q psy9164 121 GCIESFIEKPQEF-VSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRD-FLKGMCL 198 (380)
Q Consensus 121 ~~v~~~~ek~~~~-~~~~~~~giyi~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i~~~~~-~~~a~~~ 198 (380)
+.+ .|.+++... ..+...++.++++++..+.++.. -.+.-+..|.. +.+....
T Consensus 36 ~~L-sFl~~~k~~~~l~~~~A~a~Iv~~d~~~~~p~~------------------------~~~i~~~~p~~~~~~~~~~ 90 (343)
T PRK00892 36 GQI-SFLANPKYRKQLATTKAGAVIVSPDDAEFVPAG------------------------NALLVVKNPYLAFARLAQL 90 (343)
T ss_pred CeE-EEEcCchhHHHHhccCCeEEEechhhhhhccCC------------------------ceEEEeCCHHHHHHHHHHH
Confidence 455 477765522 24456789999988864433110 01223344543 3333333
Q ss_pred HHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEc
Q psy9164 199 YLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIG 276 (380)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig 276 (380)
+..+.....+..+++.+.+.+++++++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.+ +.||
T Consensus 91 ~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig 170 (343)
T PRK00892 91 FDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIG 170 (343)
T ss_pred hccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEEC
Confidence 32222113344566666666666666666666666666666666666666666665 566666666666666643 5566
Q ss_pred CCCEECCceEEeee--------------eEecceEECccceeCcceEEc----------------cceEECCCeEECcce
Q psy9164 277 WKCVVGQWVRMENI--------------TVLGECIIGWKCVVGQWVRME----------------NITVLGEDVIVQDEL 326 (380)
Q Consensus 277 ~~~~ig~~~~i~~~--------------~~~~~~~ig~~~~ig~~~~i~----------------~~~~ig~~~~ig~~~ 326 (380)
++|.|++++.|+.. .+.++++||+++.||+++.|. +.+.|+++++||+++
T Consensus 171 ~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~ 250 (343)
T PRK00892 171 NRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHT 250 (343)
T ss_pred CCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCc
Confidence 66666666666421 111345555555555544442 222222333333333
Q ss_pred EEcCCeee-cceeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCC-CCc
Q psy9164 327 YVNGGQVL-PHKSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPE-PQI 378 (380)
Q Consensus 327 ~i~~~~v~-~~~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~-~~i 378 (380)
.|++++.+ .+.+||++ .+.+.++++||++++|+++++ |++|+|+ +.+
T Consensus 251 ~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~-----v~~~i~~~~~~ 304 (343)
T PRK00892 251 AIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG-----VTKSIPEPGEY 304 (343)
T ss_pred EEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe-----eCCccCCCCeE
Confidence 33332211 12334443 233355678999999999999 9999999 654
No 52
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.88 E-value=1.6e-21 Score=164.65 Aligned_cols=155 Identities=25% Similarity=0.409 Sum_probs=106.6
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL 293 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~ 293 (380)
...+.++++|++++.|++++.|++++.||++|.|++++.|.++.|++++.|++++.+.++++++++.|++++.|.+
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~---- 84 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP---- 84 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcC----
Confidence 3455677888888888888888888888888888888888888888999998888888888888888888888743
Q ss_pred cceEECccceeCcceEE-----------ccceEECCCeEECcceEEcCCeee-------------c-ceeecCcceeecc
Q psy9164 294 GECIIGWKCVVGQWVRM-----------ENITVLGEDVIVQDELYVNGGQVL-------------P-HKSIGSSLHMLGE 348 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i-----------~~~~~ig~~~~ig~~~~i~~~~v~-------------~-~~~i~~~~~~~~~ 348 (380)
++.|++++.|++++.+ .+.+.+ .++.||.++.|+++++. . +.+|+.++ .+.+
T Consensus 85 -~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~-~i~~ 161 (193)
T cd03353 85 -GTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNS-QLVA 161 (193)
T ss_pred -ccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCC-EEeC
Confidence 3333444443333333 222211 12334444444444322 2 23344443 3356
Q ss_pred eeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164 349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
+++|+++++|+++++ |++|+||+++++
T Consensus 162 ~~~Ig~~~~i~~gs~-----V~~~v~~~~~v~ 188 (193)
T cd03353 162 PVTIGDGATIAAGST-----ITKDVPPGALAI 188 (193)
T ss_pred CcEECCCcEECCCCE-----EccccCCCCEEE
Confidence 789999999999999 999999999874
No 53
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.87 E-value=4.6e-21 Score=166.62 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=85.7
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEE
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRM 287 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i 287 (380)
.+.+.+.+++++.+++++.|+++++|++++.||++|.|+++++|+ ++.||+++.|++++.|.. +.||++|.|++++.|
T Consensus 101 ~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 101 GIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred ccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEE
Confidence 344444444444444444444555555555555555555555554 455555555555555533 566666666666655
Q ss_pred ee--------------eeEecceEECccceeCcceEEccc----eEECCCeE------ECcceEEcCCee-------ecc
Q psy9164 288 EN--------------ITVLGECIIGWKCVVGQWVRMENI----TVLGEDVI------VQDELYVNGGQV-------LPH 336 (380)
Q Consensus 288 ~~--------------~~~~~~~~ig~~~~ig~~~~i~~~----~~ig~~~~------ig~~~~i~~~~v-------~~~ 336 (380)
+. ..+.++++||+++.||.++.|..+ ++|+++++ ||.||.||.++. -+.
T Consensus 181 G~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs 260 (338)
T COG1044 181 GADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGS 260 (338)
T ss_pred ccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeecc
Confidence 42 123345666666655555555433 33333332 233333333322 122
Q ss_pred eeecCc-----ceeecceeEecCceEEeceeeeccccccCCCCCCC
Q psy9164 337 KSIGSS-----LHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQ 377 (380)
Q Consensus 337 ~~i~~~-----~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~ 377 (380)
.+||++ .+-+.+...|+|++.|++.+- |.+++|++.
T Consensus 261 ~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~-----v~~~i~~~~ 301 (338)
T COG1044 261 VKIGKYVIIGGQVGIAGHLEIGDGVTIGARSG-----VMASITEPG 301 (338)
T ss_pred ceECCeEEECcceeecCceEEcCCCEEecccc-----cccccCCCc
Confidence 345554 344455667888888888888 899998875
No 54
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.87 E-value=1.7e-21 Score=159.73 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=108.6
Q ss_pred ccccceeeCCCCEECCCcEECCCc------EECCCCEEcCCcEEe-ceEEccCCEECCCcEe-------------cCeEE
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIK-RSTILRDAIVKSHSWL-------------EGCII 275 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~~i 275 (380)
.|++++.|.|.++|++++.|||.+ .|++++.|+++++|. .+.||+++.|-+.+.| ...+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 344555555555555555554444 444444444455443 5666666666666666 24799
Q ss_pred cCCCEECCceEEeeeeEec--ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164 276 GWKCVVGQWVRMENITVLG--ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ 353 (380)
Q Consensus 276 g~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~ 353 (380)
|+++.|.++++|+.++..+ -+.||+++++..++.+...|+||++|.+-.|+.+++-..+.+..|-.+.+.+-+=|+||
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG 164 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIG 164 (260)
T ss_pred CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEc
Confidence 9999999999999887654 57788888888887777777777777766666665444444444444445555667899
Q ss_pred CceEEeceeeeccccccCCCCCCCcc
Q psy9164 354 DELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 354 ~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++++||+.|. |.+||||+.++
T Consensus 165 ~~amiGg~S~-----v~~DVpPy~~~ 185 (260)
T COG1043 165 AHAMIGGLSA-----VSQDVPPYVIA 185 (260)
T ss_pred chheeccccc-----cccCCCCeEEe
Confidence 9999999999 99999999875
No 55
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=2.7e-20 Score=156.63 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=163.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccc----------c--------c--cCCcEEEEeecCCCCCCchHHHH
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVE----------T--------K--KLGISLVFSHENEPLGTAGPLAL 60 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~----------~--------~--~~~~~i~~~~~~~~~gt~~al~~ 60 (380)
+|+|+.+.+..+|+++++++++.....|.+|+... . + ....++.|+.|.+++|.++|+++
T Consensus 37 ~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~ 116 (291)
T COG1210 37 LIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLC 116 (291)
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHh
Confidence 58999999999999999999999988999988652 0 1 22568889999999999999999
Q ss_pred hHHhhCCCCCcEEEEeCCcccCC---ChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEE----ECCC-CceeEEEeCC
Q psy9164 61 AKDILNKSQEPFFVLNSDIICDF---PFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVL----YNEH-GCIESFIEKP 130 (380)
Q Consensus 61 a~~~i~~~~~~~lv~~gD~i~~~---~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~----~d~~-~~v~~~~ek~ 130 (380)
|+++++ +++|.|+.+|.+... .+++|++.+.+.+.+ ++.+.++ ++.++||++. .+.+ -++..++|||
T Consensus 117 A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP 193 (291)
T COG1210 117 AKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKP 193 (291)
T ss_pred hhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECC
Confidence 999998 889999999987654 389999999888763 4555555 5678999987 3232 4899999998
Q ss_pred C--CCCCCeEEEEEEEeCHhHHhhccCCCCCcc-----cchhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHh
Q psy9164 131 Q--EFVSNKINAGMYIFNPSVLDRIEIKPTSIE-----KEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLN 201 (380)
Q Consensus 131 ~--~~~~~~~~~giyi~~~~~l~~l~~~~~~~~-----~~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~ 201 (380)
. +..|++.-.|.|+|+|++|+.|+....... .|.+..|+++..++++.+.|.-+|+|++..|++++..+..
T Consensus 194 ~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 194 KPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred CCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence 6 678999999999999999999976443322 3467788888999999999999999999999999765543
No 56
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.86 E-value=1.6e-20 Score=161.71 Aligned_cols=146 Identities=17% Similarity=0.286 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCC-----cEEEEeecCCCCCCchHHHHh--HHhhCCCCCcEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG-----ISLVFSHENEPLGTAGPLALA--KDILNKSQEPFF 73 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~-----~~i~~~~~~~~~gt~~al~~a--~~~i~~~~~~~l 73 (380)
||+|+|++|.++|+++|+|+++++.+++++|+.+. ..|+ ..+.+..+++..+++++++.. +..+ +++|+
T Consensus 33 iI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~~~~~~---~~~fl 108 (217)
T cd04197 33 LIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKGLI---RGDFI 108 (217)
T ss_pred hHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc-cccccccCcceEEEEeCCCcCccchHHHHHhhcccc---CCCEE
Confidence 79999999999999999999999999999999873 3332 456777778888999988654 4455 67899
Q ss_pred EEeCCcccCCChHHHHHHHHhc-----CCcEEEEEEEcCCCC------ceeEEEECCC-CceeEEEeCCCCCC-------
Q psy9164 74 VLNSDIICDFPFKDLVSFHKNH-----GKEGTIVVTQVEEPS------KYGVVLYNEH-GCIESFIEKPQEFV------- 134 (380)
Q Consensus 74 v~~gD~i~~~~l~~~l~~h~~~-----~~~~tl~~~~~~~~~------~~g~v~~d~~-~~v~~~~ek~~~~~------- 134 (380)
+++||++++.+++++++.|+++ ++++|+++.+.+++. .++++.+|++ ++++.|.|||....
T Consensus 109 v~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~ 188 (217)
T cd04197 109 LVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLP 188 (217)
T ss_pred EEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccC
Confidence 9999999999999999999884 788999988876654 2578888865 89999999976332
Q ss_pred -------------CCeEEEEEEEeCHhHH
Q psy9164 135 -------------SNKINAGMYIFNPSVL 150 (380)
Q Consensus 135 -------------~~~~~~giyi~~~~~l 150 (380)
+++.++|+|+|+++++
T Consensus 189 ~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 189 SELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred HHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 6889999999999874
No 57
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.85 E-value=3.9e-20 Score=157.85 Aligned_cols=160 Identities=24% Similarity=0.381 Sum_probs=106.2
Q ss_pred CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec--------------------
Q psy9164 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE-------------------- 271 (380)
Q Consensus 213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------------- 271 (380)
+.+.+.+++.|+++++|++++.|++++.||++|.|++++.|. ++.|++++.|++++.|.
T Consensus 12 ~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (205)
T cd03352 12 PNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLG 91 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcc
Confidence 334444444444455555555555555555555555555555 36666666666666652
Q ss_pred CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecc-eeecCcceeeccee
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH-KSIGSSLHMLGEDV 350 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~-~~i~~~~~~~~~~v 350 (380)
.+.|++++.|++++.+.... ...+.||+++.++.++.+..++.++++++++.++.+...+.+.+ ..|+.+ +++.+++
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~-~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~-~~v~~~~ 169 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGA-LGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ-VGIAGHL 169 (205)
T ss_pred eEEECCCEEECCCCEEeccc-cCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC-CEEeCCc
Confidence 36677777777777764432 34677788888888877777777777777777777765554444 445555 4456789
Q ss_pred EecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 351 IVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 351 ~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+|+++++|+++++ |++|+|+++++
T Consensus 170 ~ig~~~~i~~~s~-----v~~~~~~~~~~ 193 (205)
T cd03352 170 TIGDGVVIGAGSG-----VTSIVPPGEYV 193 (205)
T ss_pred EECCCCEEcCCCE-----EeeECCCCCEE
Confidence 9999999999999 99999999876
No 58
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.84 E-value=1.1e-19 Score=149.11 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=110.7
Q ss_pred ccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164 209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i 287 (380)
..+.++..+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.+++|++++.|++++.+
T Consensus 6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i 85 (163)
T cd05636 6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV 85 (163)
T ss_pred cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence 3456677888899999999999999999999999999999999997 799999999999999999999999999998888
Q ss_pred eeeeEecceEECccceeCcceEEcc------------------------ceEECCCeEECcceEEcCCeeecceeecCcc
Q psy9164 288 ENITVLGECIIGWKCVVGQWVRMEN------------------------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSL 343 (380)
Q Consensus 288 ~~~~~~~~~~ig~~~~ig~~~~i~~------------------------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~ 343 (380)
.+++|++++.|++++.+.+ +++|+++++||.++.|
T Consensus 86 ------~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i--------------- 144 (163)
T cd05636 86 ------GDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL--------------- 144 (163)
T ss_pred ------ecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE---------------
Confidence 6677888888888887743 4566666666666666
Q ss_pred eeecceeEecCceEEeceee
Q psy9164 344 HMLGEDVIVQDELYVNGGQV 363 (380)
Q Consensus 344 ~~~~~~v~i~~~~~i~~~~v 363 (380)
.++++|+++++|++|++
T Consensus 145 ---~~g~~ig~~~~i~agsv 161 (163)
T cd05636 145 ---NPGVKIGPGSWVYPGCV 161 (163)
T ss_pred ---CCCcEECCCCEECCCcE
Confidence 55667888888888887
No 59
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.83 E-value=9.8e-20 Score=158.41 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=33.3
Q ss_pred eEEcCCCEECCceEEeee----eEe-------cceEECccceeCcceEEccceEECCCeEECcceEEcCCe-eecceeec
Q psy9164 273 CIIGWKCVVGQWVRMENI----TVL-------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIG 340 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i~~~----~~~-------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~ 340 (380)
++|++++.||.+++|..+ ++. ..+.|+++|.||++|.|..++-|+..+.||.+|.|++.+ +..|..|+
T Consensus 203 V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~Ig 282 (338)
T COG1044 203 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIG 282 (338)
T ss_pred EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEc
Confidence 455566666666555432 111 123333333333333333333344444445555554443 33444555
Q ss_pred Ccceeecc
Q psy9164 341 SSLHMLGE 348 (380)
Q Consensus 341 ~~~~~~~~ 348 (380)
+++.+.+.
T Consensus 283 D~~~I~~~ 290 (338)
T COG1044 283 DGVTIGAR 290 (338)
T ss_pred CCCEEecc
Confidence 55444333
No 60
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.83 E-value=3.9e-20 Score=158.56 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=81.3
Q ss_pred chhhhhhcCCcEEEEEeccEEEecCChhhHHHHHHHHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEEC
Q psy9164 163 EIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG 242 (380)
Q Consensus 163 ~il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig 242 (380)
|.+|.|.+.+ .+...+||.|+ ++|+++++..|......... .........+++.++.|++++.|.+++.||
T Consensus 32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~---~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG 102 (231)
T TIGR03532 32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDR---RNSAIPLLDLKNINARIEPGAIIRDQVIIG 102 (231)
T ss_pred hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecc---cccccccccccccccEECCCCEEeCCeEEC
Confidence 5667776655 77888999999 99999999988765421110 000011112355666666666666677777
Q ss_pred CCCEEcCCcEEe-ceEEccCCEECCCcEec-CeEEcCCCEECCceEEe
Q psy9164 243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRME 288 (380)
Q Consensus 243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~ 288 (380)
++|.|++++.|. +++||++|.|++++.|. ++.||++|.|++++.+.
T Consensus 103 ~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~ 150 (231)
T TIGR03532 103 DNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLA 150 (231)
T ss_pred CCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEc
Confidence 777777777775 67788888888888874 68888888888888884
No 61
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.82 E-value=7.9e-19 Score=152.69 Aligned_cols=184 Identities=23% Similarity=0.403 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+++|+|+++++.+++.+++.+. .++.+.+..+.+..|++++++.+++++ .++|++++||++
T Consensus 31 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~~---~~~~lv~~~D~~ 104 (229)
T cd02523 31 LLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYAETNNIYSLYLARDFL---DEDFLLLEGDVV 104 (229)
T ss_pred HHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchhhhCcHHHHHHHHHHc---CCCEEEEeCCEe
Confidence 68999999999999999999999999999998652 456666655666799999999999999 689999999999
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCC--CceeEEEECCCCceeEEEeCCCCCC-CCeEEEEEEEeCHhHHhhccC--
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEP--SKYGVVLYNEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRIEI-- 155 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~--~~~g~v~~d~~~~v~~~~ek~~~~~-~~~~~~giyi~~~~~l~~l~~-- 155 (380)
++. ++++.|.+++++.|+++.+..+. ..++.... +++++..+.+||.... ..+.++|+|+|+++.++.+.+
T Consensus 105 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~ 180 (229)
T cd02523 105 FDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLD-DAGVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEAL 180 (229)
T ss_pred cCH---HHHHHHHcCCCCCeEEEccCcccccccceeeec-CccceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHH
Confidence 865 56777877888888888763322 33443322 2368889999987543 568999999999999876632
Q ss_pred -------CCCCcccchhhhhhcCCc--EEEEEeccEEEecCChhhHHHH
Q psy9164 156 -------KPTSIEKEIFPLMSKEKQ--LYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 156 -------~~~~~~~~il~~l~~~~~--i~~~~~~~~~~~i~~~~~~~~a 195 (380)
.......++++.++++.+ ++.+.. ++|.+++++++|.++
T Consensus 181 ~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a 228 (229)
T cd02523 181 EELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhh
Confidence 122334568888887444 444444 899999999999865
No 62
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.81 E-value=8.4e-19 Score=158.20 Aligned_cols=137 Identities=22% Similarity=0.315 Sum_probs=82.5
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec---------------------
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE--------------------- 271 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------- 271 (380)
.+.|.++++|++++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|.
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 33344444444444445555555566666666666777776 78888888888888883
Q ss_pred CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceE------------ECCCeEECcceEEcCCe-eeccee
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITV------------LGEDVIVQDELYVNGGQ-VLPHKS 338 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~------------ig~~~~ig~~~~i~~~~-v~~~~~ 338 (380)
.++||+++.||++++|..... ++++||+++.|++.+.|.+++. |..+++||+++++++++ +.++.+
T Consensus 195 ~vvIgd~v~IGa~~~I~r~~~-~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~ 273 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRGAF-DDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLE 273 (324)
T ss_pred eEEECCCcEECCCCEEecCCc-CcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCE
Confidence 378899999999988854332 3344444444444444444444 44445556666666554 455567
Q ss_pred ecCcceeecceeE
Q psy9164 339 IGSSLHMLGEDVI 351 (380)
Q Consensus 339 i~~~~~~~~~~v~ 351 (380)
||+++.+.++.++
T Consensus 274 Ig~~~~ig~~s~V 286 (324)
T TIGR01853 274 IGDNVTIGAKSGV 286 (324)
T ss_pred ECCCCEEccCCEe
Confidence 7777666555444
No 63
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.81 E-value=9.1e-19 Score=160.43 Aligned_cols=135 Identities=20% Similarity=0.297 Sum_probs=75.7
Q ss_pred ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec--------------------CeE
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE--------------------GCI 274 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~ 274 (380)
.|.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|+++|.|++++.|. +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 333334444444444444444455555555555555554 45577777777777773 478
Q ss_pred EcCCCEECCceEEeeeeEecceEECccc------------eeCcceEEccceEECCCeEECcceEEcCCe-eecceeecC
Q psy9164 275 IGWKCVVGQWVRMENITVLGECIIGWKC------------VVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKSIGS 341 (380)
Q Consensus 275 ig~~~~ig~~~~i~~~~~~~~~~ig~~~------------~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-v~~~~~i~~ 341 (380)
||+++.||++++|...+. ++++||+++ .||+++.|..++.|..+++||++++|+.++ +.++.+||+
T Consensus 206 Ig~~v~IGa~~~I~~~~~-~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~ 284 (343)
T PRK00892 206 IGDDVEIGANTTIDRGAL-DDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGD 284 (343)
T ss_pred ECCCcEECCCcEEecCcc-ccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECC
Confidence 888888888888854321 233444444 444444444444444455566666666655 445556777
Q ss_pred cceeecceeE
Q psy9164 342 SLHMLGEDVI 351 (380)
Q Consensus 342 ~~~~~~~~v~ 351 (380)
++.+.++.++
T Consensus 285 ~~~i~~~s~v 294 (343)
T PRK00892 285 GVTITAMSGV 294 (343)
T ss_pred CCEEecCCee
Confidence 6555554443
No 64
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.80 E-value=1.6e-18 Score=147.39 Aligned_cols=152 Identities=26% Similarity=0.527 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcE-----EEEee------cCCCCCCchHHHHhHHhhCCC-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGIS-----LVFSH------ENEPLGTAGPLALAKDILNKS- 68 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~-----i~~~~------~~~~~gt~~al~~a~~~i~~~- 68 (380)
||+|+|++|.++|+++++|+++++.+++.+++.+ ...|+++ +.+.. +++.+||+++++.+++++.+.
T Consensus 32 li~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~ 110 (200)
T cd02508 32 LIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGS-GKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSD 110 (200)
T ss_pred eHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhC-CCcccCCCCCCCEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999976 3334432 22222 457899999999999998422
Q ss_pred CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHh
Q psy9164 69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPS 148 (380)
Q Consensus 69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~ 148 (380)
.++|++++||++++.+++++++.|+++++.+|+++. +++|+|+|+++
T Consensus 111 ~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~---------------------------------~~~g~yi~~~~ 157 (200)
T cd02508 111 PEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK---------------------------------ASMGIYIFSKD 157 (200)
T ss_pred CCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh---------------------------------hcCEEEEEEHH
Confidence 367999999999999999999999998888887664 68999999999
Q ss_pred HHhh-ccC----CCCCcccchhhhhhcCCcEEEEEeccEEEec
Q psy9164 149 VLDR-IEI----KPTSIEKEIFPLMSKEKQLYAMELKGFWMDV 186 (380)
Q Consensus 149 ~l~~-l~~----~~~~~~~~il~~l~~~~~i~~~~~~~~~~~i 186 (380)
+|.. ++. +...+..|+++.++++++++++..+++|.|+
T Consensus 158 ~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 158 LLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 9854 432 2334556899999988999999999999875
No 65
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.80 E-value=7.8e-18 Score=146.68 Aligned_cols=185 Identities=18% Similarity=0.314 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCCh---HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRA---EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
||+|+|+.|.++|++++++++++.. +.+.+++... ..++++.+ .++..+||+++++.++..+. .+++|++++|
T Consensus 31 li~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~g~~~~l~~a~~~l~-~~~~~lv~~~ 106 (231)
T cd04183 31 MIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE-LDGETLGAACTVLLAADLID-NDDPLLIFNC 106 (231)
T ss_pred HHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE-eCCCCCcHHHHHHHHHhhcC-CCCCEEEEec
Confidence 6899999999999999999886421 3334444321 22456643 45578999999999999983 2478999999
Q ss_pred CcccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHh-HH-hhccC
Q psy9164 78 DIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPS-VL-DRIEI 155 (380)
Q Consensus 78 D~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~-~l-~~l~~ 155 (380)
|++++.++.++++.|.+.+...++++... +...|+.+.+|+++++..+.||+. .+.+.++|+|+|+++ .| +.+..
T Consensus 107 D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~ 183 (231)
T cd04183 107 DQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDENGRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKK 183 (231)
T ss_pred ceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCCCCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHH
Confidence 99999999999999988777777766654 556899999998999999998853 457899999999987 43 33321
Q ss_pred ----C---CC-CcccchhhhhhcCC-cEEEEEe-ccEEEecCChhhH
Q psy9164 156 ----K---PT-SIEKEIFPLMSKEK-QLYAMEL-KGFWMDVGQPRDF 192 (380)
Q Consensus 156 ----~---~~-~~~~~il~~l~~~~-~i~~~~~-~~~~~~i~~~~~~ 192 (380)
. .. ....++++.+++++ ++.++.+ .++|.++++|++|
T Consensus 184 ~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 184 MIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 1 11 12356888888776 6999999 6899999999886
No 66
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.78 E-value=8.7e-18 Score=146.28 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=47.0
Q ss_pred eEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCee-
Q psy9164 256 STILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV- 333 (380)
Q Consensus 256 ~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v- 333 (380)
..||+++.|++++.|.. +.++..+.||++|.+. .++.|+++|.||+++.+.+++.+..++.||++++|++++.
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~-----~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLM-----AYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceec-----cCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 34555555555555532 3344444555555442 3444555555555555555555555566666666665543
Q ss_pred ecceeecCcceeeccee
Q psy9164 334 LPHKSIGSSLHMLGEDV 350 (380)
Q Consensus 334 ~~~~~i~~~~~~~~~~v 350 (380)
.+..+||+++++.+..+
T Consensus 153 ~~~~~IG~~a~Vg~gs~ 169 (255)
T PRK12461 153 HQFCRIGALAMMAGGSR 169 (255)
T ss_pred CCCCEECCCcEECCCce
Confidence 33345555555444433
No 67
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.76 E-value=1.4e-17 Score=146.47 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=49.8
Q ss_pred eEEcCCCEECCceEEeeeeEe-------cceEECccceeCcceEEccc-------eEECCCeEECcceEEcCCeeeccee
Q psy9164 273 CIIGWKCVVGQWVRMENITVL-------GECIIGWKCVVGQWVRMENI-------TVLGEDVIVQDELYVNGGQVLPHKS 338 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i~~~~~~-------~~~~ig~~~~ig~~~~i~~~-------~~ig~~~~ig~~~~i~~~~v~~~~~ 338 (380)
+.||++|.|++++.|++.+.. ..+.||+++.|++++.|..+ +.||+++.|++++.|+.++++++..
T Consensus 51 ~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v 130 (262)
T PRK05289 51 TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHV 130 (262)
T ss_pred cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCe
Confidence 455555555555555432111 14666666666666666543 3555555555555555555444433
Q ss_pred ecCcceeecceeEecCceEEeceee
Q psy9164 339 IGSSLHMLGEDVIVQDELYVNGGQV 363 (380)
Q Consensus 339 i~~~~~~~~~~v~i~~~~~i~~~~v 363 (380)
+-.+.+.+.++++|++++.||++++
T Consensus 131 ~i~~~~~i~g~v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 131 ILANNATLAGHVEVGDYAIIGGLTA 155 (262)
T ss_pred EECCccccccccccCCcEEEeecce
Confidence 3333344556667777777776666
No 68
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.76 E-value=4.2e-17 Score=141.90 Aligned_cols=185 Identities=22% Similarity=0.362 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+|++|.++|++++++++++..+++.+++.+ .+ +.+..+++..|++++++++.+++....++|++++||.
T Consensus 28 li~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~--~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p 101 (229)
T cd02540 28 MLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PN--VEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVP 101 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CC--cEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCcc
Confidence 6899999999999999999999999999999865 23 3445566778999999999999842236799999998
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCC----CCCeEEEEEEEeCHhHH-hhc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEF----VSNKINAGMYIFNPSVL-DRI 153 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~----~~~~~~~giyi~~~~~l-~~l 153 (380)
+.+.++.++++.|++.++++++...+.+++..|+.+..++++++..+.|+|... ...++++|+|+|+++.+ +.+
T Consensus 102 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l 181 (229)
T cd02540 102 LITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEAL 181 (229)
T ss_pred ccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHH
Confidence 456779999999988777788887888888889988888788999999987422 23688999999998765 444
Q ss_pred cCC------CCCcccchhhhhhcCC-cEEEEEeccE--EEecCChhh
Q psy9164 154 EIK------PTSIEKEIFPLMSKEK-QLYAMELKGF--WMDVGQPRD 191 (380)
Q Consensus 154 ~~~------~~~~~~~il~~l~~~~-~i~~~~~~~~--~~~i~~~~~ 191 (380)
+.. ......++++.+++++ ++.++..+|+ |+.+++|.+
T Consensus 182 ~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 182 PKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 321 1122346788888776 6999999765 677887754
No 69
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.76 E-value=1.4e-17 Score=132.48 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=56.6
Q ss_pred CeEEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecc
Q psy9164 272 GCIIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGE 348 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~ 348 (380)
++.||++|.|++++.+.... ....+.|+++++|+.++.+..++.||+++.||+++.| .+
T Consensus 49 ~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V------------------~~ 110 (139)
T cd03350 49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVL------------------TQ 110 (139)
T ss_pred CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEE------------------cC
Confidence 34566666666666664211 1245777778888877777777777777777776666 44
Q ss_pred eeEecCceEEeceeeeccccccCCCCCC-Ccc
Q psy9164 349 DVIVQDELYVNGGQVLPHKSIGSSVPEP-QII 379 (380)
Q Consensus 349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~-~iv 379 (380)
+++|+++ +++++ |+||+|++ +++
T Consensus 111 ~~~I~~~---~~~~~-----v~~~~~~~~~~~ 134 (139)
T cd03350 111 STPIYDR---ETGEI-----YYGRVPPGSVVV 134 (139)
T ss_pred CeEeccc---CcccE-----EecccCCCCEEe
Confidence 5668887 99999 99999999 544
No 70
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.76 E-value=1.4e-17 Score=135.82 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=84.0
Q ss_pred eCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecCeEE-----cCCCEECCceEEeeeeEe
Q psy9164 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEGCII-----GWKCVVGQWVRMENITVL 293 (380)
Q Consensus 223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~~i-----g~~~~ig~~~~i~~~~~~ 293 (380)
|++++.|.+++.|.+++.||++|.|++++.|. .++||++|.|++++.|.+... +.++.||+++.+....+.
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 45555555555555666666667776666663 468888888888888865433 334444444444443334
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV 363 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v 363 (380)
.++.||++++||.++.+..+++||++++||+++.| .+++++++++++++++.
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV------------------~~~~~i~~~~vi~g~~~ 133 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKL------------------PSSEILPENTVIYGADC 133 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEE------------------CCCcEECCCeEEeCCce
Confidence 66888999999988888888888888887777777 34455778888877766
No 71
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.75 E-value=6.4e-17 Score=141.64 Aligned_cols=189 Identities=21% Similarity=0.306 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|+.|.++ |+++|+|++++ +.+.+++.+ +++++.+..+.+..||++ +..+...+....+.||+++||.
T Consensus 28 ll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~ 100 (239)
T cd02517 28 MIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDE 100 (239)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCC
Confidence 689999999999 99999998764 677787754 356776666666778875 6666666631125699999996
Q ss_pred --ccCCChHHHHHHHHhc-CCcEEEEEEEcCCCC---ceeE--EEECCCCceeEEEeCCC-------CCCCCeEEEEEEE
Q psy9164 80 --ICDFPFKDLVSFHKNH-GKEGTIVVTQVEEPS---KYGV--VLYNEHGCIESFIEKPQ-------EFVSNKINAGMYI 144 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~-~~~~tl~~~~~~~~~---~~g~--v~~d~~~~v~~~~ek~~-------~~~~~~~~~giyi 144 (380)
+...+++.+++.|++. +.++++++.+.+++. .++. +..+++++++.|.++|. +..++++++|+|+
T Consensus 101 Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~ 180 (239)
T cd02517 101 PLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYA 180 (239)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCCCCCCceeEEEEEEE
Confidence 5567799999988776 677888887776554 3333 56677889999987542 1246799999999
Q ss_pred eCHhHHhhccCC-CCCcc-cchhh--hhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164 145 FNPSVLDRIEIK-PTSIE-KEIFP--LMSKEK-QLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 145 ~~~~~l~~l~~~-~~~~~-~~il~--~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
|+++.++.+... ...+. .+.++ .+++++ ++.++...++|.++++|++|.++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~ 237 (239)
T cd02517 181 YRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVE 237 (239)
T ss_pred ECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHH
Confidence 999999877542 11111 12222 345555 588888889999999999998774
No 72
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.75 E-value=2.4e-17 Score=144.88 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=78.4
Q ss_pred cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-------------ceEEccCCEECCCcEecC--------eEEcC
Q psy9164 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-------------RSTILRDAIVKSHSWLEG--------CIIGW 277 (380)
Q Consensus 219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ig~ 277 (380)
++++|++++.|++++.|++++.||++|.|++++.|. ++.||++|.|++++.|.. +.||+
T Consensus 28 ~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~ 107 (254)
T cd03351 28 PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGN 107 (254)
T ss_pred CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECC
Confidence 333334444444444444455666666666666664 467888888888888853 66666
Q ss_pred CCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceeecCcceeecceeEecCce
Q psy9164 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHMLGEDVIVQDEL 356 (380)
Q Consensus 278 ~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~~~~~v~i~~~~ 356 (380)
++.|+++++|. .++.||+++.|++++.+..+++||++++||.++.|..++.+ ++..|+.++++... |++++
T Consensus 108 ~~~I~~~~~I~-----~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~---i~~~~ 179 (254)
T cd03351 108 NNLLMAYVHVA-----HDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD---VPPYV 179 (254)
T ss_pred CCEECCCCEEC-----CCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee---cCCCe
Confidence 66666666662 45666666666666666666666666666666555544322 22333333333322 56677
Q ss_pred EEeceee
Q psy9164 357 YVNGGQV 363 (380)
Q Consensus 357 ~i~~~~v 363 (380)
++++.+.
T Consensus 180 ~~~G~~~ 186 (254)
T cd03351 180 IAAGNRA 186 (254)
T ss_pred EEEccCC
Confidence 7665544
No 73
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.75 E-value=3.9e-17 Score=143.52 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-------------ceEEccCCEECCCcEecC-------
Q psy9164 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-------------RSTILRDAIVKSHSWLEG------- 272 (380)
Q Consensus 213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~------- 272 (380)
+.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|+ +++||++|.|++++.|..
T Consensus 21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~ 100 (254)
T TIGR01852 21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG 100 (254)
T ss_pred CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence 333444444445555555555555567777888888888885 578999999999998853
Q ss_pred -eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeee-cceeecCcceeeccee
Q psy9164 273 -CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL-PHKSIGSSLHMLGEDV 350 (380)
Q Consensus 273 -~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~-~~~~i~~~~~~~~~~v 350 (380)
+.||+++.|+++++|. .+|.||+++++++++.+..+++||++++||.++.|.+++.+ ++..|+.++++-..
T Consensus 101 ~~~IG~~~~I~~~~~I~-----~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~-- 173 (254)
T TIGR01852 101 VTRIGNNNLLMAYSHIA-----HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD-- 173 (254)
T ss_pred cEEECCCCEECCCCEEc-----cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--
Confidence 4666666666666652 45666666666666666666666666666666655544322 22233333333222
Q ss_pred EecCceEEece
Q psy9164 351 IVQDELYVNGG 361 (380)
Q Consensus 351 ~i~~~~~i~~~ 361 (380)
|++++++++.
T Consensus 174 -i~~~~~~~G~ 183 (254)
T TIGR01852 174 -VPPYGLVEGN 183 (254)
T ss_pred -cCCCcEEecC
Confidence 5666666544
No 74
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=130.27 Aligned_cols=125 Identities=25% Similarity=0.347 Sum_probs=97.7
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----CeEEcCCCEECCceEEe
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRME 288 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~ 288 (380)
.+.|++++|++|++.|-.++.|++++.|+++++++.+. ....||+++.|.+++.++ .+.||++++||+++.|
T Consensus 11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv- 87 (176)
T COG0663 11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVV- 87 (176)
T ss_pred CCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEE-
Confidence 45677888888888888788888888887777776654 577899999999999884 5889999999999888
Q ss_pred eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 289 NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 289 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
.+|.||+++.||.++.+.+++.||+++.||+++.|..+. .++++..++|.|++
T Consensus 88 -----HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k-----~~p~~~L~~G~Pak 140 (176)
T COG0663 88 -----HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK-----EIPGGSLVVGSPAK 140 (176)
T ss_pred -----EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCc-----CCCCCeEeecCcce
Confidence 569999999999998888888888888877777775443 44455555555544
No 75
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.74 E-value=1.1e-16 Score=136.52 Aligned_cols=139 Identities=23% Similarity=0.371 Sum_probs=84.5
Q ss_pred CCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecC-eEEcCCCEECCceEEeee-------------
Q psy9164 226 TATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENI------------- 290 (380)
Q Consensus 226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~------------- 290 (380)
++.|++.+.|++++.||++|.|++++.|. ++.|+++|.|++++.+.. +.|++++.|++++.|...
T Consensus 7 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~ 86 (205)
T cd03352 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVK 86 (205)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEE
Confidence 33333333333333334444444444442 344455555555555543 677777777777777431
Q ss_pred -eEecceEECccceeCcceEEc----cceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeee
Q psy9164 291 -TVLGECIIGWKCVVGQWVRME----NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVL 364 (380)
Q Consensus 291 -~~~~~~~ig~~~~ig~~~~i~----~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~ 364 (380)
...+.+.|++++.++.++.+. ..+.|++++.++.++.|++++.++...+-...+.+.++++|++++.|++++++
T Consensus 87 ~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v 165 (205)
T cd03352 87 IPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGI 165 (205)
T ss_pred cCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEE
Confidence 112467888888888888875 35778888888888888777665554333333445668888888888888875
No 76
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.74 E-value=1.9e-17 Score=142.27 Aligned_cols=147 Identities=20% Similarity=0.331 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccc-----cCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-----KLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
||+|+|++|.++|+++++|++++..+++.+++.+... ..++.+.+..+.+..||+++++++++++ +++|+++
T Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~~~~i---~~dflv~ 109 (216)
T cd02507 33 LIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLI---RSDFLLL 109 (216)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHHhhcC---CCCEEEE
Confidence 6899999999999999999999999999999976321 1234555666778999999999999999 7899999
Q ss_pred eCCcccCCChHHHHHH--HHhcCCcEEEEEEEc--CC-------CCceeEEEECCC---CceeEEEeCCCC---------
Q psy9164 76 NSDIICDFPFKDLVSF--HKNHGKEGTIVVTQV--EE-------PSKYGVVLYNEH---GCIESFIEKPQE--------- 132 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~--h~~~~~~~tl~~~~~--~~-------~~~~g~v~~d~~---~~v~~~~ek~~~--------- 132 (380)
+||++++.++.++++. +..+++.+++.+... ++ ...++.+..|++ .++..+.+++.+
T Consensus 110 ~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (216)
T cd02507 110 SCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKS 189 (216)
T ss_pred eCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHH
Confidence 9999999999999965 444555556554443 22 345788888876 467777765442
Q ss_pred ---------CCCCeEEEEEEEeCHhHH
Q psy9164 133 ---------FVSNKINAGMYIFNPSVL 150 (380)
Q Consensus 133 ---------~~~~~~~~giyi~~~~~l 150 (380)
..+++.|+|+|+|+++++
T Consensus 190 ~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 190 LLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred HHhcCCCEEEEcCcccccEEEecCcCC
Confidence 345889999999999874
No 77
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.74 E-value=3e-17 Score=134.93 Aligned_cols=139 Identities=26% Similarity=0.334 Sum_probs=115.5
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEe-----
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVL----- 293 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~----- 293 (380)
.+.|+|++.|.+++.|++++.||+.|.|++++.| ++++.|+++++|+. +.||.++.|-+++.|+..++.
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg 77 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence 5678888888888888888888888888887776 67777777777754 899999999999999764432
Q ss_pred --cceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164 294 --GECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV 363 (380)
Q Consensus 294 --~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v 363 (380)
...+||+++.|.+++.|.. -+.||++.++.+++.|..++++++..|-.|.+.+++.|.|+|.+++|+.+.
T Consensus 78 e~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~sa 156 (260)
T COG1043 78 EPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSA 156 (260)
T ss_pred CceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcce
Confidence 3688999999999999953 356888888888888888888888888888899999999999999998876
No 78
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.72 E-value=1.1e-16 Score=131.21 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=91.8
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~ 289 (380)
.+.+++.+.++++|++++.|++++.|+++++||++|.|++++.|.++++++++.|+.++.+.+++|++++.|++++.+.+
T Consensus 25 ~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 25 IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred EECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence 34455566677888888888888888888999999999999999999999999999999999999999999999999865
Q ss_pred eeEe-------------------cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 290 ITVL-------------------GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 290 ~~~~-------------------~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..+. .+++||++++||.++.+.+++.|+++++|++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 105 LRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred cCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 3221 14566666666666666655555555555555443
No 79
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.72 E-value=6e-16 Score=136.03 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHh-hCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDI-LNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~-i~~~~~~~lv~~gD~ 79 (380)
||+|+++.|.++|+++|+|++++ +.+.+++.. .+.++.+..++...||+.....+... .. ..+.+++++||+
T Consensus 29 ll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~~~~gt~~~~~~~~~~~~~-~~~~vlv~~~D~ 101 (245)
T PRK05450 29 MIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPDHPSGTDRIAEAAAKLGLA-DDDIVVNVQGDE 101 (245)
T ss_pred HHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCcCCCchHHHHHHHHhcCCC-CCCEEEEecCCC
Confidence 68999999999999999998763 667777743 35677666667777877654433332 21 134588899998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEc------CCCCceeEEEECCCCceeEEEeCCCC----------CCCCeEEEE
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQV------EEPSKYGVVLYNEHGCIESFIEKPQE----------FVSNKINAG 141 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~------~~~~~~g~v~~d~~~~v~~~~ek~~~----------~~~~~~~~g 141 (380)
+....++++++.|++++++.++++.+. .++..++++ +|++++++.|.|||.. ..+++.++|
T Consensus 102 Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~G 180 (245)
T PRK05450 102 PLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAFADSAPTPVYRHIG 180 (245)
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCccccccCccccEEEE
Confidence 445668999999887766666666655 345556654 8888999999999731 235899999
Q ss_pred EEEeCHhHHhhccCCCCCc----cc-chhhhhhcCCcEEEEEecc-EEEecCChhhHHHHHHH
Q psy9164 142 MYIFNPSVLDRIEIKPTSI----EK-EIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGMCL 198 (380)
Q Consensus 142 iyi~~~~~l~~l~~~~~~~----~~-~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~~~ 198 (380)
+|+|+++.++.+....... .. ++++.+.+..++.++..++ +|.++++|++|.+++..
T Consensus 181 iy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~ 243 (245)
T PRK05450 181 IYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRAL 243 (245)
T ss_pred EEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 9999999998775322111 11 1233333444788999986 89999999999988754
No 80
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.72 E-value=7.4e-17 Score=138.15 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=42.6
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceee
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQV 363 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v 363 (380)
..++||++|+||.++.|.++++||+++.||++++|+.++.+-....| .+..+ .|+++++|-+|+.
T Consensus 172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g--~v~~~---~vp~~svv~~g~~ 236 (269)
T TIGR00965 172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETG--EIHYG---RVPAGSVVVSGNL 236 (269)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCC--ceeee---ecCCCcEEecCCe
Confidence 45788888888888888888888888888888888766644433211 11111 2666666655543
No 81
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.72 E-value=7.9e-17 Score=135.75 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=96.4
Q ss_pred eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecc-eE---
Q psy9164 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE-CI--- 297 (380)
Q Consensus 222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-~~--- 297 (380)
.+++++.|++++.|. ++.||++|.|+++|.|.+++||+++.|++++.+.++.||++|.|++++.|.+..+.-. ..
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 346677777788885 6889999999999999999999999999999999999999999999999965322100 00
Q ss_pred -------ECccceeCcc---eEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccc
Q psy9164 298 -------IGWKCVVGQW---VRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHK 367 (380)
Q Consensus 298 -------ig~~~~ig~~---~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~ 367 (380)
.-+....+.. -....+++||++++||.++.| .++++||++++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I------------------~~gv~Ig~~~~I~~gs~---- 140 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVI------------------LPGVTIGNGAVIAAGAV---- 140 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEE------------------CCCCEECCCCEECCCCE----
Confidence 0000000000 002345667777777777776 55667888888888888
Q ss_pred cccCCCCCCCcc
Q psy9164 368 SIGSSVPEPQII 379 (380)
Q Consensus 368 ~v~~~vp~~~iv 379 (380)
|++|+|+++++
T Consensus 141 -v~~~i~~~~~~ 151 (204)
T TIGR03308 141 -VTKDVAPYTIV 151 (204)
T ss_pred -ECCCCCCCcEE
Confidence 88888888775
No 82
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.71 E-value=2.4e-16 Score=129.36 Aligned_cols=124 Identities=22% Similarity=0.336 Sum_probs=82.8
Q ss_pred eCCCCEECCCcEECCCcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeeeeE
Q psy9164 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENITV 292 (380)
Q Consensus 223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~~~ 292 (380)
|++++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++++.+. .+.||+++.|++++.+
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i----- 79 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIV----- 79 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEE-----
Confidence 34444444444444455555555555555553 46788888888888883 4778888888888777
Q ss_pred ecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC
Q psy9164 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS 372 (380)
Q Consensus 293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~ 372 (380)
.+.+.||++++||.++.+. ++.||++++||+++.|. +++|+++++++++++ +.++
T Consensus 80 ~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-------------------~~~i~~~~~v~~~~~-----v~~~ 134 (167)
T cd00710 80 HGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-------------------GVEIPPGRYVPAGAV-----ITSQ 134 (167)
T ss_pred eCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-------------------CCEeCCCCEECCCCE-----EcCC
Confidence 3468888888888888876 36667776666666551 245888888888888 5555
Q ss_pred CCCC
Q psy9164 373 VPEP 376 (380)
Q Consensus 373 vp~~ 376 (380)
.|++
T Consensus 135 ~~~~ 138 (167)
T cd00710 135 TQAD 138 (167)
T ss_pred Cccc
Confidence 5544
No 83
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.70 E-value=2.3e-16 Score=135.39 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHcccc--ccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYR-AEQMEDELTVET--KKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~--~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
||+|+|++|.++|+++|+|++++. .+++++++.+.. ......+.+..+.+.+||+++++.+.+.+ +++|+|++|
T Consensus 33 li~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i---~~d~lv~~~ 109 (214)
T cd04198 33 MIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKI---KKDFLVLSC 109 (214)
T ss_pred HHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhc---CCCEEEEeC
Confidence 689999999999999999999975 467888886531 11234455566788999999999999998 788999999
Q ss_pred CcccCCChHHHHHHHHhcCCcEEEEEEEcCCC-------------CceeEEEEC-CCCceeEEEeC--------------
Q psy9164 78 DIICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-------------SKYGVVLYN-EHGCIESFIEK-------------- 129 (380)
Q Consensus 78 D~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-------------~~~g~v~~d-~~~~v~~~~ek-------------- 129 (380)
|.+++.++.++++.|+++++.+|+++.+.... ..+.++..| ++++++.+...
T Consensus 110 D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l 189 (214)
T cd04198 110 DLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLL 189 (214)
T ss_pred ccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHH
Confidence 99999999999999999999999988775321 235667777 44677766542
Q ss_pred ---CC-CCCCCeEEEEEEEeCHhHH
Q psy9164 130 ---PQ-EFVSNKINAGMYIFNPSVL 150 (380)
Q Consensus 130 ---~~-~~~~~~~~~giyi~~~~~l 150 (380)
|. ...+++.|+|+|+|+++++
T Consensus 190 ~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 190 KRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred HhCCCEEEEcCcccceEEEEEeeeC
Confidence 22 3456899999999999874
No 84
>PLN02296 carbonate dehydratase
Probab=99.69 E-value=4e-16 Score=136.02 Aligned_cols=107 Identities=19% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----------CeEEcCCCEEC
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----------GCIIGWKCVVG 282 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~ig~~~~ig 282 (380)
.+.++++++|+|++.+..++.|++++.|+++|.|...+ .+++||++|.|++++.|. +++||++|.|+
T Consensus 52 ~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~--~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG 129 (269)
T PLN02296 52 APVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV--NSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIG 129 (269)
T ss_pred CCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC--CceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEEC
Confidence 44555666666666655555555555555555444332 245788888888888874 57888888888
Q ss_pred CceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 283 ~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
++|.+ .+|.||++++||.++.+.++++|++++.|++++.|
T Consensus 130 ~~avI------~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV 169 (269)
T PLN02296 130 HSAVL------HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALV 169 (269)
T ss_pred CCcee------cCCEECCCcEECCCcEECCCeEECCCCEECCCCEE
Confidence 88877 56888888888888777777777777776666666
No 85
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.68 E-value=1.9e-15 Score=127.61 Aligned_cols=119 Identities=28% Similarity=0.462 Sum_probs=78.1
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEee-
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN- 289 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~- 289 (380)
.+.+.+.+++.|++++.|++++.|. ++.|+++|.|++++.+.++++++++.|++++.+. ++.|++++.|++++.+.+
T Consensus 25 ~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s 103 (193)
T cd03353 25 DPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKS 103 (193)
T ss_pred CCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecc
Confidence 3334444444555555555555554 3378888888888888899999999999999986 588888888777766643
Q ss_pred ----------eeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCC
Q psy9164 290 ----------ITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGG 331 (380)
Q Consensus 290 ----------~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~ 331 (380)
..+.+++.||+++.||+++.+.+ .++||+++++|.++.+.++
T Consensus 104 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~ 162 (193)
T cd03353 104 TIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP 162 (193)
T ss_pred eEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC
Confidence 23334566666666666665532 4556666666666655433
No 86
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.68 E-value=8.9e-16 Score=124.52 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=71.8
Q ss_pred CCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe-----cCeEEcCCCEECCceEEeeeeEec
Q psy9164 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL-----EGCIIGWKCVVGQWVRMENITVLG 294 (380)
Q Consensus 224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~ig~~~~ig~~~~i~~~~~~~ 294 (380)
++++.+++++.|.+++.||++|.|+++|.|. ++.||++|.|+++|.| .+++|++++.|++++.+ .
T Consensus 4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i------~ 77 (155)
T cd04745 4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAIL------H 77 (155)
T ss_pred CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEE------E
Confidence 4444555555555566666666666666665 4788999999999988 55788888888888777 5
Q ss_pred ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
++.||++++||.++.+..++.|+++++||+++.+.
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~ 112 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVK 112 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeC
Confidence 78888888888887777777777777766666653
No 87
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.68 E-value=6.6e-16 Score=133.78 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=50.8
Q ss_pred EEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164 274 IIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV 350 (380)
Q Consensus 274 ~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v 350 (380)
.||+++.|++++.|++.. ....++||++|+||.++.+..+++||+++.||+++.|+.++.+.+.. .+.++.+.
T Consensus 152 ~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~--~g~v~~g~-- 227 (272)
T PRK11830 152 QIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE--TGEVHYGR-- 227 (272)
T ss_pred EECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC--CCcEEeee--
Confidence 445555555555443211 11258888888888888888888888888888888887665444321 11222222
Q ss_pred EecCceEEecee
Q psy9164 351 IVQDELYVNGGQ 362 (380)
Q Consensus 351 ~i~~~~~i~~~~ 362 (380)
|++++++-+|+
T Consensus 228 -vp~~svvv~g~ 238 (272)
T PRK11830 228 -VPAGSVVVPGS 238 (272)
T ss_pred -cCCCcEEecCc
Confidence 66666665554
No 88
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.67 E-value=1.1e-15 Score=127.14 Aligned_cols=105 Identities=21% Similarity=0.339 Sum_probs=74.7
Q ss_pred CccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEe-----cCeEEcCCCEECCce
Q psy9164 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWL-----EGCIIGWKCVVGQWV 285 (380)
Q Consensus 215 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~ig~~~~ig~~~ 285 (380)
+.|+++++|++++.+. ++++||++|.|+++|.|. .++||++|.|+++|.| .+++|++++.|++++
T Consensus 9 p~i~~~~~I~~~a~I~------G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a 82 (192)
T TIGR02287 9 PVVHPEAYVHPTAVLI------GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGA 82 (192)
T ss_pred CcCCCCcEECCCCEEE------eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCC
Confidence 3444555555555544 445555555555555553 5788899999988888 457888888888887
Q ss_pred EEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164 286 RMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331 (380)
Q Consensus 286 ~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 331 (380)
.| .+++|++++.||.++.+.++++||+++.|++++.+..+
T Consensus 83 ~I------~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 83 IL------HGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred EE------cCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 77 77899999999998888887888888777777766443
No 89
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.67 E-value=8.1e-16 Score=124.60 Aligned_cols=99 Identities=28% Similarity=0.396 Sum_probs=73.9
Q ss_pred CCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecC-----eEEcCCCEECCceEEeeeeEec
Q psy9164 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEG-----CIIGWKCVVGQWVRMENITVLG 294 (380)
Q Consensus 224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~i~~~~~~~ 294 (380)
++++.|++++.|.+++.+|++|.|++++.|. +++||+++.|+++++|.. ++|++++.|+.+|.+ .
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i------~ 76 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL------H 76 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE------e
Confidence 4455555555555566666666666666665 468999999999999976 589999999988888 4
Q ss_pred ceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
++.+|++++|+.++.+..+++|+++++|++++.+
T Consensus 77 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v 110 (153)
T cd04645 77 GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV 110 (153)
T ss_pred eeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 5788888888888877777777777777766666
No 90
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.67 E-value=8.4e-16 Score=124.13 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCCCEECCCcEECCCcEECCCCEEcCCcEEec----eEEccCCEECCCcEecC-----eEEcCCCEECCceEEeeeeEec
Q psy9164 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR----STILRDAIVKSHSWLEG-----CIIGWKCVVGQWVRMENITVLG 294 (380)
Q Consensus 224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~ig~~~~ig~~~~i~~~~~~~ 294 (380)
.+++.+.+++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++||+++.|++++.+ .
T Consensus 4 ~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i------~ 77 (154)
T cd04650 4 SPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVV------H 77 (154)
T ss_pred CCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEE------E
Confidence 34444555555555566666666666666653 58888899988888854 788888888888887 5
Q ss_pred ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
++.||++++|+.++.+..+++|++++++++++.+.
T Consensus 78 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 78 GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred CcEECCCCEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 67888888888888888778888888877777663
No 91
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=145.13 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=85.8
Q ss_pred cccCCCccccceeeCCCCEECCCcEECC-----CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECC
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGP-----NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~ 283 (380)
.+.++..|.++++|++++.|+++|.|++ +++||++|.|++++.|. +++||++|.|++++.+.++.|++++.+++
T Consensus 270 ~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~ 349 (446)
T PRK14353 270 VIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNH 349 (446)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECC
Confidence 4555666666677777777777777765 56788888888888887 78899999999999888888888888888
Q ss_pred ceEEeeeeEecceEECccceeCcceEE-------ccceEECCCeEECcceEEcCC
Q psy9164 284 WVRMENITVLGECIIGWKCVVGQWVRM-------ENITVLGEDVIVQDELYVNGG 331 (380)
Q Consensus 284 ~~~i~~~~~~~~~~ig~~~~ig~~~~i-------~~~~~ig~~~~ig~~~~i~~~ 331 (380)
.+.+ +++.||+++.||.++.+ ..+++||++++||.++.|.++
T Consensus 350 ~~~i------~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 350 LTYI------GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred eeEE------cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 8777 56777888888887766 224566666666666655444
No 92
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=9.8e-16 Score=125.01 Aligned_cols=101 Identities=25% Similarity=0.341 Sum_probs=61.9
Q ss_pred ceEEccCCEECCCcEec----CeEEcCCCEECCceEEeeeeE-----ecceEECccceeCcceEEccceEECCCeEECcc
Q psy9164 255 RSTILRDAIVKSHSWLE----GCIIGWKCVVGQWVRMENITV-----LGECIIGWKCVVGQWVRMENITVLGEDVIVQDE 325 (380)
Q Consensus 255 ~~~i~~~~~i~~~~~i~----~~~ig~~~~ig~~~~i~~~~~-----~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~ 325 (380)
++.||+++.|++++.+. .+.||++|.|+++|.|.+... ..++.||+++.+..++.+.. ++||++++||++
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~ 95 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESK 95 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCC
Confidence 34445555555555552 357777777777777754322 23456666666666666655 667777777776
Q ss_pred eEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCC--CCCCCcc
Q psy9164 326 LYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSS--VPEPQII 379 (380)
Q Consensus 326 ~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~--vp~~~iv 379 (380)
+.| +++++|+++++||++++ |.++ +|+++++
T Consensus 96 a~I------------------~~gv~Ig~~~~Igagsv-----V~~~~~i~~~~vi 128 (164)
T cd04646 96 SFV------------------GKNVIITDGCIIGAGCK-----LPSSEILPENTVI 128 (164)
T ss_pred CEE------------------CCCCEECCCCEEeCCeE-----ECCCcEECCCeEE
Confidence 666 34555677777777776 5555 5666554
No 93
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.66 E-value=1.8e-15 Score=126.34 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=74.6
Q ss_pred ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----CeEEcCCCEECCceEEeee
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----GCIIGWKCVVGQWVRMENI 290 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----~~~ig~~~~ig~~~~i~~~ 290 (380)
.++++++|++++.|..++.|++++.|+++|+|+.+. +.++|+++|.|+++|.|+ +++|++++.||+++.+
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~--~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i--- 86 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY--GRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL--- 86 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCC--ccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE---
Confidence 344555555555554445555555555544443321 124666777777666663 4778888888887776
Q ss_pred eEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 291 TVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 291 ~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
.+++||++++||.++.+.++++||+++.|++++.|..+ ..++++.++.|.|++
T Consensus 87 ---~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~-----~~ip~~~~~~G~Pa~ 139 (196)
T PRK13627 87 ---HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAG-----FQGEKRQLLMGTPAR 139 (196)
T ss_pred ---eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCC-----cCcCCCcEEEecCCE
Confidence 67888888888888777776666666665555555322 234445555555554
No 94
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.66 E-value=1.6e-15 Score=145.44 Aligned_cols=128 Identities=26% Similarity=0.409 Sum_probs=79.7
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeee
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENI 290 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~ 290 (380)
.+++.|.+++.|++++.|++++.|. ++.|+++|.|++++.+.+++|+++|.|++++.|. +++|+++|.|++++.+.+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 3344444445555555555555553 5678888888888888889999999999999886 4888888888877766432
Q ss_pred -----------eEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCeeecceeecCccee
Q psy9164 291 -----------TVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHM 345 (380)
Q Consensus 291 -----------~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~ 345 (380)
++.+++.||+++.||.++.+.+ +++||++++||.++.|. ++.+||+++++
T Consensus 350 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~-----~~~~ig~~~~i 417 (451)
T TIGR01173 350 RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLV-----APVKVGDGATI 417 (451)
T ss_pred EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEE-----CCcEECCCCEE
Confidence 2233455666666666555533 34455555555544443 34445554433
No 95
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.65 E-value=9.9e-15 Score=127.69 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+++.|.++ ++++|+|++++ +++++++.+ .+.++.+..+....|++ .+..+...+. .+.|++++||.
T Consensus 29 li~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~~~~~g~~-~~~~a~~~~~--~d~~lv~~~D~ 99 (238)
T PRK13368 29 MIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSDDHLSGTD-RLAEVMLKIE--ADIYINVQGDE 99 (238)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCccCCCccH-HHHHHHHhCC--CCEEEEEcCCc
Confidence 689999999999 89999998864 677888754 35666666666666777 5666766663 46799999995
Q ss_pred --ccCCChHHHHHHHHhcCC-cEEEEEEEcC------CCCceeEEEECCCCceeEEEeCCCC------CCCCeEEEEEEE
Q psy9164 80 --ICDFPFKDLVSFHKNHGK-EGTIVVTQVE------EPSKYGVVLYNEHGCIESFIEKPQE------FVSNKINAGMYI 144 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~-~~tl~~~~~~------~~~~~g~v~~d~~~~v~~~~ek~~~------~~~~~~~~giyi 144 (380)
+...++.++++.|++.+. .++.++.+.+ ++..+++ ..+++|+++.+.|+|.. ....+.++|+|+
T Consensus 100 P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~ 178 (238)
T PRK13368 100 PMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDGESARYLKHVGIYA 178 (238)
T ss_pred CcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCCCCCceeEEEEEEE
Confidence 678889999998876543 4455554433 2444444 44567899999875421 114478999999
Q ss_pred eCHhHHhhccCC-CCC---ccc-chhhhhh-cCCcEEEEEeccEEEecCChhhHHHHHH
Q psy9164 145 FNPSVLDRIEIK-PTS---IEK-EIFPLMS-KEKQLYAMELKGFWMDVGQPRDFLKGMC 197 (380)
Q Consensus 145 ~~~~~l~~l~~~-~~~---~~~-~il~~l~-~~~~i~~~~~~~~~~~i~~~~~~~~a~~ 197 (380)
|++++|..++.. ... ++. +++ .++ ...++.++..+++|.|+++|+||..+..
T Consensus 179 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 179 FRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred eCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 999999887442 111 222 445 444 4446999988899999999999987743
No 96
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.4e-15 Score=135.57 Aligned_cols=130 Identities=24% Similarity=0.407 Sum_probs=99.7
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEe
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRME 288 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~ 288 (380)
.+.++..+.+++.|+.+++||++|.|. ++.|++++.|.+.+.+.++.++++|.||+.+++.. +.+++++.||.+|.+.
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK 354 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVK 354 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEe
Confidence 344555556666666666666666664 68888888888888889999999999999999965 8888888888777764
Q ss_pred -----------eeeEecceEECccceeCcceEE-------ccceEECCCeEECcceEEcCCeeecceeecCccee
Q psy9164 289 -----------NITVLGECIIGWKCVVGQWVRM-------ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHM 345 (380)
Q Consensus 289 -----------~~~~~~~~~ig~~~~ig~~~~i-------~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~ 345 (380)
..+|.+++.||.++.||.++.. +..++||++++||.|+.+ +.+.+||+++.+
T Consensus 355 ~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~L-----VAPV~IGd~a~i 424 (460)
T COG1207 355 KATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQL-----VAPVTIGDGATI 424 (460)
T ss_pred cccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcE-----EeeEEecCCcEE
Confidence 3577899999999999999887 456788888888888776 445555555443
No 97
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.65 E-value=3.6e-15 Score=132.51 Aligned_cols=187 Identities=20% Similarity=0.219 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC--CCCcEEEEe
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK--SQEPFFVLN 76 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~--~~~~~lv~~ 76 (380)
||+|++++|..+ ++++++|++++. .+.+++++.+ ....+.++.++...||++++..+..++.. .++.++|++
T Consensus 35 li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~ 110 (274)
T cd02509 35 LLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLP 110 (274)
T ss_pred HHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEec
Confidence 689999999999 499999999974 4667777754 12345566688899999999999988842 245689999
Q ss_pred CCcccC--CChHHHHHHHHh---cCCcEEEEEEEcCCCCceeEEEECCCC-----ceeEEEeCCCCC--------CCCeE
Q psy9164 77 SDIICD--FPFKDLVSFHKN---HGKEGTIVVTQVEEPSKYGVVLYNEHG-----CIESFIEKPQEF--------VSNKI 138 (380)
Q Consensus 77 gD~i~~--~~l~~~l~~h~~---~~~~~tl~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~--------~~~~~ 138 (380)
||+++. .+|.++++.+.+ .++.+|+...+.++..+||++..+++. +|.+|.|||... ...+.
T Consensus 111 ~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~w 190 (274)
T cd02509 111 SDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLW 190 (274)
T ss_pred chhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEE
Confidence 999776 457777765543 566788888887777899999998653 899999999732 12478
Q ss_pred EEEEEEeCHhHHh-hccC----------------CC---CCcccchhhh----------hhcCCcEEEEEeccEEEecCC
Q psy9164 139 NAGMYIFNPSVLD-RIEI----------------KP---TSIEKEIFPL----------MSKEKQLYAMELKGFWMDVGQ 188 (380)
Q Consensus 139 ~~giyi~~~~~l~-~l~~----------------~~---~~~~~~il~~----------l~~~~~i~~~~~~~~~~~i~~ 188 (380)
++|+|+|+++.+. .++. .. ..+..+.++. |-+..++...+.+..|.|+|+
T Consensus 191 NsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~ 270 (274)
T cd02509 191 NSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGS 270 (274)
T ss_pred ECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccC
Confidence 9999999977652 2211 00 0111122332 223346777888888999998
Q ss_pred hhh
Q psy9164 189 PRD 191 (380)
Q Consensus 189 ~~~ 191 (380)
+.+
T Consensus 271 w~~ 273 (274)
T cd02509 271 WDA 273 (274)
T ss_pred ccc
Confidence 654
No 98
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=120.42 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=97.4
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
...|+++++|.++++|-.++.||+++.|+++++|+ ||. +...||+++.|.++|.|+...- ..+.||
T Consensus 11 ~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlR----gD~---------~~I~IG~~tNIQDg~ViH~~~~-~p~~IG 76 (176)
T COG0663 11 SPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLR----GDV---------EPIRIGARTNIQDGVVIHADPG-YPVTIG 76 (176)
T ss_pred CCCCCCceEECCCCEEEEeEEECCCCEECCceEEE----ccC---------CceEECCCceecCCeEEecCCC-CCeEEC
Confidence 45688899999998888899999999998888886 333 3458999999999999976333 578888
Q ss_pred ccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+++.||.++.+.. +.||+++.||-+++| .++++||++++||+||++|.+. -+|+++++
T Consensus 77 ~~vtIGH~aivHG-c~Ig~~~lIGmgA~v------------------ldga~IG~~~iVgAgalV~~~k---~~p~~~L~ 134 (176)
T COG0663 77 DDVTIGHGAVVHG-CTIGDNVLIGMGATV------------------LDGAVIGDGSIVGAGALVTPGK---EIPGGSLV 134 (176)
T ss_pred CCcEEcCccEEEE-eEECCCcEEecCceE------------------eCCcEECCCcEEccCCcccCCc---CCCCCeEe
Confidence 8888888888765 888888888888888 5667799999999999865543 45666554
No 99
>PLN02472 uncharacterized protein
Probab=99.64 E-value=4e-15 Score=128.07 Aligned_cols=106 Identities=15% Similarity=0.278 Sum_probs=67.4
Q ss_pred ccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-----------CeEEcCCCEECCc
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-----------GCIIGWKCVVGQW 284 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~ig~~~~ig~~ 284 (380)
.++.++++.|++.+..+++|++++.|+++++|..+. ...+||+++.|+++|.|+ +++||++|.||++
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~ 138 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAY 138 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCC
Confidence 344555555555555555444444444444443220 135777788887777773 4677777777777
Q ss_pred eEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 285 VRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 285 ~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
|.| .+|.||+++.||.++.+.++++|++++.||+++.+.
T Consensus 139 s~L------~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 139 SLL------RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred cEE------CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 776 678888888888887777777777777666666653
No 100
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.63 E-value=2.8e-15 Score=125.15 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=90.5
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEEC
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig 299 (380)
...+++++.|++++.|.+++.||++|.|+++|+|+... ..++|++++.|+++|.|+.... .+++++
T Consensus 10 ~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~-------------~~i~Ig~~~~Ig~~~~I~~~~~-~~siIg 75 (196)
T PRK13627 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDY-------------GRLIVQAGANLQDGCIMHGYCD-TDTIVG 75 (196)
T ss_pred CCccCCCeEECCCCEEECceEECCCCEECCCCEEecCC-------------ccEEECCCCEECCCCEEeCCCC-CCCEEC
Confidence 45678888888888877778888888888777775322 1246777777777777754332 368888
Q ss_pred ccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCC--CCCC
Q psy9164 300 WKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSV--PEPQ 377 (380)
Q Consensus 300 ~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~v--p~~~ 377 (380)
+++.||.++.+.. ++||++++||.++.+ ..+++||++++|++||+ |++++ |+++
T Consensus 76 ~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V------------------~~g~~IG~~s~Vgags~-----V~~~~~ip~~~ 131 (196)
T PRK13627 76 ENGHIGHGAILHG-CVIGRDALVGMNSVI------------------MDGAVIGEESIVAAMSF-----VKAGFQGEKRQ 131 (196)
T ss_pred CCCEECCCcEEee-EEECCCCEECcCCcc------------------CCCcEECCCCEEcCCCE-----EeCCcCcCCCc
Confidence 8888888887654 678888888888777 45567999999999999 77766 7777
Q ss_pred cc
Q psy9164 378 II 379 (380)
Q Consensus 378 iv 379 (380)
++
T Consensus 132 ~~ 133 (196)
T PRK13627 132 LL 133 (196)
T ss_pred EE
Confidence 64
No 101
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=1.6e-14 Score=119.84 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAV-SYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+|++|+++|++++++|+ ++..+.++.++.+. .+..++.++..++..+|+.+|+.|++++ +++|++++||+
T Consensus 33 ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~--~~~~~iv~N~~y~ktN~~~Sl~~akd~~---~~~fii~~sD~ 107 (239)
T COG1213 33 IIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYM---DGRFILVMSDH 107 (239)
T ss_pred eHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC--CcceEEEeCCCcccCCceeEEeeehhhh---cCcEEEEeCCE
Confidence 689999999999999999999 89999999999773 3367788888888889999999999999 78899999999
Q ss_pred ccCCCh-HHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164 80 ICDFPF-KDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI- 155 (380)
Q Consensus 80 i~~~~l-~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~- 155 (380)
++...+ +.+++. ... ++.+... .....-.....+++|++..+.++-. .-+..++|++.|+++.+..+.+
T Consensus 108 vye~~~~e~l~~a----~~~-~li~d~~~~~~~~~ea~kv~~e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~ 180 (239)
T COG1213 108 VYEPSILERLLEA----PGE-GLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYEL 180 (239)
T ss_pred eecHHHHHHHHhC----cCC-cEEEeccccccccCceeEEEecCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHH
Confidence 999764 333332 111 2222211 1111111234457889988877644 3466899999999998865522
Q ss_pred ---CCCCcccchhhhhh-cCCcEEEEEeccEEEecCChhhHHHHHHHHHhhh
Q psy9164 156 ---KPTSIEKEIFPLMS-KEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL 203 (380)
Q Consensus 156 ---~~~~~~~~il~~l~-~~~~i~~~~~~~~~~~i~~~~~~~~a~~~~l~~~ 203 (380)
....-..++.+... ............+|.++++|+++.++.+......
T Consensus 181 ~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 181 LVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred HhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 11111111111111 1111111111357999999999999877666544
No 102
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.61 E-value=1.5e-14 Score=138.94 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEee---
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN--- 289 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~--- 289 (380)
++.|.+++.|++++.|+++|.| .+++|+++|.|++++.+.++++++++.|++++.+. ++.||+++.|++++.|.+
T Consensus 282 ~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i 360 (481)
T PRK14358 282 GVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL 360 (481)
T ss_pred CcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence 3333344444444444444444 24567778888888888788888888888888885 588888888888666432
Q ss_pred --------eeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEc
Q psy9164 290 --------ITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVN 329 (380)
Q Consensus 290 --------~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~ 329 (380)
....++++||++|.||.++.+.+ ++.||++++||.++.+.
T Consensus 361 ~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~ 415 (481)
T PRK14358 361 DAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLI 415 (481)
T ss_pred cCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEc
Confidence 23345666677777776666643 23444444444444443
No 103
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.61 E-value=1e-14 Score=139.77 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=80.1
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEe
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRME 288 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~ 288 (380)
.+.+++.|.+++.|++++.|+++|.|. ++.|+++|.|++++.+.+++|++++.|++++.+. ++.+++++.||+++.+.
T Consensus 273 ~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 273 EIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred EEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 445556666667777777777777774 7788888888888888888888899998888885 67888888877776664
Q ss_pred ee-----------eEecceEECccceeCcceEEcc-------ceEECCCeEECcceEE
Q psy9164 289 NI-----------TVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYV 328 (380)
Q Consensus 289 ~~-----------~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i 328 (380)
+. ...+++.||++|.||+++.+.+ .++||++++||.++.+
T Consensus 352 ~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i 409 (456)
T PRK09451 352 KARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQL 409 (456)
T ss_pred ceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEE
Confidence 33 3334566666666666665532 2344444444444443
No 104
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.60 E-value=2.4e-14 Score=113.87 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=64.3
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEec---------CeEEcCCCEE
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLE---------GCIIGWKCVV 281 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~ig~~~~i 281 (380)
.+++.+.++++|++++.|.+.+.+..++.||++|.|++++.|. ++.|+++|.|+.++.+. +++|++++.|
T Consensus 5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~I 84 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFI 84 (139)
T ss_pred CCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEE
Confidence 4455555566666666666666666666666666666666664 56677777777766663 3566666666
Q ss_pred CCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecce
Q psy9164 282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK 337 (380)
Q Consensus 282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~ 337 (380)
++++.| ..++.||+++.|+++ +.|.+++.|+++ ++|+++-+.
T Consensus 85 g~~a~I-----~~gv~Ig~~~~Ig~g------~~V~~~~~I~~~---~~~~~v~~~ 126 (139)
T cd03350 85 GANCEV-----VEGVIVGKGAVLAAG------VVLTQSTPIYDR---ETGEIYYGR 126 (139)
T ss_pred CCCCEE-----CCCCEECCCCEEcCC------CEEcCCeEeccc---CcccEEecc
Confidence 666665 234444444444444 444444444444 555554444
No 105
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.60 E-value=1.4e-14 Score=124.23 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=11.4
Q ss_pred ceeCcceEEccceEECCCeEECcceEEc
Q psy9164 302 CVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 302 ~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
+.||++|.|+.++.|.+++.||++++|+
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIG 201 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVIS 201 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEe
Confidence 3444444444444444444444444443
No 106
>PLN02296 carbonate dehydratase
Probab=99.60 E-value=9.3e-15 Score=127.50 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=68.8
Q ss_pred ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee-----E
Q psy9164 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT-----V 292 (380)
Q Consensus 218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~-----~ 292 (380)
.....+++++.|.+++.+.+++.||++|.|+++|+|.... .++.||+++.|+++|.|+... .
T Consensus 50 ~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~-------------~~I~IG~~~~I~d~~vI~~~~~~~~g~ 116 (269)
T PLN02296 50 DKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV-------------NSISVGSGTNIQDNSLVHVAKTNLSGK 116 (269)
T ss_pred CCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC-------------CceEECCCCEECCCCEEEeCCCcccCC
Confidence 3455677777777777777677777777777777664211 245777888888888775321 1
Q ss_pred ecceEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~ 332 (380)
..+++||+++.||.++.+. +++||++++||.++.|..|+
T Consensus 117 ~~~siIG~~v~IG~~avI~-g~~Igd~v~IG~ga~I~~gv 155 (269)
T PLN02296 117 VLPTIIGDNVTIGHSAVLH-GCTVEDEAFVGMGATLLDGV 155 (269)
T ss_pred CCCcEeCCCCEECCCceec-CCEECCCcEECCCcEECCCe
Confidence 2357888888888888774 47788888888887774443
No 107
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=2.9e-14 Score=136.72 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=61.2
Q ss_pred ECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164 235 IGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI 313 (380)
Q Consensus 235 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~ 313 (380)
|++++.||++|.|+++|.|. +++||++|.|++++.|.+++||++|.|++++.+ .+++|++++.||+++.+..+
T Consensus 265 i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i------~~~~i~~~~~ig~~~~i~~~ 338 (459)
T PRK14355 265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVL------EDSVVGDDVAIGPMAHLRPG 338 (459)
T ss_pred ECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEE------eCCEECCCCEECCCCEECCC
Confidence 33344444444444444443 456788888888888888999999999998888 56777777777777777777
Q ss_pred eEECCCeEECcce
Q psy9164 314 TVLGEDVIVQDEL 326 (380)
Q Consensus 314 ~~ig~~~~ig~~~ 326 (380)
+.|++++.||+++
T Consensus 339 ~~i~~~~~ig~~~ 351 (459)
T PRK14355 339 TELSAHVKIGNFV 351 (459)
T ss_pred CEeCCCCEECCCc
Confidence 7777777777654
No 108
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.57 E-value=5.6e-14 Score=133.78 Aligned_cols=191 Identities=21% Similarity=0.309 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcE-EEEeecCCCCCCchHHHHhHHhhCC--CCCc-EEEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGIS-LVFSHENEPLGTAGPLALAKDILNK--SQEP-FFVL 75 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~-i~~~~~~~~~gt~~al~~a~~~i~~--~~~~-~lv~ 75 (380)
||+|+++.|..+++++++|+++... +.+++.+.+ .+.+ ..+..++...||+.++..+..++.. ..++ ++|+
T Consensus 35 ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl 110 (468)
T TIGR01479 35 MLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVL 110 (468)
T ss_pred HHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCcceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6899999999999999999988533 455555543 2333 2477789999999999887766621 1344 8999
Q ss_pred eCCcccC--CChHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECC------CCceeEEEeCCCCCC--------CC
Q psy9164 76 NSDIICD--FPFKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNE------HGCIESFIEKPQEFV--------SN 136 (380)
Q Consensus 76 ~gD~i~~--~~l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~--------~~ 136 (380)
+||++.. .+|.++++.+ .+.++.+|+...+.+++.+||++..++ .++|..|.|||.... ..
T Consensus 111 ~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~ 190 (468)
T TIGR01479 111 AADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDY 190 (468)
T ss_pred cCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCe
Confidence 9997553 3488887765 344566777777766778999999873 258999999986321 35
Q ss_pred eEEEEEEEeCHhH------------HhhccC-----CC----CCcccchhh---------hhhcC-CcEEEEEeccEEEe
Q psy9164 137 KINAGMYIFNPSV------------LDRIEI-----KP----TSIEKEIFP---------LMSKE-KQLYAMELKGFWMD 185 (380)
Q Consensus 137 ~~~~giyi~~~~~------------l~~l~~-----~~----~~~~~~il~---------~l~~~-~~i~~~~~~~~~~~ 185 (380)
+.|+|+|+|+++. ++.+.. .. ..+..++++ .++++ .+++..+.+..|.|
T Consensus 191 ~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~D 270 (468)
T TIGR01479 191 YWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSD 270 (468)
T ss_pred EEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccc
Confidence 7999999999544 333321 01 112234455 23444 46888888888999
Q ss_pred cCChhhHHHH
Q psy9164 186 VGQPRDFLKG 195 (380)
Q Consensus 186 i~~~~~~~~a 195 (380)
+|+++++.+.
T Consensus 271 vGsw~~l~~~ 280 (468)
T TIGR01479 271 VGSWSALWEI 280 (468)
T ss_pred cCCHHHHHHh
Confidence 9999988654
No 109
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=4.1e-14 Score=135.62 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=56.0
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCceEEeeee-------
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMENIT------- 291 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~~~------- 291 (380)
++.+++++.|++++.|. ++.|+++|+|+ ++.+.+++|++++.|++++.|. +++||++|.|++++.+.+..
T Consensus 280 ~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i 357 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKV 357 (450)
T ss_pred CcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEe
Confidence 33333333333333332 33444555543 2344566677777777777775 47777777777666654322
Q ss_pred ----EecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcC
Q psy9164 292 ----VLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNG 330 (380)
Q Consensus 292 ----~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~ 330 (380)
+.+++.||++|.||+++.+.. +++||++++||.++.|.+
T Consensus 358 ~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~ 407 (450)
T PRK14360 358 NHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVA 407 (450)
T ss_pred ccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeC
Confidence 223445555555555555432 344455555444444443
No 110
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.55 E-value=8.6e-14 Score=112.89 Aligned_cols=102 Identities=21% Similarity=0.410 Sum_probs=80.0
Q ss_pred cccCCCccccceeeCCCCEECCCcEECC---CcEECCCCEEcCCcEE-----eceEEccCCEECCCcEecCeEEcCCCEE
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGP---NVTIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLEGCIIGWKCVV 281 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~ig~~~~i 281 (380)
.+.+.+.+.++++|++++.|++++.|.+ .+.||++|.|+++|.| .+++|++++.|+.++.+.+++||+++.|
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I 87 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALV 87 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEE
Confidence 4556677777888888888888888875 4899999999999999 4699999999999999999999999999
Q ss_pred CCceEEeeeeEecceEECccceeCcceEEccceEE
Q psy9164 282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVL 316 (380)
Q Consensus 282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~i 316 (380)
+.++.|. .++.||+++.|++++.+..++.|
T Consensus 88 g~~~~I~-----~g~~Ig~~~~Ig~~s~v~~~~~i 117 (155)
T cd04745 88 GMNAVVM-----DGAVIGEESIVGAMAFVKAGTVI 117 (155)
T ss_pred CCCCEEe-----CCCEECCCCEECCCCEeCCCCEe
Confidence 9988882 34556666665555444443333
No 111
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.55 E-value=8.2e-14 Score=133.72 Aligned_cols=127 Identities=26% Similarity=0.467 Sum_probs=82.3
Q ss_pred CcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEE
Q psy9164 232 GCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRM 310 (380)
Q Consensus 232 ~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i 310 (380)
++.+++++.|++++.|..++.|. ++.||++|.|+++|.|.+++||++|.|+++|.+ .+++||+++.||+++.+
T Consensus 263 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i------~~~~ig~~~~Ig~~~~i 336 (456)
T PRK14356 263 SVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL------EGAEVGDGCSVGPYARL 336 (456)
T ss_pred cEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE------cccceecccEECCceEE
Confidence 34444555555555555555554 677899999999999999999999999999998 56666666666666666
Q ss_pred ccceEECCCeEECcceE-----EcCCe------eecceeecCcceeec------------ceeEecCceEEeceeee
Q psy9164 311 ENITVLGEDVIVQDELY-----VNGGQ------VLPHKSIGSSLHMLG------------EDVIVQDELYVNGGQVL 364 (380)
Q Consensus 311 ~~~~~ig~~~~ig~~~~-----i~~~~------v~~~~~i~~~~~~~~------------~~v~i~~~~~i~~~~v~ 364 (380)
.++++||+++.||.++. ++.++ .+++..||+++.+.. .+++||+++.+|+++.+
T Consensus 337 ~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i 413 (456)
T PRK14356 337 RPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTAL 413 (456)
T ss_pred CCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEE
Confidence 66666666666665543 33333 233334555433221 23677788888777764
No 112
>PRK10502 putative acyl transferase; Provisional
Probab=99.55 E-value=2.8e-14 Score=118.54 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=61.4
Q ss_pred eCCCCEECCCcEEC--CCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECc
Q psy9164 223 VDPTATIGPGCRIG--PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300 (380)
Q Consensus 223 i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~ 300 (380)
+++++.|++++.|. .+..||++|.|++++.|.+. ..+.||++|.|+++++|....+.
T Consensus 54 iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~--------------~~v~IG~~~~I~~~~~I~~~~h~------- 112 (182)
T PRK10502 54 IGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNL--------------GEITIGAHCVISQKSYLCTGSHD------- 112 (182)
T ss_pred cCCCcEEcCCEEEecCCeEEECCCeEECCCceeccc--------------CceEECCCcEECCCeEEECCCCC-------
Confidence 33344444444332 13455555555555555310 13456666666666666321110
Q ss_pred cceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 301 KCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 301 ~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
..-.....+...++||++++||+++.| .++++||++++||++++ |++|+|+++++
T Consensus 113 -~~~~~~~~~~~~i~Igd~~~Ig~~a~I------------------~~Gv~Ig~~~vIga~sv-----V~~~v~~~~v~ 167 (182)
T PRK10502 113 -YSDPHFDLNTAPIVIGEGCWLAADVFV------------------APGVTIGSGAVVGARSS-----VFKSLPANTIC 167 (182)
T ss_pred -CcCCCcccccCCEEEcCCcEEcCCCEE------------------cCCCEECCCCEECCCCE-----EecccCCCcEE
Confidence 000011112334667777777777776 45667888888888888 88888888765
No 113
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.54 E-value=1.3e-13 Score=112.42 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=33.6
Q ss_pred CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
++.||+++.|++++.+ .++.+++++.||+++.++.+++|+++++|++++.+.
T Consensus 72 ~v~Ig~~~~Ig~~~~i------~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~ 123 (161)
T cd03359 72 PLHIGDYVFIGENCVV------NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVP 123 (161)
T ss_pred CeEECCccEECCCCEE------EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEEC
Confidence 3567777777777777 456666666666666666666666666666665553
No 114
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.54 E-value=1e-13 Score=132.70 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=53.2
Q ss_pred EEcCCcEE-----eceEEccCCEECCCcEec-CeEEcCCCEECCceEEee-----------eeEecceEECccceeCcce
Q psy9164 246 VIEGGVCI-----KRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWVRMEN-----------ITVLGECIIGWKCVVGQWV 308 (380)
Q Consensus 246 ~i~~~~~i-----~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~~i~~-----------~~~~~~~~ig~~~~ig~~~ 308 (380)
.|+++|.| .+++|++++.|++++++. ++.||+++.|++++.+.+ .++.+++.||+++.||+++
T Consensus 292 ~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~ 371 (448)
T PRK14357 292 EIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGT 371 (448)
T ss_pred EECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCc
Confidence 44555544 467788888888888774 477787777777765532 2223455666666666666
Q ss_pred EEc-------cceEECCCeEECcceEEcCCe
Q psy9164 309 RME-------NITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 309 ~i~-------~~~~ig~~~~ig~~~~i~~~~ 332 (380)
.+. .+++||++++||.++.|.+++
T Consensus 372 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv 402 (448)
T PRK14357 372 ITCNYDGKKKNPTFIEDGAFIGSNSSLVAPV 402 (448)
T ss_pred ccccccccccCCcEECCCCEECCCCEEeCCc
Confidence 543 235566666666665554443
No 115
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.53 E-value=5.5e-14 Score=116.18 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=45.5
Q ss_pred EEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEec
Q psy9164 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQ 353 (380)
Q Consensus 274 ~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~ 353 (380)
.||++|.|+++|.|....+. .+......+..+...+.||+++|||.++.| .++++||
T Consensus 95 ~IGd~v~I~~~v~i~t~~h~-----~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I------------------~~gv~IG 151 (183)
T PRK10092 95 RIGDNCMLAPGVHIYTATHP-----LDPVARNSGAELGKPVTIGNNVWIGGRAVI------------------NPGVTIG 151 (183)
T ss_pred EECCCCEECCCCEEEcCCCC-----CChHHccccceecCCeEECCCcEECCCCEE------------------CCCCEEC
Confidence 66777777777777432111 111111122233344566666666666666 4556677
Q ss_pred CceEEeceeeeccccccCCCCCCCcc
Q psy9164 354 DELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 354 ~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++++||++++ |++|+|+++++
T Consensus 152 ~~~vIgagsv-----V~~di~~~~i~ 172 (183)
T PRK10092 152 DNVVVASGAV-----VTKDVPDNVVV 172 (183)
T ss_pred CCCEECCCCE-----EccccCCCcEE
Confidence 8888888887 77777777765
No 116
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.53 E-value=1.9e-13 Score=131.28 Aligned_cols=130 Identities=22% Similarity=0.353 Sum_probs=82.6
Q ss_pred EECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEcc
Q psy9164 234 RIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN 312 (380)
Q Consensus 234 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~ 312 (380)
.|++++.||++|.|++++.|. ++.||++|.|++++.|.+++||++|.|++ +.+ .++.||+++.||+++.+..
T Consensus 261 ~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i------~~~~ig~~~~Ig~~~~i~~ 333 (458)
T PRK14354 261 YIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVI------EESKVGDNVTVGPFAHLRP 333 (458)
T ss_pred EECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEE------eCCEECCCcEECCceEecC
Confidence 445555555566666666654 56778888888888888888888888884 455 3566666666666666665
Q ss_pred ceEECCCeEECcceEE-----------cCCeeecceeecCcceeec------------ceeEecCceEEeceeee-cccc
Q psy9164 313 ITVLGEDVIVQDELYV-----------NGGQVLPHKSIGSSLHMLG------------EDVIVQDELYVNGGQVL-PHKS 368 (380)
Q Consensus 313 ~~~ig~~~~ig~~~~i-----------~~~~v~~~~~i~~~~~~~~------------~~v~i~~~~~i~~~~v~-p~~~ 368 (380)
+++||+++.||+++.| +..+.+.+..||+++.+.. -+++|++++.+|+++.+ |...
T Consensus 334 ~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ 413 (458)
T PRK14354 334 GSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVT 413 (458)
T ss_pred CCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcE
Confidence 6666666666554443 3333344445555543321 15778899999888864 4433
Q ss_pred cc
Q psy9164 369 IG 370 (380)
Q Consensus 369 v~ 370 (380)
+.
T Consensus 414 ig 415 (458)
T PRK14354 414 VG 415 (458)
T ss_pred EC
Confidence 33
No 117
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.52 E-value=1.7e-13 Score=116.11 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=19.3
Q ss_pred eeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
+++|+++++|+++++ |.+++|+++++
T Consensus 168 ~~~ig~~~~v~~~~~-----v~~~~~~~~~~ 193 (197)
T cd03360 168 GVTIGAGAIIGAGAV-----VTKDVPDGSVV 193 (197)
T ss_pred CCEECCCCEECCCCE-----EcCCCCCCCEE
Confidence 345777777888888 77888887765
No 118
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.51 E-value=3.1e-13 Score=130.31 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=64.8
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec-CeEEcCCCEECCce-------
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVGQWV------- 285 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~ig~~~~ig~~~------- 285 (380)
++.|.++++|++++.|++++.|. +++||++|.|++ +.+.+++|++++.||+++.+. +++||+++.+|.++
T Consensus 283 ~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I 360 (482)
T PRK14352 283 GTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATI 360 (482)
T ss_pred CcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEE
Confidence 33333444444444444444442 344455555542 344567777777777777774 56676666655443
Q ss_pred ----EEeeeeEecceEECccceeCcceEEcc-------ceEECCCeEECcceEEcCCe
Q psy9164 286 ----RMENITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 286 ----~i~~~~~~~~~~ig~~~~ig~~~~i~~-------~~~ig~~~~ig~~~~i~~~~ 332 (380)
.+....+.+++.||++|.||.++.+.+ +++||++++||.++.|.++.
T Consensus 361 ~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~ 418 (482)
T PRK14352 361 GRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPV 418 (482)
T ss_pred CCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCC
Confidence 333333345667777777777766642 35566666666665554443
No 119
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.51 E-value=2.1e-13 Score=105.69 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccc
Q psy9164 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKC 302 (380)
Q Consensus 224 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~ 302 (380)
++++.|++++.|++++.||++|.|++++.|. +++|+++|.|++++.+.+..+.... +...+.+ .++.+|+++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~------~~~~Ig~~~ 74 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWEL------KGTTVKRGA 74 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-ccccccc------CCcEECCCc
Confidence 4566666666666667777777777777774 6777777777777766554443322 3333444 677778888
Q ss_pred eeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 303 VVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 303 ~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
+||+++.+.+++.|++++.|++++.+ .+ .++++..+.|.|++
T Consensus 75 ~Ig~~~~v~~~~~ig~~~~i~~~~~v------~~-~i~~~~~~~G~pa~ 116 (119)
T cd03358 75 SIGANATILPGVTIGEYALVGAGAVV------TK-DVPPYALVVGNPAR 116 (119)
T ss_pred EECcCCEEeCCcEECCCCEEccCCEE------eC-cCCCCeEEecCcce
Confidence 88877776666666666665555554 33 25555555555543
No 120
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=130.12 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcccee
Q psy9164 225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVV 304 (380)
Q Consensus 225 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~i 304 (380)
++..+.+++.|.+.+.||++|.|+++|.|++++|+++|.|++ +.+.+++||+++.|++++.|.+..+..++.++... +
T Consensus 252 ~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~ 329 (430)
T PRK14359 252 ETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-L 329 (430)
T ss_pred CeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-e
Confidence 455667777777788888888888888888899999999976 77788899999999888888433333333222211 1
Q ss_pred CcceEEccceEECCCeEECcceEEcCCe
Q psy9164 305 GQWVRMENITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 305 g~~~~i~~~~~ig~~~~ig~~~~i~~~~ 332 (380)
+++.+++.+.|+ +++||+++.|++++
T Consensus 330 -~~~~i~~~~~i~-d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 330 -NGVKAGHLSYLG-DCEIDEGTNIGAGT 355 (430)
T ss_pred -cccccccccccc-CCEECCCCEECCCc
Confidence 233333333332 24444455554444
No 121
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.51 E-value=9.1e-14 Score=116.24 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=28.1
Q ss_pred ceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 313 ITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 313 ~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.++||+++|||.+++| .++++||++++||+||+ |++|+|+++++
T Consensus 131 pi~IGd~v~IG~~~~I------------------~~gv~IG~~~vIgagsv-----V~kdvp~~~v~ 174 (203)
T PRK09527 131 PITIGNNVWIGSHVVI------------------NPGVTIGDNSVIGAGSV-----VTKDIPPNVVA 174 (203)
T ss_pred CeEECCCcEECCCCEE------------------cCCCEECCCCEECCCCE-----EcccCCCCcEE
Confidence 3556666666666555 45556777777777777 66777776654
No 122
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.51 E-value=4.1e-13 Score=108.46 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=82.6
Q ss_pred ccccCCCccccceeeCCCCEECCCcEECCC---cEECCCCEEcCCcEEec-----eEEccCCEECCCcEecCeEEcCCCE
Q psy9164 209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPN---VTIGPGVVIEGGVCIKR-----STILRDAIVKSHSWLEGCIIGWKCV 280 (380)
Q Consensus 209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~ig~~~~ 280 (380)
..+.+.+.+.+++.+++++.|++++.|.+. ++||++|.|+++|.|.. ++|++++.|++++.+.+++|++++.
T Consensus 7 ~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ 86 (154)
T cd04650 7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVI 86 (154)
T ss_pred eEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCE
Confidence 345666777788888888888888888755 69999999999999974 8999999999999999999999999
Q ss_pred ECCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED 319 (380)
Q Consensus 281 ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~ 319 (380)
|+.++.+ ..++.+|++++++.++.+.++..++++
T Consensus 87 Ig~~~~i-----~~~~~Ig~~~~vg~~~~v~~g~~i~~~ 120 (154)
T cd04650 87 VGMGAIL-----LNGAKIGDHVIIGAGAVVTPGKEIPDY 120 (154)
T ss_pred EcCCCEE-----eCCCEECCCCEECCCCEECCCcEeCCC
Confidence 9999888 345666666666666555444444333
No 123
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.50 E-value=2.6e-13 Score=115.55 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=15.4
Q ss_pred eEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 350 VIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 350 v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++|+++++|+++++ +.+++|+++++
T Consensus 172 ~~i~~~~~i~~~~~-----v~~~~~~~~~~ 196 (201)
T TIGR03570 172 VTIGAGAIVGAGAV-----VTKDIPDGGVV 196 (201)
T ss_pred CEECCCCEECCCCE-----ECCcCCCCCEE
Confidence 34566666666666 66666666554
No 124
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.50 E-value=5.1e-13 Score=109.66 Aligned_cols=113 Identities=21% Similarity=0.383 Sum_probs=87.6
Q ss_pred cccCCCccccceeeCCCCEECCCcEECC----CcEECCCCEEcCCcEEe-----ceEEccCCEECCCcEecC-eEEcCCC
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGP----NVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHSWLEG-CIIGWKC 279 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~ig~~~ 279 (380)
.+.+++.+.+++.+++++.|++++.|+. ++.||++|.|++++.+. ++.||+++.|+.++.+.. +.||++|
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~ 89 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC 89 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence 4556666667777777777777777764 36889999999999884 678999999999999976 9999999
Q ss_pred EECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 280 ~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
.||.++.| .++.||+++.||.++.+. ++.|+++..+++++++.
T Consensus 90 ~Ig~~~~I------~~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 90 FIGFRSVV------FNAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVIT 132 (167)
T ss_pred EECCCCEE------ECCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEc
Confidence 99999998 467888888888887774 35666666666555554
No 125
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.50 E-value=1.4e-13 Score=106.77 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCEEcCCcEEe-ceEEccCCEECCCcEe-cCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164 244 GVVIEGGVCIK-RSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI 321 (380)
Q Consensus 244 ~~~i~~~~~i~-~~~i~~~~~i~~~~~i-~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 321 (380)
+|.|++++.|. ++.|+++|.|++++.+ .++.||++|.|++++.+.+. .+.. ..+...+.+. +++|+++++
T Consensus 4 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~------~~~~-~~~~~~~~~~-~~~Ig~~~~ 75 (119)
T cd03358 4 NCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTND------LYPR-SKIYRKWELK-GTTVKRGAS 75 (119)
T ss_pred CCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecC------CCCc-cccccccccC-CcEECCCcE
Confidence 33333333333 3444555566655555 35677777777777777332 1111 1222233333 367777777
Q ss_pred ECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 322 VQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 322 ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
||+++.+ ..+++|++++.|+++++ +++++|+++++
T Consensus 76 Ig~~~~v------------------~~~~~ig~~~~i~~~~~-----v~~~i~~~~~~ 110 (119)
T cd03358 76 IGANATI------------------LPGVTIGEYALVGAGAV-----VTKDVPPYALV 110 (119)
T ss_pred ECcCCEE------------------eCCcEECCCCEEccCCE-----EeCcCCCCeEE
Confidence 7777777 44556889999999999 88899998876
No 126
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.49 E-value=3.5e-13 Score=112.18 Aligned_cols=105 Identities=16% Similarity=0.328 Sum_probs=80.4
Q ss_pred cccCCCccccceeeCCCCEECCCcEECC---CcEECCCCEEcCCcEE-----eceEEccCCEECCCcEecCeEEcCCCEE
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGP---NVTIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLEGCIIGWKCVV 281 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~ig~~~~i 281 (380)
.+.+++.+.++++|++++.|++++.|.+ .++||++|.|+++|.| .+++|++++.|++++.|++|+|++++.|
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~I 95 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALV 95 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEE
Confidence 4566677777788888888888888753 4788999999999999 3799999999999999999999999999
Q ss_pred CCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164 282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED 319 (380)
Q Consensus 282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~ 319 (380)
|.++.+. .++.||+++.+++++.+.++..+.++
T Consensus 96 G~ga~I~-----~g~~IG~~s~Vgags~V~~~~~ip~~ 128 (192)
T TIGR02287 96 GMNAVVM-----DGAVIGENSIVAASAFVKAGAEMPAQ 128 (192)
T ss_pred CCCcccC-----CCeEECCCCEEcCCCEECCCCEECCC
Confidence 9998883 34556666666655444444443333
No 127
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.49 E-value=4.8e-13 Score=116.09 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=7.6
Q ss_pred cccceeeCCCCEECCCcEE
Q psy9164 217 IVGNVLVDPTATIGPGCRI 235 (380)
Q Consensus 217 i~~~~~i~~~~~i~~~~~i 235 (380)
+.+++++++++.|++++.|
T Consensus 106 I~p~a~V~~ga~Ig~gavI 124 (272)
T PRK11830 106 VVPGAVVRRGAYIAPNVVL 124 (272)
T ss_pred EcCCeEECCCCEECCCcEE
Confidence 3334444444444444333
No 128
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.49 E-value=8.7e-13 Score=102.21 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=62.3
Q ss_pred ccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecc--
Q psy9164 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE-- 295 (380)
Q Consensus 218 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~-- 295 (380)
.+.+.+.+++.||+++.|.+++++..++.|++++.|.. .++. ++.|+++|.||+++.|. ....++
T Consensus 5 ~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~-----------~a~Ighd~~IG~~~~I~-~~l~G~~~ 71 (147)
T cd04649 5 ADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISS-----------GVIVGKGSDVGGGASIM-GTLSGGGN 71 (147)
T ss_pred cCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccC-----------CEEECCCCEECCCCEEE-EECCCCcc
Confidence 34444555555555555555555555555555544421 1222 34555666666666664 222344
Q ss_pred --eEECccceeCcceEEccceEECCCeEECcceEEcCCeeeccee
Q psy9164 296 --CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKS 338 (380)
Q Consensus 296 --~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~ 338 (380)
+.||++++||.++.| ++.||+++.||+++.+..++.+.+..
T Consensus 72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~~~ 114 (147)
T cd04649 72 NVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTLPD 114 (147)
T ss_pred cCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEEEcc
Confidence 788888888888888 57777777777777776666555443
No 129
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=6.5e-13 Score=94.92 Aligned_cols=65 Identities=48% Similarity=1.046 Sum_probs=60.1
Q ss_pred eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i 287 (380)
+++++.|++++.|+++++|+++|.|++++.|.++++++++.|++++++.++++++++.+++++.+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~ 66 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRL 66 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEE
Confidence 57888999999999999999999999999999999999999999999999999999999998888
No 130
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.47 E-value=1e-12 Score=106.49 Aligned_cols=104 Identities=19% Similarity=0.327 Sum_probs=78.8
Q ss_pred ccccCCCccccceeeCCCCEECCCcEECCC---cEECCCCEEcCCcEEec-----eEEccCCEECCCcEecCeEEcCCCE
Q psy9164 209 KLLKEGDGIVGNVLVDPTATIGPGCRIGPN---VTIGPGVVIEGGVCIKR-----STILRDAIVKSHSWLEGCIIGWKCV 280 (380)
Q Consensus 209 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~ig~~~~ 280 (380)
..+.+++.+.+++++++++.|++++.|.++ ++||++|.|++++.|.. ++|++++.|+.++.+.++.|++++.
T Consensus 6 ~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ 85 (153)
T cd04645 6 AFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCL 85 (153)
T ss_pred eEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCE
Confidence 455667777778888888888888888643 58999999999998875 5899999999999998899999999
Q ss_pred ECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG 317 (380)
Q Consensus 281 ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig 317 (380)
|++++.+. +++.++++++++.++.+..++.++
T Consensus 86 Ig~~~~v~-----~~~~ig~~~~ig~~~~v~~~~~i~ 117 (153)
T cd04645 86 IGMGAIIL-----DGAVIGKGSIVAAGSLVPPGKVIP 117 (153)
T ss_pred ECCCCEEc-----CCCEECCCCEECCCCEECCCCEeC
Confidence 99888882 355566666666554444433333
No 131
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.46 E-value=6.8e-13 Score=113.95 Aligned_cols=105 Identities=20% Similarity=0.255 Sum_probs=70.0
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEe
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME 288 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~ 288 (380)
.+.+++.+.++++|++++.|++++.|+++++||++|.|++++.|. +++||++|.|+.++.+.+. + +++.
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~-~------~~~~--- 157 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGV-I------EPPS--- 157 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccc-c------cccc---
Confidence 455666677777888888888888887788888888888888885 7788888888877766541 1 1111
Q ss_pred eeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 289 NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 289 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..++.||++++||.++.+.+++.||++++|++++.|
T Consensus 158 ----~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV 193 (231)
T TIGR03532 158 ----AKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIV 193 (231)
T ss_pred ----CCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 134556677777766665555555555555555544
No 132
>KOG1461|consensus
Probab=99.46 E-value=1.8e-13 Score=127.29 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=81.5
Q ss_pred ccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeee
Q psy9164 211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENI 290 (380)
Q Consensus 211 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~ 290 (380)
+..++.+..++.||.++.||.++.|. |++||+||.||.+++|.++.||++|+||+||+|.+|+|++++.|+++|.+.
T Consensus 324 ~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~-- 400 (673)
T KOG1461|consen 324 LSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILK-- 400 (673)
T ss_pred ehhhccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccC--
Confidence 34467788899999999999999995 999999999999999999999999999999999999999999999999993
Q ss_pred eEecceEECccceeCcceEEccc
Q psy9164 291 TVLGECIIGWKCVVGQWVRMENI 313 (380)
Q Consensus 291 ~~~~~~~ig~~~~ig~~~~i~~~ 313 (380)
.++++|.++.+|++-.+..+
T Consensus 401 ---~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 401 ---PGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---CCcEEeeeeEeCCCcccccc
Confidence 35666666555555444444
No 133
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.45 E-value=5.2e-13 Score=109.82 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=48.1
Q ss_pred eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV 352 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i 352 (380)
..||+++.|+++|.|.+..+. + ++.....+......+.||+++|||++++| .++++|
T Consensus 83 i~IG~~v~Ig~~~~I~~~~h~----~-~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I------------------~~gv~I 139 (169)
T cd03357 83 VTIGDNVLIGPNVQIYTAGHP----L-DPEERNRGLEYAKPITIGDNVWIGGGVII------------------LPGVTI 139 (169)
T ss_pred EEECCCCEECCCCEEEeCCCC----C-ChhHccccceecCCcEeCCCEEECCCCEE------------------eCCCEE
Confidence 466666666666666432110 0 00000122233445667777777777766 566778
Q ss_pred cCceEEeceeeeccccccCCCCCCCcc
Q psy9164 353 QDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 353 ~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
|++++||++++ |++|+|+++++
T Consensus 140 g~~~~Vgagav-----V~~~vp~~~vv 161 (169)
T cd03357 140 GDNSVIGAGSV-----VTKDIPANVVA 161 (169)
T ss_pred CCCCEECCCCE-----EccccCCCcEE
Confidence 89999999998 88888888876
No 134
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.45 E-value=5.8e-13 Score=111.66 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred EECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEec---CeEEcCCCEECCceEEeeeeEec--ceEECccceeC--c
Q psy9164 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE---GCIIGWKCVVGQWVRMENITVLG--ECIIGWKCVVG--Q 306 (380)
Q Consensus 234 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---~~~ig~~~~ig~~~~i~~~~~~~--~~~ig~~~~ig--~ 306 (380)
.+++++.++.+|++... ......||+++.|++++.+. ++.||++|.|++++.|.+..+.. ....-.+..+. .
T Consensus 45 ~iG~~v~i~~~~ri~~~-~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~ 123 (192)
T PRK09677 45 NFGEGFTSGVGLRLDAF-GRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDM 123 (192)
T ss_pred EECCceEECCCeEEEec-CCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhh
Confidence 44444444444444211 01245677777777777774 57888888888888885422200 00000000000 0
Q ss_pred ceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 307 WVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 307 ~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.-.-...+.||++++||+++.| .++++||++++||++++ |++++|+++++
T Consensus 124 ~~~~~~~v~Ig~~~~ig~~~~i------------------~~g~~Ig~~~~Iga~s~-----v~~~i~~~~~~ 173 (192)
T PRK09677 124 RTLESSAVVIGQRVWIGENVTI------------------LPGVSIGNGCIVGANSV-----VTKSIPENTVI 173 (192)
T ss_pred cccccCCeEEcCCcEECCCCEE------------------cCCCEECCCCEECCCCE-----ECcccCCCcEE
Confidence 0001123555666665555555 34455666666666666 66666666654
No 135
>PLN02472 uncharacterized protein
Probab=99.45 E-value=1.6e-12 Score=112.09 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=73.0
Q ss_pred eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee-----Eecce
Q psy9164 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT-----VLGEC 296 (380)
Q Consensus 222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~-----~~~~~ 296 (380)
.+++++.|.+++.+.+++.||++|.|+++++|. |+... ..||+++.|+++|.|+... ...++
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavir----gd~~~---------I~IG~~t~Ig~~~vI~~~~~~~~~i~~~t 127 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLR----GDLNK---------ITVGFCSNVQERCVLHAAWNSPTGLPAET 127 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEe----cCCcc---------eEECCCCEECCCCEEeecCccccCCCCCc
Confidence 456666666666666666666666666665442 32221 2667777777777775432 12467
Q ss_pred EECccceeCcceEEccceEECCCeEECcceEEcCCeeecce-eecCcceeecceeEecCceEEe
Q psy9164 297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK-SIGSSLHMLGEDVIVQDELYVN 359 (380)
Q Consensus 297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~-~i~~~~~~~~~~v~i~~~~~i~ 359 (380)
.||+++.||.++.+. +++|+++++||.+++|..++++++. .|+.++ ++.++..|+++.+..
T Consensus 128 vIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gs-vV~~g~~Ip~g~~~~ 189 (246)
T PLN02472 128 LIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLVETHSILEAGS-VLPPGRRIPTGELWA 189 (246)
T ss_pred EECCCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEECCCCEECCCC-EECCCCEeCCCCEEE
Confidence 777777777777774 4777777777777777776665553 233332 333344455554444
No 136
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.43 E-value=3e-12 Score=104.45 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=16.6
Q ss_pred eEECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~ 332 (380)
+.||++++|++++.+.. +.|++++.||++++|+.++
T Consensus 73 v~Ig~~~~Ig~~~~i~~-~~Ig~~v~Ig~~~~Ig~~~ 108 (161)
T cd03359 73 LHIGDYVFIGENCVVNA-AQIGSYVHIGKNCVIGRRC 108 (161)
T ss_pred eEECCccEECCCCEEEe-eEEcCCcEECCCCEEcCCC
Confidence 34445555555544433 3444444444444444433
No 137
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.42 E-value=5.5e-12 Score=107.33 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=31.9
Q ss_pred CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
++.||+++.+++++.+ .+++.+|+++++|.++.+.+++.|+++++||+++++
T Consensus 135 ~~~ig~~~~i~~~~~i-----~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 135 DCVIGDYVHIAPGVTL-----SGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVV 186 (201)
T ss_pred CCEECCCCEECCCCEE-----eCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 3556666666666666 235666777777777666665666666555555554
No 138
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.42 E-value=1.7e-12 Score=93.00 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=60.4
Q ss_pred eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccc
Q psy9164 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKC 302 (380)
Q Consensus 223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~ 302 (380)
|++++.|++++.|. ++.|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++.+ .++++|+++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v------~~~ii~~~~ 74 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL------KDCLVGSGY 74 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEE------ccCEECCCc
Confidence 56677777777775 68888888888888888888888888888888888888888888888887 455555555
Q ss_pred eeCcc
Q psy9164 303 VVGQW 307 (380)
Q Consensus 303 ~ig~~ 307 (380)
.|+++
T Consensus 75 ~i~~~ 79 (81)
T cd04652 75 RVEAG 79 (81)
T ss_pred EeCCC
Confidence 55443
No 139
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.42 E-value=5.6e-12 Score=106.77 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=31.4
Q ss_pred eEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
+.||+++.|++++.+ .+++.||++++||.++.+.++++||++++||+++.|
T Consensus 133 ~~ig~~~~i~~~~~i-----~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 133 CVIGDFVHIAPGVVL-----SGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCCEECCCCEE-----cCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 456666666666665 235666777777777666666666666655555554
No 140
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.42 E-value=2.3e-12 Score=99.88 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=8.6
Q ss_pred eEecCceEEeceee
Q psy9164 350 VIVQDELYVNGGQV 363 (380)
Q Consensus 350 v~i~~~~~i~~~~v 363 (380)
+.||++++||+|++
T Consensus 90 v~IG~~~vIGaGsv 103 (147)
T cd04649 90 ISLGDNCIVEAGLY 103 (147)
T ss_pred EEECCCCEECCCCE
Confidence 34666666666666
No 141
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.41 E-value=1.4e-12 Score=93.07 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=29.7
Q ss_pred eCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 223 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i 287 (380)
|+++++|++++.|. ++.|+++|.|++++.|.++.+++++.|++++++.+++|++++.|++++.+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 65 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTI 65 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEE
Confidence 34444444444443 34455555555555554444444444444444444444444444443333
No 142
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.41 E-value=6.7e-13 Score=115.24 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=25.4
Q ss_pred eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV 352 (380)
Q Consensus 296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i 352 (380)
..||++++||.++.|..++.||++++||++++| .+ .+++++++.|.|.++
T Consensus 194 p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV------~~-dVp~~~~v~G~PArv 243 (273)
T PRK11132 194 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV------LQ-PVPPHTTAAGVPARI 243 (273)
T ss_pred CEECCCcEEcCCCEEcCCCEECCCCEECCCCEE------Cc-ccCCCcEEEecCcEE
Confidence 445555555555444444444444444444333 33 366666666665553
No 143
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=2.2e-12 Score=92.06 Aligned_cols=65 Identities=31% Similarity=0.475 Sum_probs=45.4
Q ss_pred eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEE
Q psy9164 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i 287 (380)
+|++++.|++++.|.+ +.||++|.|++++.+.+++|++++.|++++++.++++++++.|++++.+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i 65 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRV 65 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEE
Confidence 3566667777777764 7777777777777777777777777777777777777776666666666
No 144
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=2.7e-12 Score=91.56 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=66.9
Q ss_pred EECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCC
Q psy9164 240 TIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED 319 (380)
Q Consensus 240 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~ 319 (380)
+||++|.|++++.+.+++|+++|.|++++.+.+++|++++.|++++.+ .++++++++.|++++.+.++++++++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i------~~svv~~~~~i~~~~~i~~~~~ig~~ 74 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVI------VDSIIGDNAVIGENVRVVNLCIIGDD 74 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEE------ECCEECCCCEECCCCEEcCCeEECCC
Confidence 367788888888888888999999999999999999999999999999 57788888888888888777777777
Q ss_pred eEEC
Q psy9164 320 VIVQ 323 (380)
Q Consensus 320 ~~ig 323 (380)
+.|+
T Consensus 75 ~~i~ 78 (79)
T cd03356 75 VVVE 78 (79)
T ss_pred eEEC
Confidence 7765
No 145
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.38 E-value=6.4e-12 Score=105.98 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=73.0
Q ss_pred cccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCe-EEcCCCEECCceEEe
Q psy9164 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGC-IIGWKCVVGQWVRME 288 (380)
Q Consensus 210 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~~~ig~~~~i~ 288 (380)
.+++++.+. ++.|++++.|++++.|. ++.||++|.|++++.+.++.||++|.|++++.+... ...++....+.+...
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~ 87 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRA 87 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccc
Confidence 455666664 46788888888888885 889999999999999999999999999988877431 111111111111100
Q ss_pred --------------eeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 289 --------------NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 289 --------------~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
......++.||++++||.++.|..++.||+++.||+++.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v 141 (204)
T TIGR03308 88 AMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVV 141 (204)
T ss_pred ccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 0001245666666666666555555555555554444444
No 146
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.37 E-value=1.5e-11 Score=106.54 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=47.4
Q ss_pred CeEEcCCCEECCceEEeeeeEecc----eEECccceeCcceEEccceEECCCeEECcceEEcCCeeec
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGE----CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~----~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~ 335 (380)
+++||++|.||.+|.| ..+..++ +.||++|+||.++.+ +..||++++||++++|.+++.+.
T Consensus 224 GavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred CCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence 3566666666666666 3344566 889999999999998 78999999999999998887543
No 147
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.36 E-value=4.6e-12 Score=95.85 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=34.6
Q ss_pred ccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 311 ENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 311 ~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
...+.||++++||.++.| .++++|+++++|+++++ |++|+|+++++
T Consensus 54 ~~~v~Ig~~~~ig~~~~i------------------~~g~~Ig~~~~i~~gs~-----v~~~~~~~~~~ 99 (107)
T cd05825 54 TAPIVIGDGAWVAAEAFV------------------GPGVTIGEGAVVGARSV-----VVRDLPAWTVY 99 (107)
T ss_pred cCCEEECCCCEECCCCEE------------------CCCCEECCCCEECCCCE-----EeCcCCCCCEE
Confidence 445667777777777776 55667888888888888 88888888765
No 148
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.36 E-value=6e-12 Score=90.11 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=61.3
Q ss_pred ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320 (380)
Q Consensus 241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~ 320 (380)
||+++.|++++.+.++.|++++.|++++.|.++++++++.|++++.+ .++++++++.|++++.+.+ +++++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l------~~svi~~~~~i~~~~~v~~-~ii~~~~ 74 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTL------ENCIIGNGAVIGEKCKLKD-CLVGSGY 74 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEE------eccEEeCCCEECCCCEEcc-CEECCCc
Confidence 67778888888888888999999999999999999999999999988 5677777777777777643 5555555
Q ss_pred EECcc
Q psy9164 321 IVQDE 325 (380)
Q Consensus 321 ~ig~~ 325 (380)
.|+++
T Consensus 75 ~i~~~ 79 (81)
T cd04652 75 RVEAG 79 (81)
T ss_pred EeCCC
Confidence 54443
No 149
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.36 E-value=4.8e-12 Score=106.70 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=40.7
Q ss_pred cceEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164 312 NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 312 ~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
..++||++||||++++| .++|+||+|++||++|| |+||+|+++|+.
T Consensus 123 ~~v~IG~~vwIG~~a~I------------------lpGV~IG~gavigagsV-----Vtkdvp~~~iv~ 168 (190)
T COG0110 123 GPVTIGEDVWIGAGAVI------------------LPGVTIGEGAVIGAGSV-----VTKDVPPYGIVA 168 (190)
T ss_pred CCeEECCCeEEcCccEE------------------CCCEEECCCcEEeeCCE-----EeCccCCCeEEe
Confidence 34888999999999888 67788999999999999 999999998863
No 150
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.35 E-value=1.2e-11 Score=92.94 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=53.8
Q ss_pred CEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCc
Q psy9164 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQ 306 (380)
Q Consensus 227 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~ 306 (380)
++|++++.|. +++||++|.|+ ++.|.++++++++.|+++++|.++++++++.|++++.+ .++++|+++.|++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i------~~siig~~~~Ig~ 73 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI------RRAIIDKNVVIPD 73 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE------EeEEECCCCEECC
Confidence 4566666663 67788888887 77888888888888888888888888888888877777 3444454444444
Q ss_pred ceEEc
Q psy9164 307 WVRME 311 (380)
Q Consensus 307 ~~~i~ 311 (380)
++.+.
T Consensus 74 ~~~v~ 78 (104)
T cd04651 74 GVVIG 78 (104)
T ss_pred CCEEC
Confidence 44443
No 151
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.35 E-value=9e-12 Score=88.89 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320 (380)
Q Consensus 241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~ 320 (380)
||++|.|++++.|.++++++++.|+++++|.++.+++++.|++++++ .++.+++++.|++++.+..++++++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i------~~~~i~~~~~i~~~~~i~~~~~v~~~~ 75 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTI------HHSIVADGAVIGKGCTIPPGSLISFGV 75 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEE------eCcEEcCCCEECCCCEECCCCEEeCCc
Confidence 67788888888888889999999999999999999999999999999 577778888888777776666666666
Q ss_pred EECc
Q psy9164 321 IVQD 324 (380)
Q Consensus 321 ~ig~ 324 (380)
.||+
T Consensus 76 ~ig~ 79 (79)
T cd05787 76 VIGD 79 (79)
T ss_pred EeCc
Confidence 6553
No 152
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.33 E-value=5.5e-12 Score=101.64 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.2
Q ss_pred cceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 347 GEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 347 ~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.++.+||+++.|||+|| |.||||+++.|
T Consensus 135 LG~I~IGd~akIGA~sV-----VlkdVP~~~tv 162 (194)
T COG1045 135 LGNIEIGDNAKIGAGSV-----VLKDVPPNATV 162 (194)
T ss_pred EcceEECCCCEECCCce-----EccCCCCCceE
Confidence 44466777777777777 66666666554
No 153
>PLN02694 serine O-acetyltransferase
Probab=99.33 E-value=4.9e-12 Score=109.76 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=50.6
Q ss_pred ceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164 220 NVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI 297 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ 297 (380)
++.|++++.||+++.|.. +++||++|.||++|.|. .++++| .. +..+. .++++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~-----~~VtLG-----------g~---g~~~~------~r~pi 214 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSIL-----HHVTLG-----------GT---GKACG------DRHPK 214 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEe-----ecceeC-----------Cc---ccccC------CCccE
Confidence 556777777777666654 44555555554444432 222222 10 11111 13455
Q ss_pred ECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
||++++||.++.|..++.||++++||++++|. + .+++++++.|.|.+
T Consensus 215 IGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~------k-dVP~~~~v~G~PAk 261 (294)
T PLN02694 215 IGDGVLIGAGATILGNVKIGEGAKIGAGSVVL------I-DVPPRTTAVGNPAR 261 (294)
T ss_pred ECCCeEECCeeEECCCCEECCCCEECCCCEEC------C-cCCCCcEEEccCcE
Confidence 56666666665555556666666655555553 2 35555556555544
No 154
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.31 E-value=8.8e-12 Score=101.46 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.8
Q ss_pred eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
++||++|+||+++.| .++++||++++||++++ |++|+|+++++
T Consensus 114 ~~Ig~~v~Ig~~a~I------------------~~~v~IG~~~~Iga~s~-----V~~dvp~~~~~ 156 (162)
T TIGR01172 114 PTVGEGVMIGAGAKV------------------LGNIEVGENAKIGANSV-----VLKDVPPGATV 156 (162)
T ss_pred CEECCCcEEcCCCEE------------------ECCcEECCCCEECCCCE-----ECCCCCCCCEE
Confidence 567777777777777 55677889999999999 89999998876
No 155
>PRK10191 putative acyl transferase; Provisional
Probab=99.29 E-value=1.6e-11 Score=97.09 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=13.6
Q ss_pred eeCCCCEECCCcEECC--CcEECCCCEEcCCc
Q psy9164 222 LVDPTATIGPGCRIGP--NVTIGPGVVIEGGV 251 (380)
Q Consensus 222 ~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~ 251 (380)
.|++++.+|+++.|++ ++.|++++.||+++
T Consensus 43 ~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~ 74 (146)
T PRK10191 43 EIQAAATIGRRFTIHHGYAVVINKNVVAGDDF 74 (146)
T ss_pred ccCCCCEECCCeEECCCCeEEECCCcEECCCC
Confidence 3444445555544444 34444444444433
No 156
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=2.6e-11 Score=86.56 Aligned_cols=75 Identities=31% Similarity=0.564 Sum_probs=55.9
Q ss_pred CCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164 243 PGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI 321 (380)
Q Consensus 243 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 321 (380)
+++.|++++.|. +++|+++|.|+++++|.++++++++.|++++.+ .++++++++.+++++.+..+.++++++.
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i------~~sii~~~~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWV------KSSIVGWNSTVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEE------eCCEEeCCCEECCCcEEecCEEECCceE
Confidence 334444444442 455677888888888889999999999999998 6778888888888887777677777766
Q ss_pred EC
Q psy9164 322 VQ 323 (380)
Q Consensus 322 ig 323 (380)
||
T Consensus 78 i~ 79 (80)
T cd05824 78 IK 79 (80)
T ss_pred EC
Confidence 54
No 157
>PLN02739 serine acetyltransferase
Probab=99.28 E-value=7.9e-12 Score=110.57 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=11.3
Q ss_pred eeEecCceEEeceeeeccccccCCCCCCCc
Q psy9164 349 DVIVQDELYVNGGQVLPHKSIGSSVPEPQI 378 (380)
Q Consensus 349 ~v~i~~~~~i~~~~v~p~~~v~~~vp~~~i 378 (380)
+++||++++||+|++ |++|+|++++
T Consensus 275 ~V~IGd~aiIGAGSV-----V~kDVP~~st 299 (355)
T PLN02739 275 NISIGAGAMVAAGSL-----VLKDVPSHSM 299 (355)
T ss_pred CeEECCCCEECCCCE-----ECCCCCCCcE
Confidence 344444444444444 4444444443
No 158
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=6.1e-11 Score=88.19 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=60.2
Q ss_pred cceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceE
Q psy9164 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI 297 (380)
Q Consensus 219 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ 297 (380)
+++++++++.+++++.+.+.++||++|.|++++.|. +++||++|.|+. .+.+++|++++.+++++.| ++++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~l------g~si 81 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFL------GHSY 81 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEE------eeeE
Confidence 467788888888888888788888888888888886 577888888864 5667777777777776666 4555
Q ss_pred ECccceeCcceEE
Q psy9164 298 IGWKCVVGQWVRM 310 (380)
Q Consensus 298 ig~~~~ig~~~~i 310 (380)
||+++.||+++.+
T Consensus 82 Ig~~v~ig~~~~~ 94 (101)
T cd05635 82 LGSWCNLGAGTNN 94 (101)
T ss_pred ECCCCEECCCcee
Confidence 5555555555443
No 159
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.27 E-value=2.6e-11 Score=102.32 Aligned_cols=63 Identities=14% Similarity=0.296 Sum_probs=44.5
Q ss_pred eEEcCCCEECCceEEee---eeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeec
Q psy9164 273 CIIGWKCVVGQWVRMEN---ITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i~~---~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~ 335 (380)
++||++|.||-++.|.. ......++||+||.||+++.+..|+.+|++|.|+++++|++++..-
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~ 222 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIY 222 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceE
Confidence 34555555555555533 1112468899999999998888889999999988888888777443
No 160
>KOG4750|consensus
Probab=99.27 E-value=1.5e-11 Score=100.05 Aligned_cols=43 Identities=16% Similarity=0.391 Sum_probs=38.7
Q ss_pred EECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCccC
Q psy9164 315 VLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM 380 (380)
Q Consensus 315 ~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv~ 380 (380)
.||+|+|||+++.| .++|+||+|++|||||+ |+|||||++..+
T Consensus 202 ~Igd~vliGaGvtI------------------LgnV~IGegavIaAGsv-----V~kDVP~~~~Av 244 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTI------------------LGNVTIGEGAVIAAGSV-----VLKDVPPNTLAV 244 (269)
T ss_pred cccCCeEEccccEE------------------eCCeeECCCcEEeccce-----EEeccCCCceec
Confidence 68899998888888 78899999999999999 999999998753
No 161
>KOG1462|consensus
Probab=99.27 E-value=1.3e-11 Score=108.66 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=47.6
Q ss_pred cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC 296 (380)
Q Consensus 217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~ 296 (380)
++..+.++++++|++++.|. .++||.+|.||+++++.+|.+++++.||+++.|++|+||+++.||+++.+ .+|
T Consensus 331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L------~nC 403 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKL------KNC 403 (433)
T ss_pred cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCee------eee
Confidence 33445555555555555553 55666666666666666666666666666666666666666666666666 444
Q ss_pred EECccceeC
Q psy9164 297 IIGWKCVVG 305 (380)
Q Consensus 297 ~ig~~~~ig 305 (380)
.||.+-.+.
T Consensus 404 ~Ig~~yvVe 412 (433)
T KOG1462|consen 404 IIGPGYVVE 412 (433)
T ss_pred EecCCcEEc
Confidence 444444443
No 162
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.25 E-value=5.2e-11 Score=89.43 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=65.2
Q ss_pred CEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECc
Q psy9164 245 VVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324 (380)
Q Consensus 245 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~ 324 (380)
+.|++++.|.+++||++|.|+ ++.+.++++++++.|++++.| .++.+++++.||+++.+. +++|++++.||+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I------~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~ 73 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVV------EDSVIMPNVGIGRNAVIR-RAIIDKNVVIPD 73 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEE------EEeEEcCCCEECCCCEEE-eEEECCCCEECC
Confidence 567777778888889999998 888888999999999988888 567788888888888885 578888888888
Q ss_pred ceEEcCCe
Q psy9164 325 ELYVNGGQ 332 (380)
Q Consensus 325 ~~~i~~~~ 332 (380)
++.+.++.
T Consensus 74 ~~~v~~~~ 81 (104)
T cd04651 74 GVVIGGDP 81 (104)
T ss_pred CCEECCCc
Confidence 88886653
No 163
>PLN02917 CMP-KDO synthetase
Probab=99.25 E-value=4.7e-10 Score=100.31 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+..++..+. +++++..+++.+++.+ .++++....++...||+.+ ..+.+.+....+.+++++||.
T Consensus 74 LL~~vi~~a~~~~~~~~-VVV~~~~e~I~~~~~~----~~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~P 147 (293)
T PLN02917 74 MIQRTWERAKLATTLDH-IVVATDDERIAECCRG----FGADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEP 147 (293)
T ss_pred HHHHHHHHHHcCCCCCE-EEEECChHHHHHHHHH----cCCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcC
Confidence 79999999998876555 3345778888888754 2455544445666787766 577777742245688999998
Q ss_pred -ccCCChHHHHHHHHhcCCcEEEEEE----EcCCCCceeEEE--ECCCCceeEEEeC------CC---CCCCCeEEEEEE
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGTIVVT----QVEEPSKYGVVL--YNEHGCIESFIEK------PQ---EFVSNKINAGMY 143 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~tl~~~----~~~~~~~~g~v~--~d~~~~v~~~~ek------~~---~~~~~~~~~giy 143 (380)
+....++.+++.+++. .+++++.. ..+++.+||.+. .|++|+++.|..+ .. +....+.++|+|
T Consensus 148 lI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy 226 (293)
T PLN02917 148 LIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ 226 (293)
T ss_pred CCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEE
Confidence 5566689999988654 33433333 456788999885 6778886644422 11 223368899999
Q ss_pred EeCHhHHhhccC-CCCCcc-cchhhhh--hcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164 144 IFNPSVLDRIEI-KPTSIE-KEIFPLM--SKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 144 i~~~~~l~~l~~-~~~~~~-~~il~~l--~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~ 199 (380)
.|+.+.|..+.. .+.+++ ++.|.++ .+++ ++.....+.....++++.++.++.+.+
T Consensus 227 ~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~ 287 (293)
T PLN02917 227 SYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALM 287 (293)
T ss_pred EeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 999999886643 222222 2222222 3444 576666655667899999998876654
No 164
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.25 E-value=9.4e-11 Score=98.18 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=27.6
Q ss_pred ceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
.+.||++++||.++.+. +++.||++++|++|+++.+. +++++++.|.|++
T Consensus 131 pi~IGd~v~IG~~~~I~------~gv~IG~~~vIgagsvV~kd-vp~~~v~~G~PAk 180 (203)
T PRK09527 131 PITIGNNVWIGSHVVIN------PGVTIGDNSVIGAGSVVTKD-IPPNVVAAGVPCR 180 (203)
T ss_pred CeEECCCcEECCCCEEc------CCCEECCCCEECCCCEEccc-CCCCcEEEeeCCE
Confidence 35556666666655554 44555555555555555543 5566666666554
No 165
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.24 E-value=1.4e-10 Score=97.23 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=74.9
Q ss_pred cceeeCCCCEECCCcEE----CCCcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeEEcC----CCEECCceEE
Q psy9164 219 GNVLVDPTATIGPGCRI----GPNVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCIIGW----KCVVGQWVRM 287 (380)
Q Consensus 219 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~ig~----~~~ig~~~~i 287 (380)
.+..+++++.++.++++ .+...||++|.|++++.|. ++.||++|.|++++.|.+...|. ......+...
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~ 121 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP 121 (192)
T ss_pred CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence 45567777777777777 3567889999999998886 68899999888877774321110 0000000000
Q ss_pred e-eeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164 288 E-NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV 350 (380)
Q Consensus 288 ~-~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v 350 (380)
. .....+.+.||++++||.++.+.++++||++++||+++.| .+ .+++++++.|.|+
T Consensus 122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v------~~-~i~~~~~~~G~Pa 178 (192)
T PRK09677 122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVV------TK-SIPENTVIAGNPA 178 (192)
T ss_pred hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEE------Cc-ccCCCcEEEecCC
Confidence 0 0011246777888888777776666666666666665555 33 2444444444443
No 166
>PRK10502 putative acyl transferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=96.94 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCccccceeeCCCCEECC--CcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee
Q psy9164 214 GDGIVGNVLVDPTATIGP--GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT 291 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~ 291 (380)
+..+++++.|++++.|.. +..|++++.|+++|.|... ..+.||++|.|++++.|... ++..-.+.-. .
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~---~~v~IG~~~~I~~~~~I~~~---~h~~~~~~~~----~ 120 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNL---GEITIGAHCVISQKSYLCTG---SHDYSDPHFD----L 120 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceeccc---CceEECCCcEECCCeEEECC---CCCCcCCCcc----c
Confidence 356677788888887753 5788888899999988753 34567787777766655210 0000000000 1
Q ss_pred EecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 292 VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 292 ~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..+...||++++||.++.+..++.||+++.||+++.+
T Consensus 121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV 157 (182)
T PRK10502 121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSV 157 (182)
T ss_pred ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEE
Confidence 1245667777777777666666666666665555554
No 167
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=101.14 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=36.5
Q ss_pred eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
.+||++|+||+++.| .++++||++++||+||+ |++|+|+++++
T Consensus 194 p~IGd~V~IGaga~I------------------lggv~IG~~a~IGAgSv-----V~~dVp~~~~v 236 (273)
T PRK11132 194 PKIREGVMIGAGAKI------------------LGNIEVGRGAKIGAGSV-----VLQPVPPHTTA 236 (273)
T ss_pred CEECCCcEEcCCCEE------------------cCCCEECCCCEECCCCE-----ECcccCCCcEE
Confidence 577888888888877 56788999999999999 99999998876
No 168
>PLN02357 serine acetyltransferase
Probab=99.22 E-value=3.7e-11 Score=107.29 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=45.6
Q ss_pred CcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeee---EecceEECccceeCcceEEc
Q psy9164 238 NVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRME 311 (380)
Q Consensus 238 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~ 311 (380)
++.|++++.||.++.|. .++||+++.|| ++|.|..+++|+... -..+++||++++||.++.|.
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIG-----------dnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il 294 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVG-----------NNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL 294 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEEC-----------CCCEEeCCceecCccccCCccCceeCCCeEECCceEEE
Confidence 44555555555555554 34555555444 333333333332210 01235556666666655554
Q ss_pred cceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 312 NITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 312 ~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
.++.||+++.||++++| .+ .++++++++|.|++
T Consensus 295 ggV~IGdga~IGAgSVV------~~-dVP~~~~v~G~PAr 327 (360)
T PLN02357 295 GNITIGEGAKIGAGSVV------LK-DVPPRTTAVGNPAR 327 (360)
T ss_pred CCeEECCCCEECCCCEE------Cc-ccCCCcEEECCCeE
Confidence 44554544444444444 32 24555555555544
No 169
>PLN02694 serine O-acetyltransferase
Probab=99.21 E-value=1e-10 Score=101.62 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=14.4
Q ss_pred CCcEE--EEeCCcccCCChHHHHHHHHhcC
Q psy9164 69 QEPFF--VLNSDIICDFPFKDLVSFHKNHG 96 (380)
Q Consensus 69 ~~~~l--v~~gD~i~~~~l~~~l~~h~~~~ 96 (380)
.|+.| .++.-++...+|.+.|.++...+
T Consensus 42 ~ep~l~~~~~~~il~~~~~~~al~~~l~~~ 71 (294)
T PLN02694 42 SEPALASYLYSTILSHSSLERSLSFHLGNK 71 (294)
T ss_pred cCccHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45543 12333445555777666665543
No 170
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.20 E-value=2.2e-10 Score=98.95 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=45.6
Q ss_pred cCeEEcCCCEECCceEEeeeeEecc----eEECccceeCcceEEccceEECCCeEECcceEEcCCeee
Q psy9164 271 EGCIIGWKCVVGQWVRMENITVLGE----CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVL 334 (380)
Q Consensus 271 ~~~~ig~~~~ig~~~~i~~~~~~~~----~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~ 334 (380)
++|+||+++.|++++.|... ..++ +.||++|+||.++.| +..||+++.||++++|..++.+
T Consensus 198 HdvvIGd~~~IgpGvsI~G~-LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 198 AGVVVGDGSDIGGGASIMGT-LSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred cCCEECCCCEECCCceecce-ecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 34667777777777775331 2345 899999999999998 6888888888888888777744
No 171
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.19 E-value=7.8e-11 Score=93.74 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=13.9
Q ss_pred ceeEecCceEEeceeeeccccccCCCCCCCc
Q psy9164 348 EDVIVQDELYVNGGQVLPHKSIGSSVPEPQI 378 (380)
Q Consensus 348 ~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~i 378 (380)
++++|+++++||++++ |++|+|++++
T Consensus 90 ~gv~Ig~~~vIgags~-----V~~~v~~~~v 115 (145)
T cd03349 90 PGVTIGDGAVIAAGAV-----VTKDVPPYAI 115 (145)
T ss_pred CCCEECCCCEECCCCE-----EccccCCCeE
Confidence 3444555555555555 5555555544
No 172
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.19 E-value=3.3e-10 Score=93.16 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=49.8
Q ss_pred CcEECCCCEEcCCcEEe---ceEEccCCEECCCcEecCeE-EcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164 238 NVTIGPGVVIEGGVCIK---RSTILRDAIVKSHSWLEGCI-IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI 313 (380)
Q Consensus 238 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~-ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~ 313 (380)
++.||+++.|+.++.|. +..||+++.|++++.|.... -.+......+.. ..+.+.||++++||.++.|.++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~-----~~~~v~IG~~~~Ig~~a~I~~g 136 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLE-----YAKPITIGDNVWIGGGVIILPG 136 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccce-----ecCCcEeCCCEEECCCCEEeCC
Confidence 44444555555554442 45778888887777663210 000000001111 1234555666666666555555
Q ss_pred eEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
+.||++++ |++++++.+ .+++++++.|.|++
T Consensus 137 v~Ig~~~~------VgagavV~~-~vp~~~vv~G~PAk 167 (169)
T cd03357 137 VTIGDNSV------IGAGSVVTK-DIPANVVAAGNPAR 167 (169)
T ss_pred CEECCCCE------ECCCCEEcc-ccCCCcEEEccccE
Confidence 55555555 544444444 35556566555543
No 173
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.19 E-value=1.6e-10 Score=100.29 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=61.0
Q ss_pred cCCCccccceeeCCCCEECCCcEECCCcEECCCCE-EcCCcE---Ee-ceEEccCCEECCCcEecCeEEcCC----CEEC
Q psy9164 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVV-IEGGVC---IK-RSTILRDAIVKSHSWLEGCIIGWK----CVVG 282 (380)
Q Consensus 212 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~~~ig~~----~~ig 282 (380)
..+..|.+.+.|.+++++|++++|.++++|+.++. +|+.+. |. .++|+++|.||.++.| ...+..+ +.||
T Consensus 176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~IG 254 (341)
T TIGR03536 176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVISVG 254 (341)
T ss_pred cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEEEC
Confidence 44566777777777777777777777777777777 666555 43 6778888888888887 3333444 5555
Q ss_pred CceEEeeeeEecceEECccceeCcceEEccc
Q psy9164 283 QWVRMENITVLGECIIGWKCVVGQWVRMENI 313 (380)
Q Consensus 283 ~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~ 313 (380)
++|.|+.+... +..||++|.||.++.+..+
T Consensus 255 e~~lIGagA~I-GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 255 EGCLLGANAGI-GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred CCcEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence 55555433222 4444444444444444333
No 174
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.7e-10 Score=106.13 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=71.1
Q ss_pred cEECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEc
Q psy9164 233 CRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRME 311 (380)
Q Consensus 233 ~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~ 311 (380)
+.|.++++|+++|.|++++.|+ .++||++|.|++++.|.+|+|+++|.|++++.+ .+++||++|.||+..
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i------~~sIi~~~~~ig~~~--- 326 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI------GDSIIGENCKIGASL--- 326 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEE------eeeEEcCCcEECCce---
Confidence 6677788888888888888887 588899999999999999999999999999999 788889999998821
Q ss_pred cceEECCCeEECcceEEcCC
Q psy9164 312 NITVLGEDVIVQDELYVNGG 331 (380)
Q Consensus 312 ~~~~ig~~~~ig~~~~i~~~ 331 (380)
.+++ +.+|.++.+.+|
T Consensus 327 ---~i~d-~~~g~~~~i~~g 342 (358)
T COG1208 327 ---IIGD-VVIGINSEILPG 342 (358)
T ss_pred ---eecc-eEecCceEEcCc
Confidence 1677 776666666433
No 175
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.17 E-value=2e-10 Score=93.50 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred ceEECccceeCcceEEccceEECCCeEECcceEEc
Q psy9164 295 ECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329 (380)
Q Consensus 295 ~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~ 329 (380)
.++||++++||.++.+..+++||++++||+++.|.
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~ 147 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL 147 (162)
T ss_pred CCEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence 35667777777776666667777777766666663
No 176
>PRK10191 putative acyl transferase; Provisional
Probab=99.16 E-value=3e-10 Score=89.90 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=18.0
Q ss_pred EECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
.||++++||.++.+..++.||++++||+++.+
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 44555555555555555666666665555555
No 177
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.16 E-value=2.3e-10 Score=107.26 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=69.1
Q ss_pred CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEEC
Q psy9164 238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG 317 (380)
Q Consensus 238 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig 317 (380)
++.+...+.|++++.|.++.|+++|.|+. .+.+|+||++|.|+++|.| .+++|++++.|++++.+.+ ++|+
T Consensus 276 ~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i------~~svi~~~~~i~~~~~i~~-~ii~ 346 (380)
T PRK05293 276 VNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVV------KDSVIMPGAKIGENVVIER-AIIG 346 (380)
T ss_pred CCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEE------ECCEEeCCCEECCCeEEeE-EEEC
Confidence 33444455666666666788899999963 5678999999999999999 6888999999999998866 8889
Q ss_pred CCeEECcceEEcCCee
Q psy9164 318 EDVIVQDELYVNGGQV 333 (380)
Q Consensus 318 ~~~~ig~~~~i~~~~v 333 (380)
+++.||+++.+.++..
T Consensus 347 ~~~~i~~~~~i~~~~~ 362 (380)
T PRK05293 347 ENAVIGDGVIIGGGKE 362 (380)
T ss_pred CCCEECCCCEEcCCCc
Confidence 9999999888876543
No 178
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.16 E-value=4.3e-10 Score=85.60 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=17.7
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
.++.||++++|+.++.+..++.|++++++++++.+
T Consensus 57 ~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v 91 (109)
T cd04647 57 APIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVV 91 (109)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 44444555555555554444555555554444444
No 179
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.14 E-value=2.9e-10 Score=85.14 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=15.2
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
+.++||++++|+.++.+..++.|+++++|++++.|
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i 87 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVV 87 (101)
T ss_pred CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEE
Confidence 34444444444444444444444444443333333
No 180
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.12 E-value=9.7e-10 Score=83.09 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=29.7
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
+.+.||++++||.++.+..++.||+++.|++++.+ .+ .+.++.++.|.|++
T Consensus 55 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v------~~-~~~~~~~~~G~Pa~ 105 (107)
T cd05825 55 APIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV------VR-DLPAWTVYAGNPAV 105 (107)
T ss_pred CCEEECCCCEECCCCEECCCCEECCCCEECCCCEE------eC-cCCCCCEEECCccE
Confidence 45666777777777666655555555555555555 33 24555556555544
No 181
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.12 E-value=3.2e-10 Score=95.84 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=16.2
Q ss_pred eEEccCCEECCCcEe---------cCeEEcCCCEECCceEE
Q psy9164 256 STILRDAIVKSHSWL---------EGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 256 ~~i~~~~~i~~~~~i---------~~~~ig~~~~ig~~~~i 287 (380)
.+||+||.||.++.| ..++|++||.||.++.+
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~ 197 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEV 197 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccce
Confidence 345555555555544 13555555555555433
No 182
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.11 E-value=4.4e-10 Score=106.86 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccC-------------------CEECCCcEecCeE
Q psy9164 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-------------------AIVKSHSWLEGCI 274 (380)
Q Consensus 214 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~ 274 (380)
+..+.+ ++|+++++|+ ++.|+ +++|+++|.|+++|.|.+++++.. +.|+++|.+.+++
T Consensus 310 ~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~v 386 (436)
T PLN02241 310 DCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAI 386 (436)
T ss_pred CCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceE
Confidence 445554 8899999999 99995 789999999999999998887552 2677777777777
Q ss_pred EcCCCEECCceEE
Q psy9164 275 IGWKCVVGQWVRM 287 (380)
Q Consensus 275 ig~~~~ig~~~~i 287 (380)
|++++.||+++.+
T Consensus 387 I~~~v~Ig~~~~i 399 (436)
T PLN02241 387 IDKNARIGKNVVI 399 (436)
T ss_pred ecCCCEECCCcEE
Confidence 7777777777766
No 183
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.11 E-value=5.4e-10 Score=96.52 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCC-EECCCcEecCeEEcCCCEECCceEEee
Q psy9164 226 TATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDA-IVKSHSWLEGCIIGWKCVVGQWVRMEN 289 (380)
Q Consensus 226 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~-~i~~~~~i~~~~ig~~~~ig~~~~i~~ 289 (380)
+++|.+..++.-+++||+++.|.+.++|. -++ +||+. .| ++.|+++|.||++|.|++
T Consensus 153 gVRI~~~~rVRlGAyLGeGtvVm~~a~VN-----~nAgtIG~~-iI-~g~I~HdvvIGd~~~Igp 210 (319)
T TIGR03535 153 GVRIGDADRVRLGAHLAEGTTVMHEGFVN-----FNAGTLGAS-MV-EGRISAGVVVGDGSDIGG 210 (319)
T ss_pred ccEECCCceeeeccEECCCCEEcCCCEEc-----cCceEecCc-eE-EEEEccCCEECCCCEECC
Confidence 44444444444444444444444444442 222 23331 22 356666666666666643
No 184
>PLN02357 serine acetyltransferase
Probab=99.09 E-value=1e-09 Score=98.20 Aligned_cols=85 Identities=26% Similarity=0.265 Sum_probs=59.6
Q ss_pred ceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecce
Q psy9164 220 NVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGEC 296 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~ 296 (380)
.+.|++++.||+++.|.+ +++||++|+||++|.|. +++||.. +......+++||++|.||.++.| .+++
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~I-----lggV 297 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCI-----LGNI 297 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEE-----ECCe
Confidence 456777777877777764 56777777777777764 3444432 11111245889999999999888 5788
Q ss_pred EECccceeCcceEEcc
Q psy9164 297 IIGWKCVVGQWVRMEN 312 (380)
Q Consensus 297 ~ig~~~~ig~~~~i~~ 312 (380)
.||+++.||+++.+..
T Consensus 298 ~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 298 TIGEGAKIGAGSVVLK 313 (360)
T ss_pred EECCCCEECCCCEECc
Confidence 8888888888877765
No 185
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.07 E-value=7.4e-10 Score=84.26 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=15.8
Q ss_pred ECccceeCcceEEccceEECCCeEECcceEEcCCe
Q psy9164 298 IGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332 (380)
Q Consensus 298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~ 332 (380)
...++.||+++.++.++.+.+++.||+++.+++++
T Consensus 55 ~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~ 89 (109)
T cd04647 55 TSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGS 89 (109)
T ss_pred ccCCeEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence 34444444444444444444444444444444433
No 186
>PLN02739 serine acetyltransferase
Probab=99.06 E-value=7.2e-10 Score=98.28 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=27.9
Q ss_pred eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeEe
Q psy9164 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIV 352 (380)
Q Consensus 296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i 352 (380)
+.||++++||.++.|..++.||+++.||++++| .+ .+++++++.|.|.++
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV------~k-DVP~~stvvG~PAri 307 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV------LK-DVPSHSMVAGNPAKL 307 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE------CC-CCCCCcEEEecCCEE
Confidence 445556666666555555555555554444444 43 366676777766653
No 187
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.05 E-value=2.1e-09 Score=80.49 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=9.0
Q ss_pred cCeEEcCCCEECCceEE
Q psy9164 271 EGCIIGWKCVVGQWVRM 287 (380)
Q Consensus 271 ~~~~ig~~~~ig~~~~i 287 (380)
..++|++++.|+.++.+
T Consensus 53 ~~~~Ig~~~~Ig~~~~i 69 (101)
T cd03354 53 RHPTIGDNVVIGAGAKI 69 (101)
T ss_pred CCCEECCCcEEcCCCEE
Confidence 44555555555555555
No 188
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.04 E-value=7.6e-10 Score=89.38 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=54.3
Q ss_pred ccccceeeCCCCEECCCcEECC--CcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEe
Q psy9164 216 GIVGNVLVDPTATIGPGCRIGP--NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL 293 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~ 293 (380)
.+.-...|+|.++||++..|.. +++||+.+.||++|.|. .++++|....=.. .
T Consensus 63 ~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~-----~gVTLGgtg~~~g--------------------~ 117 (194)
T COG1045 63 RFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIY-----HGVTLGGTGKESG--------------------K 117 (194)
T ss_pred HhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEE-----cceEecCCCCcCC--------------------C
Confidence 3345667777777777777753 34566666665555542 2222221100000 1
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
.+-.||+++.||++++|-.+..||++++||+|++|. +.++++++++|-|.+
T Consensus 118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVl-------kdVP~~~tvvGvPAr 168 (194)
T COG1045 118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL-------KDVPPNATVVGVPAR 168 (194)
T ss_pred CCCccCCCeEECCCCEEEcceEECCCCEECCCceEc-------cCCCCCceEecCcce
Confidence 233445555555555555556667777766666663 234555555554443
No 189
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.03 E-value=2.3e-09 Score=79.74 Aligned_cols=75 Identities=27% Similarity=0.330 Sum_probs=52.4
Q ss_pred CCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289 (380)
Q Consensus 213 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~ 289 (380)
++..+.++++|++++.|++++.|+++++||++|.|+. .+.++++++++.++++++|.+++||+++.||+++...+
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 3444555556666666666666666666666666643 45688888888888888888888888888888877643
No 190
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.00 E-value=3.2e-09 Score=87.89 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=63.8
Q ss_pred cceeeCCCC--EECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecC-eEEcCCCEECCceEEeeeeEecc
Q psy9164 219 GNVLVDPTA--TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITVLGE 295 (380)
Q Consensus 219 ~~~~i~~~~--~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~ig~~~~i~~~~~~~~ 295 (380)
++++|.|+. .+|.++.||+++.|+.+|.|++.+.| .||++|.|++++.+.. ....+......+..+ .+.
T Consensus 58 ~~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~-----~~~ 129 (183)
T PRK10092 58 TEAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAEL-----GKP 129 (183)
T ss_pred CCEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHcccccee-----cCC
Confidence 356666655 34666666666666666666665543 6888888887776632 111111111111111 234
Q ss_pred eEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
+.||++++||.++.+. +++.||++++|++++++.+. +++++++.|.|++
T Consensus 130 v~IGd~v~IG~~a~I~------~gv~IG~~~vIgagsvV~~d-i~~~~i~~G~PAr 178 (183)
T PRK10092 130 VTIGNNVWIGGRAVIN------PGVTIGDNVVVASGAVVTKD-VPDNVVVGGNPAR 178 (183)
T ss_pred eEECCCcEECCCCEEC------CCCEECCCCEECCCCEEccc-cCCCcEEEecCcE
Confidence 5556666666665554 45555555555555555543 5566666666554
No 191
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.00 E-value=1.6e-09 Score=102.72 Aligned_cols=79 Identities=10% Similarity=0.262 Sum_probs=63.8
Q ss_pred CcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEE-C------------------ccceeCcceEE
Q psy9164 250 GVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECII-G------------------WKCVVGQWVRM 310 (380)
Q Consensus 250 ~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~i-g------------------~~~~ig~~~~i 310 (380)
++.+.++.|+++|.| +++.|.+|+||++|.||++|.|. ++++ | .++.||++|.|
T Consensus 303 ~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~------~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i 375 (429)
T PRK02862 303 DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIE------DTLVMGADFYESSEEREELRKEGKPPLGIGEGTTI 375 (429)
T ss_pred ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEE------eeEEecCcccccccccccccccCCcccEECCCCEE
Confidence 567778899999999 88999999999999999999994 4444 3 27888888888
Q ss_pred ccceEECCCeEECcceEEcCCeeecc
Q psy9164 311 ENITVLGEDVIVQDELYVNGGQVLPH 336 (380)
Q Consensus 311 ~~~~~ig~~~~ig~~~~i~~~~v~~~ 336 (380)
.. ++|++++.||+++.+.++..++.
T Consensus 376 ~~-~ii~~~~~i~~~~~~~~~~~~~~ 400 (429)
T PRK02862 376 KR-AIIDKNARIGNNVRIVNKDNVEE 400 (429)
T ss_pred EE-EEECCCcEECCCcEEecCCCccc
Confidence 65 78899999999999976554333
No 192
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.98 E-value=2.8e-09 Score=75.59 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=15.9
Q ss_pred eEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 296 ~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..||++++++.++.+..++.|++++.|++++.|
T Consensus 45 ~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 45 TIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 444444444444444444555555554444443
No 193
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.95 E-value=5.1e-09 Score=97.11 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=56.7
Q ss_pred CCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcce-E
Q psy9164 231 PGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWV-R 309 (380)
Q Consensus 231 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~-~ 309 (380)
+++.+.+.+.|+++|.| .+++|...+.||++|.|.+++|++++.||++|.|++ +...+++|++++.|+.+. .
T Consensus 247 ~~~~i~~~~~i~~~~~i------~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~-~~i~~s~i~~~~~i~~~~~~ 319 (353)
T TIGR01208 247 DESKIRGRVVVGEGAKI------VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRD-AEVEHSIVLDESVIEGVQAR 319 (353)
T ss_pred CCCEEcCCEEECCCCEE------eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEee-eEEEeeEEcCCCEEcCCcce
Confidence 34444445555555555 444445556666666666778888888888888863 444677777777777663 4
Q ss_pred EccceEECCCeEECcceEE
Q psy9164 310 MENITVLGEDVIVQDELYV 328 (380)
Q Consensus 310 i~~~~~ig~~~~ig~~~~i 328 (380)
+. ++++++++.|++++.+
T Consensus 320 ~~-~~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 320 IV-DSVIGKKVRIKGNRRR 337 (353)
T ss_pred ee-cCEEcCCCEECCCccc
Confidence 43 4666666666666555
No 194
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.91 E-value=1e-08 Score=72.64 Aligned_cols=74 Identities=27% Similarity=0.268 Sum_probs=39.3
Q ss_pred eeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECcc
Q psy9164 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWK 301 (380)
Q Consensus 222 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~ 301 (380)
.|++++.|++++.|++++.||++|.|++++.+.+..... ....+.|++++.+++++.+ ..++.+|++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i-----~~~~~ig~~ 68 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVI-----HGGVKIGDN 68 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEE-----eCCCEECCC
Confidence 456666666666666666666666666666665332111 1123555566666655555 223444444
Q ss_pred ceeCcce
Q psy9164 302 CVVGQWV 308 (380)
Q Consensus 302 ~~ig~~~ 308 (380)
+.+++++
T Consensus 69 ~~i~~~s 75 (78)
T cd00208 69 AVIGAGA 75 (78)
T ss_pred CEECcCc
Confidence 4444443
No 195
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.90 E-value=3.2e-08 Score=93.75 Aligned_cols=191 Identities=20% Similarity=0.233 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC----CCcEEEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS----QEPFFVL 75 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~----~~~~lv~ 75 (380)
||+++++.+...++.+.+++++. +.+.+++.+.+... ..-.++.++...+|+.++..|..++... +.-++++
T Consensus 40 llq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vl 116 (478)
T PRK15460 40 MLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVL 116 (478)
T ss_pred HHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 68999999999999888888876 45677777654210 1124677899999999988777666321 2347889
Q ss_pred eCCcccCCC--hHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECCC---------CceeEEEeCCCCC--------
Q psy9164 76 NSDIICDFP--FKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNEH---------GCIESFIEKPQEF-------- 133 (380)
Q Consensus 76 ~gD~i~~~~--l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~-------- 133 (380)
++|++.... |.+.++.. .+.+.-+|+...+..+..+||++..++. .+|..|.|||...
T Consensus 117 PaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~ 196 (478)
T PRK15460 117 AADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVAS 196 (478)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHc
Confidence 999965432 44444422 2236677777778788899999998742 2699999999732
Q ss_pred CCCeEEEEEEEeCHhHH-hhccC-----------------CCCC---cccchhhh----------hhcCCcEEEEEeccE
Q psy9164 134 VSNKINAGMYIFNPSVL-DRIEI-----------------KPTS---IEKEIFPL----------MSKEKQLYAMELKGF 182 (380)
Q Consensus 134 ~~~~~~~giyi~~~~~l-~~l~~-----------------~~~~---~~~~il~~----------l~~~~~i~~~~~~~~ 182 (380)
...+.|+|||+|+.+.+ +.++. .... +..+.++. |-+..++...+.+--
T Consensus 197 G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~ 276 (478)
T PRK15460 197 GEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAG 276 (478)
T ss_pred CCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCC
Confidence 22478999999998765 33321 0001 11222222 223345777777777
Q ss_pred EEecCChhhHHH
Q psy9164 183 WMDVGQPRDFLK 194 (380)
Q Consensus 183 ~~~i~~~~~~~~ 194 (380)
|.|+|++.++.+
T Consensus 277 WsDvGsW~sl~~ 288 (478)
T PRK15460 277 WSDVGSWSSLWE 288 (478)
T ss_pred ccccCCHHHHHH
Confidence 999999887654
No 196
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=6.5e-08 Score=84.35 Aligned_cols=192 Identities=20% Similarity=0.229 Sum_probs=126.4
Q ss_pred CHHHHHHHHHH-cCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCC-C-CcEEEEe
Q psy9164 1 MLLHQIEALVE-AGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKS-Q-EPFFVLN 76 (380)
Q Consensus 1 li~~~l~~l~~-~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~-~-~~~lv~~ 76 (380)
|++.+++.+.. .+.++++++++. +...+++.+.+... +..-.+..++....|+.++..+.-.+... . .-++|++
T Consensus 36 llq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlp 113 (333)
T COG0836 36 LLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLP 113 (333)
T ss_pred HHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEec
Confidence 67888999988 678999999986 44666666654111 11111567889999999998776655322 2 2378999
Q ss_pred CCcccCCC--hHHHHHHH---HhcCCcEEEEEEEcCCCCceeEEEECCC------CceeEEEeCCCCC--------CCCe
Q psy9164 77 SDIICDFP--FKDLVSFH---KNHGKEGTIVVTQVEEPSKYGVVLYNEH------GCIESFIEKPQEF--------VSNK 137 (380)
Q Consensus 77 gD~i~~~~--l~~~l~~h---~~~~~~~tl~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~--------~~~~ 137 (380)
+|++..-. |.+.++.. .+++.-+|+...+..+..+||++...+. -+|.+|+|||... ...+
T Consensus 114 sDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~ 193 (333)
T COG0836 114 SDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYL 193 (333)
T ss_pred CcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceE
Confidence 99955432 55555433 3455667777777778899999998532 3689999999732 2357
Q ss_pred EEEEEEEeCHhHH-hhccC--------------CCCCcc-----cch----------hhhhhcCCcEEEEEeccEEEecC
Q psy9164 138 INAGMYIFNPSVL-DRIEI--------------KPTSIE-----KEI----------FPLMSKEKQLYAMELKGFWMDVG 187 (380)
Q Consensus 138 ~~~giyi~~~~~l-~~l~~--------------~~~~~~-----~~i----------l~~l~~~~~i~~~~~~~~~~~i~ 187 (380)
.|+|+++|+...+ +.++. ...+.. .+. +..|-+..++...+.+-.|-|+|
T Consensus 194 WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlG 273 (333)
T COG0836 194 WNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLG 273 (333)
T ss_pred eeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCccccc
Confidence 8999999998765 33321 000000 111 12234556788888888899999
Q ss_pred ChhhHHH
Q psy9164 188 QPRDFLK 194 (380)
Q Consensus 188 ~~~~~~~ 194 (380)
++...++
T Consensus 274 sW~Al~~ 280 (333)
T COG0836 274 SWHALWE 280 (333)
T ss_pred CHHHHHH
Confidence 9877653
No 197
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.86 E-value=9.5e-09 Score=96.98 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=64.9
Q ss_pred cccceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289 (380)
Q Consensus 217 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~ 289 (380)
+.++++|++++.|+ +++|. +++||++|.|+++|.|.+|+|+++|.|+++|.|.+|++++++.|++++.+..
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 44678899999998 88886 7999999999999999999999999999999999999999999999999844
No 198
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.85 E-value=2.7e-08 Score=79.18 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=24.4
Q ss_pred ecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 293 ~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..++.||++|+||.++.+..++.||+++.||+++.|
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V 106 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV 106 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 356777777777777776666666666666666555
No 199
>KOG3121|consensus
Probab=98.82 E-value=9.1e-09 Score=77.70 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=20.4
Q ss_pred CeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECC
Q psy9164 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318 (380)
Q Consensus 272 ~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~ 318 (380)
+..||+++.|++.|.+........+.+|.++.||++|.+++-+.|.+
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild 130 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILD 130 (184)
T ss_pred eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccC
Confidence 34555555555555553332223333333333344433333333333
No 200
>KOG4042|consensus
Probab=98.78 E-value=1.9e-08 Score=76.61 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=64.2
Q ss_pred ceeeCCCCEECCCcEECCCcEECCCCEEcCCcEEe----ceEEccCCEECCCcEecC--------------eEEcCCCEE
Q psy9164 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK----RSTILRDAIVKSHSWLEG--------------CIIGWKCVV 281 (380)
Q Consensus 220 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~ig~~~~i 281 (380)
++.|.|++.+...+.|...++|+++|++.+.+++. ..+||+++.|.+.+.|.+ -+||.+...
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 46677788887777788888888888888888774 778888888888777632 456666655
Q ss_pred CCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 282 GQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 282 g~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
.-+|.. ....+|++-.|+..+.+++++.+-++|.||+.+.+
T Consensus 88 eVgc~s------~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v 128 (190)
T KOG4042|consen 88 EVGCKS------SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTV 128 (190)
T ss_pred Eeechh------hhhhhcCcceEeeeeEecCCcEEcCCceeccceEE
Confidence 555555 33334444444444333333444444444444444
No 201
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.77 E-value=4.1e-08 Score=91.43 Aligned_cols=80 Identities=16% Similarity=0.346 Sum_probs=55.6
Q ss_pred CCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164 242 GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI 321 (380)
Q Consensus 242 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 321 (380)
-+.+.|++.+.+.+++||++|.|+.+ .+.+++|+++|.|+++|.|.++.+..++.+|.++.+ .++.+++++.|+.++.
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~ 358 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVV 358 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEE-eeeEECCCCEECCCCE
Confidence 34445555555566777777777765 677778888888888888866666666666666666 4666777777777777
Q ss_pred EC
Q psy9164 322 VQ 323 (380)
Q Consensus 322 ig 323 (380)
||
T Consensus 359 i~ 360 (361)
T TIGR02091 359 IG 360 (361)
T ss_pred eC
Confidence 76
No 202
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=79.66 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=28.2
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV 350 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v 350 (380)
+.++||+++|||.++.|.+++.||++++ |++++++.++ ++.++++.|.|+
T Consensus 123 ~~v~IG~~vwIG~~a~IlpGV~IG~gav------igagsVVtkd-vp~~~iv~G~Pa 172 (190)
T COG0110 123 GPVTIGEDVWIGAGAVILPGVTIGEGAV------IGAGSVVTKD-VPPYGIVAGNPA 172 (190)
T ss_pred CCeEECCCeEEcCccEECCCEEECCCcE------EeeCCEEeCc-cCCCeEEeCCcc
Confidence 4577777777777766666555555555 5555544443 344444444443
No 203
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.74 E-value=6.4e-08 Score=91.78 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=41.4
Q ss_pred EeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceE
Q psy9164 253 IKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELY 327 (380)
Q Consensus 253 i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~ 327 (380)
+.+++|+++|.| +++.|.+|+|+++|.|+++|.|.++.+..++.||+++.| .++.++.++.|+++++||+++.
T Consensus 325 ~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 325 AINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred EEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCCCC
Confidence 345666666666 456666666666666666666654444445555555554 2344555555666666665544
No 204
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.73 E-value=5e-08 Score=91.09 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=66.0
Q ss_pred CCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEE
Q psy9164 243 PGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322 (380)
Q Consensus 243 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i 322 (380)
+.+.|++++.|.+|+||++|.|+ +.+.+|+|+++|.|+++|.| .++++++++.|++++.+.+ ++|++++.|
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i------~~sii~~~~~I~~~~~i~~-~ii~~~~~v 347 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALI------KNCIIMQRTVIGEGAHLEN-VIIDKDVVI 347 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEE------EeeEEeCCCEECCCCEEEE-EEECCCCEE
Confidence 55666666777888999999997 46889999999999999999 7788888888888888866 888888888
Q ss_pred CcceEEcCC
Q psy9164 323 QDELYVNGG 331 (380)
Q Consensus 323 g~~~~i~~~ 331 (380)
|+++.+.++
T Consensus 348 ~~~~~~~~~ 356 (369)
T TIGR02092 348 EPNVKIAGT 356 (369)
T ss_pred CCCCEeCCC
Confidence 888877543
No 205
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=6.7e-08 Score=86.99 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=66.3
Q ss_pred ECCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCe
Q psy9164 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320 (380)
Q Consensus 241 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~ 320 (380)
.-+-+.+.+++.+.+|.++++|.|.. .+.+|+|+.++.|+.+|.| .+|+|=.++.||++|.+.. ++|.++|
T Consensus 282 ~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i------~~svim~~~~IG~~~~l~~-aIIDk~v 352 (393)
T COG0448 282 NLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVI------ENSVIMPDVEIGEGAVLRR-AIIDKNV 352 (393)
T ss_pred CCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEE------EeeEEeCCcEECCCCEEEE-EEeCCCc
Confidence 33445555566678888999999875 8889999999999999999 6677777788888888876 8889999
Q ss_pred EECcceEEcCCe
Q psy9164 321 IVQDELYVNGGQ 332 (380)
Q Consensus 321 ~ig~~~~i~~~~ 332 (380)
.|++|+.|+...
T Consensus 353 ~I~~g~~i~~~~ 364 (393)
T COG0448 353 VIGEGVVIGGDK 364 (393)
T ss_pred EeCCCcEEcCCc
Confidence 999999998764
No 206
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=98.73 E-value=4.4e-07 Score=72.78 Aligned_cols=136 Identities=24% Similarity=0.367 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+|++|.++|+.+|+||+||..+++ +||.+ ..++++.+.+....-.+..++.+|++++. +.-|+.+|.+
T Consensus 33 lIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvyN~kY~~yNn~ySlyla~d~l~----ntYiidsDny 104 (231)
T COG4750 33 LIERQIEQLREAGIDDITIVVGYLKEQF-EYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLN----NTYIIDSDNY 104 (231)
T ss_pred cHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHH---hcCeEEEeCchHHhhhhHHHHHHHHHHhc----ccEEeccchH
Confidence 7999999999999999999999999987 56655 34899999999888899999999999993 3446688875
Q ss_pred cCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhc
Q psy9164 81 CDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI 153 (380)
Q Consensus 81 ~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l 153 (380)
...+ ++..+..+ ..-.....+....--.+..+.+++++.+.-.. ...++.+|+..|+....+.+
T Consensus 105 l~kN---if~~~~~~---S~Yfav~~~~~tnEw~l~~~~~~ki~~v~Igg---~~~~imsG~sff~~~~~~ki 168 (231)
T COG4750 105 LTKN---IFLTKESH---SKYFAVYRSGKTNEWLLIYNSDGKITRVDIGG---LNGYIMSGISFFDAQFSNKI 168 (231)
T ss_pred hhhh---hhhcCccc---ceEEEEEecCCCceeEEEEcCCCcEEEEEecC---cccceEeeeeeecchhHHHH
Confidence 5422 22222222 22222222332232356778899998876532 34678899999998766544
No 207
>KOG3121|consensus
Probab=98.72 E-value=4.9e-08 Score=73.83 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=33.4
Q ss_pred eEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 256 STILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 256 ~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
..||+++.|+++|.+.-+.||..+.+|.++.| |.+|.+.+.|.|.+++++.+...+.+.+.+
T Consensus 85 ~hiGdhVFieE~cVVnAAqIgsyVh~Gknavi-----------GrrCVlkdCc~ild~tVlPpet~vppy~~~ 146 (184)
T KOG3121|consen 85 VHIGDHVFIEEECVVNAAQIGSYVHLGKNAVI-----------GRRCVLKDCCRILDDTVLPPETLVPPYSTI 146 (184)
T ss_pred eeecceEEEecceEeehhhheeeeEeccceeE-----------cCceEhhhheeccCCcccCcccccCCceEE
Confidence 34666666666666655666666555555555 444444444555555555555554444444
No 208
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=98.63 E-value=3.7e-06 Score=73.27 Aligned_cols=185 Identities=16% Similarity=0.213 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC-CCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN-KSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~-~~~~~~lv~~gD~ 79 (380)
||+|+++.+..+++++|+|++. .+.+.+++.+ ++.++....+....|+. ++..+...+. ...+-++++.||.
T Consensus 26 li~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~----~g~~~v~~~~~~~~Gt~-r~~~~~~~l~~~~~d~Vli~~gD~ 98 (238)
T TIGR00466 26 MIVHVAENANESGADRCIVATD--DESVAQTCQK----FGIEVCMTSKHHNSGTE-RLAEVVEKLALKDDERIVNLQGDE 98 (238)
T ss_pred HHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH----cCCEEEEeCCCCCChhH-HHHHHHHHhCCCCCCEEEEEcCCc
Confidence 6899999999999999999875 3556666644 34554333333444543 3443433331 1134478889998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCc-----eeEEEECCCCceeEEEeCCC----C-------CC--CCeEE
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK-----YGVVLYNEHGCIESFIEKPQ----E-------FV--SNKIN 139 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~-----~g~v~~d~~~~v~~~~ek~~----~-------~~--~~~~~ 139 (380)
+....+.++++.+++...+++.+..+..++.. ...+..|.+|+.+.|...+. + +. ..+..
T Consensus 99 Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h 178 (238)
T TIGR00466 99 PFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRH 178 (238)
T ss_pred CcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccccccccceeEE
Confidence 55556899999886655666766666554221 23344467777766665421 1 01 13568
Q ss_pred EEEEEeCHhHHhhccCCC-CCccc----chhhhhhcCCcEEEEEeccE-EEecCChhhH
Q psy9164 140 AGMYIFNPSVLDRIEIKP-TSIEK----EIFPLMSKEKQLYAMELKGF-WMDVGQPRDF 192 (380)
Q Consensus 140 ~giyi~~~~~l~~l~~~~-~~~~~----~il~~l~~~~~i~~~~~~~~-~~~i~~~~~~ 192 (380)
.|+|.|++++|+.+..-+ ..++. |-+..|-...++.....+.. ...++||+|+
T Consensus 179 ~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 179 IGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred EEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 999999999998874322 22221 23444444446776666544 3588888874
No 209
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.59 E-value=6.5e-07 Score=73.76 Aligned_cols=86 Identities=16% Similarity=0.323 Sum_probs=54.5
Q ss_pred CCCCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeE
Q psy9164 242 GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVI 321 (380)
Q Consensus 242 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 321 (380)
-.++.||+++.++-.++++...+|+++.|...+++.++.|+.+|.+ .+++..+.+++||+++.|+...++..+-.
T Consensus 20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv-----~gNV~ve~dayiGE~~sI~gkl~v~gdLd 94 (277)
T COG4801 20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKV-----TGNVIVENDAYIGEFSSIKGKLTVIGDLD 94 (277)
T ss_pred eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEe-----eccEEEcCceEEeccceeeeeEEEecccc
Confidence 3344444555555455666666666666666666677777777766 45666677777777777766666666666
Q ss_pred ECcceEEcCCe
Q psy9164 322 VQDELYVNGGQ 332 (380)
Q Consensus 322 ig~~~~i~~~~ 332 (380)
+|+++.|-+|.
T Consensus 95 ig~dV~Ieggf 105 (277)
T COG4801 95 IGADVIIEGGF 105 (277)
T ss_pred cccceEEecCe
Confidence 66666666554
No 210
>KOG4750|consensus
Probab=98.57 E-value=1.7e-07 Score=76.82 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=37.9
Q ss_pred EEcCCCEECCceEEeeee---EecceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeeccee
Q psy9164 274 IIGWKCVVGQWVRMENIT---VLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV 350 (380)
Q Consensus 274 ~ig~~~~ig~~~~i~~~~---~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v 350 (380)
++|+++.|..+++++..- -.++-.||+|++||.++.|. .++.||+|+.|++|+++-.+ ++.+.+.+|+|+
T Consensus 176 vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtIL------gnV~IGegavIaAGsvV~kD-VP~~~~AvGnPA 248 (269)
T KOG4750|consen 176 VVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTIL------GNVTIGEGAVIAAGSVVLKD-VPPNTLAVGNPA 248 (269)
T ss_pred EeccceeeecceeeccccccccccCCcccCCeEEccccEEe------CCeeECCCcEEeccceEEec-cCCCceecCCch
Confidence 444555555555553210 01233566666666665544 45555555556666655544 566667777766
Q ss_pred E
Q psy9164 351 I 351 (380)
Q Consensus 351 ~ 351 (380)
+
T Consensus 249 k 249 (269)
T KOG4750|consen 249 K 249 (269)
T ss_pred h
Confidence 5
No 211
>KOG1460|consensus
Probab=98.57 E-value=2.8e-07 Score=78.99 Aligned_cols=121 Identities=31% Similarity=0.409 Sum_probs=86.2
Q ss_pred ECCCcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccc
Q psy9164 235 IGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI 313 (380)
Q Consensus 235 i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~ 313 (380)
|-.+++|.+.+.+.+.++|+ |+.||.+++||+++++.+|+|-++|.|.+|+.+ -++++|..+.||.++.+..-
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavV------l~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVV------LHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceE------Eeeeecccccccceeeeccc
Confidence 33455555555555555555 556688888999999999999999999999888 68999999999999887532
Q ss_pred eEECCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 314 TVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 314 ~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
-+-..... .- ..-+++|+.+.++|.+.|-+.-|+|+++++.++- ++||
T Consensus 359 pv~~s~~~--~~---------------~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~-~eIi 406 (407)
T KOG1460|consen 359 PVEPSPNL--PF---------------AALTILGADVSVEDEVIVLNSIVLPNKELNVSVQ-DEII 406 (407)
T ss_pred ccccCCCC--Cc---------------ceeEEecccceecceeEEeeeeEecCCccceeee-ccee
Confidence 11100000 00 0225667888899999998888889999988876 3554
No 212
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.50 E-value=5.4e-06 Score=71.63 Aligned_cols=175 Identities=15% Similarity=0.190 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEee----cCCCCCCchHHHHhHHhhCC---CCCcE
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSH----ENEPLGTAGPLALAKDILNK---SQEPF 72 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~----~~~~~gt~~al~~a~~~i~~---~~~~~ 72 (380)
||+|+++.+.+++ +++|+|++ ..+.+.+++.+ .+..+.+.. .....|+.++++.+.+.+.. ..+.+
T Consensus 28 ll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~v 101 (223)
T cd02513 28 LIAWTIEAALESKLFDRVVVST--DDEEIAEVARK----YGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIV 101 (223)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH----hCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEE
Confidence 6899999999987 78887765 34566666543 233222222 13345778889988887742 12568
Q ss_pred EEEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCC-ceeEEEeCC-----CCCCCCeEEEEEEE
Q psy9164 73 FVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG-CIESFIEKP-----QEFVSNKINAGMYI 144 (380)
Q Consensus 73 lv~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~-~v~~~~ek~-----~~~~~~~~~~giyi 144 (380)
+++.||. +....+.++++.+.+.+++.++.+.+..+...++... ++++ .+..+.++. ..+.....+.|+|+
T Consensus 102 lv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~ 180 (223)
T cd02513 102 VLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGL-DDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYI 180 (223)
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheee-ccCCceeccCcccccCCcCCChhHeeECCEEEE
Confidence 9999999 6677799999999887777676666655544443332 2222 222222211 12233456889999
Q ss_pred eCHhHHhhccCCCCCcccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHH
Q psy9164 145 FNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKG 195 (380)
Q Consensus 145 ~~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a 195 (380)
++++.+...... + .+++..+.... ...+|+++.|+..+
T Consensus 181 ~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~~~a 219 (223)
T cd02513 181 AKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDFELA 219 (223)
T ss_pred EEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHHHHH
Confidence 999977443111 0 34565665555 47999999998665
No 213
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.48 E-value=4.3e-07 Score=90.71 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=8.1
Q ss_pred eEEcCCCEECCceEE
Q psy9164 273 CIIGWKCVVGQWVRM 287 (380)
Q Consensus 273 ~~ig~~~~ig~~~~i 287 (380)
+.||++|.|+++|.+
T Consensus 617 v~IGd~~~I~~~~~i 631 (695)
T TIGR02353 617 VTIGDDSTLNEGSVI 631 (695)
T ss_pred eEECCCCEECCCCEE
Confidence 355555555555555
No 214
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.46 E-value=8.4e-07 Score=88.70 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=32.4
Q ss_pred cceEECccceeCcceEEccceEECCCeEECcceEEcCCeeecceeecCcceeecceeE
Q psy9164 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVI 351 (380)
Q Consensus 294 ~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~ 351 (380)
+.++||++|+||.++.+.+++.||+++.||+++.+..| ..|+++..+.|.|.+
T Consensus 159 g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g-----~~v~~~~~~~G~PA~ 211 (695)
T TIGR02353 159 GPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGG-----QSIPDGERWHGSPAQ 211 (695)
T ss_pred cCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCC-----cccCCCCEEEeeCCE
Confidence 45567777777777666666666666666666555322 345555566666554
No 215
>KOG1322|consensus
Probab=98.30 E-value=1.1e-06 Score=76.64 Aligned_cols=106 Identities=31% Similarity=0.422 Sum_probs=77.1
Q ss_pred CcEECCCCEEcCCcEEe-ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEE
Q psy9164 238 NVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVL 316 (380)
Q Consensus 238 ~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~i 316 (380)
++.+.+-..+|++|.|+ |++||.+|+|++++.+.+|.+..+..++..+.+ ..++.|.++.||.++.|.+.++|
T Consensus 264 nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i------~s~ivg~~~~IG~~~~id~~a~l 337 (371)
T KOG1322|consen 264 NVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEI------SSSIVGWNVPIGIWARIDKNAVL 337 (371)
T ss_pred cEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHH------HhhhccccccccCceEEecccEe
Confidence 33333334444444454 356688888899999999999999999999998 77888999999999888777777
Q ss_pred CCCeEECcceEEcCCeeecceeecCcceeecceeEecCceEEeceeeeccccccCCCCCCCcc
Q psy9164 317 GEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQII 379 (380)
Q Consensus 317 g~~~~ig~~~~i~~~~v~~~~~i~~~~~~~~~~v~i~~~~~i~~~~v~p~~~v~~~vp~~~iv 379 (380)
|++|. |.+.-.+-++.++|+++....+|.+++|
T Consensus 338 G~nV~------------------------------V~d~~~vn~g~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 338 GKNVI------------------------------VADEDYVNEGSGLPIKSGITVVLKPAII 370 (371)
T ss_pred ccceE------------------------------EecccccccceeEEeccceeeccccccc
Confidence 77777 4444455455666777777777766665
No 216
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=98.27 E-value=1.1e-05 Score=69.51 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
||+|+++.+.++ ++++++|++++.. +.+.+++... ..+.+..... +..++++.+...+. ..+.++++.||
T Consensus 29 ll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~sl~~~l~~~~-~~d~vlv~~~D 100 (217)
T TIGR00453 29 LLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----AVPKIVAGGD--TRQDSVRNGLKALK-DAEWVLVHDAA 100 (217)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----CcEEEeCCCc--hHHHHHHHHHHhCC-CCCEEEEccCc
Confidence 689999999998 8999999998764 5555555321 1122332211 23477888887771 14568999999
Q ss_pred c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164 79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI- 155 (380)
Q Consensus 79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~- 155 (380)
. +....++.+++.+++.+ ++++..+..+ ++..++++|.+..+.++. ....+.+ .|.|+...+..+..
T Consensus 101 ~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~v~~~~~~g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~ 170 (217)
T TIGR00453 101 RPFVPKELLDRLLEALRKAG--AAILALPVAD----TLKRVEADGFIVETVDRE---GLWAAQT-PQAFRTELLKKALAR 170 (217)
T ss_pred cCCCCHHHHHHHHHHHhhCC--cEEEeEeccc----eEEEEcCCCceeecCChH---HeEEEeC-CCcccHHHHHHHHHH
Confidence 8 55566899999876643 3344443332 344556667777777642 1233344 68899988865422
Q ss_pred --CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHH
Q psy9164 156 --KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 156 --~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
.......|....+.+.+ ++.....+....+++++.|+..+.
T Consensus 171 ~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae 214 (217)
T TIGR00453 171 AKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAE 214 (217)
T ss_pred HHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHH
Confidence 11111133344444444 566666666678999999987663
No 217
>KOG4042|consensus
Probab=98.27 E-value=1.7e-06 Score=66.22 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=55.4
Q ss_pred ccccceeeCCCCEECCCcEEC---CCcEECCCCEEcCCcEEec--------------eEEccCCEECCCcEecCeEEcCC
Q psy9164 216 GIVGNVLVDPTATIGPGCRIG---PNVTIGPGVVIEGGVCIKR--------------STILRDAIVKSHSWLEGCIIGWK 278 (380)
Q Consensus 216 ~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~ig~~ 278 (380)
.|.+.+.|+++++++|.+++. ...+||+|+.|++.+.|.+ -+||..-.+.-+|...-..+|++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 455666666666666666553 3557888888877776643 34566555555555556677777
Q ss_pred CEECCceEEeeeeEecceEECccceeCcceEEcc
Q psy9164 279 CVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN 312 (380)
Q Consensus 279 ~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~ 312 (380)
..|+..|+++ .++.+.++|.+|+.|.+-.
T Consensus 102 NVieskayvg-----~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 102 NVIESKAYVG-----DGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred ceEeeeeEec-----CCcEEcCCceeccceEEec
Confidence 7777776662 2444444454554444433
No 218
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.25 E-value=6.7e-06 Score=67.05 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i 80 (380)
||+|+++.+.++++++|+|++++ +++.+++.. .++++..... ...|.+.+++.+...+. ..+.|++++||+.
T Consensus 26 li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~~~-~~~G~~~sl~~a~~~~~-~~~~vlv~~~D~p 97 (160)
T PF12804_consen 26 LIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVDPE-PGQGPLASLLAALSQLP-SSEPVLVLPCDQP 97 (160)
T ss_dssp HHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE-ST-SSCSHHHHHHHHHHTST-TSSEEEEEETTET
T ss_pred HHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEecc-ccCChHHHHHHHHHhcc-cCCCcEEEeCCcc
Confidence 68999999999999999999998 566666644 3556644333 35899999999999882 3788999999993
Q ss_pred --cCCChHHHHHHHHhcCCcEEEE
Q psy9164 81 --CDFPFKDLVSFHKNHGKEGTIV 102 (380)
Q Consensus 81 --~~~~l~~~l~~h~~~~~~~tl~ 102 (380)
....++++++.+.+.+.+..+.
T Consensus 98 ~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 98 FLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp TS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred ccCHHHHHHHHHHHhccCCcEEEE
Confidence 3455899999888776655543
No 219
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=98.24 E-value=2.3e-05 Score=65.73 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+.++++++++|++++..+++.+.+.. ..++++... .....|++.+++.+.... ...+.++++.||.
T Consensus 27 ll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~-~~~~~g~~~si~~~l~~~-~~~~~vlv~~~D~P 101 (188)
T TIGR03310 27 ILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHN-PQYAEGQSSSIKLGLELP-VQSDGYLFLLGDQP 101 (188)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEEC-cChhcCHHHHHHHHhcCC-CCCCEEEEEeCCcC
Confidence 6899999999999999999999887666555532 224444322 223458888998888732 2256799999998
Q ss_pred -ccCCChHHHHHHHHhcCCc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKE 98 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~ 98 (380)
+....++.+++.+.+....
T Consensus 102 ~i~~~~i~~l~~~~~~~~~~ 121 (188)
T TIGR03310 102 FVTPDIIQLLLEAFALKNDE 121 (188)
T ss_pred CCCHHHHHHHHHHHHhCCCc
Confidence 4455688888887665543
No 220
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.17 E-value=1.5e-05 Score=65.93 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=59.7
Q ss_pred ceEEccCCEECCCcEecCeEEcCCCEECCceEEeeeeEecceEECccceeCcceEEccceEECCCeEECcceEEcCC
Q psy9164 255 RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331 (380)
Q Consensus 255 ~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 331 (380)
+.+.-..+.||+++.+...++++...+|+++.| .+.+++.++.|+.||.+..++..+.+..||+.+.|.+-
T Consensus 16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i------~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk 86 (277)
T COG4801 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRI------YGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK 86 (277)
T ss_pred eEEEeccEEEcccceeeeeeeeeeEEeccCcEE------eeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee
Confidence 445556677788888888899999999999999 67788899999999999988999999999999888643
No 221
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=0.00033 Score=58.30 Aligned_cols=192 Identities=17% Similarity=0.288 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCc-EEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEP-FFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~-~lv~~gD~ 79 (380)
||.|+.++..++|..+++|.+. .+.+.+++.+ +|.+...-......|| +.+..+...+...+++ ++=+.||.
T Consensus 30 mI~rV~e~a~~s~~~rvvVATD--de~I~~av~~----~G~~avmT~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDe 102 (247)
T COG1212 30 MIVRVAERALKSGADRVVVATD--DERIAEAVQA----FGGEAVMTSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDE 102 (247)
T ss_pred HHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH----hCCEEEecCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCC
Confidence 7899999999999999999865 5667777765 3556655555566676 6677776666322333 33346998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCC-----CceeEEEECCCCceeEEEeCCCCCC-------CCeEEEEEEEe
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEP-----SKYGVVLYNEHGCIESFIEKPQEFV-------SNKINAGMYIF 145 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~-----~~~g~v~~d~~~~v~~~~ek~~~~~-------~~~~~~giyi~ 145 (380)
+-...++++++..++.++++.-+..+..++ ..--.+..|.+|+-+.|...|-.+. .-+--.|+|-|
T Consensus 103 P~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYay 182 (247)
T COG1212 103 PFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAY 182 (247)
T ss_pred CCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCcchhheeehHHh
Confidence 344447888888887777665555544322 1122355678889999987654222 23456899999
Q ss_pred CHhHHhhccC-CCCCccc-chhhhh---hcCCcEEEEEeccEE-EecCChhhHHHHHHHH
Q psy9164 146 NPSVLDRIEI-KPTSIEK-EIFPLM---SKEKQLYAMELKGFW-MDVGQPRDFLKGMCLY 199 (380)
Q Consensus 146 ~~~~l~~l~~-~~~~~~~-~il~~l---~~~~~i~~~~~~~~~-~~i~~~~~~~~a~~~~ 199 (380)
++++++.+-. .+..++. +-|.+| -...++......... ..++|++|+-++...+
T Consensus 183 r~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~ 242 (247)
T COG1212 183 RAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL 242 (247)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence 9999987743 3333332 234333 333477777766554 8899999987775443
No 222
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=98.11 E-value=2e-05 Score=65.61 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|++++|..+++++++++++++.+.++.++.+. ... +. .....|...++..+.+.+. ..++|+++.||+
T Consensus 29 lI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~--~~-~~~g~G~~~~l~~al~~~~-~~~~~lv~~~D~P 100 (183)
T TIGR00454 29 LIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKD--YK-NASGKGYIEDLNECIGELY-FSEPFLVVSSDLI 100 (183)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcE--EE-ecCCCCHHHHHHHHhhccc-CCCCEEEEeCCcC
Confidence 68999999999999999999999888999998652 111 22 2344455567777777542 267899999998
Q ss_pred -ccCCChHHHHHHHHhcCCcEE
Q psy9164 80 -ICDFPFKDLVSFHKNHGKEGT 100 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~~t 100 (380)
+....+..+++.+...+....
T Consensus 101 ~i~~~~i~~li~~~~~~~~~~~ 122 (183)
T TIGR00454 101 NLRSKIIDSIVDYYYCIKAPAL 122 (183)
T ss_pred cCCHHHHHHHHHHHHhcCCCce
Confidence 557778999998876554433
No 223
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=98.05 E-value=0.00012 Score=63.31 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
||+|+++++..++ +++++|++++.. +.+.+.+.. .. ..+.+... ..+.+++++.+.+.+.+ .+.++++.||
T Consensus 33 li~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~~~sv~~~l~~~~~-~d~vlv~~~D 105 (227)
T PRK00155 33 ILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVVAG--GAERQDSVLNGLQALPD-DDWVLVHDAA 105 (227)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEeCC--cchHHHHHHHHHHhCCC-CCEEEEccCc
Confidence 6899999999875 899999998765 455443322 11 12223322 12457889998888732 4567888999
Q ss_pred c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164 79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK 156 (380)
Q Consensus 79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~ 156 (380)
. +....++++++.+++.+ ..++..+..++ +. ..+++|.+..+.+.. ....+. +.|.|+.+.+..+...
T Consensus 106 ~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~--~v~~~g~~~~~~~r~---~~~~~~-~p~~f~~~~l~~~~~~ 175 (227)
T PRK00155 106 RPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IK--RSDDGGGIVDTPDRS---GLWAAQ-TPQGFRIELLREALAR 175 (227)
T ss_pred cCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EE--EEcCCCceeecCChH---Hheeee-CCccchHHHHHHHHHH
Confidence 7 55666899999887654 33334444332 22 224456665554321 112223 3889998887655321
Q ss_pred C---CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164 157 P---TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 157 ~---~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~ 199 (380)
. .....+....+.+.+ ++.....+..+.+++++.|+..+...+
T Consensus 176 ~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~ 222 (227)
T PRK00155 176 ALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAIL 222 (227)
T ss_pred HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHH
Confidence 1 111122233333333 566666666678999999997775443
No 224
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=98.04 E-value=0.00019 Score=66.54 Aligned_cols=174 Identities=11% Similarity=0.076 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+++.|.+++ +++|+|++++......+.+... .. .+.+.. ...+..++++.+.+.+. .+.+++..||.
T Consensus 35 ll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~---~~-~v~~v~--gG~~r~~SV~~gL~~l~--~d~VLVhdadr 106 (378)
T PRK09382 35 LWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE---IK-FVTLVT--GGATRQESVRNALEALD--SEYVLIHDAAR 106 (378)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc---CC-eEEEeC--CCchHHHHHHHHHHhcC--CCeEEEeeccc
Confidence 5899999999998 7999999987655444433221 11 122322 22335678999988884 34578888886
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP 157 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~ 157 (380)
+....+..+++..++. ..++...++.++.+|+...+|.+ ++.. .++|..+.... .++... ..
T Consensus 107 Pfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR~-~l~~-~QTPQ~f~~~~-----------l~~a~~-~~ 170 (378)
T PRK09382 107 PFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDRE-GLKL-IQTPQLSRTKT-----------LKAAAD-GR 170 (378)
T ss_pred cCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCcc-cEEE-EECCCCCCHHH-----------HHHHHh-CC
Confidence 4445578888876544 46777788888888875555433 4433 37776543322 111111 11
Q ss_pred CCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHHH
Q psy9164 158 TSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 158 ~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~~ 199 (380)
..+ .|-.+.+...+ ++....-+..|.++.+|+|+..+...+
T Consensus 171 ~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 171 GDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred CCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 222 34455555555 778888888999999999998775543
No 225
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.02 E-value=6.2e-05 Score=64.76 Aligned_cols=179 Identities=12% Similarity=0.144 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD 78 (380)
||+|+++++..++ +++++|++++........+.... ....+.+.... .+...+++.+.+.+.. ..+.++++.||
T Consensus 30 ll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D 105 (218)
T cd02516 30 VLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYG--LSKVVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAA 105 (218)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcc--cCCCeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCc
Confidence 6899999999987 99999999887655544432111 11223333322 2446789999888731 24557888999
Q ss_pred c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCC
Q psy9164 79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK 156 (380)
Q Consensus 79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~ 156 (380)
. +....++++++.+++.++ .+...+..+. ....|++|.+..+.+.. ....+.+. ++|+.+.+..+...
T Consensus 106 ~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~~----~~~~~~~g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~ 175 (218)
T cd02516 106 RPFVSPELIDRLIDALKEYGA--AIPAVPVTDT----IKRVDDDGVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQ 175 (218)
T ss_pred CCCCCHHHHHHHHHHHhhCCc--EEEEEecccc----EEEecCCCceeecCChH---HhhhhcCC-CcccHHHHHHHHHH
Confidence 7 555668999998866543 2333333222 23356778888887642 23445666 88998888665221
Q ss_pred ---CCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHH
Q psy9164 157 ---PTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFL 193 (380)
Q Consensus 157 ---~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~ 193 (380)
......|....+.+.+ ++........-.++++|.++.
T Consensus 176 ~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~ 216 (218)
T cd02516 176 ASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLA 216 (218)
T ss_pred HHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHh
Confidence 1111223344444433 565555555556999999874
No 226
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.00 E-value=0.00075 Score=58.10 Aligned_cols=176 Identities=18% Similarity=0.230 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEee----cCCCCCCchHHHHhHHhhCC--CCCcEE
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSH----ENEPLGTAGPLALAKDILNK--SQEPFF 73 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~----~~~~~gt~~al~~a~~~i~~--~~~~~l 73 (380)
||+|+++.+.+++ +++|+|.+. .+++.+...+ .+.++.+.. .....++.++++++.+.+.. ..+.++
T Consensus 26 Li~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~----~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~ 99 (222)
T TIGR03584 26 MIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS----YGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHAC 99 (222)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH----cCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEE
Confidence 6899999999987 577766443 4556665543 345544321 23456778899999887732 134588
Q ss_pred EEeCCc--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCC-----CCC-CCCeEEEEEEEe
Q psy9164 74 VLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKP-----QEF-VSNKINAGMYIF 145 (380)
Q Consensus 74 v~~gD~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~-----~~~-~~~~~~~giyi~ 145 (380)
++.+|. +...++..+++.+.+.+++..+.+.+.+.+..+.. ..+++|++..+.... .+. ..-..+..+|++
T Consensus 100 ~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~ 178 (222)
T TIGR03584 100 CIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWG 178 (222)
T ss_pred EecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCCCcEEecCCCcccCCCCCCchheeeCCeEEEE
Confidence 899998 45567999999988876777777766544333332 334566665554221 111 123458999999
Q ss_pred CHhHHhhccCCCCCcccchhhhhhcCCcEEEEEecc-EEEecCChhhHHHHH
Q psy9164 146 NPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG-FWMDVGQPRDFLKGM 196 (380)
Q Consensus 146 ~~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~a~ 196 (380)
+++.+..-. . ++ .++...+..+. ...||+++.||..+.
T Consensus 179 ~~~~~~~~~--~------~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae 217 (222)
T TIGR03584 179 KSQAWLESG--P------IF-----SPHSIPIVLPRHLVQDIDTLEDWERAE 217 (222)
T ss_pred EHHHHHhcC--C------cc-----CCCcEEEEeCccceeCCCCHHHHHHHH
Confidence 999774321 0 00 34566666654 489999999987663
No 227
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.87 E-value=9.9e-05 Score=61.61 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+..+++++++|++++..+.+.+++.. .++.+.. .+....|++.+++.+.+++....+.++++.||+
T Consensus 28 li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~-~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P 102 (186)
T cd04182 28 LLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVI-NPDWEEGMSSSLAAGLEALPADADAVLILLADQP 102 (186)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEe-CCChhhCHHHHHHHHHHhccccCCEEEEEeCCCC
Confidence 6899999999999999999999877776666543 2343322 233446889999999988842246699999998
Q ss_pred -ccCCChHHHHHHHHhcCC
Q psy9164 80 -ICDFPFKDLVSFHKNHGK 97 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~ 97 (380)
+....++.+++.+.+...
T Consensus 103 ~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 103 LVTAETLRALIDAFREDGA 121 (186)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 445557888887765443
No 228
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.85 E-value=2.6e-05 Score=45.89 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=15.7
Q ss_pred EECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 297 IIGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 297 ~ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
.||++++|++++.+.+++.||+++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444555555554555555555555554444
No 229
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.80 E-value=4e-05 Score=44.12 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=10.9
Q ss_pred ECccceeCcceEEccceEECCCeEECcceEE
Q psy9164 298 IGWKCVVGQWVRMENITVLGEDVIVQDELYV 328 (380)
Q Consensus 298 ig~~~~ig~~~~i~~~~~ig~~~~ig~~~~i 328 (380)
||++|+||+++.+ ++.||+++.|+++++|
T Consensus 4 IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 4444444444444 2444444444444443
No 230
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.79 E-value=0.0014 Score=52.48 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||.|+++.|.+ .+.++++.++.+...+++|+.+ .++++ ...+ ..|-..-++.+.+.+ ..+||++++|+
T Consensus 29 LI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~----~gv~v--i~tp-G~GYv~Dl~~al~~l---~~P~lvvsaDLp 97 (177)
T COG2266 29 LIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES----VGVKV--IETP-GEGYVEDLRFALESL---GTPILVVSADLP 97 (177)
T ss_pred HHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh----cCceE--EEcC-CCChHHHHHHHHHhc---CCceEEEecccc
Confidence 78999999998 9999999999999999999977 23443 3322 235566788889999 55999999999
Q ss_pred ccCC-ChHHHHHHHH
Q psy9164 80 ICDF-PFKDLVSFHK 93 (380)
Q Consensus 80 i~~~-~l~~~l~~h~ 93 (380)
+.+. .+..+.+.+.
T Consensus 98 ~l~~~~i~~vi~~~~ 112 (177)
T COG2266 98 FLNPSIIDSVIDAAA 112 (177)
T ss_pred cCCHHHHHHHHHHHh
Confidence 3343 3566666554
No 231
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=97.73 E-value=0.0015 Score=53.91 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|++|+++.+.++++++++++++|.. +....... ..+.++.++.++ ..|-+.+++.+.......++-.+++.||+
T Consensus 33 lv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd~-~~Gls~Sl~ag~~a~~~~~~~v~~~lgDm 107 (199)
T COG2068 33 LVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPDY-AQGLSTSLKAGLRAADAEGDGVVLMLGDM 107 (199)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcch-hhhHhHHHHHHHHhcccCCCeEEEEeCCC
Confidence 5789999999999999999999973 33333332 234555555443 45888999999998852234689999998
Q ss_pred --ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccCCC
Q psy9164 80 --ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKP 157 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~~~ 157 (380)
+...+++.+++.++.++ . +...... |. ..+-.+|+++.|..+..-.
T Consensus 108 P~V~~~t~~rl~~~~~~~~-~--~v~p~~~-------------g~----------------rG~Pv~~~~~~~~~l~~l~ 155 (199)
T COG2068 108 PQVTPATVRRLIAAFRARG-A--AVRPVYG-------------GA----------------RGHPVLLSKDLFPALARLS 155 (199)
T ss_pred CCCCHHHHHHHHHhccccC-c--eeeeecc-------------CC----------------cCCceeechhHHHHHhhcC
Confidence 77788999998876662 1 1111000 00 0223456777776664433
Q ss_pred CCcccchhhhhhcCCcEEEEE--e-ccEEEecCChhhHHHHHHHH
Q psy9164 158 TSIEKEIFPLMSKEKQLYAME--L-KGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 158 ~~~~~~il~~l~~~~~i~~~~--~-~~~~~~i~~~~~~~~a~~~~ 199 (380)
.+ . -...++++.+..... . .+...|++||++|.++...+
T Consensus 156 GD--~-G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 156 GD--V-GARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred Cc--h-hHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 33 1 133445454433333 2 67899999999998876544
No 232
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=97.42 E-value=0.0015 Score=61.59 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCEEcCCcEEeceEEccCCEECCCcEecCeEEcCCCEECCceEEee
Q psy9164 244 GVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289 (380)
Q Consensus 244 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ig~~~~i~~ 289 (380)
.+.+.+.+.+.+|++..++.+++++.|++|.++.++.||++|.|.+
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG 318 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence 3456677788888888888888888888888888888888888844
No 233
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.35 E-value=0.002 Score=65.91 Aligned_cols=201 Identities=11% Similarity=0.158 Sum_probs=105.8
Q ss_pred cEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc--CCCCceeEEEECCC--CceeEEEeCCC--------CCCCCeE
Q psy9164 71 PFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEH--GCIESFIEKPQ--------EFVSNKI 138 (380)
Q Consensus 71 ~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~--~~~~~~g~v~~d~~--~~v~~~~ek~~--------~~~~~~~ 138 (380)
..+|..||++..++- .+... ..++++...... +-....|+...|.+ +++..+..||. +...-++
T Consensus 154 g~li~~gDv~~~f~~--~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~ 229 (974)
T PRK13412 154 HTLIASGDVYIRSEQ--PLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM 229 (974)
T ss_pred ceEEEecchhhhccc--cccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence 689999998655441 11111 223444433332 22467899888866 67888888886 1233578
Q ss_pred EEEEEEeCHhHHhhccCC------CC----Ccccchhhhhhc----------CCcEEEEEe-ccEEEecCChhhHHHHHH
Q psy9164 139 NAGMYIFNPSVLDRIEIK------PT----SIEKEIFPLMSK----------EKQLYAMEL-KGFWMDVGQPRDFLKGMC 197 (380)
Q Consensus 139 ~~giyi~~~~~l~~l~~~------~~----~~~~~il~~l~~----------~~~i~~~~~-~~~~~~i~~~~~~~~a~~ 197 (380)
|+|+|+|+..+.+.+... +. ++..|++..|-. .-++....+ ++.+.-+||..+|+....
T Consensus 230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence 999999999888665211 11 222233322211 123444444 456888999888774322
Q ss_pred HHHhhhcccCcccccCCCccccceeeCCCCEECCCcEECCCcEECCCCEEcCC-cEEeceEEccCCEECCCcEecCeEE-
Q psy9164 198 LYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGG-VCIKRSTILRDAIVKSHSWLEGCII- 275 (380)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~~~i- 275 (380)
.+....... +..+..... + +| .+.+ -|+++..++.++++ ++|.+|.|+.+..||.++.|.++..
T Consensus 310 ~~q~~~~~~-~~i~~~~~~--~----~~------~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~ 375 (974)
T PRK13412 310 AVQNLVTDQ-RRIMHRKVK--P----HP------AMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN 375 (974)
T ss_pred hHHHHhhhh-hhhhccccC--C----CC------ceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence 222211110 000111000 0 00 1111 36666666666665 3466677777777777777766542
Q ss_pred cCCCEECCceEEee
Q psy9164 276 GWKCVVGQWVRMEN 289 (380)
Q Consensus 276 g~~~~ig~~~~i~~ 289 (380)
.-+..|-+++.++.
T Consensus 376 ~~~~~vP~~~ci~~ 389 (974)
T PRK13412 376 SWNLDLPEGVCIDV 389 (974)
T ss_pred ccceecCCCcEEEE
Confidence 22355666666643
No 234
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=97.19 E-value=0.00011 Score=64.98 Aligned_cols=129 Identities=13% Similarity=0.161 Sum_probs=90.1
Q ss_pred CHHHHHHHHHH--------cCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcE
Q psy9164 1 MLLHQIEALVE--------AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPF 72 (380)
Q Consensus 1 li~~~l~~l~~--------~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~ 72 (380)
+|+|+++++.+ .++..+++...+..++++++++++....+..+.+.++..+..+++......+... -+.+
T Consensus 33 ~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~--~~~~ 110 (266)
T cd04180 33 FLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNSYVITFMQGKLPLKNDDDARDPHNKTK--CHLF 110 (266)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCCceEEEEeCCceEEeCCCCcccCCCCc--eeec
Confidence 47888888876 3577777777788899999999854123344446666667777776552222110 1345
Q ss_pred EEEeCCcccCCChHHHHHHHHhcCCc------EEEEEEEcCCCCceeEEEECCCCceeEEEeCCC
Q psy9164 73 FVLNSDIICDFPFKDLVSFHKNHGKE------GTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ 131 (380)
Q Consensus 73 lv~~gD~i~~~~l~~~l~~h~~~~~~------~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~ 131 (380)
..-+||++.......+++.|++++.. .+.++..+.+|.-+|+...++.+....+.+|+.
T Consensus 111 P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG~~~~~~~~~~~kvv~K~~ 175 (266)
T cd04180 111 PCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPKTR 175 (266)
T ss_pred cCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHHHHHHcCCCEEEEEEECCC
Confidence 66789999999999999999999876 333444555777778777767778888888865
No 235
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.12 E-value=0.012 Score=50.99 Aligned_cols=183 Identities=9% Similarity=0.141 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
||+|+++.+..++ +.+++|+++... ..+.+++.+.... ...+.+.. ...+-.++++.+...+. ..+.++++.||
T Consensus 32 ll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~--~g~~r~~sv~~gl~~~~-~~d~vli~~~d 107 (230)
T PRK13385 32 IFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK--GGTERQESVAAGLDRIG-NEDVILVHDGA 107 (230)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC--CCchHHHHHHHHHHhcc-CCCeEEEccCC
Confidence 6899999999864 899999987643 4444555432110 01222222 11122478888888874 12346777899
Q ss_pred c--ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhccC-
Q psy9164 79 I--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI- 155 (380)
Q Consensus 79 ~--i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~~- 155 (380)
. +....+.++++.+++.++. +...+..+ .+....++.+....++.. -+.--..+.|+.+.+...-.
T Consensus 108 ~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d-----ti~~~~~~~~~~~i~r~~----~~~~qtpq~f~~~~l~~~~~~ 176 (230)
T PRK13385 108 RPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD-----TVKRVKDKQVIETVDRNE----LWQGQTPQAFELKILQKAHRL 176 (230)
T ss_pred CCCCCHHHHHHHHHHHhhCCcE--EEEEeccc-----eEEEEcCCeeEeccCHHH----HhhhcCCceeeHHHHHHHHHH
Confidence 8 4445588999988766533 22233222 122223344444333211 11122367777776654311
Q ss_pred --CCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHHH
Q psy9164 156 --KPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMCL 198 (380)
Q Consensus 156 --~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~~ 198 (380)
.......+-...+.+.+ ++...+-+.....+.+|+|+..+...
T Consensus 177 ~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~ 222 (230)
T PRK13385 177 ASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAI 222 (230)
T ss_pred HHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHH
Confidence 11111223333333333 56666666678899999998877444
No 236
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.10 E-value=0.0028 Score=52.69 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+... +.+|+|++++..+. +. . .++++.. .+....|...+++.+...+. .+.++++.||+
T Consensus 28 ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~----~~~~~v~-~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~P 95 (181)
T cd02503 28 LLEHVLERLKPL-VDEVVISANRDQER---YA-L----LGVPVIP-DEPPGKGPLAGILAALRAAP--ADWVLVLACDMP 95 (181)
T ss_pred HHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h----cCCcEee-CCCCCCCCHHHHHHHHHhcC--CCeEEEEeCCcC
Confidence 689999999988 99999999887654 11 1 2344322 22356788899999998884 57799999999
Q ss_pred -ccCCChHHHHHHH
Q psy9164 80 -ICDFPFKDLVSFH 92 (380)
Q Consensus 80 -i~~~~l~~~l~~h 92 (380)
+....++.+++.+
T Consensus 96 ~i~~~~i~~l~~~~ 109 (181)
T cd02503 96 FLPPELLERLLAAA 109 (181)
T ss_pred CCCHHHHHHHHHhh
Confidence 3444577777765
No 237
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.98 E-value=0.0042 Score=52.07 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHH---HHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEe
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQM---EDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLN 76 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i---~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~ 76 (380)
||+|+++.+.+.++.+++|++++..+.+ .++... ..++.+.... ....|.+.+++.+...+.. ..+.++++.
T Consensus 28 ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~G~~~si~~gl~~~~~~~~d~vlv~~ 103 (190)
T TIGR03202 28 LGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA---DERIMLVCCR-DACEGQAHSLKCGLRKAEAMGADAVVILL 103 (190)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc---CCCeEEEECC-ChhhhHHHHHHHHHHHhccCCCCeEEEEe
Confidence 5899999888889999999998765432 222211 1234443333 3344778889988887632 245689999
Q ss_pred CCc--ccCCChHHHHHHHHhc
Q psy9164 77 SDI--ICDFPFKDLVSFHKNH 95 (380)
Q Consensus 77 gD~--i~~~~l~~~l~~h~~~ 95 (380)
||+ +....+..+++..++.
T Consensus 104 ~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 104 ADQPFLTADVINALLALAKRR 124 (190)
T ss_pred CCCCCCCHHHHHHHHHHHhhC
Confidence 999 4444477777765443
No 238
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.88 E-value=0.0077 Score=50.23 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+.. ++++|+|++.+..+. +... ..+.++.....+...|+..+++.+.+.+. .+.++++.||.
T Consensus 29 ll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~~~~~g~~~si~~al~~~~--~~~vlv~~~D~P 99 (186)
T TIGR02665 29 LIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDALADFPGPLAGILAGLRWAG--TDWVLTVPCDTP 99 (186)
T ss_pred HHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCCCCCCCCHHHHHHHHHhcC--CCeEEEEecCCC
Confidence 68999999986 599999988754432 2111 12344433323456799999999998884 56799999998
Q ss_pred ccCCC-hHHHHHHHHhcC
Q psy9164 80 ICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~~ 96 (380)
+.+.+ ++++++.+.+.+
T Consensus 100 ~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 100 FLPEDLVARLAAALEASD 117 (186)
T ss_pred cCCHHHHHHHHHHhhccC
Confidence 44444 677777655433
No 239
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.85 E-value=0.0069 Score=50.92 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+. .++++++|+++...+... . .++++.....+...|...+++.+....+ .+.++++.||.
T Consensus 32 ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~----~~~~~v~~~~~~~~g~~~~i~~~l~~~~--~~~vlv~~~D~P 100 (193)
T PRK00317 32 LIQHVIERLA-PQVDEIVINANRNLARYA----A----FGLPVIPDSLADFPGPLAGILAGLKQAR--TEWVLVVPCDTP 100 (193)
T ss_pred HHHHHHHHHh-hhCCEEEEECCCChHHHH----h----cCCcEEeCCCCCCCCCHHHHHHHHHhcC--CCeEEEEcCCcC
Confidence 6899999998 789999999876543322 1 1333322212223677888988888763 46689999999
Q ss_pred ccC-CChHHHHHHHHhc
Q psy9164 80 ICD-FPFKDLVSFHKNH 95 (380)
Q Consensus 80 i~~-~~l~~~l~~h~~~ 95 (380)
+.+ ..+..+++.+.+.
T Consensus 101 ~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 101 FIPPDLVARLAQAAGKD 117 (193)
T ss_pred CCCHHHHHHHHHhhhcC
Confidence 444 4477777765433
No 240
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.32 E-value=0.061 Score=42.27 Aligned_cols=90 Identities=19% Similarity=0.101 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
+|.++++.+.+.+ ..+++++.....+...+.+.+.... ...+......+..|.+.++..+..... .+.++++.+|
T Consensus 11 ~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~v~~~d~D 87 (156)
T cd00761 11 YLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR--GEYILFLDAD 87 (156)
T ss_pred HHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc--CCEEEEECCC
Confidence 3678899999997 7889988887766666666553211 223445556777899999988888884 5668889999
Q ss_pred cccCCCh-HHHHHHHH
Q psy9164 79 IICDFPF-KDLVSFHK 93 (380)
Q Consensus 79 ~i~~~~l-~~~l~~h~ 93 (380)
.+...++ ..++..+.
T Consensus 88 ~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 88 DLLLPDWLERLVAELL 103 (156)
T ss_pred CccCccHHHHHHHHHh
Confidence 9888774 44434433
No 241
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.11 Score=43.36 Aligned_cols=178 Identities=14% Similarity=0.168 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecC-----CCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN-----EPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-----~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
||.|+++++.+++.-+=+++ ...++.|.+.-.+ .|.++- ...+ +...|-+++.++.+.++...+..+++
T Consensus 30 Li~~~I~aA~ns~~fd~Vvi-SsDs~~Il~~A~~----ygak~~-~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lL 103 (228)
T COG1083 30 LIGYTIEAALNSKLFDKVVI-SSDSEEILEEAKK----YGAKVF-LKRPKELASDRASTIDAALHALESFNIDEDTLILL 103 (228)
T ss_pred hHHHHHHHHhcCCccceEEE-cCCcHHHHHHHHH----hCcccc-ccCChhhccCchhHHHHHHHHHHHhccccCeeEEe
Confidence 68999999999985444443 4455666555444 244442 2222 22233356677777774333336666
Q ss_pred eCC--cccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCC--CCC-----CCeEEEEEEEeC
Q psy9164 76 NSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQ--EFV-----SNKINAGMYIFN 146 (380)
Q Consensus 76 ~gD--~i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~--~~~-----~~~~~~giyi~~ 146 (380)
.+- +....++++.++.+.+.+.+..+.+.+.+...-..+ . +.+|.+..+-+.|. ..+ ....+.-+|+++
T Consensus 104 q~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f-~-~~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~ 181 (228)
T COG1083 104 QPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAF-S-LNNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINK 181 (228)
T ss_pred ccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHH-H-hcCCceeecccCCccccccccchhhhhhcCcEEEeh
Confidence 544 478888999999999988777777776654311111 1 12355655555442 111 123467899999
Q ss_pred HhHHhhccCCCCCcccchhhhhhcCCcEEEEEe-ccEEEecCChhhHHHHHHHH
Q psy9164 147 PSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL-KGFWMDVGQPRDFLKGMCLY 199 (380)
Q Consensus 147 ~~~l~~l~~~~~~~~~~il~~l~~~~~i~~~~~-~~~~~~i~~~~~~~~a~~~~ 199 (380)
++.|..-+ .-| ......|.. +....||++..|+..+....
T Consensus 182 ~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 182 KDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred HHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHHHHHHh
Confidence 99874321 000 112222333 33478999999987664443
No 242
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=96.18 E-value=0.017 Score=48.67 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+..+++.+++++++. +++.++... .++++ ..+... |...+++.+.+++....+.++++.||+
T Consensus 32 ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~--i~~~~~-G~~~si~~al~~~~~~~~~vlv~~~D~P 102 (195)
T TIGR03552 32 MLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPV--LRDPGP-GLNNALNAALAEAREPGGAVLILMADLP 102 (195)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEE--EecCCC-CHHHHHHHHHHHhhccCCeEEEEeCCCC
Confidence 68999999999988888888764 444555432 24444 333333 888999999887732224699999998
Q ss_pred -ccCCChHHHHHHHH
Q psy9164 80 -ICDFPFKDLVSFHK 93 (380)
Q Consensus 80 -i~~~~l~~~l~~h~ 93 (380)
+....++++++.++
T Consensus 103 ~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 103 LLTPRELKRLLAAAT 117 (195)
T ss_pred CCCHHHHHHHHHhcc
Confidence 55566888887654
No 243
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=96.17 E-value=0.037 Score=48.01 Aligned_cols=91 Identities=19% Similarity=0.275 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCCh--HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRA--EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
||+|+++.+..++ +++++|+++... +.+.+++.. .++++...... +.......+..... .+.++++.|
T Consensus 26 li~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~~~~~---~~l~~~~~~~~~~~--~d~vli~~~ 96 (233)
T cd02518 26 LLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFRGSEE---DVLGRYYQAAEEYN--ADVVVRITG 96 (233)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEECCch---hHHHHHHHHHHHcC--CCEEEEeCC
Confidence 6899999999998 899999998765 667776643 23444322221 11111122222221 456899999
Q ss_pred Cc--ccCCChHHHHHHHHhcCCcEE
Q psy9164 78 DI--ICDFPFKDLVSFHKNHGKEGT 100 (380)
Q Consensus 78 D~--i~~~~l~~~l~~h~~~~~~~t 100 (380)
|. +....++++++.++..+.+.+
T Consensus 97 D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 97 DCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 98 455568899998876655444
No 244
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.03 E-value=0.034 Score=51.75 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+.. .+++++|++....+.+.+++.+ +.+.....+...|...+++.+...+. .+.++++.||+
T Consensus 34 ll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~------~~~i~d~~~g~~G~~~si~~gl~~~~--~~~vlv~~~D~P 104 (366)
T PRK14489 34 LIERVVDRLRP-QFARIHLNINRDPARYQDLFPG------LPVYPDILPGFQGPLSGILAGLEHAD--SEYLFVVACDTP 104 (366)
T ss_pred HHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC------CcEEecCCCCCCChHHHHHHHHHhcC--CCcEEEeeCCcC
Confidence 68999999986 5999999777665555554322 22222222333577888999888873 45699999997
Q ss_pred -ccCCChHHHHHHHHhcCCc
Q psy9164 80 -ICDFPFKDLVSFHKNHGKE 98 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~~~~~ 98 (380)
+....+.++++.++..+++
T Consensus 105 ~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 105 FLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred CCCHHHHHHHHHHhhccCCe
Confidence 3444467777765554443
No 245
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.69 E-value=0.083 Score=44.64 Aligned_cols=83 Identities=14% Similarity=0.174 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEee-cCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSH-ENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~-~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
||+|+++.|.. .+.+++|++++ .+....... .++. +.. .....|...+++.+...+. .+.++++.||.
T Consensus 35 ll~~~i~~l~~-~~~~ivvv~~~-~~~~~~~~~-----~~~~--~i~~~~~~~G~~~si~~~l~~~~--~~~vlv~~~D~ 103 (200)
T PRK02726 35 LLQRVARIAAA-CADEVYIITPW-PERYQSLLP-----PGCH--WLREPPPSQGPLVAFAQGLPQIK--TEWVLLLACDL 103 (200)
T ss_pred HHHHHHHHHHh-hCCEEEEECCC-HHHHHhhcc-----CCCe--EecCCCCCCChHHHHHHHHHhCC--CCcEEEEeCCC
Confidence 68999999975 47899888764 333333221 1233 333 2334688899999999884 46799999999
Q ss_pred --ccCCChHHHHHHHHh
Q psy9164 80 --ICDFPFKDLVSFHKN 94 (380)
Q Consensus 80 --i~~~~l~~~l~~h~~ 94 (380)
+....+..+++.+..
T Consensus 104 P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 104 PRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 444447777776543
No 246
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.21 E-value=0.42 Score=40.17 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+... +.+++|++++ +.. .. ..++....+....|...++..+..... .+.++++.||+
T Consensus 37 ll~~~i~~l~~~-~~~vvvv~~~--~~~----~~-----~~~~v~d~~~~~~gpl~gi~~~l~~~~--~~~vlv~~~D~P 102 (196)
T PRK00560 37 LLEYQYTRLLKL-FKKVYISTKD--KKF----EF-----NAPFLLEKESDLFSPLFGIINAFLTLQ--TPEIFFISVDTP 102 (196)
T ss_pred HHHHHHHHHHHh-CCEEEEEECc--hhc----cc-----CCcEEecCCCCCCCcHHHHHHHHHhcC--CCeEEEEecCcC
Confidence 589999999887 8999998875 111 11 122211112233455555655554443 57799999999
Q ss_pred ccCCC-hHHH
Q psy9164 80 ICDFP-FKDL 88 (380)
Q Consensus 80 i~~~~-l~~~ 88 (380)
+.+.+ ++++
T Consensus 103 ~i~~~~i~~l 112 (196)
T PRK00560 103 FVSFESIKKL 112 (196)
T ss_pred cCCHHHHHHH
Confidence 44544 3444
No 247
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.78 E-value=0.26 Score=39.43 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=67.1
Q ss_pred HHHHHHHHHHc--CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEA--GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|..+|+.|.++ ...+|+|+-....+...+.+.+..+ .+..+++...++..|-+.+...+.+... .+-++++..|.
T Consensus 13 l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~--~~~i~~ld~D~ 89 (169)
T PF00535_consen 13 LERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK--GEYILFLDDDD 89 (169)
T ss_dssp HHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SSEEEEEETTE
T ss_pred HHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc--eeEEEEeCCCc
Confidence 67888888887 4567777665544444555544222 4567777777777788888888888884 45578889999
Q ss_pred ccCCC-hHHHHHHHHhcCCcEEEEE
Q psy9164 80 ICDFP-FKDLVSFHKNHGKEGTIVV 103 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~~~~~tl~~ 103 (380)
+...+ +..+++.+.+.+.++.+..
T Consensus 90 ~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 90 IISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp EE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred eEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 77777 7889998888766554443
No 248
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=93.93 E-value=0.3 Score=42.86 Aligned_cols=177 Identities=13% Similarity=0.153 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYRA-EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
||+|+++.+.+. ++++|+|++++.. +.+++.+.. ++..+.+.. ...+-.++++.+...+. .+..+|+.+|
T Consensus 54 ll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v~--gg~~r~~SV~~gl~~l~--~~~~~VlihD 125 (252)
T PLN02728 54 IALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFAL--PGKERQDSVFNGLQEVD--ANSELVCIHD 125 (252)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEcC--CCCchHHHHHHHHHhcc--CCCCEEEEec
Confidence 589999999985 8999999998764 444444433 233444432 22234577888888873 3344566777
Q ss_pred c----ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCe-EEEEEEEeCHhHHhhc
Q psy9164 79 I----ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNK-INAGMYIFNPSVLDRI 153 (380)
Q Consensus 79 ~----i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~-~~~giyi~~~~~l~~l 153 (380)
. +....+..+++...+.++ .+...+..+.-+ ..++++.+....+. +.+ .----..|+.+.+...
T Consensus 126 aarP~vs~~~i~~li~~~~~~ga--~i~~~~~~dtik----~v~~~~~v~~t~~R-----~~l~~~QTPQ~F~~~~l~~a 194 (252)
T PLN02728 126 SARPLVTSADIEKVLKDAAVHGA--AVLGVPVKATIK----EANSDSFVVKTLDR-----KRLWEMQTPQVIKPELLRRG 194 (252)
T ss_pred CcCCCCCHHHHHHHHHHHhhCCe--EEEeecchhhEE----EecCCCceeeccCh-----HHeEEEeCCccchHHHHHHH
Confidence 3 444447888887777653 344444333221 22334444322111 000 0111123344333221
Q ss_pred ----cCCCCCcccchhhhhhcCC-cEEEEEeccEEEecCChhhHHHHHH
Q psy9164 154 ----EIKPTSIEKEIFPLMSKEK-QLYAMELKGFWMDVGQPRDFLKGMC 197 (380)
Q Consensus 154 ----~~~~~~~~~~il~~l~~~~-~i~~~~~~~~~~~i~~~~~~~~a~~ 197 (380)
..+... ..|-...+...+ ++...+-+..-..+.+|+|+..+..
T Consensus 195 ~~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~ 242 (252)
T PLN02728 195 FELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAER 242 (252)
T ss_pred HHHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHH
Confidence 111111 123223333333 5666555556788999999876644
No 249
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.40 E-value=0.21 Score=47.22 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=53.0
Q ss_pred CCcEEEEeCCc-ccCCChHHHHHHHHhcCCcEEEEEEEcCC--CCceeEEEECCCC---------ceeEEEeCCCC--C-
Q psy9164 69 QEPFFVLNSDI-ICDFPFKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHG---------CIESFIEKPQE--F- 133 (380)
Q Consensus 69 ~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~tl~~~~~~~--~~~~g~v~~d~~~---------~v~~~~ek~~~--~- 133 (380)
+.-++|..+|. +...+ ...+. +.+ ..++++..+.+. ....|+...|+++ .+..|..||.. .
T Consensus 53 ppGv~V~s~D~vl~~~~-~~~~~-~~~--~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~ 128 (414)
T PF07959_consen 53 PPGVLVCSGDMVLSVPD-DPLID-WDE--PGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR 128 (414)
T ss_pred hcceEEEecccccccCc-cccCC-CCC--CCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH
Confidence 44689999994 33333 22222 222 456666665432 4678999999888 78888888751 1
Q ss_pred --------CCCeEEEEEEEeCHhHHhhc
Q psy9164 134 --------VSNKINAGMYIFNPSVLDRI 153 (380)
Q Consensus 134 --------~~~~~~~giyi~~~~~l~~l 153 (380)
..-+.++|+..|+.++.+.+
T Consensus 129 ~~~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 129 ASGAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred hCCcccCCCcccccccceeccHHHHHHH
Confidence 12356999999999887665
No 250
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=92.26 E-value=0.77 Score=38.42 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
|++|+++.|....- .+++......++ +.. .+.++. .+.....|-...++.+....+ .+.+++++||+
T Consensus 31 lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~vv-~D~~~~~GPL~Gi~~al~~~~--~~~~~v~~~D~P 98 (192)
T COG0746 31 LIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPVV-PDELPGFGPLAGILAALRHFG--TEWVLVLPCDMP 98 (192)
T ss_pred HHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCcee-ecCCCCCCCHHHHHHHHHhCC--CCeEEEEecCCC
Confidence 68999999988776 566655544332 222 233432 222222288899999999995 67899999999
Q ss_pred ccCCC-hHHHHHHHHh
Q psy9164 80 ICDFP-FKDLVSFHKN 94 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~ 94 (380)
+...+ +..+.+...+
T Consensus 99 ~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 99 FIPPELVERLLSAFKQ 114 (192)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 44444 4555554443
No 251
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=91.78 E-value=1 Score=37.07 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhh-CCCCCcEEEEeCCc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDIL-NKSQEPFFVLNSDI 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i-~~~~~~~lv~~gD~ 79 (380)
||+|+++.+. ..+.+++|+++... . +.. .++++. .......|...++..+.... ....+.++++.||+
T Consensus 17 ll~~~~~~l~-~~~~~iivv~~~~~-~----~~~----~~~~~i-~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~Dm 85 (178)
T PRK00576 17 LVEHVVGIVG-QRCAPVFVMAAPGQ-P----LPE----LPAPVL-RDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDM 85 (178)
T ss_pred HHHHHHHHHh-hcCCEEEEECCCCc-c----ccc----CCCCEe-ccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 5899999776 56899999987542 1 111 123332 22233345555555333322 11256799999999
Q ss_pred -ccC-CChHHHHHHHHhc
Q psy9164 80 -ICD-FPFKDLVSFHKNH 95 (380)
Q Consensus 80 -i~~-~~l~~~l~~h~~~ 95 (380)
+.+ ..++.+++.++..
T Consensus 86 P~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 86 PYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCCHHHHHHHHHHhhcC
Confidence 434 3367777654433
No 252
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=90.91 E-value=3.5 Score=33.64 Aligned_cols=98 Identities=9% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHHc----CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEA----GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
|..+|+.+.+. ...+|+|+-....+...+.+.+..... ..+.+...++..|-+.+...+.+... .+-++++.+
T Consensus 12 l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~-~~~~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~lD~ 88 (185)
T cd04179 12 IPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV-PRVRVIRLSRNFGKGAAVRAGFKAAR--GDIVVTMDA 88 (185)
T ss_pred HHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC-CCeEEEEccCCCCccHHHHHHHHHhc--CCEEEEEeC
Confidence 45677777777 356777776554444444443321111 23355666777788899888888873 455788899
Q ss_pred CcccCCC-hHHHHHHHHhcCCcEEEE
Q psy9164 78 DIICDFP-FKDLVSFHKNHGKEGTIV 102 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~~~~~~tl~ 102 (380)
|.....+ +.++++...+.+.++.+.
T Consensus 89 D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 89 DLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred CCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 9866655 777887655555544433
No 253
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.60 E-value=4.1 Score=32.38 Aligned_cols=92 Identities=21% Similarity=0.167 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|..+|+.+.+.. ..+++|+-....+...+.+.+........+.+....+..|-+.+...+.+... .+-++++.+|.
T Consensus 12 l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~--~~~i~~~D~D~ 89 (180)
T cd06423 12 IERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK--GDIVVVLDADT 89 (180)
T ss_pred HHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC--CCEEEEECCCC
Confidence 567788888875 45677765544444444443322222234555666777888888888888873 55578889998
Q ss_pred ccCCC-hHHHHHHHHhc
Q psy9164 80 ICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~ 95 (380)
+...+ +..++..+.+.
T Consensus 90 ~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 90 ILEPDALKRLVVPFFAD 106 (180)
T ss_pred CcChHHHHHHHHHhccC
Confidence 77666 56664555443
No 254
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=89.73 E-value=3.8 Score=34.52 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHHHHHHHHc------CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164 3 LHQIEALVEA------GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN 76 (380)
Q Consensus 3 ~~~l~~l~~~------gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~ 76 (380)
...|+.+.+. .--+++|+-....+...+.+++.....+..+.+.......|-+.++..+..... .+-++++.
T Consensus 13 ~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~--gd~i~~ld 90 (211)
T cd04188 13 PPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR--GDYILFAD 90 (211)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc--CCEEEEEe
Confidence 4455555543 234677665443333333333211112222456666667799999998888883 45567779
Q ss_pred CCcccCCC-hHHHHHHHHhcCCcEEE
Q psy9164 77 SDIICDFP-FKDLVSFHKNHGKEGTI 101 (380)
Q Consensus 77 gD~i~~~~-l~~~l~~h~~~~~~~tl 101 (380)
+|...+.+ +..+++...+.+.++.+
T Consensus 91 ~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 91 ADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred CCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 99877666 77777765555555444
No 255
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.94 E-value=5.8 Score=31.46 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|..+|+++.+.- ..+++|+.....+...+.+.+... ++.+...++..|-+.++..+.+... .+-++++..|.
T Consensus 12 l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~~--~~~i~~~D~D~ 85 (166)
T cd04186 12 LKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREAK--GDYVLLLNPDT 85 (166)
T ss_pred HHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhCC--CCEEEEECCCc
Confidence 567888888763 457777666555555555544211 4555666677888888888888883 44567778888
Q ss_pred ccCCC-hHHHHHHHHhc
Q psy9164 80 ICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~ 95 (380)
....+ +..+++.+.+.
T Consensus 86 ~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 86 VVEPGALLELLDAAEQD 102 (166)
T ss_pred EECccHHHHHHHHHHhC
Confidence 76666 67777655544
No 256
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=88.15 E-value=2.5 Score=35.99 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCC-cEEEEeCC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQE-PFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~-~~lv~~gD 78 (380)
||+|+++.+.+++ +++|+|.+. .+++.+.+.+ ++..+.....+...++......+..+..+ ++ -++.+.||
T Consensus 26 Li~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~----~g~~v~~~~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d 98 (217)
T PF02348_consen 26 LIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE----YGAKVIFRRGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGD 98 (217)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH----TTSEEEE--TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTT
T ss_pred HHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH----cCCeeEEcChhhcCCcccHHHHHHHhhhh-HHhhccccCCe
Confidence 6899999999986 688776654 5566666654 34566554444444443333344444422 22 46777889
Q ss_pred c-ccC-CChHHHHHHHHhcCCc
Q psy9164 79 I-ICD-FPFKDLVSFHKNHGKE 98 (380)
Q Consensus 79 ~-i~~-~~l~~~l~~h~~~~~~ 98 (380)
. +.+ ..+.++++.+.+...+
T Consensus 99 ~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 99 SPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp ETT--HHHHHHHHHHHHHSTTS
T ss_pred eeECCHHHHHHHHHHHhcCchh
Confidence 7 333 4478889988888764
No 257
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=88.06 E-value=8.3 Score=33.29 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
|..+|+.+.++-- -+|+|+.....+...+.+.+.......++.........|-+.++..+.+... .+-++.+.+
T Consensus 16 l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~--gd~i~~~Da 93 (241)
T cd06427 16 LPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR--GEYVVIYDA 93 (241)
T ss_pred HHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--CCEEEEEcC
Confidence 4567777776532 2566665544444444444321112345555544455677788888887763 444677799
Q ss_pred CcccCCC-hHHHHHHHHhcCCcEEEE
Q psy9164 78 DIICDFP-FKDLVSFHKNHGKEGTIV 102 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~~~~~~tl~ 102 (380)
|.....+ +.++++.+.+.+.++.++
T Consensus 94 D~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 94 EDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred CCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 9887777 678888776543444433
No 258
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=86.98 E-value=12 Score=34.12 Aligned_cols=150 Identities=18% Similarity=0.261 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHcC------------CCEEEEEcc-CChHHHHHHHccccccCCc---EEEEeecC---------------
Q psy9164 1 MLLHQIEALVEAG------------VREVILAVS-YRAEQMEDELTVETKKLGI---SLVFSHEN--------------- 49 (380)
Q Consensus 1 li~~~l~~l~~~g------------i~~i~vv~~-~~~~~i~~~l~~~~~~~~~---~i~~~~~~--------------- 49 (380)
++++.++++...+ + .+++.++ +..+++++++++ ...+|+ ++.+..|.
T Consensus 48 ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~ 125 (323)
T cd04193 48 LFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFKE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEE 125 (323)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHHh-CCcCCCCCceEEEEecCceeeEcCCCccccCC
Confidence 4678888888742 4 4557777 678999999987 345555 55544331
Q ss_pred ------CCCCCchHHHHhH------HhhCCCCCcEEEEeCCcc-cCCChHHHHHHHHhcCCcEEEEEEEcC-CCCceeEE
Q psy9164 50 ------EPLGTAGPLALAK------DILNKSQEPFFVLNSDII-CDFPFKDLVSFHKNHGKEGTIVVTQVE-EPSKYGVV 115 (380)
Q Consensus 50 ------~~~gt~~al~~a~------~~i~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~tl~~~~~~-~~~~~g~v 115 (380)
.+-|.++-..... ++.....+.+.+.+.|.+ ...---.++-.+.++++++..-+.+.. ..++-|.+
T Consensus 126 ~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l 205 (323)
T cd04193 126 KGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVV 205 (323)
T ss_pred CCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEE
Confidence 2446666544322 222223566788888873 333335667778888888887655544 44556666
Q ss_pred EECCCCc--eeEEEeCCCCCC------C----CeEEEEEEEeCHhHHhhc
Q psy9164 116 LYNEHGC--IESFIEKPQEFV------S----NKINAGMYIFNPSVLDRI 153 (380)
Q Consensus 116 ~~d~~~~--v~~~~ek~~~~~------~----~~~~~giyi~~~~~l~~l 153 (380)
.. .+|+ ++++.|-|.+.. . +.-+..+.+|+.+.++.+
T Consensus 206 ~~-~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~fsl~fl~~~ 254 (323)
T cd04193 206 VL-VDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFFSLDFLEKA 254 (323)
T ss_pred EE-ECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhheeCHHHHHHH
Confidence 54 2444 445544333111 1 112334556777766655
No 259
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=85.17 E-value=13 Score=30.72 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcC--CCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 2 LLHQIEALVEAG--VREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~g--i~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
|..+|+.+.++. -.+++|+-... .+...+.+.+...+.. +.+...+...|-+.+...+..... .+-++++.+|
T Consensus 15 l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~--gd~i~~lD~D 90 (201)
T cd04195 15 LREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT--YDWVARMDTD 90 (201)
T ss_pred HHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC--CCEEEEeCCc
Confidence 567888888764 35666554332 3444444433222222 555555566788888888877763 4456777888
Q ss_pred cccCCC-hHHHHHHHHhc
Q psy9164 79 IICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h~~~ 95 (380)
.+...+ +..+++...++
T Consensus 91 d~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 91 DISLPDRFEKQLDFIEKN 108 (201)
T ss_pred cccCcHHHHHHHHHHHhC
Confidence 876666 67777766543
No 260
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=84.29 E-value=21 Score=29.63 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||-.++..|... +.+|.|++...+ +-.+-. +.++..++. -..++.++.+.+... ++++|+.+|+
T Consensus 33 ML~dvi~Al~~~-~~~i~Vvtpde~--~~~~a~--------~~~vl~d~d---LN~Ai~aa~~~~~~p-~~v~vvmaDLP 97 (210)
T COG1920 33 MLVDVLGALAGV-LGEITVVTPDEE--VLVPAT--------KLEVLADPD---LNTAINAALDEIPLP-SEVIVVMADLP 97 (210)
T ss_pred HHHHHHHHhhhh-cCCceEEcCChH--hhhhcc--------cceeeeccc---hHHHHHHHHhhCCCC-cceEEEecccc
Confidence 566777777665 788888876321 111111 112222211 335677777877432 6699999998
Q ss_pred -ccCCChHHHHHHHHh
Q psy9164 80 -ICDFPFKDLVSFHKN 94 (380)
Q Consensus 80 -i~~~~l~~~l~~h~~ 94 (380)
+...+++.+++..+.
T Consensus 98 Ll~~~~i~~~~~~~~d 113 (210)
T COG1920 98 LLSPEHIERALSAAKD 113 (210)
T ss_pred cCCHHHHHHHHHhcCC
Confidence 667778888876444
No 261
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=84.16 E-value=6 Score=36.96 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.+.. .+.+++|+++....+ .+ .. .++++... .....|-..++..+..... .+.++++.||+
T Consensus 202 ll~~~l~~l~~-~~~~vvV~~~~~~~~--~~-~~----~~v~~i~d-~~~~~Gpl~gi~~al~~~~--~~~~lv~~~DmP 270 (369)
T PRK14490 202 QLVHTAALLRP-HCQEVFISCRAEQAE--QY-RS----FGIPLITD-SYLDIGPLGGLLSAQRHHP--DAAWLVVACDLP 270 (369)
T ss_pred HHHHHHHHHHh-hCCEEEEEeCCchhh--HH-hh----cCCcEEeC-CCCCCCcHHHHHHHHHhCC--CCcEEEEeCCcC
Confidence 68999999986 478888877654221 11 11 24444332 2223466677777766653 56799999999
Q ss_pred ccC-CChHHHHHH
Q psy9164 80 ICD-FPFKDLVSF 91 (380)
Q Consensus 80 i~~-~~l~~~l~~ 91 (380)
+.+ ..+..+++.
T Consensus 271 ~i~~~~i~~L~~~ 283 (369)
T PRK14490 271 FLDEATLQQLVEG 283 (369)
T ss_pred CCCHHHHHHHHHh
Confidence 334 335666654
No 262
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=84.14 E-value=13 Score=31.41 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcC---CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 2 LLHQIEALVEAG---VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
|..+|+.+.+.- --+|+||-....+...+.+.+.... .-.+.+.......|-+.++..+..... .+-++++.+|
T Consensus 12 l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~-~~~i~~~~~~~n~G~~~a~n~g~~~a~--gd~i~~lD~D 88 (224)
T cd06442 12 IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKE-YPRVRLIVRPGKRGLGSAYIEGFKAAR--GDVIVVMDAD 88 (224)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHh-CCceEEEecCCCCChHHHHHHHHHHcC--CCEEEEEECC
Confidence 556677777643 3466766544333333333321111 123455556677788888888888773 4456788999
Q ss_pred cccCCC-hHHHHHHHHhcCCcEE
Q psy9164 79 IICDFP-FKDLVSFHKNHGKEGT 100 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h~~~~~~~t 100 (380)
...+.+ +..+++.....+.++.
T Consensus 89 ~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 89 LSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEE
Confidence 876665 6777776555554443
No 263
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=82.59 E-value=6.4 Score=36.33 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
||+|+++.|... +.+++|+++... ..... ...+++. .......|-..+++.+..... .+.++++.||+
T Consensus 188 Ll~~~ie~l~~~-~~~ViVv~~~~~--~~~~~-----~~~v~~I-~D~~~~~GPlagI~aaL~~~~--~~~~lVl~cDmP 256 (346)
T PRK14500 188 HAQYLYDLLAKY-CEQVFLSARPSQ--WQGTP-----LENLPTL-PDRGESVGPISGILTALQSYP--GVNWLVVACDLA 256 (346)
T ss_pred HHHHHHHHHHhh-CCEEEEEeCchH--hhhcc-----ccCCeEE-eCCCCCCChHHHHHHHHHhCC--CCCEEEEECCcC
Confidence 588999888764 889988875421 11110 0122332 223345688899999888764 46789999999
Q ss_pred ccCC-ChHHHHHHH
Q psy9164 80 ICDF-PFKDLVSFH 92 (380)
Q Consensus 80 i~~~-~l~~~l~~h 92 (380)
+.+. .++.+++.+
T Consensus 257 ~l~~~~l~~L~~~~ 270 (346)
T PRK14500 257 YLNSETVEKLLAHY 270 (346)
T ss_pred CCCHHHHHHHHHhh
Confidence 4443 366777755
No 264
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=82.22 E-value=13 Score=30.34 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=47.9
Q ss_pred CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHH
Q psy9164 15 REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHK 93 (380)
Q Consensus 15 ~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 93 (380)
-+|+|+-....+...+.+++.... ..++.+.......|.+.++..+..... .+-++++.+|...+.+ +.++++. .
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~-~~~i~~i~~~~n~G~~~a~n~g~~~a~--~d~i~~~D~D~~~~~~~l~~l~~~-~ 105 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAAR-DPRVKVIRLSRNFGQQAALLAGLDHAR--GDAVITMDADLQDPPELIPEMLAK-W 105 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhh-CCCEEEEEecCCCCcHHHHHHHHHhcC--CCEEEEEeCCCCCCHHHHHHHHHH-H
Confidence 467776654433333333321111 124555555566788888888877773 4556778999877665 6777776 3
Q ss_pred hcCCcEE
Q psy9164 94 NHGKEGT 100 (380)
Q Consensus 94 ~~~~~~t 100 (380)
+.+.++.
T Consensus 106 ~~~~~~v 112 (181)
T cd04187 106 EEGYDVV 112 (181)
T ss_pred hCCCcEE
Confidence 4444433
No 265
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=81.37 E-value=19 Score=32.31 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHcc-ccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTV-ETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN 76 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~-~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~ 76 (380)
|...|+.+.+.-- .+|+||=....+...+.+.+ ........+.+...+...|-+.+.-.+..... .+-+++++
T Consensus 14 l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~--gd~i~fLD 91 (299)
T cd02510 14 LLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT--GDVLVFLD 91 (299)
T ss_pred HHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc--CCEEEEEe
Confidence 5567777776432 37877765443333332211 01112234555666667788888777777763 45578889
Q ss_pred CCcccCCC-hHHHHHHHHhcCC
Q psy9164 77 SDIICDFP-FKDLVSFHKNHGK 97 (380)
Q Consensus 77 gD~i~~~~-l~~~l~~h~~~~~ 97 (380)
+|...+.+ |.++++...+...
T Consensus 92 ~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 92 SHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CCcccCccHHHHHHHHHHhCCC
Confidence 99977666 7888887766543
No 266
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.12 E-value=22 Score=30.44 Aligned_cols=95 Identities=11% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
|..+|+.+.+... -+++|+-+...+...+.+...... ...+.+...+ ..|-+.++..+.+... .+-++++.+
T Consensus 15 l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~--~d~v~~lD~ 90 (249)
T cd02525 15 IEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSR--GDIIIRVDA 90 (249)
T ss_pred HHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhC--CCEEEEECC
Confidence 4567788877654 367776655444444444432111 2334444433 3455667777777763 455777889
Q ss_pred CcccCCC-hHHHHHHHHhcCCcEE
Q psy9164 78 DIICDFP-FKDLVSFHKNHGKEGT 100 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~~~~~~t 100 (380)
|.+.+.+ +.++++.+++.+..+.
T Consensus 91 D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 91 HAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred CccCCHHHHHHHHHHHhcCCCCEE
Confidence 9877666 7788876666554433
No 267
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=81.11 E-value=17 Score=31.46 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
|...|+.+..... -+++|+.....+...+.+.+.... .+.+...+...|-+.++..+..... .+-++++.+
T Consensus 44 l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~a~--~d~i~~lD~ 118 (251)
T cd06439 44 IEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAALNRALALAT--GEIVVFTDA 118 (251)
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHHcC--CCEEEEEcc
Confidence 3455666655432 257776655544555555442221 3445555666687888888888773 455788899
Q ss_pred CcccCCC-hHHHHHHHHhc
Q psy9164 78 DIICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~~ 95 (380)
|.+...+ ++++++...+.
T Consensus 119 D~~~~~~~l~~l~~~~~~~ 137 (251)
T cd06439 119 NALLDPDALRLLVRHFADP 137 (251)
T ss_pred ccCcCHHHHHHHHHHhcCC
Confidence 9977766 67777776433
No 268
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.10 E-value=17 Score=29.73 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCC--EEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAGVR--EVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|+.+|+.+.+.... +|+|+-....+...+.+.+.... +.+....+..|-+.+...+.+... .+-++++.+|.
T Consensus 13 l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a~--~~~v~~ld~D~ 86 (202)
T cd06433 13 LEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALAT--GDIIGFLNSDD 86 (202)
T ss_pred HHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence 56778888877655 56665444334445555442211 223334555677888888887773 44567778887
Q ss_pred ccCCC-hHHHHHHHHhc
Q psy9164 80 ICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~ 95 (380)
....+ +..+++...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 87 TLLPGALLAVVAAFAEH 103 (202)
T ss_pred ccCchHHHHHHHHHHhC
Confidence 55544 77777544443
No 269
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.27 E-value=17 Score=30.03 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCC--EEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 2 LLHQIEALVEAGVR--EVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~gi~--~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
|..+|+.+.+.-.. +|+|+-... .+...+.+.+.... ...+.+...++..|-+.++..+..... .+-++++..|
T Consensus 17 l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~ld~D 93 (202)
T cd04184 17 LREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELAT--GEFVALLDHD 93 (202)
T ss_pred HHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhc--CCEEEEECCC
Confidence 45677777775433 666664432 22333333321111 123444555566677788877777762 3446777888
Q ss_pred cccCCC-hHHHHHHH
Q psy9164 79 IICDFP-FKDLVSFH 92 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h 92 (380)
.....+ +..+++.+
T Consensus 94 ~~~~~~~l~~~~~~~ 108 (202)
T cd04184 94 DELAPHALYEVVKAL 108 (202)
T ss_pred CcCChHHHHHHHHHH
Confidence 877766 67888776
No 270
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.35 E-value=23 Score=29.47 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|...|+.+.++.. -+++|+-....+...+.+++........+.+...+...|-+.++..+..... .+-++++..|.
T Consensus 13 l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~--g~~v~~ld~Dd 90 (214)
T cd04196 13 LREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD--GDYVFFCDQDD 90 (214)
T ss_pred HHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC--CCEEEEECCCc
Confidence 5667777777643 3566654433233333333222222234555666667787777777766552 44567778887
Q ss_pred ccCCC-hHHHHHHHHh
Q psy9164 80 ICDFP-FKDLVSFHKN 94 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~ 94 (380)
+...+ +..+++...+
T Consensus 91 ~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 91 IWLPDKLERLLKAFLK 106 (214)
T ss_pred ccChhHHHHHHHHHhc
Confidence 66666 7777776333
No 271
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=79.12 E-value=10 Score=32.11 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccCC--hHHHHHHHccccccCCcEEEEeecCCCCCCc----hHHHHhHHhhCCCCCcEE
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSYR--AEQMEDELTVETKKLGISLVFSHENEPLGTA----GPLALAKDILNKSQEPFF 73 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~----~al~~a~~~i~~~~~~~l 73 (380)
||+|+|+.++.+. +.+++|.++.. .+.+.++..+. |..+. .|+. +....+.+..+ .+.++
T Consensus 30 mI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~vf-------rGs~~dVL~Rf~~a~~a~~--~~~VV 96 (241)
T COG1861 30 MIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYVF-------RGSEEDVLQRFIIAIKAYS--ADVVV 96 (241)
T ss_pred hHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeEe-------cCCHHHHHHHHHHHHHhcC--CCeEE
Confidence 7999999999986 68888888763 36677777652 33331 2444 33445555553 34556
Q ss_pred EEeCCc-ccCCC-hHHHHHHHHhcCCcE
Q psy9164 74 VLNSDI-ICDFP-FKDLVSFHKNHGKEG 99 (380)
Q Consensus 74 v~~gD~-i~~~~-l~~~l~~h~~~~~~~ 99 (380)
=+.||. +.+.+ +..+++.|.+++++-
T Consensus 97 RvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 97 RVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred EeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 679998 66655 577888998887653
No 272
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=77.51 E-value=18 Score=30.84 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCCh-H----HHHHHHccccccCCcEEEEeecCCCCCC-chHHHHhHHhhCCCCCcEE
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRA-E----QMEDELTVETKKLGISLVFSHENEPLGT-AGPLALAKDILNKSQEPFF 73 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~-~----~i~~~l~~~~~~~~~~i~~~~~~~~~gt-~~al~~a~~~i~~~~~~~l 73 (380)
|...|+.+.+... -+++|+-.... . .++++..+ .+.++.+....+..|- ++++..+.+......+-++
T Consensus 14 l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~----~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~ 89 (236)
T cd06435 14 VKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ----LGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIA 89 (236)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH----hCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 5677888887753 36666554332 2 23344322 2334545544444463 7777777776621124578
Q ss_pred EEeCCcccCCC-hHHHHHHHH
Q psy9164 74 VLNSDIICDFP-FKDLVSFHK 93 (380)
Q Consensus 74 v~~gD~i~~~~-l~~~l~~h~ 93 (380)
++..|...+.+ +..+++...
T Consensus 90 ~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 90 VIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred EEcCCCCcCHHHHHHHHHHhc
Confidence 88999877666 677777654
No 273
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.42 E-value=28 Score=28.75 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD 78 (380)
|..+|+.+.+... .+|+|+-....+...+.+.+...... +.+...++..|.+.++..+...... ..+-++++..|
T Consensus 12 l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D 89 (202)
T cd04185 12 LKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDD 89 (202)
T ss_pred HHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCC
Confidence 5667888877643 36766655444455555544222222 5556666677777776666554421 13446788999
Q ss_pred cccCCC-hHHHHHHHH
Q psy9164 79 IICDFP-FKDLVSFHK 93 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h~ 93 (380)
.+.+.+ +..+++...
T Consensus 90 ~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 90 AIPDPDALEKLLAYAD 105 (202)
T ss_pred CCcChHHHHHHHHHHh
Confidence 988777 566666554
No 274
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=75.98 E-value=17 Score=31.46 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=48.5
Q ss_pred EEEEEccCChHHHHHHHccccccC-CcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHH
Q psy9164 16 EVILAVSYRAEQMEDELTVETKKL-GISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHK 93 (380)
Q Consensus 16 ~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 93 (380)
+|+|+-....+...+.+.+..+.. ...+.+.......|-+.++..+..... .+-++++.+|...+.+ +.++++...
T Consensus 42 eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~--g~~i~~lD~D~~~~~~~l~~l~~~~~ 119 (243)
T PLN02726 42 EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS--GDFVVIMDADLSHHPKYLPSFIKKQR 119 (243)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC--CCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 666665433333333333211111 234445555566677788877777662 4456788999977665 678887766
Q ss_pred hcCCcEEE
Q psy9164 94 NHGKEGTI 101 (380)
Q Consensus 94 ~~~~~~tl 101 (380)
+.+.++..
T Consensus 120 ~~~~~~v~ 127 (243)
T PLN02726 120 ETGADIVT 127 (243)
T ss_pred hcCCcEEE
Confidence 66655544
No 275
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=75.57 E-value=27 Score=29.68 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCccc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIIC 81 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~ 81 (380)
|...|+.+.+....+|+|+.....+...+.+....... .+.+.. .+..|-+.++..+..... .+-++++.+|...
T Consensus 16 l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~--~~~v~~-~~~~g~~~a~n~g~~~a~--~d~v~~lD~D~~~ 90 (235)
T cd06434 16 FRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYG--GIFVIT-VPHPGKRRALAEGIRHVT--TDIVVLLDSDTVW 90 (235)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCC--cEEEEe-cCCCChHHHHHHHHHHhC--CCEEEEECCCcee
Confidence 56778888877666888877666555555543211222 222222 334466677766666662 4557888999987
Q ss_pred CCC-hHHHHHHHH
Q psy9164 82 DFP-FKDLVSFHK 93 (380)
Q Consensus 82 ~~~-l~~~l~~h~ 93 (380)
..+ +..+++.+.
T Consensus 91 ~~~~l~~l~~~~~ 103 (235)
T cd06434 91 PPNALPEMLKPFE 103 (235)
T ss_pred ChhHHHHHHHhcc
Confidence 777 677777665
No 276
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=73.54 E-value=45 Score=28.21 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCC----EEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCC-CchHHHHhHHhhCCCCCcEEEEe
Q psy9164 2 LLHQIEALVEAGVR----EVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLG-TAGPLALAKDILNKSQEPFFVLN 76 (380)
Q Consensus 2 i~~~l~~l~~~gi~----~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g-t~~al~~a~~~i~~~~~~~lv~~ 76 (380)
|...|+.+...... +++|+-....+...+.+.+...+. .+.+.......| -+.++..+.+... .+-++++.
T Consensus 17 l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~--~d~i~~lD 92 (234)
T cd06421 17 VRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTT--GDFVAILD 92 (234)
T ss_pred HHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCC--CCEEEEEc
Confidence 45677777776543 677766555566666665532222 233333333333 3455666666662 45567789
Q ss_pred CCcccCCC-hHHHHHHHHh
Q psy9164 77 SDIICDFP-FKDLVSFHKN 94 (380)
Q Consensus 77 gD~i~~~~-l~~~l~~h~~ 94 (380)
+|.+.+.+ +..+++...+
T Consensus 93 ~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 93 ADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred cccCcCccHHHHHHHHHhc
Confidence 99987777 6777776655
No 277
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=72.63 E-value=97 Score=30.11 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHc--------------CCCEEEEEccCChHHHHHHHccccccCCc---EEEEeec---------------
Q psy9164 1 MLLHQIEALVEA--------------GVREVILAVSYRAEQMEDELTVETKKLGI---SLVFSHE--------------- 48 (380)
Q Consensus 1 li~~~l~~l~~~--------------gi~~i~vv~~~~~~~i~~~l~~~~~~~~~---~i~~~~~--------------- 48 (380)
|++++++++... .+.-+++..++..+.+++|+.++ ..+|+ ++.+..|
T Consensus 139 L~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill 217 (482)
T PTZ00339 139 LFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIM 217 (482)
T ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhc-cccCCCcccEEEEecCCcceEecCCCCccc
Confidence 467888888775 24444554557889999999863 23332 2332221
Q ss_pred -------CCCCCCchHHHHhH------HhhCCCCCcEEEEeCCcc-cCCChHHHHHHHHhcCC-cEEEEEEEcCCCCcee
Q psy9164 49 -------NEPLGTAGPLALAK------DILNKSQEPFFVLNSDII-CDFPFKDLVSFHKNHGK-EGTIVVTQVEEPSKYG 113 (380)
Q Consensus 49 -------~~~~gt~~al~~a~------~~i~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~-~~tl~~~~~~~~~~~g 113 (380)
..+-|+++-..... ++..+..+.+.+.+.|.+ ...---.++-.+.++++ ++.-.+.+....++-|
T Consensus 218 ~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG 297 (482)
T PTZ00339 218 SSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVG 297 (482)
T ss_pred CCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCcee
Confidence 12346665544322 222223456777788874 33333455666666666 5544333544456667
Q ss_pred EEEECCCC-ceeEEEeCCCC-----------CCCCeEEEEEEEeCHhHHhhc
Q psy9164 114 VVLYNEHG-CIESFIEKPQE-----------FVSNKINAGMYIFNPSVLDRI 153 (380)
Q Consensus 114 ~v~~d~~~-~v~~~~ek~~~-----------~~~~~~~~giyi~~~~~l~~l 153 (380)
.+...+.. .++++.|-+.. ..-...++..++|+.+.++.+
T Consensus 298 ~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 298 VFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFSLDFLKKV 349 (482)
T ss_pred EEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEEHHHHHHH
Confidence 76653222 56777663211 011345788899999888754
No 278
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.68 E-value=42 Score=28.21 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHc-cccccCCcEEEEeecC--CCCCCchHHHHhHHhhCCCCCcEEE
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELT-VETKKLGISLVFSHEN--EPLGTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~-~~~~~~~~~i~~~~~~--~~~gt~~al~~a~~~i~~~~~~~lv 74 (380)
|..+|+.+.+.-- -+|+|+-....+...+.+. . ....+..+.+...+ ...|-+.++..+..... .+-+++
T Consensus 12 l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~--~d~i~~ 88 (229)
T cd04192 12 LPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFA-AAKPNFQLKILNNSRVSISGKKNALTTAIKAAK--GDWIVT 88 (229)
T ss_pred HHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHH-HhCCCcceEEeeccCcccchhHHHHHHHHHHhc--CCEEEE
Confidence 5667888776632 3566665543333333332 1 11223344444433 23455556666666552 445677
Q ss_pred EeCCcccCCC-hHHHHHHHHhcCC
Q psy9164 75 LNSDIICDFP-FKDLVSFHKNHGK 97 (380)
Q Consensus 75 ~~gD~i~~~~-l~~~l~~h~~~~~ 97 (380)
+.+|.+...+ +.++++.+.+.+.
T Consensus 89 ~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 89 TDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred ECCCcccCHHHHHHHHHHhhcCCC
Confidence 7899977766 6777776655543
No 279
>PRK11204 N-glycosyltransferase; Provisional
Probab=71.67 E-value=35 Score=32.37 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|..+++.+.+..- -+|+|+-....+...+.+++...+ ..++.+...++..|-++++..+.+... .+-++++.+|.
T Consensus 69 i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~-~~~v~~i~~~~n~Gka~aln~g~~~a~--~d~i~~lDaD~ 145 (420)
T PRK11204 69 VEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQ-IPRLRVIHLAENQGKANALNTGAAAAR--SEYLVCIDGDA 145 (420)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHh-CCcEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEECCCC
Confidence 4566777766542 366665443333333333221111 123555554556677888888877763 45578889999
Q ss_pred ccCCC-hHHHHHHHHhc
Q psy9164 80 ICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~ 95 (380)
+.+.+ +..+++.+++.
T Consensus 146 ~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 146 LLDPDAAAYMVEHFLHN 162 (420)
T ss_pred CCChhHHHHHHHHHHhC
Confidence 77777 67777776543
No 280
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=70.48 E-value=34 Score=27.57 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHHHHHHHc--CCCEEEEEccCChHHHHHHHccccccCCcEEEEeecC-CCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 2 LLHQIEALVEA--GVREVILAVSYRAEQMEDELTVETKKLGISLVFSHEN-EPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
|..+|+++.+. ..-+++|+-....+...+.+.+.......++....+. ...+-+.+...+.+... .+-++++.+|
T Consensus 12 l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--g~~i~~lD~D 89 (182)
T cd06420 12 LELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--GDYLIFIDGD 89 (182)
T ss_pred HHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc--CCEEEEEcCC
Confidence 56788888775 2346776655544444444443222223333333222 22344455556666652 4556788999
Q ss_pred cccCCC-hHHHHHHH
Q psy9164 79 IICDFP-FKDLVSFH 92 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h 92 (380)
.+...+ +.++++.+
T Consensus 90 ~~~~~~~l~~~~~~~ 104 (182)
T cd06420 90 CIPHPDFIADHIELA 104 (182)
T ss_pred cccCHHHHHHHHHHh
Confidence 877766 56666655
No 281
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=70.47 E-value=60 Score=28.69 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCC
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR--AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSD 78 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD 78 (380)
|...|+.+.+. ..+|+||=... .+.+.+.+.+ ..++.+...++-.|-+.+...+.+.... ..+-++++..|
T Consensus 10 l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D 83 (281)
T TIGR01556 10 LGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQD 83 (281)
T ss_pred HHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45566777665 35666654432 2345554443 1346667777788988888877666521 24557888999
Q ss_pred cccCCC-hHHHHHHHHhcC
Q psy9164 79 IICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 79 ~i~~~~-l~~~l~~h~~~~ 96 (380)
...+.+ +.++++...+.+
T Consensus 84 ~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 84 SRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 977666 677777665543
No 282
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=67.09 E-value=36 Score=24.81 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=2.8
Q ss_pred ecCceEE
Q psy9164 352 VQDELYV 358 (380)
Q Consensus 352 i~~~~~i 358 (380)
|.+++.+
T Consensus 89 v~~ga~i 95 (101)
T PF04519_consen 89 VEGGASI 95 (101)
T ss_pred EeCCCEE
Confidence 3444433
No 283
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=66.79 E-value=9.8 Score=39.96 Aligned_cols=40 Identities=8% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCcEEeceEEccCCEECCC-cEecCeEEcCCCEECCceEEe
Q psy9164 249 GGVCIKRSTILRDAIVKSH-SWLEGCIIGWKCVVGQWVRME 288 (380)
Q Consensus 249 ~~~~i~~~~i~~~~~i~~~-~~i~~~~ig~~~~ig~~~~i~ 288 (380)
+.+.+.|+++..++.++++ +++++|.|+.+..||++|.|.
T Consensus 330 ~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 330 PAMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT 370 (974)
T ss_pred CceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe
Confidence 3356678888888888887 447778888888888888873
No 284
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=66.77 E-value=41 Score=30.32 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCEEEEE--ccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCC-cEEEEeCCc
Q psy9164 3 LHQIEALVEAGVREVILA--VSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQE-PFFVLNSDI 79 (380)
Q Consensus 3 ~~~l~~l~~~gi~~i~vv--~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~-~~lv~~gD~ 79 (380)
...|+.|.++.-....++ -....+...+.+++.. ...+.++...+-+|-+++............. -+++++-|+
T Consensus 19 ~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~ 95 (305)
T COG1216 19 VECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---FPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDT 95 (305)
T ss_pred HHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---CCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCe
Confidence 345666666654444333 3334444444544410 2356677778888888887755555422233 489999998
Q ss_pred ccCCC-hHHHHHHHHhcCCcEEE
Q psy9164 80 ICDFP-FKDLVSFHKNHGKEGTI 101 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~~~~~tl 101 (380)
+.+.+ +.++++.+++.+..+.+
T Consensus 96 ~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 96 VVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred eeChhHHHHHHHHHHhCCCCeEe
Confidence 87777 78999988887764443
No 285
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=66.01 E-value=41 Score=28.98 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHcC-CCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEAG-VREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
||+|+|+.+.... +++|+|+++. ..+.+.++... ..+..+.++. .-..-.++++.+...+....++++++. |
T Consensus 34 ll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~~~~~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvH-D 107 (230)
T COG1211 34 LLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL---SADKRVEVVK--GGATRQESVYNGLQALSKYDSDWVLVH-D 107 (230)
T ss_pred ehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh---ccCCeEEEec--CCccHHHHHHHHHHHhhccCCCEEEEe-c
Confidence 6899999999985 7999999987 44555555521 1122343332 222334678888888742234554443 4
Q ss_pred c----ccCCChHHHHHHHHhcCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeEEEEEEEeCHhHHhhcc
Q psy9164 79 I----ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE 154 (380)
Q Consensus 79 ~----i~~~~l~~~l~~h~~~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~giyi~~~~~l~~l~ 154 (380)
. ++...+.++++...+. .+.+...+..+.- ...++++.+.+......-.. ----..|+.+.|....
T Consensus 108 aaRPf~~~~~i~~li~~~~~~--~aai~alpv~DTi----k~~~~~~~i~~t~~R~~l~~----~QTPQ~F~~~~L~~a~ 177 (230)
T COG1211 108 AARPFLTPKLIKRLIELADKY--GAAILALPVTDTL----KRVDADGNIVETVDRSGLWA----AQTPQAFRLELLKQAL 177 (230)
T ss_pred cccCCCCHHHHHHHHHhhccC--CcEEEEeeccCcE----EEecCCCCeeeccChhhhhh----hhCCccccHHHHHHHH
Confidence 4 2333366666443333 3455555555542 23345666665544311000 0001123333332221
Q ss_pred ----CCCCCcccc--hhhhhhcCCcEEEEEeccEEEecCChhhHHHHH
Q psy9164 155 ----IKPTSIEKE--IFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGM 196 (380)
Q Consensus 155 ----~~~~~~~~~--il~~l~~~~~i~~~~~~~~~~~i~~~~~~~~a~ 196 (380)
....++-.| ++.++ ..++....-..+-+.+.+|.|+..+.
T Consensus 178 ~~a~~~~~~~tDdas~~e~~--G~~v~lV~G~~~n~KiTtpeDL~~a~ 223 (230)
T COG1211 178 ARAFAEGREITDDASAIEKA--GGPVSLVEGSADNFKITTPEDLEIAE 223 (230)
T ss_pred HHHHhcCCCcCCHHHHHHHc--CCCeEEEecCcceeEecCHHHHHHHH
Confidence 111122111 12111 23566555566678899999986653
No 286
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=65.16 E-value=57 Score=29.82 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred EEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHHh
Q psy9164 16 EVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKN 94 (380)
Q Consensus 16 ~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~ 94 (380)
+|+++-....+.-.+.+.+..+..+.++.........|-+.|+..+.+... .+-++++.+|.-.+.+ +.++++..+
T Consensus 40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~--gd~vv~~DaD~q~~p~~i~~l~~~~~- 116 (325)
T PRK10714 40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT--GDLIITLDADLQNPPEEIPRLVAKAD- 116 (325)
T ss_pred EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHHHH-
Confidence 666654433233223222211122334444334455677788888877772 3446788999876654 778888764
Q ss_pred cCCcEE
Q psy9164 95 HGKEGT 100 (380)
Q Consensus 95 ~~~~~t 100 (380)
++.++.
T Consensus 117 ~~~DvV 122 (325)
T PRK10714 117 EGYDVV 122 (325)
T ss_pred hhCCEE
Confidence 345543
No 287
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=61.89 E-value=96 Score=26.28 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCC----EEEEEccCCh----HHHHHHHccccccCCcEEEEeecCCCCC-CchHHHHhHHhhCCCCCcE
Q psy9164 2 LLHQIEALVEAGVR----EVILAVSYRA----EQMEDELTVETKKLGISLVFSHENEPLG-TAGPLALAKDILNKSQEPF 72 (380)
Q Consensus 2 i~~~l~~l~~~gi~----~i~vv~~~~~----~~i~~~l~~~~~~~~~~i~~~~~~~~~g-t~~al~~a~~~i~~~~~~~ 72 (380)
|...|+.+.++... +|+|+=. .. +.+++++.+ ....+.++.+....+..| .+.++..+..... .+-+
T Consensus 16 l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~-~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~--~~~i 91 (232)
T cd06437 16 VERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEE-YAAQGVNIKHVRRADRTGYKAGALAEGMKVAK--GEYV 91 (232)
T ss_pred HHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHH-HhhcCCceEEEECCCCCCCchHHHHHHHHhCC--CCEE
Confidence 56778888775332 4544433 32 334444332 112345666565555556 3567777777663 4557
Q ss_pred EEEeCCcccCCC-hHHHHHH
Q psy9164 73 FVLNSDIICDFP-FKDLVSF 91 (380)
Q Consensus 73 lv~~gD~i~~~~-l~~~l~~ 91 (380)
+++.+|.+.+.+ |..+...
T Consensus 92 ~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 92 AIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred EEEcCCCCCChHHHHHhhhh
Confidence 888999988777 4554443
No 288
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=59.92 E-value=1.1e+02 Score=25.94 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCC-CCCcEEEEeCCcc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNK-SQEPFFVLNSDII 80 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~-~~~~~lv~~gD~i 80 (380)
|..+|+.+.+. ..+++|+=....+........ ....+.+...+...|-+.+...+.+.... ..+-++++.+|..
T Consensus 13 l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~ 87 (237)
T cd02526 13 LKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL----NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSV 87 (237)
T ss_pred HHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCC
Confidence 45667777766 556666544332222222211 12345555556667877777777666521 1356788899998
Q ss_pred cCCC-hHHHH
Q psy9164 81 CDFP-FKDLV 89 (380)
Q Consensus 81 ~~~~-l~~~l 89 (380)
.+.+ +..++
T Consensus 88 ~~~~~l~~l~ 97 (237)
T cd02526 88 PPPDMVEKLL 97 (237)
T ss_pred cCHhHHHHHH
Confidence 7766 56664
No 289
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=59.89 E-value=97 Score=29.71 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCC--C--EEEEEccCChHHHHHHHccccc-cCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164 2 LLHQIEALVEAGV--R--EVILAVSYRAEQMEDELTVETK-KLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN 76 (380)
Q Consensus 2 i~~~l~~l~~~gi--~--~i~vv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~ 76 (380)
|...|+.+.++.. . +|+|+-....+...+.+++..+ ...+.+.... ...|-+.++..+.+... .+-++++.
T Consensus 64 l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~--~~~Gka~AlN~gl~~s~--g~~v~~~D 139 (439)
T TIGR03111 64 LFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGKAKALNAAIYNSI--GKYIIHID 139 (439)
T ss_pred HHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC--CCCCHHHHHHHHHHHcc--CCEEEEEC
Confidence 4566777776643 2 4666544433433333322111 1234443332 33577788888877763 44467789
Q ss_pred CCcccCCC-hHHHHHHHHhc
Q psy9164 77 SDIICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 77 gD~i~~~~-l~~~l~~h~~~ 95 (380)
+|.+.+.+ ++.+++.+.+.
T Consensus 140 aD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 140 SDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCCCcChHHHHHHHHHHHhC
Confidence 99988777 67777776543
No 290
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=59.58 E-value=65 Score=30.89 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|..+|+.+.+..- -+|+++-....+...+.+.+...+ ..++.+....+..|-+.++..+..... .+-++++.+|.
T Consensus 90 i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~-~~~v~vv~~~~n~Gka~AlN~gl~~a~--~d~iv~lDAD~ 166 (444)
T PRK14583 90 ARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAE-DPRLRVIHLAHNQGKAIALRMGAAAAR--SEYLVCIDGDA 166 (444)
T ss_pred HHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHh-CCCEEEEEeCCCCCHHHHHHHHHHhCC--CCEEEEECCCC
Confidence 3456666665532 366666543332222222221111 112333333445566777777766652 45578889999
Q ss_pred ccCCC-hHHHHHHHHhc
Q psy9164 80 ICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~ 95 (380)
+.+.+ +..+++.+.+.
T Consensus 167 ~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 167 LLDKNAVPYLVAPLIAN 183 (444)
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 88877 66777665443
No 291
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=59.47 E-value=1.1e+02 Score=26.51 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHcCCCEEEEEccCCh---HHHHHHHccccccCCcEEEEeec---CC--CC--CCchHHHHhHHhhCCCCCcEEE
Q psy9164 5 QIEALVEAGVREVILAVSYRA---EQMEDELTVETKKLGISLVFSHE---NE--PL--GTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 5 ~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~---~~--~~--gt~~al~~a~~~i~~~~~~~lv 74 (380)
.++.|+..|+++|.|++.|.. +.+++|+.+ .|+++.-... .+ .. =+...+..+.......+-|-++
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~----~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAif 186 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPETSRPMAQYFAV----RGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALF 186 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHh----CCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEE
Confidence 577889999999999999964 677888765 3555543211 00 11 1123344333333233556777
Q ss_pred EeCCcccCCChHHHHHH
Q psy9164 75 LNSDIICDFPFKDLVSF 91 (380)
Q Consensus 75 ~~gD~i~~~~l~~~l~~ 91 (380)
+.|-.+.-.++-+-++.
T Consensus 187 isCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 187 LSCTALRAATCAQRIEQ 203 (239)
T ss_pred EeCCCchhHHHHHHHHH
Confidence 77765555554444443
No 292
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=59.38 E-value=75 Score=27.26 Aligned_cols=173 Identities=13% Similarity=0.174 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCC
Q psy9164 1 MLLHQIEALVEA-GVREVILAVSYR-AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSD 78 (380)
Q Consensus 1 li~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD 78 (380)
+|.|+|+.+.+. .+++|+|++... .+.+++.+.+ ..+.+.. .-..=.++++.+...+.... +++++. |
T Consensus 30 vl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~iv~--GG~tR~~SV~ngL~~l~~~~-d~VlIH-D 99 (221)
T PF01128_consen 30 VLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVKIVE--GGATRQESVYNGLKALAEDC-DIVLIH-D 99 (221)
T ss_dssp HHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEEEEE----SSHHHHHHHHHHCHHCTS-SEEEEE-E
T ss_pred eHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEEEec--CChhHHHHHHHHHHHHHcCC-CEEEEE-c
Confidence 588999999985 689999998864 4666666544 1233332 11122367888888874322 555553 4
Q ss_pred c----ccCCChHHHHHHHHh-cCCcEEEEEEEcCCCCceeEEEECCCCceeEEEeCCCCCCCCeE-EEEEEEeCHhHHhh
Q psy9164 79 I----ICDFPFKDLVSFHKN-HGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKI-NAGMYIFNPSVLDR 152 (380)
Q Consensus 79 ~----i~~~~l~~~l~~h~~-~~~~~tl~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~-~~giyi~~~~~l~~ 152 (380)
. +....+.++++..++ .+ ..+...+..+. ....++++.+.+..+. +.+. ----..|..+.+..
T Consensus 100 aaRPfv~~~~i~~~i~~~~~~~~--aai~~~p~~DT----ik~v~~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~ 168 (221)
T PF01128_consen 100 AARPFVSPELIDRVIEAAREGHG--AAIPALPVTDT----IKRVDDDGFVTETLDR-----SKLWAVQTPQAFRFELLLE 168 (221)
T ss_dssp TTSTT--HHHHHHHHHHHHHTCS--EEEEEEE-SSE----EEEESTTSBEEEEETG-----GGEEEEEEEEEEEHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhhcC--cEEEEEecccc----EEEEecCCcccccCCH-----HHeeeecCCCeecHHHHHH
Confidence 3 233336777877766 43 34445554443 2345557776655532 2222 12234555555533
Q ss_pred ccCC----CCCcccchhhhhhc-CCcEEEEEeccEEEecCChhhHHHH
Q psy9164 153 IEIK----PTSIEKEIFPLMSK-EKQLYAMELKGFWMDVGQPRDFLKG 195 (380)
Q Consensus 153 l~~~----~~~~~~~il~~l~~-~~~i~~~~~~~~~~~i~~~~~~~~a 195 (380)
.-+. ...+-.| -..+.. ..++...+-+..-+.+.+|+|+..+
T Consensus 169 a~~~a~~~~~~~tDd-asl~~~~g~~v~~V~G~~~N~KIT~peDl~~a 215 (221)
T PF01128_consen 169 AYEKADEEGFEFTDD-ASLVEAAGKKVAIVEGSPRNIKITTPEDLELA 215 (221)
T ss_dssp HHHTHHHHTHHHSSH-HHHHHHTTS-EEEEE--TTG----SHHHHHHH
T ss_pred HHHHHHhcCCCccCH-HHHHHHcCCCEEEEeCCCCceeECCHHHHHHH
Confidence 3111 1111111 111222 2356665555556788899997665
No 293
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=59.32 E-value=1.8e+02 Score=28.24 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEE-cCCCCceeEEEECCCC--ceeEEEeCCCC--------CCCC
Q psy9164 68 SQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQ-VEEPSKYGVVLYNEHG--CIESFIEKPQE--------FVSN 136 (380)
Q Consensus 68 ~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~-~~~~~~~g~v~~d~~~--~v~~~~ek~~~--------~~~~ 136 (380)
..+.+.+.+.|.+...-=..++..|.++++++++=+.+ .....+-|.+.. .+| +++++.+-|.+ ..-.
T Consensus 212 G~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~-~dgk~~lvEysqvp~e~~~~f~~~~kf~ 290 (469)
T PLN02474 212 GKEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLIS-YEGKVQLLEIAQVPDEHVNEFKSIEKFK 290 (469)
T ss_pred CCEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEE-ECCEEEEEEEecCCHHHHHhhcccccce
Confidence 46778888999864433356777888888887775554 333344565553 344 45666655432 1346
Q ss_pred eEEEEEEEeCHhHHhhc
Q psy9164 137 KINAGMYIFNPSVLDRI 153 (380)
Q Consensus 137 ~~~~giyi~~~~~l~~l 153 (380)
+.++..+.|+-+.++.+
T Consensus 291 ~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 291 IFNTNNLWVNLKAIKRL 307 (469)
T ss_pred eeeeeeEEEEHHHHHHH
Confidence 77999999999988765
No 294
>PRK10073 putative glycosyl transferase; Provisional
Probab=58.76 E-value=1.1e+02 Score=27.96 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCC--EEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAGVR--EVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|...|+.+.+.-.. +|+|+-....+...+.+.+...+ ...+.+..+ +..|-+.+...+.+... .+-++++.+|-
T Consensus 21 L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~-~~~i~vi~~-~n~G~~~arN~gl~~a~--g~yi~flD~DD 96 (328)
T PRK10073 21 FRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAEN-YPHVRLLHQ-ANAGVSVARNTGLAVAT--GKYVAFPDADD 96 (328)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhh-CCCEEEEEC-CCCChHHHHHHHHHhCC--CCEEEEECCCC
Confidence 56778888877543 45554432222222222221111 123444443 35576677666667663 44567778887
Q ss_pred ccCCC-hHHHHHHHHhcCCcEEE
Q psy9164 80 ICDFP-FKDLVSFHKNHGKEGTI 101 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~~~~~tl 101 (380)
....+ +..+++...+.+.++..
T Consensus 97 ~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 97 VVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred ccChhHHHHHHHHHHhCCCCEEE
Confidence 66555 67778776666555543
No 295
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=57.06 E-value=1.1e+02 Score=25.17 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHcccccc-CCcEEEEeecCCCCCCc---hHHHHhHHhhCCCCCcEEEE
Q psy9164 2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKK-LGISLVFSHENEPLGTA---GPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i~~~~~~~~~gt~---~al~~a~~~i~~~~~~~lv~ 75 (380)
|...|+.+.+.- --+++|+.....+.-.+.+.+.... ....+.+.......|.. .++..+..... .+-++++
T Consensus 16 l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~--~d~i~~~ 93 (196)
T cd02520 16 LYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR--YDILVIS 93 (196)
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC--CCEEEEE
Confidence 456777777643 2466666554333322322221111 12344444433333432 33444455442 4446777
Q ss_pred eCCcccCCC-hHHHHHHH
Q psy9164 76 NSDIICDFP-FKDLVSFH 92 (380)
Q Consensus 76 ~gD~i~~~~-l~~~l~~h 92 (380)
.+|...+.+ |..+++..
T Consensus 94 D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 94 DSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCceEChhHHHHHHHHh
Confidence 999877666 56666654
No 296
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=56.28 E-value=36 Score=24.83 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=7.5
Q ss_pred CCEECCCcEecCeEEcC
Q psy9164 261 DAIVKSHSWLEGCIIGW 277 (380)
Q Consensus 261 ~~~i~~~~~i~~~~ig~ 277 (380)
...|+.++.++..+-.+
T Consensus 36 ~v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEEcCCCEEEEEEEEe
Confidence 44455544444433333
No 297
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=56.20 E-value=1e+02 Score=24.51 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.1
Q ss_pred ecCceEE
Q psy9164 352 VQDELYV 358 (380)
Q Consensus 352 i~~~~~i 358 (380)
|.+|+++
T Consensus 110 v~~Ga~f 116 (146)
T COG1664 110 VEEGAIF 116 (146)
T ss_pred EccCCEE
Confidence 4444444
No 298
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=54.89 E-value=1.2e+02 Score=27.85 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=34.6
Q ss_pred cEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHH
Q psy9164 41 ISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHK 93 (380)
Q Consensus 41 ~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 93 (380)
..+.+...+...|-+.|+..+...-. .+-++.+.+|...+.+ +..+++..+
T Consensus 137 ~~i~vi~~~~N~G~~~A~~~Gi~~a~--gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 137 IDIRLLSLLRNKGKGGAVRIGMLASR--GKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHcc--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34566666677788888888777662 4446777999866655 566666554
No 299
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=49.54 E-value=18 Score=30.80 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc-
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI- 79 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~- 79 (380)
|+..+++.+.. +. +++++.. +.+..+-. ...+.++ ..++ ..|--.++..+..... .++++++++|+
T Consensus 33 Ml~Dvl~al~~--v~-v~vVs~d--~~v~~~a~---~~~g~~v--l~d~-~~gLN~Al~~a~~~~~--~~~vlvl~aDLP 99 (217)
T PF01983_consen 33 MLRDVLAALRA--VD-VVVVSRD--PEVAALAR---ARLGAEV--LPDP-GRGLNAALNAALAAAG--DDPVLVLPADLP 99 (217)
T ss_dssp HHHHHHHHHHH---S-EEEEES----S-TTTTT------SSEE--EE----S-HHHHHHHHHH-H----S-EEEE-S--T
T ss_pred HHHHHHHHHHh--cC-eEEeccc--hhhhhhhh---hccCCeE--ecCC-CCCHHHHHHHHHhccC--CCceEEeecCCc
Confidence 67889999987 66 6666542 22211111 1335554 3333 4466677777733333 67899999998
Q ss_pred -ccCCChHHHHHHH
Q psy9164 80 -ICDFPFKDLVSFH 92 (380)
Q Consensus 80 -i~~~~l~~~l~~h 92 (380)
+...++..+++..
T Consensus 100 ll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 100 LLTPEDLDALLAAA 113 (217)
T ss_dssp T--HHHHHHHCT-S
T ss_pred cCCHHHHHHHHhcc
Confidence 7777788888764
No 300
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=48.43 E-value=1.4e+02 Score=28.33 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCC--EEEEEccCChHHHHHHHccccccC--CcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEAGVR--EVILAVSYRAEQMEDELTVETKKL--GISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~--~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
++.+++.+.+..-. +|+++.....+...+.+.+..... .+++.+. .....|.+.++..+..... .+-++++-+
T Consensus 70 ~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~~--~d~V~~~Da 146 (439)
T COG1215 70 LEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRAK--GDVVVILDA 146 (439)
T ss_pred HHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhcC--CCEEEEEcC
Confidence 56778888887643 788877766677777776643333 2333311 2455576788888888772 334577789
Q ss_pred CcccCCC-hHHHHHHHHhcCC
Q psy9164 78 DIICDFP-FKDLVSFHKNHGK 97 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~~~~ 97 (380)
|.+...| +++++..+.+...
T Consensus 147 D~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 147 DTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred CCCCChhHHHHHHhhhcCCCe
Confidence 9988877 6888877766543
No 301
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=46.86 E-value=70 Score=22.24 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC----h----HHHHHHHccccccCCcEEEEeecCCCCCCc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR----A----EQMEDELTVETKKLGISLVFSHENEPLGTA 55 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~----~----~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~ 55 (380)
++..|+.+.+.+.+.+.|++|.- . +.++++|.+ ...+.....+...+...|..
T Consensus 15 l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~~ 75 (83)
T PF01713_consen 15 LEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYEEVLAYRDAEPEDGNS 75 (83)
T ss_dssp HHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THCCTTEEEEEE--CCCTGG
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccchhheeeecCCCCCCC
Confidence 56778888889999999999875 3 445555543 23344434444333333433
No 302
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=45.58 E-value=1.9e+02 Score=27.13 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCC---CEEEEEccCChHHHHHHHccccccC--CcEEEEeecC-CCC---CCchHHHHhHHhhCC---CC
Q psy9164 2 LLHQIEALVEAGV---REVILAVSYRAEQMEDELTVETKKL--GISLVFSHEN-EPL---GTAGPLALAKDILNK---SQ 69 (380)
Q Consensus 2 i~~~l~~l~~~gi---~~i~vv~~~~~~~i~~~l~~~~~~~--~~~i~~~~~~-~~~---gt~~al~~a~~~i~~---~~ 69 (380)
|...|+.|.++.. -+|+|+-....+...+.+++..+.. ..++++...+ ... |-+.++.++.+...+ ..
T Consensus 55 L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~g 134 (384)
T TIGR03469 55 IGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPA 134 (384)
T ss_pred HHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCC
Confidence 5677888877633 3677766543333222222211111 1134433321 122 333455555554411 12
Q ss_pred CcEEEEeCCcccCCC-hHHHHHHHHhcCCcE
Q psy9164 70 EPFFVLNSDIICDFP-FKDLVSFHKNHGKEG 99 (380)
Q Consensus 70 ~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ 99 (380)
+-++++.+|...+.+ +.++++..++.+.++
T Consensus 135 d~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 135 DYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred CEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 346777999977766 688888777665443
No 303
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.95 E-value=50 Score=30.75 Aligned_cols=90 Identities=9% Similarity=0.090 Sum_probs=52.0
Q ss_pred HHHHHHHHcC-CCEEEEEccCCh--HHHHHHHcccccc-CCcEEEEeecCC--CCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 4 HQIEALVEAG-VREVILAVSYRA--EQMEDELTVETKK-LGISLVFSHENE--PLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 4 ~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~-~~~~i~~~~~~~--~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
-++..+.+.+ +..++++++.|. +....++....-+ -+..+....... ..-|+..+....+.+.+.+-|.+++.|
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhG 100 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHG 100 (383)
T ss_pred HHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3566777776 999999998776 7887777663211 122222221122 223444455555556545778999999
Q ss_pred CcccCCChHHHHHHHHhc
Q psy9164 78 DIICDFPFKDLVSFHKNH 95 (380)
Q Consensus 78 D~i~~~~l~~~l~~h~~~ 95 (380)
|.-+ .|...+..+..+
T Consensus 101 DT~t--~lA~alaa~~~~ 116 (383)
T COG0381 101 DTNT--TLAGALAAFYLK 116 (383)
T ss_pred Ccch--HHHHHHHHHHhC
Confidence 9743 455344444443
No 304
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=43.57 E-value=2e+02 Score=24.35 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCccc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIIC 81 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~ 81 (380)
|...|+.+... ..+|+|+-....+...+.+++ .+.++.. . +..|-+.+...+.+... .+-++++.+|.+.
T Consensus 15 l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~----~~~~v~~--~-~~~g~~~~~n~~~~~a~--~d~vl~lDaD~~~ 84 (229)
T cd02511 15 IERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE----YGAKVYQ--R-WWDGFGAQRNFALELAT--NDWVLSLDADERL 84 (229)
T ss_pred HHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH----cCCEEEE--C-CCCChHHHHHHHHHhCC--CCEEEEEeCCcCc
Confidence 45667777644 258888766544444444433 2444433 2 55566677777777763 4457788999877
Q ss_pred CCCh-HHHHHHHHh
Q psy9164 82 DFPF-KDLVSFHKN 94 (380)
Q Consensus 82 ~~~l-~~~l~~h~~ 94 (380)
..++ ..+.+...+
T Consensus 85 ~~~~~~~l~~~~~~ 98 (229)
T cd02511 85 TPELADEILALLAT 98 (229)
T ss_pred CHHHHHHHHHHHhC
Confidence 7774 444444433
No 305
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=41.69 E-value=43 Score=28.30 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHHHHHc--CCCEEEEEccCCh----HHHHHHHccccccCCcEEEEeecCCCCC---CchHHHHhHHhhCCCCCcE
Q psy9164 2 LLHQIEALVEA--GVREVILAVSYRA----EQMEDELTVETKKLGISLVFSHENEPLG---TAGPLALAKDILNKSQEPF 72 (380)
Q Consensus 2 i~~~l~~l~~~--gi~~i~vv~~~~~----~~i~~~l~~~~~~~~~~i~~~~~~~~~g---t~~al~~a~~~i~~~~~~~ 72 (380)
|...|+.+.++ .--+|+|+..... +.+++..... . +..+.+.......| .+.++..+..... .+-+
T Consensus 16 l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-~--~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~--~d~i 90 (228)
T PF13641_consen 16 LRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-P--RVRVRVIRRPRNPGPGGKARALNEALAAAR--GDYI 90 (228)
T ss_dssp HHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-G--G-GEEEEE----HHHHHHHHHHHHHHHH-----SEE
T ss_pred HHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-C--CCceEEeecCCCCCcchHHHHHHHHHHhcC--CCEE
Confidence 34556666653 2345666664332 2233333321 1 23345554444233 4566777777773 5557
Q ss_pred EEEeCCcccCCC-hHHHHHHHHhcC
Q psy9164 73 FVLNSDIICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 73 lv~~gD~i~~~~-l~~~l~~h~~~~ 96 (380)
+++..|.+.+.+ |..+++.+...+
T Consensus 91 ~~lD~D~~~~p~~l~~~~~~~~~~~ 115 (228)
T PF13641_consen 91 LFLDDDTVLDPDWLERLLAAFADPG 115 (228)
T ss_dssp EEE-SSEEE-CHHHHHHHHHHHBSS
T ss_pred EEECCCcEECHHHHHHHHHHHHhCC
Confidence 888999987766 677777774443
No 306
>PRK10018 putative glycosyl transferase; Provisional
Probab=40.92 E-value=2.6e+02 Score=24.86 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCC--EEEEEccCC--hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeC
Q psy9164 2 LLHQIEALVEAGVR--EVILAVSYR--AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi~--~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~g 77 (380)
|...|+.+.+.-.. +++|+-... .+.++++..+. .+..+.+...+...|-+.+...+..... .+-++++.+
T Consensus 20 l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~---~~~ri~~i~~~~n~G~~~a~N~gi~~a~--g~~I~~lDa 94 (279)
T PRK10018 20 AIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL---NDPRITYIHNDINSGACAVRNQAIMLAQ--GEYITGIDD 94 (279)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHHcC--CCEEEEECC
Confidence 45677777766544 555553322 24455555431 1335677777777788888777777773 445677788
Q ss_pred CcccCCC-hHHHHHHHHh
Q psy9164 78 DIICDFP-FKDLVSFHKN 94 (380)
Q Consensus 78 D~i~~~~-l~~~l~~h~~ 94 (380)
|-....+ +..+++...+
T Consensus 95 DD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 95 DDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCCCCccHHHHHHHHHHh
Confidence 8876666 6777776544
No 307
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.46 E-value=1.4e+02 Score=25.30 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCEEEEEccCC---hHHHHHHHccccccCCcEEEEee-----cC---CCCCCchHHHHhHHhhCCCCCcEE
Q psy9164 5 QIEALVEAGVREVILAVSYR---AEQMEDELTVETKKLGISLVFSH-----EN---EPLGTAGPLALAKDILNKSQEPFF 73 (380)
Q Consensus 5 ~l~~l~~~gi~~i~vv~~~~---~~~i~~~l~~~~~~~~~~i~~~~-----~~---~~~gt~~al~~a~~~i~~~~~~~l 73 (380)
+++.|...|++++.|++.|- .+..++|++++ |.++.-.. +. ....-......|++.. ..+-|-+
T Consensus 109 vv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~----Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~-~~~~Dai 183 (238)
T COG3473 109 VVEALNALGAQRISVLTPYIDEVNQREIEFLEAN----GFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF-TPDADAI 183 (238)
T ss_pred HHHHHHhhCcceEEEeccchhhhhhHHHHHHHhC----CeEEEEeeccCCcccchhcccChHHHHHHHHHhc-CCCCCeE
Confidence 57889999999999999995 36777888763 44443211 11 1112223455666666 4456777
Q ss_pred EEeCCcccCCChHHHHH
Q psy9164 74 VLNSDIICDFPFKDLVS 90 (380)
Q Consensus 74 v~~gD~i~~~~l~~~l~ 90 (380)
++.|-.+-.+..-+.++
T Consensus 184 FiSCTnlRt~eii~~lE 200 (238)
T COG3473 184 FISCTNLRTFEIIEKLE 200 (238)
T ss_pred EEEeeccccHHHHHHHH
Confidence 77776655554444444
No 308
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.88 E-value=2.2e+02 Score=23.62 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcC--CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc
Q psy9164 2 LLHQIEALVEAG--VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI 79 (380)
Q Consensus 2 i~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~ 79 (380)
|...|+.+.+.- .-+|+|+-....+...+.+.+ ..+.+... ..|-+.+...+..... .+-++++..|.
T Consensus 14 l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~~--~~g~~~a~n~g~~~a~--~~~i~~~D~D~ 83 (221)
T cd02522 14 LPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVISS--PKGRARQMNAGAAAAR--GDWLLFLHADT 83 (221)
T ss_pred HHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEeC--CcCHHHHHHHHHHhcc--CCEEEEEcCCC
Confidence 456677776653 345666644444444455443 12333332 2355666666666663 45578889998
Q ss_pred ccCCC-hHHHHHHHHhcC
Q psy9164 80 ICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 80 i~~~~-l~~~l~~h~~~~ 96 (380)
....+ +.+++....+.+
T Consensus 84 ~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 84 RLPPDWDAAIIETLRADG 101 (221)
T ss_pred CCChhHHHHHHHHhhcCC
Confidence 77666 566655554443
No 309
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=39.39 E-value=2.5e+02 Score=26.08 Aligned_cols=90 Identities=9% Similarity=0.085 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCC--CEEEEEccCChH---H-HHHHHccccccCCcEEEEeecCCCCCCch---HHHHhHHhhCCCCCcE
Q psy9164 2 LLHQIEALVEAGV--REVILAVSYRAE---Q-MEDELTVETKKLGISLVFSHENEPLGTAG---PLALAKDILNKSQEPF 72 (380)
Q Consensus 2 i~~~l~~l~~~gi--~~i~vv~~~~~~---~-i~~~l~~~~~~~~~~i~~~~~~~~~gt~~---al~~a~~~i~~~~~~~ 72 (380)
|...|+.+.++.- -+|+++.....+ + ++++..+ ..+.++++...++..|... ++..+.+... .+-+
T Consensus 56 l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~---~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~--ge~i 130 (373)
T TIGR03472 56 LYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRAD---FPDADIDLVIDARRHGPNRKVSNLINMLPHAR--HDIL 130 (373)
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHh---CCCCceEEEECCCCCCCChHHHHHHHHHHhcc--CCEE
Confidence 4556777766542 366665443222 2 2232222 1234455555444445433 3433333331 4456
Q ss_pred EEEeCCcccCCC-hHHHHHHHHhcC
Q psy9164 73 FVLNSDIICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 73 lv~~gD~i~~~~-l~~~l~~h~~~~ 96 (380)
+++.+|.....+ +++++...++.+
T Consensus 131 ~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 131 VIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred EEECCCCCcChhHHHHHHHHhcCCC
Confidence 778999987777 677776654433
No 310
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=39.21 E-value=1.3e+02 Score=25.73 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=33.9
Q ss_pred cccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCChHHHHHH
Q psy9164 36 TKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSF 91 (380)
Q Consensus 36 ~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~ 91 (380)
|+.....+.+..-....|+...+..|...+.+..-|++++.|=-++. .-+++++.
T Consensus 145 W~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~-~~r~~~~~ 199 (221)
T PF07302_consen 145 WQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQ-EMRDIVQR 199 (221)
T ss_pred HHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCH-HHHHHHHH
Confidence 33344455555555555888888888777755577899998754443 23444443
No 311
>KOG2978|consensus
Probab=38.25 E-value=2.4e+02 Score=23.59 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=58.0
Q ss_pred HHHHHHcCCCEEEEEccCC----hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcE-EEEeCCcc
Q psy9164 6 IEALVEAGVREVILAVSYR----AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPF-FVLNSDII 80 (380)
Q Consensus 6 l~~l~~~gi~~i~vv~~~~----~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~-lv~~gD~i 80 (380)
...+...|.+.=+|++... ..++.+.+++ ...+-++........+|-+.|..++..+. +.+| +++.+|+=
T Consensus 26 ~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k--~yg~d~i~l~pR~~klGLgtAy~hgl~~a---~g~fiviMDaDls 100 (238)
T KOG2978|consen 26 AKYMSEEGKKYEIIIVDDASPDGTQEVAKALQK--IYGEDNILLKPRTKKLGLGTAYIHGLKHA---TGDFIVIMDADLS 100 (238)
T ss_pred HhhhhhhcCceEEEEEeCCCCCccHHHHHHHHH--HhCCCcEEEEeccCcccchHHHHhhhhhc---cCCeEEEEeCccC
Confidence 3444555665444444332 2445555543 12344677777778889989999988888 6776 55578885
Q ss_pred cCCC-hHHHHHHHHhcCCcEEEEEE
Q psy9164 81 CDFP-FKDLVSFHKNHGKEGTIVVT 104 (380)
Q Consensus 81 ~~~~-l~~~l~~h~~~~~~~tl~~~ 104 (380)
.... +.++++..++.+-+.++.+.
T Consensus 101 HhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 101 HHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred CCchhHHHHHHHhhccCcceeeeee
Confidence 5544 57777766666556665443
No 312
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=38.22 E-value=55 Score=28.29 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCCh--HHHHHHHcccccc-CCcEEEEe
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRA--EQMEDELTVETKK-LGISLVFS 46 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~l~~~~~~-~~~~i~~~ 46 (380)
+|.-++++|.+.|+++++++-+|.. ..++...++...+ .++.+.+.
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 3567889999999999999988853 3355544443333 56666443
No 313
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=36.26 E-value=2.3e+02 Score=22.83 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCC----CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhC---CCCCcEEE
Q psy9164 2 LLHQIEALVEAGV----REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILN---KSQEPFFV 74 (380)
Q Consensus 2 i~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~---~~~~~~lv 74 (380)
|..+|+.+.+..- -+|+|+.....+...+.+.. .+..+.........|-+.++..+..... ...+-+++
T Consensus 12 i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~----~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~ 87 (183)
T cd06438 12 IGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA----AGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVV 87 (183)
T ss_pred HHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH----cCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4566777776543 35766665544555555433 1223333233444567777777666552 11344678
Q ss_pred EeCCcccCCC-hHHHHHHHHh
Q psy9164 75 LNSDIICDFP-FKDLVSFHKN 94 (380)
Q Consensus 75 ~~gD~i~~~~-l~~~l~~h~~ 94 (380)
+.+|...+.+ +..+++.+.+
T Consensus 88 ~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 88 FDADNLVDPNALEELNARFAA 108 (183)
T ss_pred EcCCCCCChhHHHHHHHHHhh
Confidence 8999988777 5777776644
No 314
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.93 E-value=3.1e+02 Score=24.19 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred HHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC
Q psy9164 5 QIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP 84 (380)
Q Consensus 5 ~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~ 84 (380)
..+.+.+ -++|+++....+..+-+++.....+.+...... .+.+........+. ++|++++-+--=...+
T Consensus 121 ~~~~i~~--a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~--~~Dv~I~iS~sg~~~~ 190 (278)
T PRK11557 121 CVTMLRS--ARRIILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALS--PDDLLLAISYSGERRE 190 (278)
T ss_pred HHHHHhc--CCeEEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCC--CCCEEEEEcCCCCCHH
Confidence 3344443 468888776677777788776545556655432 22333444444554 6777665533222344
Q ss_pred hHHHHHHHHhcCCcEEEEE
Q psy9164 85 FKDLVSFHKNHGKEGTIVV 103 (380)
Q Consensus 85 l~~~l~~h~~~~~~~tl~~ 103 (380)
+..+++..+++++....++
T Consensus 191 ~~~~~~~ak~~ga~iI~IT 209 (278)
T PRK11557 191 LNLAADEALRVGAKVLAIT 209 (278)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 6677777777776544443
No 315
>PRK10481 hypothetical protein; Provisional
Probab=35.88 E-value=2.9e+02 Score=23.81 Aligned_cols=76 Identities=18% Similarity=0.099 Sum_probs=37.8
Q ss_pred CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCChHHHHHHH
Q psy9164 14 VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFH 92 (380)
Q Consensus 14 i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~l~~~l~~h 92 (380)
-+++.|++.+.. ++.+..++ +...+.++.+.......++...+..+...+....-|++++.|=-++. ..++.++..
T Consensus 129 g~riGVitP~~~-qi~~~~~k-w~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-~~~~~le~~ 204 (224)
T PRK10481 129 GHQVGVIVPVEE-QLAQQAQK-WQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-RHRDLLQKA 204 (224)
T ss_pred CCeEEEEEeCHH-HHHHHHHH-HHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-HHHHHHHHH
Confidence 366666665532 22222222 12224454444333334555566666555534466788888765554 445555543
No 316
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=34.95 E-value=2.5e+02 Score=22.84 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCccc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIIC 81 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~ 81 (380)
|+...+.+.++ ++|+++....+..+-+++.....+.+..+....+.. ...+. ++|++++-+--=.
T Consensus 23 l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----------~~~~~--~~D~vI~iS~sG~ 87 (179)
T cd05005 23 LDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-----------TPAIG--PGDLLIAISGSGE 87 (179)
T ss_pred HHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-----------CCCCC--CCCEEEEEcCCCC
Confidence 34455666655 788887665666666666654444566665543210 11232 6777666543323
Q ss_pred CCChHHHHHHHHhcCCcEEEEE
Q psy9164 82 DFPFKDLVSFHKNHGKEGTIVV 103 (380)
Q Consensus 82 ~~~l~~~l~~h~~~~~~~tl~~ 103 (380)
..++.++++..+++++....++
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEE
Confidence 4456777787778776543333
No 317
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=34.13 E-value=1.8e+02 Score=27.24 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
++.+-+.+.+.|.++++|+++... +++++.+++ .++++.+....+..-|...+..+.+.....+-|++|
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~----~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 92 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDE----AGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIA 92 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHH----CCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 455566778889999999997532 345555543 355555444444445566666666665333446666
Q ss_pred EeCCcc
Q psy9164 75 LNSDII 80 (380)
Q Consensus 75 ~~gD~i 80 (380)
+.|-.+
T Consensus 93 iGGGSv 98 (379)
T TIGR02638 93 IGGGSP 98 (379)
T ss_pred eCChHH
Confidence 455443
No 318
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=32.24 E-value=3e+02 Score=22.92 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCC---CEEEEEccCChH----HHHHHHccccccCCcEEEEee--cCCCCCCchHHHHhHHhhCCCCCcE
Q psy9164 2 LLHQIEALVEAGV---REVILAVSYRAE----QMEDELTVETKKLGISLVFSH--ENEPLGTAGPLALAKDILNKSQEPF 72 (380)
Q Consensus 2 i~~~l~~l~~~gi---~~i~vv~~~~~~----~i~~~l~~~~~~~~~~i~~~~--~~~~~gt~~al~~a~~~i~~~~~~~ 72 (380)
|...|+.+...-. -+++|+-....+ .++++..+ ....++++.... .....|-+.+...+..... .+-+
T Consensus 12 l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~--gd~i 88 (219)
T cd06913 12 LDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKK-LEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS--GRYL 88 (219)
T ss_pred HHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHh-CcccCeEEEEecccCCCCccHHHHHHHHHHhcC--CCEE
Confidence 5667788876533 266666543322 33333222 111233333222 2234465666655555552 4556
Q ss_pred EEEeCCcccCCC-hHHHHHHHHhcC
Q psy9164 73 FVLNSDIICDFP-FKDLVSFHKNHG 96 (380)
Q Consensus 73 lv~~gD~i~~~~-l~~~l~~h~~~~ 96 (380)
+.+.+|.+...+ +..+++...+..
T Consensus 89 ~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 89 CFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred EEECCCccCChhHHHHHHHHHHhCC
Confidence 788999866655 677777665544
No 319
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.72 E-value=2.2e+02 Score=21.28 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCEEEEEccCCh-------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE
Q psy9164 5 QIEALVEAGVREVILAVSYRA-------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 5 ~l~~l~~~gi~~i~vv~~~~~-------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv 74 (380)
-+..|++.|++.|+-+..... +.+++.. +..|+...++.-....-|...+....+.+.....++|+
T Consensus 19 d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a----~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~ 91 (110)
T PF04273_consen 19 DLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAA----EALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLA 91 (110)
T ss_dssp HHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHH----HHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHH----HHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 577899999998888775422 1233443 33577776665443333444455555555333556554
No 320
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.71 E-value=2.8e+02 Score=22.44 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcC---CCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchH--HHHhHHhhC-CCCCcEEEE
Q psy9164 2 LLHQIEALVEAG---VREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGP--LALAKDILN-KSQEPFFVL 75 (380)
Q Consensus 2 i~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~a--l~~a~~~i~-~~~~~~lv~ 75 (380)
++.+++.+.+.| +++++... +-.+++++.+.. .|.+..+. .|+.+. ...+.+.+. ..-+.|+++
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a-~a~~~l~~~l~~----~Gf~pv~~-----kG~~Dv~laIDame~~~~~~iD~~vLv 112 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQ-YASDKLIEAVVN----QGFEPIIV-----AGDVDVRMAVEAMELIYNPNIDAVALV 112 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEech-hccHHHHHHHHH----CCceEEEe-----cCcccHHHHHHHHHHhccCCCCEEEEE
Confidence 456788888888 45555432 334556666644 34554332 233332 224444442 123568999
Q ss_pred eCCcccCCChHHHHHHHHhcCCcEEEEE
Q psy9164 76 NSDIICDFPFKDLVSFHKNHGKEGTIVV 103 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~h~~~~~~~tl~~ 103 (380)
.||- ||..+++..++++..+..+.
T Consensus 113 SgD~----DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 113 TRDA----DFLPVINKAKENGKETIVIG 136 (160)
T ss_pred eccH----hHHHHHHHHHHCCCEEEEEe
Confidence 9985 88999999999887655544
No 321
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=31.58 E-value=1.6e+02 Score=22.13 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCEEEEEccC--ChHHHHHHHccccccCCcEEE
Q psy9164 2 LLHQIEALVEAGVREVILAVSY--RAEQMEDELTVETKKLGISLV 44 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~--~~~~i~~~l~~~~~~~~~~i~ 44 (380)
|...++.+.+.++++|++.++. ..+....|+.+..+..++++.
T Consensus 45 i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvs 89 (112)
T cd01025 45 IDKLLERIAKGQVKEVILATNPTVEGEATALYIAKLLKDFGVKVT 89 (112)
T ss_pred HHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeE
Confidence 3455667777788999998876 356666666654333445444
No 322
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=31.06 E-value=4e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=29.8
Q ss_pred CCCCchHHHHhHHhhCCCCCcEEEEeCCcc-cCCC-hHHHHHHHHh-cCCcEEE
Q psy9164 51 PLGTAGPLALAKDILNKSQEPFFVLNSDII-CDFP-FKDLVSFHKN-HGKEGTI 101 (380)
Q Consensus 51 ~~gt~~al~~a~~~i~~~~~~~lv~~gD~i-~~~~-l~~~l~~h~~-~~~~~tl 101 (380)
..|-+.++..+..... .+-++++.+|.. .+.+ +.++++.... .+.+++.
T Consensus 100 n~Gkg~A~~~g~~~a~--gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~ 151 (306)
T PRK13915 100 RPGKGEALWRSLAATT--GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVK 151 (306)
T ss_pred CCCHHHHHHHHHHhcC--CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Confidence 3466666666655552 344678899985 5554 6788877653 3344443
No 323
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=30.35 E-value=1.4e+02 Score=23.10 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred CCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEE
Q psy9164 69 QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVV 103 (380)
Q Consensus 69 ~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~ 103 (380)
.+.++++.|| -||.++++..++++....++.
T Consensus 96 ~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 96 PDTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp -SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred CCEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 4779999999 478899998888887666655
No 324
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=30.23 E-value=3.9e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHH
Q psy9164 51 PLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVS 90 (380)
Q Consensus 51 ~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~ 90 (380)
..+-+.+.-.+..... .+-++++.+|++...+ +..+++
T Consensus 73 ~f~~a~arN~g~~~A~--~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 73 PFSRAKARNIGAKYAR--GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CcCHHHHHHHHHHHcC--CCEEEEEcCCeeeCHHHHHHHHH
Confidence 4566666666666662 4446777999988877 566666
No 325
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=30.13 E-value=2.5e+02 Score=26.23 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
++++-+.+.+.|.++++|+++... +++.+.+++ .++++.....-+..-|...+..+.+.+...+-|++|
T Consensus 14 l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~----~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 89 (374)
T cd08189 14 LAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEG----AGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILA 89 (374)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHh----cCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 345556777789999999987532 344444433 355555444444445566666666665433456766
Q ss_pred EeCCc
Q psy9164 75 LNSDI 79 (380)
Q Consensus 75 ~~gD~ 79 (380)
+.|--
T Consensus 90 iGGGS 94 (374)
T cd08189 90 VGGGS 94 (374)
T ss_pred eCCcc
Confidence 44543
No 326
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=29.76 E-value=4.6e+02 Score=27.75 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=42.4
Q ss_pred EEEEEccCChHHHHHHHccccccCCcEEEEeecCC-CCCCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHH
Q psy9164 16 EVILAVSYRAEQMEDELTVETKKLGISLVFSHENE-PLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHK 93 (380)
Q Consensus 16 ~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 93 (380)
+|+|+-....+..++..++ .+ +.+...++ ..+-++++..+..... .+-++++.+|.+...+ ++.++..+.
T Consensus 294 EViVVDDgS~D~t~~la~~----~~--v~yI~R~~n~~gKAGnLN~aL~~a~--GEyIavlDAD~ip~pdfL~~~V~~f~ 365 (852)
T PRK11498 294 NIWILDDGGREEFRQFAQE----VG--VKYIARPTHEHAKAGNINNALKYAK--GEFVAIFDCDHVPTRSFLQMTMGWFL 365 (852)
T ss_pred EEEEEeCCCChHHHHHHHH----CC--cEEEEeCCCCcchHHHHHHHHHhCC--CCEEEEECCCCCCChHHHHHHHHHHH
Confidence 4555544445555555543 12 34444433 3345677777777763 4556888999987777 466666554
Q ss_pred hc
Q psy9164 94 NH 95 (380)
Q Consensus 94 ~~ 95 (380)
+.
T Consensus 366 ~d 367 (852)
T PRK11498 366 KD 367 (852)
T ss_pred hC
Confidence 43
No 327
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=29.56 E-value=65 Score=24.62 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCEEEEEccC-ChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCc--cc
Q psy9164 5 QIEALVEAGVREVILAVSY-RAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDI--IC 81 (380)
Q Consensus 5 ~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~--i~ 81 (380)
+|+.+.+...-+++|.... ......+.+. ...+.+ +..| ...+-+..+.+|........+.++++.+|. +.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~--~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLW---LPSGFS--FFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHH---H-TTSE--EEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccc---cCCCCE--Eeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCC
Confidence 4677778777777776654 3333333211 111233 3444 223445677777666633366899999998 55
Q ss_pred CCChHHHHHHHHhc
Q psy9164 82 DFPFKDLVSFHKNH 95 (380)
Q Consensus 82 ~~~l~~~l~~h~~~ 95 (380)
...|.+.++..++.
T Consensus 75 ~~~l~~A~~~L~~~ 88 (122)
T PF09837_consen 75 PDDLEQAFEALQRH 88 (122)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccC
Confidence 65677766655444
No 328
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=28.80 E-value=3.9e+02 Score=25.10 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
+++..+.+.+.|.++++||+... .+++.+.|.. .++++.+..+-.+.=+...+..+.+...+.+-|++|.
T Consensus 17 l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~----~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 17 LKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDA----AGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred HHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHh----cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 45677788888999999999862 4666666654 3455554444333334455555555554334555555
Q ss_pred eCCcccCCChHHHHHH
Q psy9164 76 NSDIICDFPFKDLVSF 91 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~ 91 (380)
-|-= ..+|..+.+..
T Consensus 93 lGGG-S~~D~AK~i~~ 107 (377)
T COG1454 93 LGGG-SVIDAAKAIAL 107 (377)
T ss_pred eCCc-cHHHHHHHHHH
Confidence 3321 23344444443
No 329
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=27.84 E-value=92 Score=20.99 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHcCCCEEEEEccCChHHHHHHHcc
Q psy9164 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTV 34 (380)
Q Consensus 1 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~ 34 (380)
|+++.++.+.+.|++.+.+.+........++..+
T Consensus 46 L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 46 LLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp HHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH
T ss_pred hhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH
Confidence 5778888888899999999888776655555543
No 330
>PRK10063 putative glycosyl transferase; Provisional
Probab=27.73 E-value=4e+02 Score=23.04 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=47.6
Q ss_pred HHHHHHHHHHc----CC-CEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEe
Q psy9164 2 LLHQIEALVEA----GV-REVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLN 76 (380)
Q Consensus 2 i~~~l~~l~~~----gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~ 76 (380)
|..+|+.+.+. +. -+++|+=+...+...+.+++..... .+.+..++ ..|-+.++..+.+... .+-++.++
T Consensus 16 l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~--~i~~i~~~-~~G~~~A~N~Gi~~a~--g~~v~~ld 90 (248)
T PRK10063 16 IVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF--NLRFVSEP-DNGIYDAMNKGIAMAQ--GRFALFLN 90 (248)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC--CEEEEECC-CCCHHHHHHHHHHHcC--CCEEEEEe
Confidence 45667777532 22 2566654433344444444321111 24445444 4488888888888772 34467778
Q ss_pred CCcccCCChHHHHHHHHhc
Q psy9164 77 SDIICDFPFKDLVSFHKNH 95 (380)
Q Consensus 77 gD~i~~~~l~~~l~~h~~~ 95 (380)
+|-+...+..+++......
T Consensus 91 ~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 91 SGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CCcccCcCHHHHHHHHHhC
Confidence 7766655654455444433
No 331
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=26.53 E-value=3.5e+02 Score=21.99 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcC-CCEEEEEccCChHHHHHHHccccccCCcEEEEeec---CCCCCCchHHHHhHHhhCC--------CC
Q psy9164 2 LLHQIEALVEAG-VREVILAVSYRAEQMEDELTVETKKLGISLVFSHE---NEPLGTAGPLALAKDILNK--------SQ 69 (380)
Q Consensus 2 i~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~---~~~~gt~~al~~a~~~i~~--------~~ 69 (380)
|..+|+.|.+.. --+|+|+-....+...+.+.. ......+.+... ....|-+.++..+...... .+
T Consensus 12 l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~--~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~ 89 (191)
T cd06436 12 IQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRL--AITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPE 89 (191)
T ss_pred HHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhh--eecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCC
Confidence 566788887764 235666655444544444441 111123443332 2345777888777766521 01
Q ss_pred -CcEEEEeCCcccCCC-hHHHHHHH
Q psy9164 70 -EPFFVLNSDIICDFP-FKDLVSFH 92 (380)
Q Consensus 70 -~~~lv~~gD~i~~~~-l~~~l~~h 92 (380)
+-++++.+|...+.+ +..+.+..
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhh
Confidence 236788999877776 55554443
No 332
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.38 E-value=3e+02 Score=25.75 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
++..-+.+.+.|.++++|+++... +++++.+++ .++++......+..-|...+..+.+.....+-|++|
T Consensus 16 l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~----~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 91 (377)
T cd08176 16 IKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDE----AGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIIS 91 (377)
T ss_pred HHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345566777789999999987532 345555543 355555443333334455566555555333456666
Q ss_pred EeCCc
Q psy9164 75 LNSDI 79 (380)
Q Consensus 75 ~~gD~ 79 (380)
+.|--
T Consensus 92 vGGGS 96 (377)
T cd08176 92 IGGGS 96 (377)
T ss_pred eCCcH
Confidence 45543
No 333
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.30 E-value=3.3e+02 Score=25.31 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
++..-+.+.+.|.++++|+++... +++.+.+++ .++++......+..-|...+..+.+.+...+-|++|
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iia 86 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKE----AGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIA 86 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHH----cCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 455667777889999999987643 245555543 344444333333334555566665555322446666
Q ss_pred EeCCccc
Q psy9164 75 LNSDIIC 81 (380)
Q Consensus 75 ~~gD~i~ 81 (380)
+.|-.+.
T Consensus 87 iGGGs~~ 93 (370)
T cd08551 87 VGGGSVL 93 (370)
T ss_pred eCCchHH
Confidence 4554433
No 334
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=26.12 E-value=3.2e+02 Score=25.96 Aligned_cols=74 Identities=20% Similarity=0.121 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
++.+-+.+.+.|.++++|+++.. .+++.+.+.+ .++++.....-+..-|...+..+.+...+.+-|++|-
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~----~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEA----AGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVA 86 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHH----cCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 45566777888999999998753 2555555543 3555544433333334566666666553334466555
Q ss_pred -eCCc
Q psy9164 76 -NSDI 79 (380)
Q Consensus 76 -~gD~ 79 (380)
.|-.
T Consensus 87 iGGGS 91 (414)
T cd08190 87 VGGGS 91 (414)
T ss_pred eCCcc
Confidence 4443
No 335
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=25.88 E-value=4.8e+02 Score=23.60 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCCcEEEEeCCcccCCChHHHHHHHHhcCCcEEEEEEEc-CCCCceeEEEECCCC--ceeEEEeCCCCC--------CCC
Q psy9164 68 SQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV-EEPSKYGVVLYNEHG--CIESFIEKPQEF--------VSN 136 (380)
Q Consensus 68 ~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~tl~~~~~-~~~~~~g~v~~d~~~--~v~~~~ek~~~~--------~~~ 136 (380)
..+.+.+.+.|.+...-=-.++..|.++++++++=+.+. ...++-|.+.. .+| +++++.+-|.+. .-.
T Consensus 136 G~~yi~v~nvDNL~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~-~~g~~~vvEyse~p~e~~~~~~~~~~~~ 214 (300)
T cd00897 136 GKEYLFVSNIDNLGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQ-YEGKLRLLEIAQVPKEHVDEFKSIKKFK 214 (300)
T ss_pred CCEEEEEEecccccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEE-ECCEEEEEEeccCCHHHHHhhcCcccce
Confidence 356788889998654333567788888888888744443 33445666554 244 456665544321 235
Q ss_pred eEEEEEEEeCHhHHhhc
Q psy9164 137 KINAGMYIFNPSVLDRI 153 (380)
Q Consensus 137 ~~~~giyi~~~~~l~~l 153 (380)
+.++..+.|+-+.++.+
T Consensus 215 ~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 215 IFNTNNLWVNLKAVKRV 231 (300)
T ss_pred EEEEeEEEEEHHHHHHH
Confidence 67899999998888765
No 336
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.21 E-value=3.6e+02 Score=25.10 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
+..+-+.+.+.|.++++|+++.. .+++++.+.+ .++++......+..-|...+..+.+.....+-|++|
T Consensus 12 ~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~----~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 87 (370)
T cd08192 12 IKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLED----AGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIA 87 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34556677778999999998743 2455555543 345554333333334555666666655333557766
Q ss_pred EeCCcc
Q psy9164 75 LNSDII 80 (380)
Q Consensus 75 ~~gD~i 80 (380)
+.|-.+
T Consensus 88 iGGGSv 93 (370)
T cd08192 88 FGGGSA 93 (370)
T ss_pred eCCchH
Confidence 455443
No 337
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.90 E-value=4e+02 Score=24.89 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-
Q psy9164 3 LHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL- 75 (380)
Q Consensus 3 ~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~- 75 (380)
+.+-+.+.+.|.++++|+++... +++.+.|.+ .++++......+..-+...+..+.+.....+-|++|-
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~----~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKK----EGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIAL 87 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHH----CCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 44556666688899999997532 344455433 3555544433333344555666655553334566664
Q ss_pred eCCc
Q psy9164 76 NSDI 79 (380)
Q Consensus 76 ~gD~ 79 (380)
.|-.
T Consensus 88 GGGS 91 (375)
T cd08194 88 GGGS 91 (375)
T ss_pred CCch
Confidence 4433
No 338
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=24.90 E-value=6.5e+02 Score=26.03 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=33.7
Q ss_pred EEEEeecCCCC-CCchHHHHhHHhhCCCCCcEEEEeCCcccCCC-hHHHHHHHHhc
Q psy9164 42 SLVFSHENEPL-GTAGPLALAKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKNH 95 (380)
Q Consensus 42 ~i~~~~~~~~~-gt~~al~~a~~~i~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 95 (380)
.+.+...++.. +-++++..+.+..+ .+-++++.+|.+...+ +++++..+.+.
T Consensus 203 ~v~yi~r~~n~~~KAgnLN~al~~a~--gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 203 GVNYITRPRNVHAKAGNINNALKHTD--GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CcEEEECCCCCCCChHHHHHHHHhcC--CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 34455444333 44677888877773 4557888999988777 57777766443
No 339
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.84 E-value=4e+02 Score=24.77 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh---HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-eC
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA---EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL-NS 77 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~-~g 77 (380)
++++-+.+.+.|.++++|+++... +.+++.+++ .++.+.....-+..-+...+..+.+.....+-|++|- .|
T Consensus 11 l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG 86 (367)
T cd08182 11 IAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKP----LGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG 86 (367)
T ss_pred HHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHH----cCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 345556677789999999987643 455555543 2445444333333344566666666653334466664 44
Q ss_pred Cc
Q psy9164 78 DI 79 (380)
Q Consensus 78 D~ 79 (380)
-.
T Consensus 87 Gs 88 (367)
T cd08182 87 GS 88 (367)
T ss_pred cH
Confidence 33
No 340
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=24.04 E-value=3.7e+02 Score=25.15 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEEEccCCh------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-
Q psy9164 3 LHQIEALVEAGVREVILAVSYRA------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL- 75 (380)
Q Consensus 3 ~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~- 75 (380)
+++-+.+.+.|.++++|+++... +++.+.+.+ .+.++.+...-+..-+...+..+.+.....+-|++|-
T Consensus 17 ~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIai 92 (377)
T cd08188 17 KLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEE----AGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAV 92 (377)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 44455667779999999987532 445555543 3444444332222234455555555543334566664
Q ss_pred eCCcc
Q psy9164 76 NSDII 80 (380)
Q Consensus 76 ~gD~i 80 (380)
.|-.+
T Consensus 93 GGGsv 97 (377)
T cd08188 93 GGGSP 97 (377)
T ss_pred CCchH
Confidence 44433
No 341
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=23.25 E-value=1.5e+02 Score=26.07 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC-h----HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR-A----EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL- 75 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~-~----~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~- 75 (380)
|+.+-+.|.+.+.++++|+++.. . +++++.++ ..++++.+........+.+.+......+...+-+++|-
T Consensus 7 ~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~----~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~v 82 (250)
T PF13685_consen 7 LDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLK----SAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGV 82 (250)
T ss_dssp GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHH----TTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHH----HcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEe
Confidence 44556777778899999999875 2 44555543 34666665443222345566666666553223445554
Q ss_pred eCCcccCCChHHHHHHHH
Q psy9164 76 NSDIICDFPFKDLVSFHK 93 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~h~ 93 (380)
.|-.+. |+.++..+..
T Consensus 83 GgG~i~--D~~K~~A~~~ 98 (250)
T PF13685_consen 83 GGGTII--DIAKYAAFEL 98 (250)
T ss_dssp ESHHHH--HHHHHHHHHH
T ss_pred CCcHHH--HHHHHHHHhc
Confidence 443333 3445554433
No 342
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=22.89 E-value=1.3e+02 Score=20.52 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=33.6
Q ss_pred cCCCEEEEEccCChHHHHHHHccc---cccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE
Q psy9164 12 AGVREVILAVSYRAEQMEDELTVE---TKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 12 ~gi~~i~vv~~~~~~~i~~~l~~~---~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv 74 (380)
.||.+|.+--.+...-|...|-+. ..-.|..+.-.+-..+.=|.+....|+.+.+ .++|||
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~~iyG~~l~~~~iAFSqPT~~G~~fA~~y~~--~~~flv 69 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAARENFIYGCVLPKNEIAFSQPTESGKKFAKKYFG--TDDFLV 69 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHhccCceEechhheEecCCCHhHHHHHHHHcC--CCCEEe
Confidence 588999987776544444444331 1112444432222223344556677888886 667876
No 343
>KOG2638|consensus
Probab=22.59 E-value=1e+02 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred hhCCCCCcEEEEeCCcccC-CChHHHHHHHHhcCCcEEE
Q psy9164 64 ILNKSQEPFFVLNSDIICD-FPFKDLVSFHKNHGKEGTI 101 (380)
Q Consensus 64 ~i~~~~~~~lv~~gD~i~~-~~l~~~l~~h~~~~~~~tl 101 (380)
++...++.+.|-+.|-+.. .|| .+++...+.+..-.+
T Consensus 233 llaqGkEylFVSNiDNLGAtvDL-~ILn~~i~~~~ey~M 270 (498)
T KOG2638|consen 233 LLAQGKEYLFVSNIDNLGATVDL-NILNHVINNNIEYLM 270 (498)
T ss_pred HHhCCceEEEEeccccccceeeH-HHHHHHhcCCCceEE
Confidence 4433466778889998653 343 345555555544443
No 344
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.97 E-value=3.3e+02 Score=25.56 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
+.++-+.+.+.|.++++|+++.. .+++.+.+++ .++.+.+....++.-|...+..+.+.....+-|++|
T Consensus 19 ~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~----~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 19 LTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEE----RNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 34556777888999999998752 2456666643 355554443433344556666666666433557777
Q ss_pred EeCC
Q psy9164 75 LNSD 78 (380)
Q Consensus 75 ~~gD 78 (380)
+.|-
T Consensus 95 iGGG 98 (383)
T PRK09860 95 LGGG 98 (383)
T ss_pred eCCc
Confidence 4443
No 345
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=21.85 E-value=4.2e+02 Score=24.09 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh-----HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA-----EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL- 75 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~-----~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~- 75 (380)
++..-+.+.+.|.++++|+++... +.+.+.+++ . +++.........-|...+..+.+.+...+-|++|.
T Consensus 11 l~~l~~~~~~~g~~~~liv~~~~~~~~~~~~v~~~l~~----~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIai 85 (332)
T cd07766 11 IEKIGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKK----L-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAV 85 (332)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCchhhhHHHHHHHHHHh----c-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEe
Confidence 345556667778899999997643 234444432 2 33333332232245666666666653335577664
Q ss_pred eCCcccCCChHHHHHHH
Q psy9164 76 NSDIICDFPFKDLVSFH 92 (380)
Q Consensus 76 ~gD~i~~~~l~~~l~~h 92 (380)
.|-.+. |..+++...
T Consensus 86 GGGs~~--D~aK~ia~~ 100 (332)
T cd07766 86 GGGSTL--DTAKAVAAL 100 (332)
T ss_pred CCchHH--HHHHHHHHH
Confidence 444433 344554443
No 346
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.76 E-value=5.5e+02 Score=23.95 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCEEEEEccCCh-------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRA-------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~-------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv 74 (380)
++.+-+.+.+.| ++++|+++... +++.+.+++ .++++.....-+..-|...+..+.+.....+-|++|
T Consensus 14 l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Ii 88 (380)
T cd08185 14 LNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQ----AGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVV 88 (380)
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHH----cCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345556666677 89999997542 345555533 355554433333334455555555554333456766
Q ss_pred -EeCCc
Q psy9164 75 -LNSDI 79 (380)
Q Consensus 75 -~~gD~ 79 (380)
+.|--
T Consensus 89 avGGGS 94 (380)
T cd08185 89 GLGGGS 94 (380)
T ss_pred EeCCcc
Confidence 45543
No 347
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.58 E-value=6.5e+02 Score=23.27 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEEEccCCh-------HHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 3 LHQIEALVEAGVREVILAVSYRA-------EQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 3 ~~~l~~l~~~gi~~i~vv~~~~~-------~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
+.+-+.+.+.| ++++|+++... +++.+.+.+ .++++.....-+..-|...+..+.+...+.+-|++|-
T Consensus 15 ~~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~----~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (357)
T cd08181 15 EKHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEE----LGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIG 89 (357)
T ss_pred HHHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHH----cCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 44455666778 89999987542 445555543 3555554433333445565666666553334466555
Q ss_pred -eCCc
Q psy9164 76 -NSDI 79 (380)
Q Consensus 76 -~gD~ 79 (380)
.|--
T Consensus 90 vGGGS 94 (357)
T cd08181 90 IGGGS 94 (357)
T ss_pred eCCch
Confidence 4433
No 348
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.53 E-value=2e+02 Score=26.51 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHHHHc-CCCEEEEEccCChHHHHHHHccccccCCcE--EEEeecCC----CCCCchHHHHhHHhhCCCCCcEEE
Q psy9164 2 LLHQIEALVEA-GVREVILAVSYRAEQMEDELTVETKKLGIS--LVFSHENE----PLGTAGPLALAKDILNKSQEPFFV 74 (380)
Q Consensus 2 i~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~--i~~~~~~~----~~gt~~al~~a~~~i~~~~~~~lv 74 (380)
+..++..|.+. +++-.+++++.|.+.+.+.+.. +++. +.+..... ...++..+....+.+...+-|+++
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~ 91 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL----FHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVL 91 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh----cCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34566777765 7888899999887766666644 2222 22221111 112223344444555444568999
Q ss_pred EeCCc
Q psy9164 75 LNSDI 79 (380)
Q Consensus 75 ~~gD~ 79 (380)
+.||.
T Consensus 92 ~~gd~ 96 (365)
T TIGR00236 92 VQGDT 96 (365)
T ss_pred EeCCc
Confidence 99985
No 349
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.39 E-value=4e+02 Score=24.85 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEE
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVL 75 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~ 75 (380)
++++-+.+.+.|.++++|+++.. .+++++.+++ .++++......+..-|...+..+.+.+...+-|++|-
T Consensus 14 l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (376)
T cd08193 14 LARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEA----AGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIG 89 (376)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 34555667777999999998753 2445555433 3455544444444445566666665553324456555
Q ss_pred e
Q psy9164 76 N 76 (380)
Q Consensus 76 ~ 76 (380)
-
T Consensus 90 i 90 (376)
T cd08193 90 F 90 (376)
T ss_pred e
Confidence 3
No 350
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.08 E-value=4.3e+02 Score=24.76 Aligned_cols=74 Identities=9% Similarity=0.218 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEE-
Q psy9164 2 LLHQIEALVEAGVREVILAVSYR------AEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFV- 74 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv- 74 (380)
++.+-+.+.+.|.++++|+++.. .+++.+.+++ .++++.+....+..-|.+.+..+.+.+...+-|++|
T Consensus 18 l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~----~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 93 (382)
T PRK10624 18 IGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDA----AGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIA 93 (382)
T ss_pred HHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHH----CCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 34556677778999999998753 2345555543 355555443333334455566555555332446666
Q ss_pred EeCCc
Q psy9164 75 LNSDI 79 (380)
Q Consensus 75 ~~gD~ 79 (380)
+.|--
T Consensus 94 iGGGS 98 (382)
T PRK10624 94 IGGGS 98 (382)
T ss_pred eCChH
Confidence 45543
No 351
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.85 E-value=2.7e+02 Score=23.33 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCEEEEEccC--ChHHHHHHHccccccCCcEEEEe
Q psy9164 2 LLHQIEALVEAGVREVILAVSY--RAEQMEDELTVETKKLGISLVFS 46 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~--~~~~i~~~l~~~~~~~~~~i~~~ 46 (380)
|+..++.+.+.++++|++.++. ..+....|+.+..+..++++.-.
T Consensus 123 i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRl 169 (195)
T TIGR00615 123 IAALLKRLQEESVKEVILATNPTVEGEATALYIARLLQPFGVKVTRI 169 (195)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEee
Confidence 4566777777789999999986 45666666666444445665533
No 352
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=20.70 E-value=2.2e+02 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEe
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFS 46 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 46 (380)
++|.|+.+++.+| ++++ -++..+.+.+|-.. ....|+++...
T Consensus 55 v~~~l~~C~~~~I-dv~~-P~~~~~~l~~~r~~-F~a~Gv~l~~~ 96 (329)
T PF15632_consen 55 VDWCLDFCKEHGI-DVFV-PGRNRELLAAHRDE-FEALGVKLLTA 96 (329)
T ss_pred HHHHHHHHHHhCC-eEEE-cCccHHHHHHHHHH-HHHhCCEEEec
Confidence 6889999999998 4444 56666666666554 45568888763
No 353
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.68 E-value=3.7e+02 Score=20.10 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHccccccCCcEEEEeecCCCCCCchHHHHhHHhhCCCCCcEEEEeCCccc
Q psy9164 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIIC 81 (380)
Q Consensus 2 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~gt~~al~~a~~~i~~~~~~~lv~~gD~i~ 81 (380)
|+.+.+.+.++ ++|+++.......+-.++.......+........ ..........+. +++++++-+--=.
T Consensus 3 i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~i~iS~~g~ 72 (139)
T cd05013 3 LEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSD------PHLQLMSAANLT--PGDVVIAISFSGE 72 (139)
T ss_pred HHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecC------HHHHHHHHHcCC--CCCEEEEEeCCCC
Confidence 56677778776 6787777666666666665543444544443322 111111112232 5565554332212
Q ss_pred CCChHHHHHHHHhcCCcEE
Q psy9164 82 DFPFKDLVSFHKNHGKEGT 100 (380)
Q Consensus 82 ~~~l~~~l~~h~~~~~~~t 100 (380)
+.++.++++..++++....
T Consensus 73 ~~~~~~~~~~a~~~g~~iv 91 (139)
T cd05013 73 TKETVEAAEIAKERGAKVI 91 (139)
T ss_pred CHHHHHHHHHHHHcCCeEE
Confidence 3456777777777765433
Done!