RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9164
(380 letters)
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 376 bits (968), Expect = e-132
Identities = 138/201 (68%), Positives = 163/201 (81%), Gaps = 1/201 (0%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ HQIEAL +AGV+E+ILAV+YR E M L KKLGI + FS E EPLGTAGPLAL
Sbjct: 33 MIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLAL 92
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE- 119
A+D+L EPFFVLNSD+ICDFP +L+ FHK HG EGTI+VT+VE+PSKYGVV+++E
Sbjct: 93 ARDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDEN 152
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL 179
G IE F+EKP+ FV NKINAG+YI NPSVLDRI ++PTSIEKEIFP M+ E QLYA EL
Sbjct: 153 TGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYEL 212
Query: 180 KGFWMDVGQPRDFLKGMCLYL 200
GFWMD+GQP+DFLKGM LYL
Sbjct: 213 PGFWMDIGQPKDFLKGMSLYL 233
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 243 bits (622), Expect = 8e-78
Identities = 114/333 (34%), Positives = 176/333 (52%), Gaps = 20/333 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ + +EAL AGV E++L V Y EQ+E+ + + LG+ + + E EPLGTAG L
Sbjct: 34 LIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFG-DGEGLGVRITYVVEKEPLGTAGALKN 92
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVV-LYNE 119
A D+L + F VLN D++ D +L+ FHK G TI +T+V +PS++GVV +
Sbjct: 93 ALDLLGG--DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDG 150
Query: 120 HGCIESFIEKP--QEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKEIFP-LMSKEKQLY 175
G + F EKP +E SN INAG+YIF+P V D IE + E+E+ P L +K + +Y
Sbjct: 151 DGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVY 210
Query: 176 AMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRI 235
+G+W+D+G P D L+ L L + ++E I+ + + IGPG +I
Sbjct: 211 GYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKI 270
Query: 236 G------PNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289
G P IG GV I GV IK S I+ + ++ S++ IIG C +G
Sbjct: 271 GPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIG------A 324
Query: 290 ITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
++G+ +IG + V + +V+ I
Sbjct: 325 SLIIGDVVIGINSEILPGVVVGPGSVVESGEIE 357
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 191 bits (488), Expect = 2e-59
Identities = 71/190 (37%), Positives = 112/190 (58%), Gaps = 6/190 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L + IE L AG+ E+IL V Y EQ+E+ + K G+++ + + EPLGTAG +
Sbjct: 31 ILEYIIERLARAGIDEIILVVGYLGEQIEEYFG-DGSKFGVNIEYVVQEEPLGTAGAVRN 89
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
A+D L + F V+N D++ D +L+ FH+ G + TI V +VE+PS+YGVV ++
Sbjct: 90 AEDFLGD--DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD 147
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE---IKPTSIEKEIFPLMSKEKQLYAM 177
G + F+EKP SN NAG+YIF P +LD I + + PL+ +E ++Y
Sbjct: 148 GRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGY 207
Query: 178 ELKGFWMDVG 187
+ G+W+D+G
Sbjct: 208 PVDGYWLDIG 217
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Many of the genes identified by this model
are in proximity to the GlmS and GlmM genes and are also
presumed to be GlmU. However, some archaeal genomes
contain multiple closely-related homologs from this
family and it is not clear what the substrate
specificity is for each of them.
Length = 393
Score = 157 bits (400), Expect = 2e-44
Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 34/306 (11%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L H IEAL +AG+ + + V Y E++ + + + G+ + + + E LGTA L
Sbjct: 33 LLEHIIEALRDAGIDDFVFVVGYGKEKVREYFG-DGSRGGVPIEYVVQEEQLGTADALGS 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
AK+ ++ + F VLN D++ D + L+ I V +V++PS YGVV +
Sbjct: 92 AKEYVD---DEFLVLNGDVLLDSDLLERLIRAEAP-----AIAVVEVDDPSDYGVVET-D 142
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI--EKEI---FPLMSKEKQL 174
G + +EKP+ SN INAG+Y+F+P + + +E S E E+ L+ E ++
Sbjct: 143 GGRVTGIVEKPENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEYELTDALQLLIDEGKV 202
Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTAT------ 228
A+EL GFW+DVG+P D L L++L + ++E I G V++ A
Sbjct: 203 KAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGTVEENVTIKGPVVIGEGAVIRSGTY 262
Query: 229 ------IGPGCRIGPN------VTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
IG C IGPN IG V I V IK S I+ + S++ +IG
Sbjct: 263 IEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIKNSIIMEGTKIPHLSYVGDSVIG 322
Query: 277 WKCVVG 282
C G
Sbjct: 323 ENCNFG 328
Score = 29.9 bits (68), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCI 253
A +G G + G NV+I PGV I G I
Sbjct: 361 AIVGDGVKTGINVSINPGVKIGSGARI 387
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 149 bits (378), Expect = 9e-43
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE I+ + + E + K G+ + ++ + EP GTA +AL
Sbjct: 33 MIQYTLSRLMNAGIREPIVICTQEHRFLVAEQLGDGSKFGLQVTYALQPEPRGTAPAVAL 92
Query: 61 AKDILNKSQ-EPFFVLNSDIICDFPFKDLVSFHKNHGKEG--TIVVTQVEEPSKYGVVLY 117
A D L E VL D I F++ V + +G T + VE+P+ YGV+ +
Sbjct: 93 AADFLGDDDPELVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEF 152
Query: 118 NEHGCIESFIEKPQEFV-SNKINAGMYIFNPSVLDRI--EIKP-----TSIEKEIFPLMS 169
+E+G + F+EKP SN + G+Y FN V + +K I I +
Sbjct: 153 DENGRVIRFVEKPDLPKASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALE 212
Query: 170 KEKQLYAMELKGF--WMDVGQPRDFLKGMCLYLNS 202
A +G+ W DVG + L
Sbjct: 213 DGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 145 bits (368), Expect = 1e-41
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 3/191 (1%)
Query: 2 LLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALA 61
L + +E L G+ ++L+V Y AEQ+E+ + + GI + + E EPLGT G + A
Sbjct: 32 LEYLLEYLARQGISRIVLSVGYLAEQIEEYF-GDGYRGGIRIYYVIEPEPLGTGGAIKNA 90
Query: 62 KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
L + + F VLN D D L++ + G + T+ + +V + S+YG V + G
Sbjct: 91 LPKLPE--DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGDG 148
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKG 181
+ +F+EK IN G+Y+ +L I S+E ++ P + K +LY E+ G
Sbjct: 149 RVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDG 208
Query: 182 FWMDVGQPRDF 192
+++D+G P D+
Sbjct: 209 YFIDIGIPEDY 219
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 141 bits (357), Expect = 5e-40
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L I+ + G R ++V+Y AE +ED + K G+++ + E++PLGTAG L+L
Sbjct: 31 ILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG-DGSKFGVNISYVREDKPLGTAGALSL 89
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
K +PF V+N DI+ + ++ L+ FHK + + T+ V + E YGVV
Sbjct: 90 LP---EKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG- 145
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK-----PTSIEKEIFPLMSKEKQLY 175
G I S EKP S +NAG+Y+ P VLD I P IEK L+ + K++
Sbjct: 146 GRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEK----LIKEGKKVG 199
Query: 176 AMELKGFWMDVGQPRDFLK 194
+ +W+D+G+P D+ K
Sbjct: 200 VFPIHEYWLDIGRPEDYEK 218
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a isoform
of GDP-mannose pyrophosphorylase. N-terminal domain of
the M1P-guanylyltransferase A-isoform like proteins:
The proteins of this family are likely to be a isoform
of GDP-mannose pyrophosphorylase. Their sequences are
highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective cell
wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 133 bits (337), Expect = 1e-36
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 1 MLLHQIEALVE-AGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLA 59
M+ H IEA + ++EV+L Y D ++ ++ + + + E +PLGTAG L
Sbjct: 33 MIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLY 92
Query: 60 LAKD-ILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVL 116
+D IL + FFVLN+D+ CDFP ++L+ FHK HG GTI+ T+ E+ S YG ++
Sbjct: 93 HFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV 152
Query: 117 YNEH-GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEI-------------------- 155
+ G + ++EKP+ FVS+ IN G+Y+F+P + D I+
Sbjct: 153 EDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGR 212
Query: 156 -KPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSL 203
+ +E+++ ++ +LY + FW + G +Y N L
Sbjct: 213 AEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTA-----GSAIYANRL 256
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 119 bits (302), Expect = 5e-32
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 11/196 (5%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHE-NEPLGTAGPLA 59
++ H ++ L AG+R +++ + A+Q+E L + G+ + S E +E L T G +
Sbjct: 32 LIDHALDRLAAAGIRRIVVNTHHLADQIEAHL--GDSRFGLRITISDEPDELLETGGGIK 89
Query: 60 LAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK--YGVVLY 117
A +L EPF V+N DI+ D L+ H +++ V P G
Sbjct: 90 KALPLLG--DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSL 147
Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAM 177
+ G + V+ G+ I +P + I S+ ++ +L+ +
Sbjct: 148 DADGRLRR---GGGGAVAPFTFTGIQILSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGL 203
Query: 178 ELKGFWMDVGQPRDFL 193
G W DVG P L
Sbjct: 204 VYDGLWFDVGTPERLL 219
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 115 bits (291), Expect = 7e-30
Identities = 64/249 (25%), Positives = 126/249 (50%), Gaps = 10/249 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + +E L+ AG+R++++ V + EL + G+ + ++ + EP G A + +
Sbjct: 33 MIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLI 92
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
A+D + + F + D I +L+ G TI++ +V++PS+YGVV ++E
Sbjct: 93 AEDFVG--DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED 150
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFP----LMSKEKQL 174
G + EKP+E SN G+Y ++PSV + I+ IKP++ E EI + K +
Sbjct: 151 GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLV 210
Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCR 234
A+ ++G+W+D G P L+ ++ ++ +++ + + I N +D IG +
Sbjct: 211 VAILIRGWWLDTGTPESLLEANN-FVRTVSKRQGFKIACPEEIAWNGWIDGPGLIGLASQ 269
Query: 235 IGPNVTIGP 243
+ + G
Sbjct: 270 LEKS-GYGQ 277
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. The family of known and putative
glucose-1-phosphate thymidyltransferase (also called
dTDP-glucose synthase) shows a deep split into a short
form (see TIGR01207) and a long form described by this
model. The homotetrameric short form is found in
numerous bacterial species that incorporate
dTDP-L-rhamnose, which it helps synthesize, into the
cell wall. It is subject to feedback inhibition. This
form, in contrast, is found in many species for which it
serves as a sugar-activating enzyme for antibiotic
biosynthesis and or other, unknown pathways, and in
which dTDP-L-rhamnose is not necessarily produced.
Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 116 bits (292), Expect = 2e-29
Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 28/316 (8%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L + IE L EAG+ ++ + V + E+ E ++ G + + + EPLG A +
Sbjct: 32 ILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYT 91
Query: 61 AKDILNKSQEPFFV-LNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
A+D L + F V L ++I D + + SF + + I++T+V +P+ +GV + +
Sbjct: 92 ARDFL--GDDDFVVYLGDNLIQDGISRFVKSFEEKD-YDALILLTKVRDPTAFGVAVLED 148
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPT-----SIEKEIFPLMSKEKQ 173
I +EKP+E SN G+Y+F P + + I+ IKP+ I I L+ K +
Sbjct: 149 GKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYK 208
Query: 174 LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGC 233
+ ++ G+W D G+P D L L L+ + ++ + + + I G V+V A I
Sbjct: 209 VGGSKVTGWWKDTGKPEDLLDANRLILDEV-EREVQGVDDESKIRGRVVVGEGAKIVNSV 267
Query: 234 RIGPNVTIGPGVVIEGG-----VCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRME 288
GP IG +IE I ++RDA V+ L+ +I G R+
Sbjct: 268 IRGP-AVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVI-----EGVQARIV 321
Query: 289 NITVLGECIIGWKCVV 304
+ +IG K +
Sbjct: 322 ------DSVIGKKVRI 331
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The long form, which has an extra
50 amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.The long from enzymes also have a left-handed
parallel helix domain at the c-terminus, whereas, th
eshort form enzymes do not have this domain. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose.
Length = 236
Score = 111 bits (279), Expect = 1e-28
Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 10/206 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ + IE L EAG+ ++ + V E++++ L + + G+ + + + EPLG A +
Sbjct: 33 IIQYAIEDLREAGIEDIGIVVGPTGEEIKEALG-DGSRFGVRITYILQEEPLGLAHAVLA 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
A+D L EPF V D + LV + +I++ +VE+P ++GV + ++
Sbjct: 92 ARDFLG--DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD- 148
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTS-----IEKEIFPLMSKEKQL 174
G I +EKP+E SN G+Y F P++ D I +KP+ I I L+ + +++
Sbjct: 149 GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRV 208
Query: 175 YAMELKGFWMDVGQPRDFLKGMCLYL 200
+ G+W D G P D L+ L L
Sbjct: 209 GYSIVTGWWKDTGTPEDLLEANRLLL 234
>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate
guanylyltransferase, C-terminal Left-handed parallel
beta helix (LbH) domain: Mannose-1-phosphate
guanylyltransferase is also known as GDP-mannose
pyrophosphorylase. It catalyzes the synthesis of
GDP-mannose from GTP and mannose-1-phosphate, and is
involved in the maintenance of cell wall integrity and
glycosylation. Similar to ADP-glucose pyrophosphorylase,
it contains an N-terminal catalytic domain that
resembles a dinucleotide-binding Rossmann fold and a
C-terminal LbH fold domain, presumably with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 80
Score = 103 bits (257), Expect = 2e-27
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
L+DP+A IG +IGPNV IGP V I GV ++R IL ++ V+ HSW++ I+GW V
Sbjct: 1 LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60
Query: 282 GQWVRMENITVLGE 295
G+W R+EN+TVLG+
Sbjct: 61 GRWTRLENVTVLGD 74
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 103 bits (260), Expect = 1e-24
Identities = 81/362 (22%), Positives = 145/362 (40%), Gaps = 62/362 (17%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H I+A G +++ + + AEQ+ L + + + E LGT +
Sbjct: 30 MLEHVIDAARALGPQKIHVVYGHGAEQVRKAL------ANRDVNWVLQAEQLGTGHAVLQ 83
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
A L VL D+ P + L+ H+ +G T++ ++ +P+ YG
Sbjct: 84 ALPFL-PDDGDVLVLYGDV----PLISAETLERLLEAHRQNG--ITLLTAKLPDPTGYGR 136
Query: 115 VLYNEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
++ G + + +E ++ +IN G+Y+F+ + L R ++ + + E
Sbjct: 137 IIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTD 196
Query: 164 IFPLMSKEKQ-------LYAMELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEG 214
+ L + + + E+ G + + Q L+ R + KLL G
Sbjct: 197 VIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQ--------RRIAK-KLLLAG 247
Query: 215 DGIV--GNVLVDPTATIG------PGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKS 266
+ + T IG P + V IG VVI G IK S I + ++K+
Sbjct: 248 VTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKA 307
Query: 267 HSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDEL 326
+S LEG IG C VG + R+ +VLG +G +V +N +G+
Sbjct: 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGA-----GVHIGNFVETKN-ARIGKGSKAGHLS 361
Query: 327 YV 328
Y+
Sbjct: 362 YL 363
Score = 28.0 bits (63), Expect = 9.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+GP R+ P +G GV I V K + I + + S+L IG +G
Sbjct: 320 CDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIG 375
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 100 bits (251), Expect = 3e-23
Identities = 79/351 (22%), Positives = 151/351 (43%), Gaps = 51/351 (14%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H I+A G ++++ V + AEQ+ + L + F + E LGT +
Sbjct: 32 MLEHVIDAARALGPDDIVVVVGHGAEQVREALAERDD-----VEFVLQEEQLGTGHAVLQ 86
Query: 61 AKDILNKSQEPF-FVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
A L + VL D+ I ++L++ H HG T++ ++++P+ YG ++
Sbjct: 87 ALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVR 146
Query: 118 NEHGCIESFIEK----PQEFVSNKINAGMYIFNPSVLDR--IEIKPTSIEKE-----IFP 166
+ +G + + +E+ +E +IN G+Y F+ + L R ++ + + E +
Sbjct: 147 DGNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIA 206
Query: 167 LMSKE-KQLYAMELKGFWMDVG--------QPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
+ E +++ A+ + +G + ++ R+ KL+ G +
Sbjct: 207 IARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQ---------RRIAEKLMLAGVTL 257
Query: 218 V--GNVLVDPTATIGPGCRIGPNVT------IGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
+ + IG I PNV IG VVI G IK S I +A++K++S
Sbjct: 258 IDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSV 317
Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
+EG +G VG + R+ VLG +G +V ++ +G+
Sbjct: 318 IEGSTVGEGATVGPFARLRPGAVLGA-----DVHIGNFVEVKK-ATIGKGS 362
Score = 29.5 bits (67), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
AT+GP R+ P +G V I V +K++TI + + ++L IG +G
Sbjct: 327 ATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIG 382
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 96.2 bits (240), Expect = 4e-22
Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 47/295 (15%)
Query: 63 DILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEH 120
I E +L+ D I + D++ FH G + T+ V +V EE S++GV+ +E+
Sbjct: 113 IIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN 172
Query: 121 GCIESFIEKPQE--FVSNKINAGMYIFNPSVL-------DRIEIKPTSIEKEIFPLMSKE 171
G I F+EKP + ++ + G+YIFN +L + K+I P + +
Sbjct: 173 GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLER 232
Query: 172 KQLYAMELKGFWMDVG-------------QPRDFL----KGMCLYLNSLRQKRPKLLKEG 214
++YA E G+W DVG P+ L + +Y + K +
Sbjct: 233 GKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVN-- 290
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
D V N LV GC I V + GV I G I+ S I+ D + + L
Sbjct: 291 DSEVSNSLV------AGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR 344
Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDEL 326
II V+G E + + G+ + ++ E I V+ + ++++ ++
Sbjct: 345 RAIIDKNVVIG-----EGVVIGGDKPEEDR---KRFRSEEGIVVVPKGMVIKLDI 391
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four of
the five naturally occurring 3,6-dideoxy sugars-abequose
(3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety of
biological processes, including cell adhesion, immune
response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 91.9 bits (229), Expect = 2e-21
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 54 TAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
T G L + L E F + D + D L+ FH++HGK T VT V P ++G
Sbjct: 104 TGGRLKRVRRYL-GDDETFMLTYGDGVSDVNINALIEFHRSHGKLAT--VTAVHPPGRFG 160
Query: 114 VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
+ ++ G + SF EKPQ IN G ++ P V D I+ T E+E ++K+ +
Sbjct: 161 ELDLDDDGQVTSFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGE 219
Query: 174 LYAMELKGFWMDVGQPRDFLKGMCLYLNSL--RQKRP 208
L A + GFW Q D L+ L L K P
Sbjct: 220 LMAYKHTGFW----QCMDTLRDK-QTLEELWNSGKAP 251
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 361
Score = 89.2 bits (222), Expect = 8e-20
Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)
Query: 70 EPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFI 127
E +L+ D I ++ ++ +H G + TI V +E S++GV+ +E G I F
Sbjct: 112 EYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFE 171
Query: 128 EKPQEFVSNKINA-------GMYIFNPSVLDRIEIKPTSIE-------KEIFPLMSKEKQ 173
EKP S G+YIF+ VL + + K+I P +E
Sbjct: 172 EKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGS 231
Query: 174 LYAMELKGFWMDVG--------------QPRDF----LKGMCLYLNSLRQKRPKLLKEGD 215
+ A G+W DVG F K +Y + K +
Sbjct: 232 VQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWP-IYTYNEFLPPAKFVDSDA 290
Query: 216 GIVGNVLVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
+V ++ + GC I G V+ +G V I G ++ S I+ D + + +
Sbjct: 291 QVVDSL-------VSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343
Query: 272 GCIIGWKCVVGQWVRMEN 289
II +G+ V + N
Sbjct: 344 NAIIDKNVRIGEGVVIGN 361
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 87.2 bits (217), Expect = 5e-19
Identities = 77/270 (28%), Positives = 117/270 (43%), Gaps = 49/270 (18%)
Query: 74 VLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQ 131
+L+ D I + ++ +HK + TI V +V EE S++G++ +E+ I F EKP+
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPK 181
Query: 132 EFVSNKINAGMYIFNPSVLDRI----EIKPTSIE---KEIFPLMSKE-KQLYAMELKGFW 183
SN + G+YIFN L E P S K + PL +E ++LYA KG+W
Sbjct: 182 NPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241
Query: 184 MDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG---------IVGNVLVDPTATIGP--- 231
DVG + SL + +LL+ + I P I
Sbjct: 242 KDVGT-----------IESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAK 290
Query: 232 --------GCRIGPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
GC + V + GV + G +K S I+ A + + +E IIG V
Sbjct: 291 VKNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAV 350
Query: 281 VGQWVRM----ENITVLGE-CIIGWKCVVG 305
+G V + E ITV+GE +IG V+G
Sbjct: 351 IGDGVIIGGGKEVITVIGENEVIGVGTVIG 380
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase.
Members of this family are the enzyme
glucose-1-phosphate cytidylyltransferase, also called
CDP-glucose pyrophosphorylase, the product of the rfbF
gene [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 78.3 bits (193), Expect = 2e-16
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 10/141 (7%)
Query: 54 TAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
T G L ++ L+ E F D + D K L++FH+ HGK+ T VT V+ P ++G
Sbjct: 105 TGGRLKRVREYLD--DEAFCFTYGDGVADIDIKALIAFHRKHGKKAT--VTAVQPPGRFG 160
Query: 114 VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQ 173
L E + SF EKP IN G ++ NPSVLD I+ T E+E +++ +
Sbjct: 161 A-LDLEGEQVTSFQEKPLG-DGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGE 218
Query: 174 LYAMELKGFWMDVGQPRDFLK 194
L A E GFW QP D L+
Sbjct: 219 LSAYEHSGFW----QPMDTLR 235
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 78.9 bits (194), Expect = 5e-16
Identities = 104/427 (24%), Positives = 180/427 (42%), Gaps = 77/427 (18%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ ++A + G R++++ + AEQ+E L G + F+ + + LGT
Sbjct: 37 MVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ------GSGVAFARQEQQLGTGDAFLS 90
Query: 61 AKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
L + VL D P + LV+ H+ G TI+ ++ + + YG ++
Sbjct: 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRG 150
Query: 119 EHGCIESFIEK----PQEFVSNKINAGMYIFN---PSVLDRIEIKPTSIEKEIFPLMSKE 171
G +E +E+ E + N+G+Y+F+ P + RI + E + L+
Sbjct: 151 ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLY 210
Query: 172 KQLYAMELKGFWMDVGQPRDFL-----KGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDP- 225
+ A +++ F + P + L G+ +LR++ + E G L DP
Sbjct: 211 RAGGA-QVRAF--KLSDPDEVLGANDRAGLAQLEATLRRR----INEAHMKAGVTLQDPG 263
Query: 226 TATIGPGCRIGPNVTIGPGVVIEG------GVCIKRSTILRD------AIVKSHSWLEGC 273
T I +G +VTI PGV++ G GV I +++ D A++K HS LEG
Sbjct: 264 TILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGA 323
Query: 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN-----------ITVLGEDVIV 322
+G VG + R+ TVLGE + +G +V +N + LG DV +
Sbjct: 324 EVGAGSDVGPFARLRPGTVLGEGV-----HIGNFVETKNARLDAGVKAGHLAYLG-DVTI 377
Query: 323 QDELYVNGGQVLP-------HKS-------IGSSLHMLGEDVIVQDELYVNGGQVLPHKS 368
E V G ++ H+S IGS+ ++ V V D ++ G +
Sbjct: 378 GAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRV-VGDAAFIAAGS-----A 431
Query: 369 IGSSVPE 375
+ VPE
Sbjct: 432 VHDDVPE 438
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 75.3 bits (186), Expect = 2e-15
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%)
Query: 6 IEALVEAGVREVILAVSYRAEQMED------EL--------------TVETKKLGISLVF 45
+E V AG+ ++I+ +ED EL V ++ +
Sbjct: 38 VEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY 97
Query: 46 SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICD---FPFKDLVSFHKNHGKEGTIV 102
+ EPLG + AK + EPF VL D + D K L+ ++ G I
Sbjct: 98 VRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIA 154
Query: 103 VTQV--EEPSKYGVV--------LYNEHGCIESFIEKP--QEFVSNKINAGMYIFNPSVL 150
V +V E+ SKYG+V ++ ++ +EKP +E SN G Y+ P +
Sbjct: 155 VEEVPPEDVSKYGIVKGEKIDGDVFK----VKGLVEKPKPEEAPSNLAIVGRYVLTPDIF 210
Query: 151 DRIEIKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
D +E EI + +E+ +YA +G D G +LK
Sbjct: 211 DILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLK 259
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 76.8 bits (190), Expect = 2e-15
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H ++++ +AG+ +++ V + AE++++ L ++ F+ + E LGT +
Sbjct: 32 MVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDRSE-------FALQEEQLGTGHAVMQ 84
Query: 61 AKDILNKSQEPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
A++ L + V+ D +I K+L+ FH+ H TI+ E P+ YG ++ N
Sbjct: 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRN 144
Query: 119 EHGCIESFIE----KPQEFVSNKINAGMYIFNPSVL 150
E+G +E +E +E +IN G Y F+ L
Sbjct: 145 ENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKAL 180
Score = 50.2 bits (121), Expect = 1e-06
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGWKCV 280
++DP +T I +V IG VIE GV IK + I D ++ S + IG
Sbjct: 254 IIDPESTY-----IDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVT 308
Query: 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324
+ +V+ E +G VG + + +V+GE+V + +
Sbjct: 309 ITN-------SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGN 345
Score = 30.2 bits (69), Expect = 2.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHS 268
I V++ IG C IGP I I GV I S I ++ V +
Sbjct: 274 IEPGVVIKGNTVIGEDCVIGPGSRI-VDSTIGDGVTITNSVIE-ESKVGDNV 323
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 74.1 bits (183), Expect = 3e-15
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H ++A G +++ V + AEQ++ L ++ F + E LGT +
Sbjct: 28 MLEHVLDAARALGPDRIVVVVGHGAEQVKKALA------NPNVEFVLQEEQLGTGHAVKQ 81
Query: 61 AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
A L + VL D+ I + L+ H+ G + T++ ++E+P+ YG ++ +
Sbjct: 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRD 141
Query: 119 EHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDR 152
+G + +E +E ++NAG+Y F+ L
Sbjct: 142 GNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFE 179
>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 450
Score = 74.6 bits (184), Expect = 1e-14
Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 76/330 (23%)
Query: 18 ILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNS 77
++ V ++AE++E L L F + LGT + +L + VLN
Sbjct: 48 LVIVGHQAEEVEQSLAHLPG-----LEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNG 102
Query: 78 DIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEK-- 129
D+ P + L++ H++ + T++ ++ P YG V + + +E +E
Sbjct: 103 DV----PLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGNNLVEQIVEDRD 158
Query: 130 --PQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEIF---------PLMSKE----- 171
P + +N+INAG+Y FN L + ++ + +KE + P+M+ E
Sbjct: 159 CTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVMAVEVEDYQ 218
Query: 172 --------KQLYAME------LKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGI 217
KQL E +K WM G + + E +
Sbjct: 219 EINGINDRKQLAQCEEILQNRIKEKWMLAGV-------------TFIDPASCTISETVEL 265
Query: 218 VGNVLVDPTATIGPGCRIGPNVTIGPGVVIEG-----GVCIKRSTILRDAIVKSHSWL-- 270
+V+++P + IG IGPG +IE V + S + D+ + +
Sbjct: 266 GPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVV-SDSQIGDGVKIGP 324
Query: 271 -----EGCIIGWKCVVGQWVRMENITVLGE 295
IG C +G +V ++ + LGE
Sbjct: 325 YAHLRPEAQIGSNCRIGNFVEIKK-SQLGE 353
>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl].
Length = 338
Score = 71.2 bits (175), Expect = 1e-13
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLE-G 272
GI ++DPTATIG IGPNV IG GVVI V I + I + + + +
Sbjct: 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPN 159
Query: 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENI--TVLGEDV 320
I V+G V + + V+G G+ WV++ I ++G+DV
Sbjct: 160 VTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDV 209
Score = 31.1 bits (71), Expect = 1.0
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHS 268
+ ++ I +IG V IG V I G + I + S
Sbjct: 248 HCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMAS 296
Score = 30.3 bits (69), Expect = 1.7
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
+G V IG IG N TI G + I + + + H IG
Sbjct: 199 QIGRV------IIGDDVEIGANTTIDRGAL--DDTVIGEGVKIDNLVQIGH----NVRIG 246
Query: 277 WKCVVGQWVRMENITVLGE-CIIG 299
C++ V + +G+ IIG
Sbjct: 247 EHCIIAGQVGIAGSVKIGKYVIIG 270
Score = 29.6 bits (67), Expect = 2.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 214 GDGIVG-NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL 259
D ++G V +D IG RIG + I V I G V I + I+
Sbjct: 223 DDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVII 269
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 70.9 bits (174), Expect = 2e-13
Identities = 88/363 (24%), Positives = 155/363 (42%), Gaps = 45/363 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + A EAG ++L V ++AE++ + + + F+ + E LGT +A
Sbjct: 33 MVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDGD-----VSFALQEEQLGTGHAVAC 87
Query: 61 AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
A L+ +L D+ + + +++ H+ G T++ ++E P YG ++ +
Sbjct: 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRD 147
Query: 119 EHGCIESFIEK----PQEFVSNKINAGMYIFNPSVL-DRI-EIKPTSIEKEIFPLMSKEK 172
G + +E+ P+E ++N+G+Y + L D I + + + E + L
Sbjct: 148 ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY-LTDIVA 206
Query: 173 QLYAMELKGFWMDVGQPRDFL-----KGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTA 227
A L+ V P + + + LR++ + L + G L+DP
Sbjct: 207 MAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELM----LAGVTLIDPET 262
Query: 228 T-IGPGCRIGPNVTIGPGVVIEG------------GVCIKRSTILRDAIVKSHSWLEGCI 274
T I G IG + TI PGV I G GV IK I D VK+ S LE +
Sbjct: 263 TYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSV 322
Query: 275 IGWKCVVGQWVRMENITVLGECI-IG-----WKCVVGQWVRMENITVLGEDVIVQDELYV 328
+G +G + T L + IG K V+G+ + ++T LG+ I ++ V
Sbjct: 323 VGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGDATIGRN---V 379
Query: 329 NGG 331
N G
Sbjct: 380 NIG 382
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The homotetrameric, feedback
inhibited short form is found in numerous bacterial
species that produce dTDP-L-rhamnose. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which dTDP-L-rhamnose
is not necessarily produced.
Length = 240
Score = 68.4 bits (168), Expect = 3e-13
Identities = 49/208 (23%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMED--ELTVETKKLGISLVFSHENEPLGTAGPL 58
M+ + + L+ AG+RE IL +S E + EL + LGI + ++ + +P G A
Sbjct: 33 MIYYPLSTLMLAGIRE-ILIISTP-EDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAF 90
Query: 59 ALAKDILNKSQEPF-FVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
+ ++ + +P +L +I ++ + T+ +V +P +YGVV +
Sbjct: 91 IIGEEFIGD--DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEF 148
Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPLMS---KEK 172
+E+G + S EKP++ SN G+Y ++ V + + +KP++ E EI + + ++
Sbjct: 149 DENGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKG 208
Query: 173 QLYA--MELKGFWMDVGQPRDFLKGMCL 198
+L + W+D G L+
Sbjct: 209 KLSVELLGRGFAWLDTGTHESLLEASNF 236
>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH)
domain of a group of proteins with similarity to
glucose-1-phosphate adenylyltransferase: Included in
this family are glucose-1-phosphate adenylyltransferase,
mannose-1-phosphate guanylyltransferase, and the
eukaryotic translation initiation factor eIF-2B
subunits, epsilon and gamma. Most members of this family
contains an N-terminal catalytic domain that resembles a
dinucleotide-binding Rossmann fold, followed by a LbH
fold domain with at least 4 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an
additional domain of unknown function at the C-terminus.
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity.
Length = 79
Score = 63.0 bits (154), Expect = 8e-13
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
L+ + IG I +V IG V I GV I S ++ + + ++S + IIG V+
Sbjct: 1 LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59
Query: 282 GQWVRMENITVLGE 295
G+ VR+ N+ ++G+
Sbjct: 60 GENVRVVNLCIIGD 73
Score = 41.8 bits (99), Expect = 2e-05
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 28/95 (29%)
Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVR------MENITVLG 294
IG VI IK S +IG +G V M+N+T+
Sbjct: 2 IGESTVIGENAIIKNS-----------------VIGDNVRIGDGVTITNSILMDNVTIGA 44
Query: 295 EC-----IIGWKCVVGQWVRMENITVLGEDVIVQD 324
IIG V+G+ VR+ N+ ++G+DV+V+D
Sbjct: 45 NSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 68.6 bits (168), Expect = 1e-12
Identities = 79/349 (22%), Positives = 129/349 (36%), Gaps = 49/349 (14%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML AL V V +RA+ V F + + LGT L
Sbjct: 35 MLRFVYRALRPLFGDNVWTVVGHRADM------VRAAFPDEDARFVLQEQQLGTGHALQC 88
Query: 61 AKDILNKSQ-EPFFVLNSD--IICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
A L + + V+N D ++ D + + G + + + +P YG V+
Sbjct: 89 AWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLK--EAAGADLAFMTLTLPDPGAYGRVV- 145
Query: 118 NEHGCIESFIE----KPQEF--VSNKINAGMYIFN----PSVLDRIEIKPTSIE---KEI 164
+G + + +E + ++NAG+Y S+L R+ S E ++
Sbjct: 146 RRNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDL 205
Query: 165 FPLMSKEKQ----LYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIV-- 218
L E + E + V P + ++ L LR + + E ++
Sbjct: 206 VGLAVAEGMNVLGVNCGEDPNL-LGVNTPAELVRSEEL----LRARIVEKHLESGVLIHA 260
Query: 219 -GNVLVDPTATIGPG------CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
+V + P ATI PG C I I G VI ++ + + A + S S LE
Sbjct: 261 PESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLE 320
Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
G +G C VG + R+ VL E VG +V M+ VLG+
Sbjct: 321 GAEVGDGCSVGPYARLRPGAVLEE-----GARVGNFVEMKK-AVLGKGA 363
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 64.9 bits (159), Expect = 4e-12
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L QIE L EAG+ ++++ Y+ EQ+E+ L K I V++ + L L
Sbjct: 31 LLERQIETLKEAGIDDIVIVTGYKKEQIEELL---KKYPNIKFVYNPDYAETNNIYSLYL 87
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
A+D L+ E F +L D++ D ++ + + I+V + + + V +
Sbjct: 88 ARDFLD---EDFLLLEGDVVFD---PSILERLLSSPADNAILVDKKTKEWEDEYVKDLDD 141
Query: 121 GCIESFIEKPQEFVSNKINA---GMYIFNPSVLDRI 153
+ I + + I G+ F+P DR+
Sbjct: 142 AGVLLGIISKAKNLEE-IQGEYVGISKFSPEDADRL 176
>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate
uridyltransferase (GlmU), C-terminal left-handed
beta-helix (LbH) acetyltransferase domain: GlmU is also
known as UDP-N-acetylglucosamine pyrophosphorylase. It
is a bifunctional bacterial enzyme that catalyzes two
consecutive steps in the formation of
UDP-N-acetylglucosamine (UDP-GlcNAc), an important
precursor in bacterial cell wall formation. The two
enzymatic activities, uridyltransferase and
acetyltransferase, are carried out by two independent
domains. The C-terminal LbH domain possesses the
acetyltransferase activity. It catalyzes the
CoA-dependent acetylation of GlcN-1-phosphate to
GlcNAc-1-phosphate. The LbH domain contains 10 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The
acetyltransferase active site is located at the
interface between two subunits of the active LbH trimer.
Length = 193
Score = 64.0 bits (157), Expect = 5e-12
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
I G+V + I PG + IG VI IK STI ++K+ S +EG +IG
Sbjct: 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIG 71
Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
VG + + TVLGE +G +V ++ + +GE
Sbjct: 72 NGATVGPFAHLRPGTVLGE-----GVHIGNFVEIKK-STIGE 107
Score = 29.7 bits (68), Expect = 1.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ AT+GP + P +G GV I V IK+STI + S+L IG +G
Sbjct: 70 IGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIG 129
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 62.9 bits (154), Expect = 3e-11
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 40/226 (17%)
Query: 6 IEALVEAGVREVILAVSYRAEQMED------EL---------TVETKKL-----GISLVF 45
+E V AG+ E+++ +ED EL +++ +++ F
Sbjct: 42 VEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISF 101
Query: 46 SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPF---KDLVSFHKNHGKEGTIV 102
+ EPLG + AK + EPF VL D + D K ++ ++ G I
Sbjct: 102 VRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIG 158
Query: 103 VTQV--EEPSKYGVV-----LYNEHGCIESFIEKPQ--EFVSNKINAGMYIFNPSVLDRI 153
V +V E+ SKYGV+ + ++ +EKP+ E SN G Y+ P + D +
Sbjct: 159 VEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDIL 218
Query: 154 EIKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
E EI + K++ + A +G D G ++K
Sbjct: 219 EETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIK 264
>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase; Provisional.
Length = 343
Score = 63.2 bits (155), Expect = 4e-11
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 30/118 (25%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL-EGCIIGWKCVV 281
+ P+A I P +IG V+IGP VI GV I ++ + + + +G IG C +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGV-----VIGAGAVIGDGVKIGADCRL 157
Query: 282 GQWVRMENITVLGECIIGWKCVV-----------------GQWVRMENI--TVLGEDV 320
N+T+ IG + ++ G WV++ + ++G+DV
Sbjct: 158 HA-----NVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV 210
Score = 44.7 bits (107), Expect = 5e-05
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
V++ A IG G +IG + + V I V I I+ HS G +IG
Sbjct: 136 GVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVII-------HS---GAVIG 182
>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 260
Score = 58.5 bits (142), Expect = 9e-10
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 6 IEALVEAGVREVILAVSYRAEQMED------ELTVETKKLG--------------ISLVF 45
+E VEAG+ ++++ +ED EL + +K ++ +
Sbjct: 38 VEEAVEAGIEDILIVTGRGKRSIEDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFY 97
Query: 46 SHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP---FKDLVSFHKNHGKEGTIV 102
+ E G + A+ + EPF V+ D IC K ++ ++ +G I
Sbjct: 98 VRQKEQKGLGHAVLCAEPFV--GDEPFAVILGDDICVSEEPVLKQMIDLYEKYGCS-IIA 154
Query: 103 VTQV--EEPSKYGVV----LYNEHGCIESFIEKP--QEFVSNKINAGMYIFNPSVLDRIE 154
V +V EE SKYGV+ + I+ +EKP +E SN G Y+ P + + +E
Sbjct: 155 VEEVPKEEVSKYGVIDGEGVEEGVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLE 214
Query: 155 IKPTSIEKEI-----FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
P EI + K++++YA + KG D G ++K
Sbjct: 215 ETPPGKGGEIQLTDALRKLLKKERVYAYKFKGKRYDCGSKLGYIK 259
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA;
Provisional.
Length = 292
Score = 58.1 bits (140), Expect = 2e-09
Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L + + P G A +
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFII 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
++ + + VL +I L+ N T+ V +P +YGVV ++++
Sbjct: 96 GEEFIG-GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSI-EKEIFPL----MSKEKQL 174
G S EKP + SN G+Y ++ V++ + +KP++ E EI + M + +
Sbjct: 155 GTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214
Query: 175 YAMELKGF-WMDVGQPRDFLKG 195
AM +G+ W+D G + ++
Sbjct: 215 VAMMGRGYAWLDTGTHQSLIEA 236
>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
N-acyltransferase. This model describes LpxD, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species. This
protein represents the third step from
UDP-N-acetyl-D-glucosamine. The group added at this step
generally is 14:0(3-OH) (myristate) but may vary; in
Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 324
Score = 58.1 bits (141), Expect = 2e-09
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-EGC 273
GI +VDP+A IG G IGPNV IG GV I V I I D ++ S +
Sbjct: 93 GIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNV 152
Query: 274 IIGWKCVVGQWVRMENITVLGECIIGW-KCVVGQWVRMENI--TVLGEDV 320
+I + +G+ V + + V+G G+ G V++ I ++ +DV
Sbjct: 153 VIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDV 202
Score = 38.4 bits (90), Expect = 0.004
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
A I P + P+ IG GV I V I + E IIG V+G
Sbjct: 88 PKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIG----------ENVIIGPGVVIG 137
Query: 283 QWVRM-ENITVLGECIIGWKCVVGQWVRMENITVLGED 319
V + + + +I + +G+ V + + V+G D
Sbjct: 138 DDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175
>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase
(LpxD): The enzyme catalyzes the transfer of
3-hydroxymyristic acid or 3-hydroxy-arachidic acid,
depending on the organism, from the acyl carrier protein
(ACP) to UDP-3-O-acyl-glucosamine to produce
UDP-2,3-diacyl-GlcNAc. This constitutes the third step
in the lipid A biosynthetic pathway in Gram-negative
bacteria. LpxD is a homotrimer, with each subunit
consisting of a novel combination of an N-terminal
uridine-binding domain, a core lipid-binding left-handed
parallel beta helix (LbH) domain, and a C-terminal
alpha-helical extension. The LbH domain contains 9
turns, each containing three imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Length = 205
Score = 56.3 bits (137), Expect = 3e-09
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
NV + P A IG G IG V IGPGVVI GV I ++ H I C
Sbjct: 7 NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVI-------HP---NVTIYEGC 56
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENI--TVLGEDV 320
++G V + + V+G G+ G WV++ + ++G+DV
Sbjct: 57 IIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV 99
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 56.0 bits (136), Expect = 1e-08
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
IG I PNV GPGV + G A++ + S LEG +G VG + R+
Sbjct: 270 VIGRDVVIEPNVVFGPGVTVASG-----------AVIHAFSHLEGAHVGEGAEVGPYARL 318
Query: 288 ENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIG 340
LGE VG +V ++N LGE V Y+ + +IG
Sbjct: 319 RPGAELGE-----GAKVGNFVEVKN-AKLGEGAKVNHLTYIGDATIGAGANIG 365
>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved
in the biosynthesis of glycogen or starch. ADP-glucose
pyrophosphorylase (glucose-1-phosphate
adenylyltransferase) catalyzes a very important step in
the biosynthesis of alpha 1,4-glucans (glycogen or
starch) in bacteria and plants: synthesis of the
activated glucosyl donor, ADP-glucose, from
glucose-1-phosphate and ATP. ADP-glucose
pyrophosphorylase is a tetrameric allosterically
regulated enzyme. While a homotetramer in bacteria, in
plant chloroplasts and amyloplasts, it is a
heterotetramer of two different, yet evolutionary
related, subunits. There are a number of conserved
regions in the sequence of bacterial and plant
ADP-glucose pyrophosphorylase subunits. It is a
subfamily of a very diverse glycosy transferase family
2.
Length = 200
Score = 53.7 bits (130), Expect = 2e-08
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 39/130 (30%)
Query: 63 DILNKS-QEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
D + +S E +L+ D I + +++++ FH G + T+V
Sbjct: 104 DYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVY------------------ 145
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVL-DRIE--IKPTSIE--KEIFPLMSKEKQLYA 176
K + G+YIF+ +L + +E S + K+I P M K+ ++YA
Sbjct: 146 ---------------KASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYA 190
Query: 177 MELKGFWMDV 186
E G+W D+
Sbjct: 191 YEFNGYWADI 200
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 52.5 bits (127), Expect = 1e-07
Identities = 65/288 (22%), Positives = 102/288 (35%), Gaps = 84/288 (29%)
Query: 85 FKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHGCIESFIEKP--QEFVSNKI-- 138
+ D V H+ G + TI V+E S +G++ ++ G I F EKP E + ++
Sbjct: 138 YMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDT 197
Query: 139 -----------------NAGMYIFNPSVLDRI--EIKPTSIE--KEIFPLMSKEK-QLYA 176
+ G+Y+F VL ++ PT+ + EI P KE + A
Sbjct: 198 TVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257
Query: 177 MELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDG-------------------- 216
G+W D+G + F Y +L L K+
Sbjct: 258 YLFDGYWEDIGTIKSF------YEANL-----ALTKQPPKFSFYDPDAPIYTSPRFLPPS 306
Query: 217 -IVGNVLVDPTATIGPGCR----------IGPNVTIGPGVVIEGGVCIKRSTILRDAIVK 265
I + D + I GC +G IG GV IE V + + +
Sbjct: 307 KIEDCRITD--SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIA 364
Query: 266 SHSWLEGCI-IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN 312
EG + IG +G EN T + II +G+ V + N
Sbjct: 365 -SLLAEGKVPIG----IG-----EN-TKIRNAIIDKNARIGKNVVIIN 401
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 52.1 bits (126), Expect = 2e-07
Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 64/244 (26%)
Query: 85 FKDLVSFHKNHGKEGTI--VVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVS-----NK 137
+ +V FH G T+ + EE S +GV+ + G I F+EKP + ++
Sbjct: 133 PRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDE 192
Query: 138 INAGM--YIFNPSVL----DRIEIKPTSIE---KEIFPLMSKEKQLYAM----------- 177
A M Y+F L R S +I P + + + Y
Sbjct: 193 ALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGAT 252
Query: 178 -ELKGFWMDVG---------------QPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNV 221
+G+W DVG P LY N ++ P I +
Sbjct: 253 ERDRGYWRDVGTIDAYYDAHMDLLSVHPV-----FNLY-N---REWP--------IYTSS 295
Query: 222 LVDPTATI---GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWK 278
P A G + + G +I G ++ S + + +V+S + +E ++
Sbjct: 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIISGAT-VRNSVLSPNVVVESGAEVEDSVLMDG 354
Query: 279 CVVG 282
+G
Sbjct: 355 VRIG 358
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 52.2 bits (126), Expect = 2e-07
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 26/134 (19%)
Query: 85 FKDLVSFHKNHGKEGTIVVTQVEE--PSKYGVVLYNEHGCIESFIEKPQE---------- 132
++ V H+ G + T+ V V+E S +G++ ++ G I F EKP+
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDT 191
Query: 133 --FVSNKINA---------GMYIFNPSVL-DRIEIKPTSIE--KEIFPLMSKEKQLYAME 178
+ A G+Y+F+ VL D + P + KEI P ++ ++ +
Sbjct: 192 SRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYL 251
Query: 179 LKGFWMDVGQPRDF 192
G+W D+G F
Sbjct: 252 FDGYWEDIGTIEAF 265
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis [Energy metabolism, Biosynthesis
and degradation of polysaccharides].
Length = 369
Score = 51.6 bits (124), Expect = 3e-07
Identities = 68/319 (21%), Positives = 136/319 (42%), Gaps = 34/319 (10%)
Query: 5 QIEALVEAGVREVILAVSYRAEQ-MEDELT------VETKKLGISLVFSHENEPLGTAGP 57
+ +V AG+R V + + Q + D L + K+ G+ + ++ + L G
Sbjct: 40 PLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGK 99
Query: 58 LALAK--DILNKSQEPFFV-LNSDIICDFPFKDLVSFHKNHGKEGTIV---VTQVEEPSK 111
++ + L +S + V LNS ++C+ K ++ +H+ GK+ T+V V +
Sbjct: 100 RYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEY 159
Query: 112 YGVVLYNEHGCIESF--IEKPQEFVSNKINAGMYIFNPSVLDRIEI--------KPTSIE 161
++ ++E G ++S P+E + N + I+ S IE+ K TS+E
Sbjct: 160 DTILRFDESGKVKSIGQNLNPEE----EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215
Query: 162 KEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLK-EGDGIVGN 220
+ I + + + A E G+ ++ + + K L+ Q L I
Sbjct: 216 ELIRENLKELN-INAYEYTGYLANINSVKSYYKANMDLLDP--QNFQSLFYSSQGPIYTK 272
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
V +P ++ N + G +IEG V + S + R V + ++ CII + V
Sbjct: 273 VKDEPPTYYAENSKV-ENSLVANGCIIEGKV--ENSILSRGVHVGKDALIKNCIIMQRTV 329
Query: 281 VGQWVRMENITVLGECIIG 299
+G+ +EN+ + + +I
Sbjct: 330 IGEGAHLENVIIDKDVVIE 348
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 50.5 bits (121), Expect = 7e-07
Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 52/295 (17%)
Query: 47 HENEPLGTAGPLALAKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHGKEGTIVVT 104
+ E LGTA + A+D + + +L D+ I + K L+ H G + TI+V
Sbjct: 68 LQEEQLGTAHAVMCARDFIEPG-DDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVA 126
Query: 105 QVEEPSKYGVVLYNE--HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSI 160
+E+P+ YG ++ + + +E +E +IN G+Y+F+ L + +IK +
Sbjct: 127 DLEDPTGYGRIIRDGGKYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENA 186
Query: 161 EKE-----IFPLMSKEKQLYA---MELKGF--WMDVGQPRDFLKGMCLYLNSLRQKRPKL 210
+ E K + + +E+ G + + L+ + +L
Sbjct: 187 KGEYYLTDAVNFAEKVRVVKTEDLLEITGVNTRIQLAWLEKQLR---------MRILEEL 237
Query: 211 LKEGDGIVGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
++ G I +DP T I IG + I P IEG ++ I D + +
Sbjct: 238 MENGVTI-----LDPNTTYIHYDVEIGMDTIIYPMTFIEG-----KTRIGEDCEIGPMTR 287
Query: 270 LEGCIIGWKCVVGQWVRMENITVL-GEC---IIGWKCVVGQWVRMENITVLGEDV 320
+ C IG N+ ++ EC +I VG + R+ TVL + V
Sbjct: 288 IVDCEIG-----------NNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSV 331
>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 255
Score = 49.3 bits (118), Expect = 1e-06
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTIL-RDAIVKSHSWL-EGCIIGWKC 279
++ PTA I P ++G V IGP VI V I T + A++ + + + I
Sbjct: 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGA 60
Query: 280 VVGQWVRMENITVLGE---CIIGWKCVVGQWV------RMENITVLGED 319
VVG ++ T GE IG + V+ + V + +T +G D
Sbjct: 61 VVGDEP--QDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGND 107
Score = 41.5 bits (98), Expect = 3e-04
Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 18/161 (11%)
Query: 211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSH--- 267
L G I ++ IG G IGP+ I I I + ++ D
Sbjct: 14 LGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKG 73
Query: 268 --SWLE---GCIIGWKCVVGQWVRMENITVLG-ECI------IGWKCVVGQWVRMENITV 315
S LE +I + + + +T +G + + + C +G V + N +
Sbjct: 74 EESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGAL 133
Query: 316 LGEDVIVQDELYVNGGQVLPHK--SIGSSLHMLGEDVIVQD 354
L V V D + G L H+ IG+ M G I +D
Sbjct: 134 LAGHVTVGDRAII-SGNCLVHQFCRIGALAMMAGGSRISKD 173
>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT),
Left-handed parallel beta-Helix (LbH) domain; This group
is composed of mostly uncharacterized proteins
containing an N-terminal helical subdomain followed by a
LbH domain. The alignment contains 6 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Proteins containing hexapeptide repeats are often
enzymes showing acyltransferase activity. A few members
are identified as NeuD, a sialic acid (Sia)
O-acetyltransferase that is required for Sia synthesis
and surface polysaccharide sialylation.
Length = 197
Score = 48.2 bits (116), Expect = 1e-06
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LR+K + L L+ P+A + P IG I G VI I + I+
Sbjct: 66 NKLRRKLAEKLLAAGYRFAT-LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVII- 123
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVR-MENITVLGECIIGWKCVVGQWVR---MENITVL 316
G +IG CV+G +V + + G IG +G ++ +T+
Sbjct: 124 --------NT-GAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG--AGATIIQGVTI- 171
Query: 317 GEDVIV 322
G I+
Sbjct: 172 GAGAII 177
Score = 43.6 bits (104), Expect = 5e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
NV+++ A IG C IG V I PGVV+ GGV I + + I A + ++G IG
Sbjct: 120 NVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI-----IQGVTIGAG 174
Query: 279 CVVG 282
++G
Sbjct: 175 AIIG 178
Score = 33.6 bits (78), Expect = 0.11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD 261
G V + A IG G I VTIG G +I G + + +D
Sbjct: 149 GGVTIGEGAFIGAGATIIQGVTIGAGAIIGAG-----AVVTKD 186
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma, subunits
of eukaryotic translation initiators, is a subfamily of
glycosyltranferase 2 and is predicted to have
glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes such
as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 216
Score = 48.4 bits (116), Expect = 1e-06
Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK-----KLGISLVFSHENEPLGTA 55
++ + +E L +AGV EV + ++ + + L K+ + ++ S E G A
Sbjct: 33 LIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDA 92
Query: 56 GPLALAKDILNKSQEPFFVLNSDIICDFPFKDLV----SFHKNHGKEGTIVVTQVEEP-- 109
L L +DI + F +L+ D++ + P +L+ KN T+ V P
Sbjct: 93 --LRL-RDIRGLIRSDFLLLSCDLVSNIPLSELLEERRKKDKNA--IATLTVLLASPPVS 147
Query: 110 ------------------SKYGVVLYNEHGCIESFIEKPQ----------EFVSNKINAG 141
++ ++L+ E E + ++ ++
Sbjct: 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCH 207
Query: 142 MYIFNPSVL 150
+YI +P VL
Sbjct: 208 IYICSPDVL 216
>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
O-acetyltransferase NeuD family. This family of
proteins includes the characterized NeuD sialic acid
O-acetyltransferase enzymes from E. coli and
Streptococcus agalactiae (group B strep). These two are
quite closely related to one another, so extension of
this annotation to other members of the family in
unsupported without additional independent evidence. The
neuD gene is often observed in close proximity to the
neuABC genes for the biosynthesis of
CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD
sequences from these organisms were used to construct
the seed for this model. Nevertheless, there are
numerous instances of sequences identified by this model
which are observed in a different genomic context
(although almost universally in exopolysaccharide
biosynthesis-related loci), as well as in genomes for
which the biosynthesis of sialic acid (SA) is
undemonstrated. Even in the cases where the association
with SA biosynthesis is strong, it is unclear in the
literature whether the biological substrate is SA
iteself, CMP-SA, or a polymer containing SA. Similarly,
it is unclear to what extent the enzyme has a preference
for acetylation at the 7, 8 or 9 positions. In the
absence of evidence of association with SA, members of
this family may be involved with the acetylation of
differring sugar substrates, or possibly the delivery of
alternative acyl groups. The closest related sequences
to this family (and those used to root the phylogenetic
tree constructed to create this model) are believed to
be succinyltransferases involved in lysine biosynthesis.
These proteins contain repeats of the bacterial
transferase hexapeptide (pfam00132), although often
these do not register above the trusted cutoff.
Length = 193
Score = 46.7 bits (112), Expect = 4e-06
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LR++ + LK G L+ P+A + P IG I G VI V I + I+
Sbjct: 60 NKLRRRLVEKLKA-LGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIIN 118
Query: 261 -------DAIVKSHSWLE-GCIIGWKCVVGQ--WVRMENITVLGECIIGWKCVVG 305
D ++ + + G + V+G+ ++ T++ IG VVG
Sbjct: 119 TGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGA-GATIIQGVTIGAGAVVG 172
Score = 27.5 bits (62), Expect = 9.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 214 GDGIVG-NVLVDPTATIGPGCRIGPNVTIGPG-VVI 247
G ++G V + ATI G IG +G G VV
Sbjct: 143 GGVVIGEGVFIGAGATIIQGVTIGAGAVVGAGAVVT 178
>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 47.4 bits (114), Expect = 4e-06
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWK 278
+ PTA + PG +IG NV IGP VI V I T++ SH ++G IG
Sbjct: 2 MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVI-----GSHVVIDGHTTIGKN 56
Query: 279 CVVGQ 283
+
Sbjct: 57 NRIFP 61
Score = 37.0 bits (87), Expect = 0.011
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
GDG I +V++D TIG RI P + IG I V I
Sbjct: 36 GDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTI 95
Query: 254 KRSTILRDA--IVKSHSWL-EGCIIGWKCVVGQWVRMEN-ITVLGECIIGWKCVVG---- 305
R T+ + ++ L + CVVG V + N T+ G +G ++G
Sbjct: 96 NRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTA 155
Query: 306 --QWVR 309
Q+VR
Sbjct: 156 VHQFVR 161
Score = 32.4 bits (75), Expect = 0.34
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 223 VDPTATIGPGCRIGPNV------TIGPGVVIEGGVCI 253
+ P IG G IG +V TIG I I
Sbjct: 29 IGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65
>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate
thymidylyltransferase, C-terminal Left-handed parallel
beta-Helix (LbH) domain: Proteins in this family show
simlarity to glucose-1-phosphate adenylyltransferases in
that they contain N-terminal catalytic domains that
resemble a dinucleotide-binding Rossmann fold and
C-terminal LbH fold domains. Members in this family are
predicted to be glucose-1-phosphate
thymidylyltransferases, which are involved in the
dTDP-L-rhamnose biosynthetic pathway.
Glucose-1-phosphate thymidylyltransferase catalyzes the
synthesis of deoxy-thymidine di-phosphate
(dTDP)-L-rhamnose, an important component of the cell
wall of many microorganisms. The C-terminal LbH domain
contains multiple turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 163
Score = 45.7 bits (109), Expect = 5e-06
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 210 LLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
+++ G I G V++ IGP I +G G V+ V +K S I+ V ++
Sbjct: 25 IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNY 84
Query: 270 LEGCIIGWKCVVG 282
+ ++G +G
Sbjct: 85 VGDSVLGENVNLG 97
Score = 42.6 bits (101), Expect = 7e-05
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 33/119 (27%)
Query: 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVVGQWVRMENITV 292
+ VTI V I AIV+S +++EG IIG C +G N +
Sbjct: 7 TVEEGVTIKGPVWIG-----------EGAIVRSGAYIEGPVIIGKGCEIGP-----NAYI 50
Query: 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKS-IGSSLHMLGEDV 350
G ++G CVVG V ++N ++ +G +V PH + +G S+ LGE+V
Sbjct: 51 RGYTVLGDGCVVGNSVEVKNSIIM------------DGTKV-PHLNYVGDSV--LGENV 94
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
EG I G V + A + G I V IG G I I+ T+L +G
Sbjct: 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVL----------GDG 59
Query: 273 CIIGWKCVVGQWVRMENITV-----LGECIIGWKCVVG 305
C++G V + M+ V +G+ ++G +G
Sbjct: 60 CVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLG 97
Score = 30.6 bits (70), Expect = 0.68
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
A IG G + G NV++ PGV I G + ++R
Sbjct: 130 AIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR 163
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. Alternate name: dTDP-D-glucose synthase
homotetramer This model describes a tightly conserved
but broadly distributed subfamily (here designated as
short form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 286
Score = 46.6 bits (111), Expect = 8e-06
Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 8/194 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + + +L + + G++L ++ + P G A +
Sbjct: 32 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFII 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+D + VL +I DL+ T+ QV +P +YGVV ++ +
Sbjct: 92 GEDFIG-GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN 150
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKPTSI-EKEIFPL--MSKEKQLYA 176
G S EKP + SN G+Y ++ V++ ++KP++ E EI L + E+ +
Sbjct: 151 GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLS 210
Query: 177 MEL--KGF-WMDVG 187
+EL +G+ W+D G
Sbjct: 211 VELLGRGYAWLDTG 224
>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine
O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins
in this family catalyze the transfer of
(R)-3-hydroxymyristic acid from its acyl carrier protein
thioester to UDP-GlcNAc. It is the first enzyme in the
lipid A biosynthetic pathway and is also referred to as
LpxA. Lipid A is essential for the growth of Escherichia
coli and related bacteria. It is also essential for
maintaining the integrity of the outer membrane.
UDP-GlcNAc acyltransferase is a homotrimer of
left-handed parallel beta helix (LbH) subunits. Each
subunit contains an N-terminal LbH region with 9 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
and a C-terminal alpha-helical region.
Length = 254
Score = 46.3 bits (111), Expect = 1e-05
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-AIVKSHSWL-EGCIIGWKCV 280
+ PTA + PG +IG NV IGP VI V I T++ ++ + + + I
Sbjct: 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFAS 61
Query: 281 VG 282
+G
Sbjct: 62 IG 63
Score = 34.7 bits (81), Expect = 0.056
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
GDG I +V++D TIG RI P + IG I V I
Sbjct: 33 GDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTI 92
Query: 254 KRSTILRDAIVK--SHSWL-EGCIIGWKCVVGQWVRMENITVL-GEC------IIGWKCV 303
R T + + +++ L + CV+G V + N L G IIG
Sbjct: 93 HRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSA 152
Query: 304 VGQWVR 309
V Q+ R
Sbjct: 153 VHQFCR 158
>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein].
Length = 260
Score = 45.7 bits (109), Expect = 1e-05
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWK 278
+ PTA I PG IG +V IGP +I V I T+L KSH +EG IG
Sbjct: 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVL-----KSHVVVEGHTTIGRN 57
Query: 279 CVVGQ 283
+
Sbjct: 58 NRIFP 62
Score = 28.7 bits (65), Expect = 4.8
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 28/127 (22%)
Query: 211 LKEGDGIVGNVLVDPTATIGPGCRIGP------------------NVTIGPGVVIEGGVC 252
+ +G + +V+V+ TIG RI P + IG I V
Sbjct: 36 IGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVT 95
Query: 253 IKRSTILRDAIVK--SHSWL-EGCIIGWKCVVGQWVRMEN-------ITVLGECIIGWKC 302
I R T+ + + ++ + + CV+G + N + V IIG
Sbjct: 96 IHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155
Query: 303 VVGQWVR 309
V Q+VR
Sbjct: 156 AVHQFVR 162
>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six
repeats).
Length = 36
Score = 40.8 bits (97), Expect = 2e-05
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEG 249
NVL+ P IG G IG NV IG GVVI G
Sbjct: 7 NVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
Score = 36.6 bits (86), Expect = 5e-04
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKR 255
++ IGP IG V IG V+I GV I
Sbjct: 1 GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36
Score = 31.6 bits (73), Expect = 0.033
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 232 GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
G IG NV IGP VVI GGV I + I+ + + G
Sbjct: 1 GTVIGENVLIGPNVVIGGGV-----IIGDNVIIGAGVVIGG 36
Score = 29.3 bits (67), Expect = 0.28
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIG 242
I NV++ IG IG V IG
Sbjct: 10 IGPNVVIGGGVIIGDNVIIGAGVVIG 35
>gnl|CDD|188173 TIGR01852, lipid_A_lpxA,
acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase. This model describes LpxA, an enzyme
for the biosynthesis of lipid A, a component
oflipopolysaccharide (LPS) in the outer membrane outer
leaflet of most Gram-negative bacteria. Some differences
are found between lipid A of different species, but this
protein represents the first step (from
UDP-N-acetyl-D-glucosamine) and appears to be conserved
in function. Proteins from this family contain many
copies of the bacterial transferase hexapeptide repeat
(pfam00132) [Cell envelope, Biosynthesis and degradation
of surface polysaccharides and lipopolysaccharides].
Length = 254
Score = 44.2 bits (105), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
+ PTA I PG IG NV IGP ++ GV I +KSH + G
Sbjct: 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGV-----KIGDGVELKSHVVILG 45
Score = 37.6 bits (88), Expect = 0.007
Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST-ILRDAIV------KSHSWLE- 271
NV + P +GPG +IG V + VVI G I T I A++ + +
Sbjct: 16 NVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGEKT 75
Query: 272 GCIIGWKCVVGQWVRMENITVLGE--------------CIIGWKCVVGQWVRMENITVLG 317
IIG + ++V + T G I CVVG V + N L
Sbjct: 76 RLIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLA 135
Query: 318 EDVIVQDELYVN-GGQVLPH 336
V V D Y GG V H
Sbjct: 136 GHVEVGD--YAIIGGLVAVH 153
Score = 34.9 bits (81), Expect = 0.051
Identities = 33/126 (26%), Positives = 44/126 (34%), Gaps = 30/126 (23%)
Query: 214 GDGIV--GNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
GDG+ +V++ TIG G RI P + IG I V I
Sbjct: 32 GDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGEKTRLIIGDNNTIREFVTI 91
Query: 254 KRSTILRDA--IVKSH-SWLEGCIIGWKCVVGQWVRMENITVLG-------ECIIGWKCV 303
R T + ++ + I CVVG V + N L IIG
Sbjct: 92 NRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVA 151
Query: 304 VGQWVR 309
V Q+VR
Sbjct: 152 VHQFVR 157
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in the
capsule biosynthetic locus of Pasteurella multocida. Its
deducted product is likely involved in the biosynthesis
of the polysaccharide capsule, which is found on surface
of a wide range of bacteria. It is a subfamily of
Glycosyltransferase Family GT2, which includes diverse
families of glycosyltransferases with a common GT-A type
structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. These are
enzymes that catalyze the transfer of sugar moieties
from activated donor molecules to specific acceptor
molecules, forming glycosidic bonds.
Length = 231
Score = 43.8 bits (104), Expect = 5e-05
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGI--SLVFSHENEPLGTAGPL 58
M+ IE+L + I R E E+ KL + V + E LG A +
Sbjct: 31 MIEWVIESLAKIFDSRFIFIC--RDEHNTKFHLDESLKLLAPNATVVELDGETLGAACTV 88
Query: 59 ALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
LA D+++ + +P + N D I + ++ + +G ++ P ++ V +
Sbjct: 89 LLAADLID-NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHP-RWSYVKLD 146
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIF 145
E+G + EK E +S+ AG+Y F
Sbjct: 147 ENGRVIETAEK--EPISDLATAGLYYF 171
>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by
uncharacterized proteins with similarity to the protein
product of the E. coli paaY gene, which is part of the
paa gene cluster responsible for phenylacetic acid
degradation. Proteins in this group are expected to
adopt the left-handed parallel beta-helix (LbH)
structure. They contain imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Similarity to gamma carbonic anhydrase and
Ferripyochelin Binding Protein (FBP) may suggest metal
binding capacity.
Length = 155
Score = 42.4 bits (100), Expect = 8e-05
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 25/103 (24%)
Query: 223 VDPTATIGPGCRIGPNVTIGPG---------VVIEGGV-----CIKRSTILRDAIVKSHS 268
V PTA + IG N IGP +VI G C+ +D +++ +
Sbjct: 9 VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENG 68
Query: 269 W------LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
L GC IG +VG N V+ +IG + +VG
Sbjct: 69 HIGHGAILHGCTIGRNALVGM-----NAVVMDGAVIGEESIVG 106
>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH)
domain: The alignment contains 5 turns, each containing
three imperfect tandem repeats of a hexapeptide repeat
motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity, however, some subfamilies in
this hierarchy also show activities related to ion
transport or translation initiation. Many are trimeric
in their active forms.
Length = 78
Score = 40.3 bits (95), Expect = 9e-05
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CII 275
I V + P A I IG NV IGPG VI I+ + + +I
Sbjct: 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG---PNEKNPTIIGDNVEIGANAVI 59
Query: 276 GWKCVVGQWVRMENITVLG 294
+G + V+
Sbjct: 60 HGGVKIGDNAVIGAGAVVT 78
Score = 31.8 bits (73), Expect = 0.092
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 233 CRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGC-----IIGWKCVVGQWVR 286
IG V I P VI G V I I A++ + IIG +G
Sbjct: 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVI--GAATGPNEKNPTIIGDNVEIG---- 54
Query: 287 MENITVLGECIIGWKCVVG 305
N + G IG V+G
Sbjct: 55 -ANAVIHGGVKIGDNAVIG 72
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETK---KLGISLVFSHENEPLGTAGP 57
M+ + ++ L +AG +VI+ V + K + V +E +GTA
Sbjct: 33 MIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADS 92
Query: 58 LALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSK 111
L + I K ++ F VL+ D+I D P +LV H++H T+++ S+
Sbjct: 93 L---RHIRKKIKKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSE 143
>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine
patch superfamily [General function prediction only].
Length = 176
Score = 41.0 bits (97), Expect = 2e-04
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII---- 275
V P+AT+ RIG V+I PG V+ G V + I + +G +I
Sbjct: 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNI-----QDGVVIHADP 69
Query: 276 GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
G+ +G V + + V+ C IG ++G + + V+G+ IV V G+ +P
Sbjct: 70 GYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIP 129
Query: 336 HKSI 339
S+
Sbjct: 130 GGSL 133
Score = 37.2 bits (87), Expect = 0.006
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 217 IVGNVLVDPTATIGPGCRIG---PNVTIGPGVVIEGGVCIK-----RSTILRDAIVKSHS 268
++G+V + +I PG + + IG I+ GV I TI D + +
Sbjct: 26 VIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGA 85
Query: 269 WLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+ GC IG ++G M TVL +IG +VG
Sbjct: 86 VVHGCTIGDNVLIG----M-GATVLDGAVIGDGSIVG 117
>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B epsilon subunit contains
an N-terminal domain that resembles a
dinucleotide-binding Rossmann fold, a central LbH domain
containing 4 turns, each containing three imperfect
tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of
unknown function that is present in eIF-4 gamma, eIF-5,
and eIF-2B epsilon. The epsilon and gamma subunits form
the catalytic subcomplex of eIF-2B, which binds eIF2 and
catalyzes guanine nucleotide exchange.
Length = 79
Score = 38.7 bits (91), Expect = 3e-04
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 17/79 (21%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRM 287
IG C+IG NV I S I D ++ + I+ V+G
Sbjct: 18 VIGRNCKIGKNVVI------------DNSYIWDDVTIEDGCTIHHSIVADGAVIG----- 60
Query: 288 ENITVLGECIIGWKCVVGQ 306
+ T+ +I + V+G
Sbjct: 61 KGCTIPPGSLISFGVVIGD 79
Score = 31.0 bits (71), Expect = 0.17
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
IG G I G IK S I R+ + + ++ I W V +E+ + I+
Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYI-W-----DDVTIEDGCTIHHSIVAD 55
Query: 301 KCVVGQWVRMENITVLGEDVIVQD 324
V+G+ + +++ V++ D
Sbjct: 56 GAVIGKGCTIPPGSLISFGVVIGD 79
Score = 26.8 bits (60), Expect = 4.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 214 GDG-IVGNVLVDPTATIGPGCRIGPNVTIGPGVVI 247
DG + + +V A IG GC I P I GVVI
Sbjct: 43 EDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVI 77
Score = 26.8 bits (60), Expect = 4.8
Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 258 ILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLG 317
I R + + ++ +IG C +G+ V ++N + + I C + +++
Sbjct: 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-------SIVA 54
Query: 318 EDVIVQDELYVNGGQVL 334
+ ++ + G ++
Sbjct: 55 DGAVIGKGCTIPPGSLI 71
Score = 26.0 bits (58), Expect = 9.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGP 243
+ ++ TI PG I V IG
Sbjct: 53 VADGAVIGKGCTIPPGSLISFGVVIGD 79
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 41.9 bits (99), Expect = 4e-04
Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 42/291 (14%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML + ++ +V + + ++ E++++ + + EN P GT G L
Sbjct: 32 MLFYILKEAFAIS-DDVHVVLHHQKERIKEAVLEYFPGVIF-HTQDLENYP-GTGGAL-- 86
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF---KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
I K + +LN D+ P +L +N + V + +P YG V+
Sbjct: 87 -MGIEPKHER-VLILNGDM----PLVEKDELEKLLENDADI-VMSVFHLADPKGYGRVV- 138
Query: 118 NEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE------IF 165
E+G ++ +E +E +NAG+Y+F+ +L+ +K + +KE I
Sbjct: 139 IENGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIA 198
Query: 166 PLMSKEKQLYAMELK-GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVD 224
+ K + + A+ + +M V + K + +++ +K+G V++
Sbjct: 199 LAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKK---NAMKQG------VIMR 249
Query: 225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
TI I V +E GV I + + ++ +K+HS +E II
Sbjct: 250 LPETI----YIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESII 296
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 41.2 bits (97), Expect = 7e-04
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 238 NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECI 297
NVT+G V I G +K I D + +S +E +G C +G + R+ L E
Sbjct: 283 NVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAE-- 340
Query: 298 IGWKCVVGQWVRMENITVLGE 318
VG +V M+ LG+
Sbjct: 341 ---GAHVGNFVEMKK-ARLGK 357
Score = 30.0 bits (68), Expect = 2.3
Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 44/137 (32%)
Query: 217 IVGNVLVDPTATIGPGC-----RIGPNVTIGPGVVIEGGVCIKRSTI-----LR---DAI 263
I GNV + IG GC IG + I P V+E TI LR +
Sbjct: 280 IEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELA 339
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMEN-----------ITVLGECIIGWKCVVGQWVRMEN 312
+H VG +V M+ +T LG+ IG +G N
Sbjct: 340 EGAH-------------VGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCN 386
Query: 313 I-------TVLGEDVIV 322
T++G+DV V
Sbjct: 387 YDGANKFKTIIGDDVFV 403
>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic
anhydrases are zinc-containing enzymes that catalyze the
reversible hydration of carbon dioxide in a two-step
mechanism, involving the nucleophilic attack of a
zinc-bound hydroxide ion on carbon dioxide, followed by
the regeneration of the active site by ionization of the
zinc-bound water molecule and removal of a proton from
the active site. They are ubiquitous enzymes involved in
fundamental processes like photosynthesis, respiration,
pH homeostasis and ion transport. There are three
distinct groups of carbonic anhydrases - alpha, beta
and gamma - which show no significant sequence identity
or structural similarity. Gamma CAs are homotrimeric
enzymes, with each subunit containing a left-handed
parallel beta helix (LbH) structural domain.
Length = 167
Score = 39.5 bits (93), Expect = 9e-04
Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 39/154 (25%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVI---EG-GVCIKRSTILRDAIV------------KS 266
V PTA + IG NV +GPG I EG + I + ++D +V K+
Sbjct: 11 VHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN 70
Query: 267 HSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW-----KCVVGQW-VRMENITVLGEDV 320
S G I+ +G C IG+ VG V N V G V
Sbjct: 71 VSIAHGAIVHGPAYIGD-----------NCFIGFRSVVFNAKVGDNCVIGHNAVVDG--V 117
Query: 321 IVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQD 354
+ YV G V+ ++ +L DV
Sbjct: 118 EIPPGRYVPAGAVITSQTQADAL----PDVTDSA 147
Score = 33.8 bits (78), Expect = 0.074
Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 60/173 (34%)
Query: 214 GDGIVG-NVLVDPTATI----GPGCRIGPNVTIGPGVVIEG----GVCI-KRSTILRDAI 263
GD I+G NV V P A+I G IG NV I GVVI V I K +I AI
Sbjct: 19 GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAI 78
Query: 264 VKSHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
V +++ + C IG++ VV + VG V+G + +V
Sbjct: 79 VHGPAYIGDNCFIGFRSVV------------------FNAKVGDN------CVIGHNAVV 114
Query: 323 QDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPE 375
V + YV G V+ ++ ++P+
Sbjct: 115 DG-------------------------VEIPPGRYVPAGAVITSQTQADALPD 142
>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal
Left-handed parallel beta-Helix (LbH) domain: eIF-2B is
a eukaryotic translation initiator, a guanine nucleotide
exchange factor (GEF) composed of five different
subunits (alpha, beta, gamma, delta and epsilon). eIF2B
is important for regenerating GTP-bound eIF2 during the
initiation process. This event is obligatory for eIF2 to
bind initiator methionyl-tRNA, forming the ternary
initiation complex. The eIF-2B gamma subunit contains an
N-terminal domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH domain with 4 turns,
each containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The epsilon and gamma subunits form the catalytic
subcomplex of eIF-2B, which binds eIF2 and catalyzes
guanine nucleotide exchange.
Length = 81
Score = 36.8 bits (86), Expect = 0.001
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 229 IGPGCRIGPNVTI-----GPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
+G ++G +I G I V I I+ + ++ LE CIIG V+G+
Sbjct: 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGE 61
Query: 284 WVRMENITVLGECIIG 299
++++ C++G
Sbjct: 62 KCKLKD------CLVG 71
Score = 28.3 bits (64), Expect = 1.4
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 29/104 (27%)
Query: 241 IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGW 300
+G + IKRS +IG C +G+ V++ N C+I
Sbjct: 2 VGENTQVGEKTSIKRS-----------------VIGANCKIGKRVKITN------CVIMD 38
Query: 301 KCVVGQWVRMENITVLGEDVIVQDEL-----YVNGGQVLPHKSI 339
+ +EN ++G ++ ++ V G + +
Sbjct: 39 NVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVEAGTE 81
Score = 26.4 bits (59), Expect = 7.9
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVR------MENITVLGEDVIVQDELYVNGGQV 333
+VG+ ++ T + +IG C +G+ V+ M+N+T+ + +++ + NG +
Sbjct: 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTI-EDGCTLENCIIGNGAVI 59
>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily)
[General function prediction only].
Length = 190
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
TIG IG I PGV I G A++ + S + + + V G
Sbjct: 126 TIGEDVWIGAGAVILPGVTIGEG-----------AVIGAGSVVTKDVPPYGIVAGN 170
Score = 32.2 bits (73), Expect = 0.25
Identities = 23/100 (23%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVC--IKRSTILRDAIVKSHSWLE-- 271
G+ +LV TIG +GPNVTI V I + W+
Sbjct: 77 GVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAG 136
Query: 272 -----GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQ 306
G IG V+G V + + V G
Sbjct: 137 AVILPGVTIGEGAVIG-----AGSVVTK-DVPPYGIVAGN 170
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 39.5 bits (92), Expect = 0.002
Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 59/258 (22%)
Query: 1 MLLHQIEALVEAGVREVILA-------------VSYRAE-----QMEDELTVETKKL--- 39
M+ + ++ +V AG++E++L SY E +++ +L E + +
Sbjct: 36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPP 95
Query: 40 GISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKD--------LVSF 91
G++++ + +PLG + A+ + PF V+ D++ D D +++
Sbjct: 96 GVTIMNVRQGQPLGLGHSILCARPAIG--DNPFVVVLPDVVIDDASADPLRYNLAAMIAR 153
Query: 92 HKNHGKEGTIVVTQVEEPSKYGVVLYNEH-------GCIESFIEK---PQEFVSNKINAG 141
G+ + + S+Y V+ E I FIEK PQ S+ + G
Sbjct: 154 FNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVG 213
Query: 142 MYIFN-----------PSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPR 190
Y+ + P RI++ E ++K++ + AM + G D G+
Sbjct: 214 RYVLSADIWPELERTEPGAWGRIQLTDAIAE------LAKKQSVDAMLMTGDSYDCGKKM 267
Query: 191 DFLKGMCLY-LNSLRQKR 207
+++ Y L +L++
Sbjct: 268 GYMQAFVKYGLRNLKEGA 285
>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This
family is composed of gamma carbonic anhydrase (CA),
Ferripyochelin Binding Protein (FBP), E. coli paaY
protein, and similar proteins. CAs are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism, involving the
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionary distinct groups - alpha, beta and gamma
carbonic anhydrases - which show no significant sequence
identity or structural similarity. Gamma CAs are
trimeric enzymes with left-handed parallel beta helix
(LbH) structural domain.
Length = 153
Score = 38.2 bits (90), Expect = 0.002
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 219 GNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL-EGCII- 275
+ + P AT IG +G ++ G V+ G V + I + + + +G ++
Sbjct: 4 PSAFIAPNATVIGD-VTLGEGSSVWFGAVLRGDV----NPI----RIGERTNIQDGSVLH 54
Query: 276 ---GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
G+ ++G V + + VL C IG C++G + + V+G+ IV
Sbjct: 55 VDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIV 104
Score = 37.8 bits (89), Expect = 0.003
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 217 IVGNVLVDPTATIGPGC---------RIGPNVTIGPGVVI----EGGVCI-KRSTILRDA 262
++G+V + +++ G RIG I G V+ I T+ A
Sbjct: 14 VIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGA 73
Query: 263 IVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+ L GC IG C++G +L +IG +V
Sbjct: 74 V------LHGCTIGDNCLIGM-----GAIILDGAVIGKGSIVA 105
Score = 29.3 bits (67), Expect = 2.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGG 250
N L+ A I G IG + G ++ G
Sbjct: 83 NCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113
>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 425
Score = 39.4 bits (93), Expect = 0.002
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 35/127 (27%)
Query: 92 HKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQE-----------FVSNKI 138
H G + T+ +V EE S +GV+ +E+ I +F+EKP S
Sbjct: 152 HVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLAS--- 208
Query: 139 NAGMYIFNPSVLDRIEIK----PTS---IEKEIFPLMSKEKQLYA-----------MELK 180
G+Y+FN L + + P S K+I P + +E ++YA E +
Sbjct: 209 -MGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEE 267
Query: 181 GFWMDVG 187
+W DVG
Sbjct: 268 PYWRDVG 274
Score = 29.4 bits (67), Expect = 3.5
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 244 GVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCV 303
G +I G V ++RS + V S S +E ++ + ++ V C + +CV
Sbjct: 333 GCIISGAV-VRRSVLFSRVRVNSFSNVEDSVL-----------LPDVNVGRSCRLR-RCV 379
Query: 304 VGQWVRMENITVLGED 319
+ + + V+GED
Sbjct: 380 IDRGCVIPEGMVIGED 395
>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase,
C-terminal Left-handed parallel beta helix (LbH) domain:
Glucose-1-phosphate adenylyltransferase is also known as
ADP-glucose synthase or ADP-glucose pyrophosphorylase.
It catalyzes the first committed and rate-limiting step
in starch biosynthesis in plants and glycogen
biosynthesis in bacteria. It is the enzymatic site for
regulation of storage polysaccharide accumulation in
plants and bacteria. The enzyme is a homotetramer, with
each subunit containing an N-terminal catalytic domain
that resembles a dinucleotide-binding Rossmann fold and
a C-terminal LbH fold domain with at 5 turns, each
containing three imperfect tandem repeats of a
hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
The LbH domain is involved in cooperative allosteric
regulation and oligomerization.
Length = 104
Score = 37.1 bits (87), Expect = 0.002
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 229 IGPGCRIGP----NVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ GC I N + GV + G ++ S I+ + + ++ + II V+
Sbjct: 15 VSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIP 72
Score = 27.0 bits (61), Expect = 6.9
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 220 NVLVDPTATIGPGCRIG--PNVTIGPGVVIEGGVCI 253
++D I G IG P V E G+ +
Sbjct: 62 RAIIDKNVVIPDGVVIGGDPEEDRARFYVTEDGIVV 97
>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the
protein product of the E. coli wcaF gene and similar
proteins. WcaF is part of the gene cluster responsible
for the biosynthesis of the extracellular polysaccharide
colanic acid. The wcaF protein is predicted to contain a
left-handed parallel beta-helix (LbH) domain encoded by
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity. Many are trimeric in their
active forms.
Length = 107
Score = 36.8 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVI-EGGVCIKRSTILRD 261
L+ IG G + +GPGV I EG V RS ++RD
Sbjct: 52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD 92
Score = 28.7 bits (65), Expect = 1.7
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 13/80 (16%)
Query: 228 TIGPGCRIGPNV--------TIGPGVVIEGGVCI-----KRSTILRDAIVKSHSWLEGCI 274
TIG IG V TIG I G + + I +G
Sbjct: 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAW 64
Query: 275 IGWKCVVGQWVRMENITVLG 294
+ + VG V + V+G
Sbjct: 65 VAAEAFVGPGVTIGEGAVVG 84
>gnl|CDD|236703 PRK10502, PRK10502, putative acyl transferase; Provisional.
Length = 182
Score = 36.9 bits (86), Expect = 0.008
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 228 TIGPGCRIGPNVTIGPGVVI-EGGVCIKRSTILRD 261
IG GC + +V + PGV I G V RS++ +
Sbjct: 126 VIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS 160
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 36.5 bits (85), Expect = 0.013
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 19/203 (9%)
Query: 2 LLHQIEALVEAGVRE-VILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+ IE L +AG+ E V++ YRA+ +E+ L I V + + E T L L
Sbjct: 34 IYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKI--VINSDYEKTNTGYSLLL 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
AKD + F ++ SD + + L + G+ + + + +E
Sbjct: 92 AKDYM---DGRFILVMSDHV--YEPSILERLLEAPGEGLIVDRRPRYVGVEEATKVKDEG 146
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPL--MSKEKQLYAME 178
G I + E+ I G++I + S+ + +E+ + + KE L E
Sbjct: 147 GRIVEIGKDLTEYDGEDI--GIFILSDSIFEDTY--ELLVERSEYDYREVEKEAGLPFTE 202
Query: 179 L-----KGFWMDVGQPRDFLKGM 196
+ FWM+V P D +
Sbjct: 203 VDIHVDGLFWMEVDTPEDLERAR 225
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
choline phosphorylation for cell surface LPS epitopes
[Cell envelope biogenesis, outer membrane].
Length = 231
Score = 36.6 bits (85), Expect = 0.013
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ QIE L EAG+ ++ + V Y EQ E K ++LV++ + L L
Sbjct: 33 LIERQIEQLREAGIDDITIVVGYLKEQFE----YLKDKYDVTLVYNPKYREYNNIYSLYL 88
Query: 61 AKDILNKSQEPFFVLNSDI 79
A+D LN + ++++SD
Sbjct: 89 ARDFLNNT----YIIDSDN 103
>gnl|CDD|100041 cd03350, LbH_THP_succinylT,
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase
catalyzes the conversion of tetrahydrodipicolinate and
succinyl-CoA to N-succinyltetrahydrodipicolinate and
CoA. It is the committed step in the succinylase pathway
by which bacteria synthesize L-lysine and
meso-diaminopimelate, a component of peptidoglycan. The
enzyme is homotrimeric and each subunit contains an
N-terminal region with alpha helices and hairpin loops,
as well as a C-terminal region with a left-handed
parallel alpha-helix (LbH) structural motif encoded by
hexapeptide repeat motifs.
Length = 139
Score = 35.4 bits (82), Expect = 0.013
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-AIVKSHSWL-EGCIIGW 277
V P A I G IGP + + G + T++ A V S + + + +
Sbjct: 1 GRRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSA 60
Query: 278 KCVVGQWVR-MENITVLGE--CIIGWKCVVGQWVRMENITVLGEDVIV 322
V+G + ++ V+ E IG C V + V + VL V++
Sbjct: 61 GAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVL 108
Score = 29.7 bits (67), Expect = 1.2
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIG---------PGVVIEGGVCI-KRSTILRDA 262
EG + V A IG + IG P V+IE V I +
Sbjct: 36 EGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATP-VIIEDDVFIGANCEV---- 90
Query: 263 IVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
+EG I+G V+ V + T + + G
Sbjct: 91 -------VEGVIVGKGAVLAAGVVLTQSTPIYDRETG 120
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also called
GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the
formation of GDP-Mannose from mannose-1-phosphate and
GTP. Mannose is a key monosaccharide for glycosylation
of proteins and lipids. GDP-Mannose is the activated
donor for mannosylation of various biomolecules. This
enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase and mannose-1-phosphate
guanylyltransferase. This CD covers the N-terminal
GDP-mannose-1-phosphate guanylyltransferase domain,
whereas the isomerase function is located at the
C-terminal half. GDP-MP is a member of the
nucleotidyltransferase family of enzymes.
Length = 274
Score = 36.4 bits (85), Expect = 0.019
Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 68/198 (34%)
Query: 50 EPLG--TAGPLALAKDILNKSQ--EPFFVLNSD-IICDFPFKDLVSFHK--NHG----KE 98
EP G TA +ALA L K VL SD +I +D+ +F K +E
Sbjct: 80 EPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLI-----EDVEAFLKAVKKAVEAAEE 134
Query: 99 GTIVVTQVE--EPS-KYGVVLYNE---HGC--IESFIEKP-----QEFVSNK---INAGM 142
G +V ++ P YG + E G ++ F+EKP +E++ + N+G+
Sbjct: 135 GYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGI 194
Query: 143 YIFNPSV-LDRIE--------------------------------IKPTSIEKEIFPLMS 169
++F L+ ++ I SI+ + M
Sbjct: 195 FLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAV---ME 251
Query: 170 KEKQLYAMELKGFWMDVG 187
K K++ + W D+G
Sbjct: 252 KTKKVAVVPADFGWSDLG 269
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose [Regulatory functions, Protein
interactions].
Length = 297
Score = 36.2 bits (83), Expect = 0.023
Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 61/262 (23%)
Query: 1 MLLHQIEALVEAGVREVILA-------------VSYRAE-----QMEDELTVETKKL--- 39
M+ + ++ +V AG++E++L SY E +++ +L E + +
Sbjct: 36 MIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPP 95
Query: 40 GISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICD--------FPFKDLVSF 91
G++++ + +PLG + A+ ++ + PF V+ DII D + +++
Sbjct: 96 GVTIMNVRQAQPLGLGHSILCARPVVGDN--PFVVVLPDIIIDDATADPLRYNLAAMIAR 153
Query: 92 HKNHGKEGTIVVTQVEEPSKYGVVLYNEH-------GCIESFIEK---PQEFVSNKINAG 141
G+ + + S+Y V+ E I FIEK PQ S+ + G
Sbjct: 154 FNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVG 213
Query: 142 MYIFNPSV---LDRIE------IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDF 192
Y+ + + L+R E I+ T E ++K++ + AM + G D G+ +
Sbjct: 214 RYVLSADIWAELERTEPGAWGRIQLTDAIAE----LAKKQSVDAMLMTGDSYDCGKKMGY 269
Query: 193 LKGMCLYLNSLRQKRPKLLKEG 214
++ Y LR LKEG
Sbjct: 270 MQAFVKY--GLRN-----LKEG 284
>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel
beta-Helix (LbH) N-terminal domain: This group is
composed of Xanthomonas campestris WcxM and proteins
with similarity to the WcxM N-terminal domain. WcxM is
thought to be bifunctional, catalyzing both the
isomerization and transacetylation reactions of
keto-hexoses. It contains an N-terminal LbH domain
responsible for the transacetylation function and a
C-terminal isomerase domain. The LbH domain contains
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with
acyltransferase activity.
Length = 119
Score = 34.4 bits (80), Expect = 0.025
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 217 IVG-NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRD-----AIVKSHSWL 270
I+G NV ++ IG +I NV+I GV IE V I + + + + + L
Sbjct: 6 IIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWEL 65
Query: 271 EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+G + +G N T+L IG +VG
Sbjct: 66 KGTTVKRGASIGA-----NATILPGVTIGEYALVG 95
Score = 32.1 bits (74), Expect = 0.13
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIK 254
IG C IG NV I V I V I+
Sbjct: 1 IGDNCIIGTNVFIENDVKIGDNVKIQ 26
Score = 28.6 bits (65), Expect = 2.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGG 250
A+IG I P VTIG ++ G
Sbjct: 74 ASIGANATILPGVTIGEYALVGAG 97
>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.
Length = 196
Score = 35.6 bits (82), Expect = 0.025
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC-- 279
+V PTA + P + +V +G GV I G + R R + + +GCI+ C
Sbjct: 12 VVHPTAFVHPSAVLIGDVIVGAGVYI-GPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT 70
Query: 280 --VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
+VG+ + + +L C+IG +VG + + V+GE+ IV +V G
Sbjct: 71 DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAG 124
>gnl|CDD|100052 cd04646, LbH_Dynactin_6, Dynactin 6 (or subunit p27): Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p27 is part of the pointed-end
subcomplex in dynactin that also includes p25, p26, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain the imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed
parallel beta helix (LbH) structural domain. Proteins
containing hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 164
Score = 35.0 bits (81), Expect = 0.025
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 31/114 (27%)
Query: 228 TIGPGCRIGPNVTI---------GPGVVIEGGVCIKRSTILRDA-----IVKSHSWLE-G 272
TIGPG + P TI G +IE V I A I+ S++ E G
Sbjct: 19 TIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVG 78
Query: 273 C-----------IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITV 315
C + K VG+ N+ + CIIG C + + TV
Sbjct: 79 CKCEALKIGNNNVFESKSFVGK-----NVIITDGCIIGAGCKLPSSEILPENTV 127
>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the
CoA-dependent acetylation of the side chain hydroxyl
group of L-serine to form O-acetylserine, as the first
step of a two-step biosynthetic pathway in bacteria and
plants leading to the formation of L-cysteine. This
reaction represents a key metabolic point of regulation
for the cysteine biosynthetic pathway due to its
feedback inhibition by cysteine. The enzyme is a 175 kDa
homohexamer, composed of a dimer of homotrimers. Each
subunit contains an N-terminal alpha helical region and
a C-terminal left-handed beta-helix (LbH) subdomain with
5 turns, each containing a hexapeptide repeat motif
characteristic of the acyltransferase superfamily of
enzymes. The trimer interface mainly involves the
C-terminal LbH subdomain while the dimer (of trimers)
interface is mediated by the N-terminal alpha helical
subdomain.
Length = 101
Score = 34.0 bits (79), Expect = 0.026
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 229 IGPGCRIGPNVTI--GPGVVIEGGVCIKRSTILRDAIV---KSHSWLEGC-IIGWKCVVG 282
I PG +IGP + I G G+VI I + + + K + IG V+G
Sbjct: 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIG 64
Query: 283 QWVRMENITVLGECIIGWKCVVG 305
+LG IG +G
Sbjct: 65 A-----GAKILGNITIGDNVKIG 82
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 36.1 bits (84), Expect = 0.027
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK-RSTILRDAIVKSHSWLEGCIIGW 277
G +VDP T I +VTIG VVI G + R+TI DA+V + L +G
Sbjct: 257 GVTIVDPATT-----WIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGE 311
Query: 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGED 319
V VR T E IG VG + + TVLGE+
Sbjct: 312 GASV---VR----THGSESEIGAGATVGPFTYLRPGTVLGEE 346
Score = 35.7 bits (83), Expect = 0.041
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 86 KDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEK----PQEFVSNKINAG 141
DLV+ H G T++ T +++P+ YG +L ++ G + + +E+ P + ++N+G
Sbjct: 118 ADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSG 177
Query: 142 MYIFNPSVL 150
+Y F+ +VL
Sbjct: 178 VYAFDAAVL 186
Score = 33.8 bits (78), Expect = 0.16
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 226 TATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWV 285
TIG +GP+ T+ V EG +V++H IG VG +
Sbjct: 289 RTTIGEDAVVGPDTTLTDVTVGEGAS-----------VVRTHG--SESEIGAGATVGPFT 335
Query: 286 RMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSS 342
+ TVLGE + +G +V +N T+ G V YV + H +IG+S
Sbjct: 336 YLRPGTVLGE-----EGKLGAFVETKNATI-GRGTKVPHLTYVGDADIGEHSNIGAS 386
>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This
family is composed of maltose O-acetyltransferase,
galactoside O-acetyltransferase (GAT), xenobiotic
acyltransferase (XAT) and similar proteins. MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively while GAT
specifically acetylates galactopyranosides. XAT
catalyzes the CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. XATs are implicated in
inactivating xenobiotics leading to xenobiotic
resistance in patients. Members of this family contain a
a left-handed parallel beta-helix (LbH) domain with at
least 5 turns, each containing three imperfect tandem
repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their
active form.
Length = 109
Score = 34.0 bits (79), Expect = 0.028
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 22/54 (40%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
IG IG NV I PGV I +G ++G VV
Sbjct: 60 VIGDDVWIGANVVILPGVTIG----------------------DGAVVGAGSVV 91
>gnl|CDD|100059 cd05635, LbH_unknown, Uncharacterized proteins, Left-handed
parallel beta-Helix (LbH) domain: Members in this group
are uncharacterized bacterial proteins containing a LbH
domain with multiple turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing
hexapeptide repeats are often enzymes showing
acyltransferase activity.
Length = 101
Score = 33.4 bits (77), Expect = 0.034
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 219 GNVLVDPTATIGPGCRIGPNVTIGPGVV------IEGGVCI 253
G + + A I P I V IGPG I G I
Sbjct: 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTI 50
Score = 30.3 bits (69), Expect = 0.51
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 235 IGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI-IGWKCVVG 282
IG + I P VIEG V I + VK + + G IG C +G
Sbjct: 14 IGKDAVIEPFAVIEGPVYIG-----PGSRVKMGARIYGNTTIGPTCKIG 57
Score = 28.0 bits (63), Expect = 3.2
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
I G V + P + + G RI N TIGP I G V +I+ K H G
Sbjct: 26 IEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEV---EDSIIEGYSNKQHDGFLG---- 78
Query: 277 WKCVVGQWV 285
+G W
Sbjct: 79 -HSYLGSWC 86
>gnl|CDD|236996 PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional.
Length = 272
Score = 34.8 bits (81), Expect = 0.055
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGV---CIKRSTILRDAIVKSHSWLEGCIIGWK 278
+VD AT+G +IG NV + GV I GGV I+ D C IG +
Sbjct: 140 MVDTWATVGSCAQIGKNVHLSGGVGI-GGVLEPLQANPVIIED----------NCFIGAR 188
Query: 279 CVVGQWVRMENITVLGE 295
V + V +E +VLG
Sbjct: 189 SEVVEGVIVEEGSVLGM 205
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 33.4 bits (77), Expect = 0.13
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 36/177 (20%)
Query: 106 VEEPSKYGVVLYNEHGC------IESFIEKPQEFVSNKI-NAGMYIFNPSVLDRIEIKPT 158
V P K+ V + + G IE+ + P+ V+ KI AGM + + IKP
Sbjct: 74 VSNPEKW-VDDFAKAGASQFTFHIEATEDDPKA-VARKIREAGMKV-------GVAIKPK 124
Query: 159 SIEKEIFPLMSKEKQLYAMELKGFWMDV-----GQPRDFLKGMCLYLNSLRQKRPKLLKE 213
+ + +FPL+ + L M L M V GQ F+ M + LR++ P L +
Sbjct: 125 TPVEVLFPLI--DTDLVDMVLV---MTVEPGFGGQ--SFMHDMMPKVRELRKRYPHLNIQ 177
Query: 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTI-LRDAIVKSHSW 269
DG + TI G NV I G I K++ LR+++ K S
Sbjct: 178 VDGGIN------LETIDIAADAGANV-IVAGSSIFKAKDRKQAIELLRESVQKHLSK 227
>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 32.9 bits (75), Expect = 0.22
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
D I+ +S L+ ++G + +VG+ VR+ V + I C V V +EN +GE
Sbjct: 22 DVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFS 81
Query: 321 IVQDELYVNG 330
++ +L V G
Sbjct: 82 SIKGKLTVIG 91
Score = 28.3 bits (63), Expect = 7.2
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 245 VVIEGGVCIKRSTILR------DAIVKSHSWLEGCIIGWKCVVGQWVRME-NITVLGECI 297
+V++G V I ++++L+ + IV + G I+ + W ++ N+ V +
Sbjct: 17 IVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAY 76
Query: 298 IGWKCVVGQWVRMENITVLGEDVIVQ 323
IG + + + +G DVI++
Sbjct: 77 IGEFSSIKGKLTVIGDLDIGADVIIE 102
>gnl|CDD|227887 COG5600, COG5600, Transcription-associated recombination protein
[DNA replication, recombination, and repair].
Length = 413
Score = 33.2 bits (76), Expect = 0.24
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 7/117 (5%)
Query: 63 DILNKSQEP--FFVLNSDIICDFPFKDLVSFHKNH--GKEGTIVVTQVEEPSKYGVVLYN 118
SQ +L + D + G+ T V +++ G
Sbjct: 19 LTKCLSQNGREIAILGKVLTGDSKIDAKLKETIQRPFGRNDTAVTLVLQKFLNLGRDKDP 78
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLY 175
+ E QE N Y P + ++ + +EI+ L +KQLY
Sbjct: 79 WS---KRSSELLQELYKNLTAELSYSSAPHLEVLVKNAVRMLGREIWNLTVVKKQLY 132
>gnl|CDD|225082 COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino
acid transport and metabolism].
Length = 271
Score = 31.5 bits (72), Expect = 0.53
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRS---TILRDAIV---KSH 267
G G +VD A++G ++G N IG G I GGV I+ D + S
Sbjct: 138 GAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASI-GGVLEPLQANPVIIGDNCLIGANSE 196
Query: 268 SWLEGCIIGWKCVVG 282
+EG I+G CVV
Sbjct: 197 V-VEGVIVGDGCVVA 210
>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and
metabolism].
Length = 194
Score = 31.1 bits (71), Expect = 0.66
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 28/106 (26%)
Query: 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRS-TILRDAIVKSHSWLEG 272
G G+V + TA IG I VT+G G E G KR TI + + +
Sbjct: 85 GTGVV----IGETAVIGDDVTIYHGVTLG-GTGKESG---KRHPTIGNGVYIGAGA---- 132
Query: 273 CIIGWKCVVGQWVRMENITVLGECI-IGWKCVVGQWVRMENITVLG 317
I+G NI + G+ IG VV + V N TV+G
Sbjct: 133 KILG------------NIEI-GDNAKIGAGSVVLKDVP-PNATVVG 164
Score = 28.0 bits (63), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 229 IGPGCRIGPNVTI--GPGVVI 247
I PG +IG + I G GVVI
Sbjct: 70 IHPGAKIGRGLFIDHGTGVVI 90
Score = 28.0 bits (63), Expect = 7.2
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 232 GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENIT 291
G I P IG G+ I+ G G +IG V+G V + +
Sbjct: 67 GIEIHPGAKIGRGLFIDHGT--------------------GVVIGETAVIGDDVTIYHGV 106
Query: 292 VLG 294
LG
Sbjct: 107 TLG 109
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of epsilon subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
epsilon shares sequence similarity with gamma subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 217
Score = 31.0 bits (71), Expect = 0.79
Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLG-------ISLVFSHENEPLG 53
++ + +E L GV EV + ++Q+++ + ++K + ++ S + LG
Sbjct: 33 LIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIE-KSKWSKPKSSLMIVIIIMSEDCRSLG 91
Query: 54 TAGPLALAKDILNKS--QEPFFVLNSDIICDFPFKDLVSFHKNHGKEG-----TIVVTQV 106
A +D+ K + F +++ D++ + K+++ HK K+ T+V+ +
Sbjct: 92 DA-----LRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146
>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY.
Members of this family are located next to other genes
organized into apparent operons for phenylacetic acid
degradation. PaaY is located near the end of these gene
clusters and often next to PaaX, a transcriptional
regulator [Energy metabolism, Other].
Length = 192
Score = 30.6 bits (69), Expect = 0.82
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 223 VDPTAT------IGPGCRIGPNVTI----GPGVVIEGGVCIKRSTILRDAIVKSHSWLEG 272
V PTA +G C +GP ++ G V+ EG ++D V H +
Sbjct: 17 VHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGAN-------IQDNCVM-HGFPGQ 68
Query: 273 CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332
VV + + + +L CI+G +VG + + V+GE+ IV +V G
Sbjct: 69 -----DTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGA 123
Query: 333 VLPHKSI 339
+P + +
Sbjct: 124 EMPAQYL 130
>gnl|CDD|137467 PRK09677, PRK09677, putative lipopolysaccharide biosynthesis
O-acetyl transferase WbbJ; Provisional.
Length = 192
Score = 30.6 bits (69), Expect = 0.93
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAI 263
IG IG NVTI PGV I G + ++++ +I
Sbjct: 133 IGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSI 167
Score = 28.7 bits (64), Expect = 3.5
Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 44/151 (29%)
Query: 190 RDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRI----GPNVTIGPGV 245
RD L Y N + P ++ I T G G R+ + G V
Sbjct: 17 RDVLLTKVFYRNCRIIRFPFYIRNDGSINFGE----GFTSGVGLRLDAFGRGKLFFGDNV 72
Query: 246 VIEGGV---CIKRSTILRDAIVKSHSWL----------------------------EGCI 274
+ V CI+ TI RD ++ S ++ +
Sbjct: 73 QVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVV 132
Query: 275 IGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
IG + +G EN+T+L IG C+VG
Sbjct: 133 IGQRVWIG-----ENVTILPGVSIGNGCIVG 158
>gnl|CDD|215263 PLN02472, PLN02472, uncharacterized protein.
Length = 246
Score = 30.3 bits (68), Expect = 1.3
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 23/108 (21%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVK-----SHSWLEGC---------- 273
+ + PNV + V + G + +LR + K + E C
Sbjct: 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPT 121
Query: 274 ------IIGWKCVVGQWVRMENITVLGECIIGWKCVV--GQWVRMENI 313
+I +G + + + T+ ECIIG ++ G V +I
Sbjct: 122 GLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSI 169
>gnl|CDD|225326 COG2606, EbsC, Uncharacterized conserved protein [Function
unknown].
Length = 155
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGED 349
++G GQ R+ T + E + D +YV+ G+ G + + +D
Sbjct: 95 YVVGGVSPFGQKKRLP--TYIDESALRFDTIYVSAGKR------GLLVELAPQD 140
>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a
major component of the activator complex that stimulates
dynein-mediated vesicle transport. Dynactin is a
heterocomplex of at least eight subunits, including a
150,000-MW protein called Glued, the actin-capping
protein Arp1, and dynamatin. In vitro binding
experiments show that dynactin enhances dynein-dependent
motility, possibly through interaction with microtubules
and vesicles. Subunit p25 is part of the pointed-end
subcomplex in dynactin that also includes p26, p27, and
Arp11. This subcomplex interacts with membranous
cargoes. p25 and p27 contain imperfect tandem repeats of
a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X),
indicating a left-handed parallel beta helix (LbH)
structural domain. Proteins containing hexapeptide
repeats are often enzymes showing acyltransferase
activity.
Length = 161
Score = 29.5 bits (67), Expect = 1.6
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 274 IIGWKCVVGQWVRME----NITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVN 329
++ K ++ V + +++ CI+ CV+ + + V + + D +++
Sbjct: 23 VLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIG 82
Query: 330 GGQVLPHKSIGSSLHM-----LGEDVIVQDELYVNGGQVLP 365
V+ IGS +H+ +G I++D + + G V+P
Sbjct: 83 ENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVP 123
>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class
of hexapeptide acyltransferases is composed of a large
number of microbial enzymes that catalyze the
CoA-dependent acetylation of a variety of
hydroxyl-bearing acceptors such as chloramphenicol and
streptogramin, among others. Members of this class of
enzymes include Enterococcus faecium streptogramin A
acetyltransferase and Pseudomonas aeruginosa
chloramphenicol acetyltransferase. They contain repeated
copies of a six-residue hexapeptide repeat sequence
motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a
left-handed parallel beta helix (LbH) structure. The
active enzyme is a trimer with CoA and substrate binding
sites at the interface of two separate LbH subunits.
XATs are implicated in inactivating xenobiotics leading
to xenobiotic resistance in patients.
Length = 145
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 227 ATIGPGCRIGPNVTIGPG 244
+IG C I P V IG G
Sbjct: 22 LSIGKFCSIAPGVKIGLG 39
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase
(S-methylmethionine-dependent) [Amino acid transport
and metabolism].
Length = 300
Score = 30.0 bits (68), Expect = 2.1
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 32 LTVETKKLGISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDII 80
L E ++ G L ++PL +A L +I+ F +DII
Sbjct: 17 LATELERRGCDL-----SDPLWSALALVDEPEIVRNVHADFLRAGADII 60
>gnl|CDD|234432 TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of UDP-GlcNAc
biosynthesis. Homologs of this enzyme are identified in
a number of bacterial organisms and modeled here. A
number of these are observed in proximity to the GlmS
and GlmM genes, and phylogenetic profiling by PPP
identifies the LEPBI_I0518 gene in Leptospira biflexa as
a likely Glm-system candidate. Multiple sequence
alignments of these bacterial homologs with their
archaeal counterparts reveals significant structural
differences, necessitating the construction of separate
models.
Length = 337
Score = 30.0 bits (68), Expect = 2.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
+ G V + P A + G RI +IGP I G V ++I+ K H +G +G
Sbjct: 159 LEGPVYIGPGARVKAGARIYGGTSIGPTCKIGGEV---ENSIIEGYSNKHH---DG-FLG 211
Query: 277 WKCVVGQWV 285
+G W
Sbjct: 212 -HSYLGSWC 219
Score = 29.2 bits (66), Expect = 4.1
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 23/111 (20%)
Query: 238 NVTIGPGVVIEGGVCIKRST----ILRDAIVKSHSWLEGCIIGWKCVVGQWVRM-ENITV 292
+V I G + G + S I +DA ++ S+LEG +G R+ +
Sbjct: 123 HVFIEEGATVRPGAVLDASDGPIYIGKDARIEPFSFLEG-----PVYIGPGARVKAGARI 177
Query: 293 LGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ--VLPHKSIGS 341
G IG C +G V E+ I++ Y N L H +GS
Sbjct: 178 YGGTSIGPTCKIGGEV---------ENSIIEG--YSNKHHDGFLGHSYLGS 217
Score = 27.7 bits (62), Expect = 9.9
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIE------GGVCI 253
G + + A I P + V IGPG ++ GG I
Sbjct: 143 GPIYIGKDARIEPFSFLEGPVYIGPGARVKAGARIYGGTSI 183
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 123 IESFIEKP-----QEFVSNKI---NAGMYIFNPSV 149
++ F+EKP +++V + N+GM++F SV
Sbjct: 171 VDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASV 205
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 29.5 bits (67), Expect = 2.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 32
+L H ++A + AG+ VI+ + A+ + L
Sbjct: 28 LLRHALDAALAAGLSRVIVVLGAEADAVRAAL 59
>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and
Galactoside O-acetyltransferase (GAT): MAT and GAT
catalyze the CoA-dependent acetylation of the 6-hydroxyl
group of their respective sugar substrates. MAT
acetylates maltose and glucose exclusively at the C6
position of the nonreducing end glucosyl moiety. GAT
specifically acetylates galactopyranosides. Furthermore,
MAT shows higher affinity toward artificial substrates
containing an alkyl or hydrophobic chain as well as a
glucosyl unit. Active MAT and GAT are homotrimers, with
each subunit consisting of an N-terminal alpha-helical
region and a C-terminal left-handed parallel alpha-helix
(LbH) subdomain with 6 turns, each containing three
imperfect tandem repeats of a hexapeptide repeat motif
(X-[STAV]-X-[LIV]-[GAED]-X).
Length = 169
Score = 28.9 bits (66), Expect = 3.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
TIG IG V I PGV I I
Sbjct: 120 TIGDNVWIGGGVIILPGVTIGDNSVI 145
>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 28.5 bits (64), Expect = 4.2
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 32
++ E + AG+ VI+ +R + + L
Sbjct: 33 LVRASAETALSAGLDRVIVVTGHRVAEAVEAL 64
>gnl|CDD|223694 COG0621, MiaB, 2-methylthioadenine synthetase [Translation,
ribosomal structure and biogenesis].
Length = 437
Score = 29.1 bits (66), Expect = 4.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 3 LHQIEALVEAGVREVIL 19
L +++ LV GV+E++L
Sbjct: 179 LKEVKRLVAQGVKEIVL 195
>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
Length = 183
Score = 28.6 bits (64), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGV 251
NV + A I PG IG NV + G V+ V
Sbjct: 135 NVWIGGRAVINPGVTIGDNVVVASGAVVTKDV 166
>gnl|CDD|224578 COG1664, CcmA, Integral membrane protein CcmA involved in cell
shape determination [Cell envelope biogenesis, outer
membrane].
Length = 146
Score = 28.0 bits (63), Expect = 4.7
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 217 IVGNVLVDPTATIGPGCRI-----GPNVTIGPGVVIEGGVCIKRST---ILRDAIVKSH 267
+ GN+L + PG R+ +T+ G + EG + T +R + +
Sbjct: 81 VEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDCEMLEETEAAPVRGSCNEEE 139
>gnl|CDD|99907 cd05565, PTS_IIB_lactose, PTS_IIB_lactose: subunit IIB of enzyme
II (EII) of the lactose-specific
phosphoenolpyruvate:carbohydrate phosphotransferase
system (PTS) found in Firmicutes as well as
Actinobacteria. In this system, EII is a
lactose-specific permease with two cytoplasmic domains
(IIA and IIB) and a transmembrane channel IIC domain.
The IIC and IIB domains are expressed as a single
protein from the lac operon. The IIB domain fold
includes a central four-stranded parallel open twisted
beta-sheet flanked by alpha-helices on both sides. The
seven major PTS systems with this IIB fold include
lactose, chitobiose/lichenan, ascorbate, galactitol,
mannitol, fructose, and a sensory system with
similarity to the bacterial bgl system.
Length = 99
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 17 VILAVSYRAEQMEDELTVETKKLGISLV 44
VILA + DEL +T +LGI LV
Sbjct: 51 VILAP--QMASYYDELKKDTDRLGIKLV 76
>gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of
RNA. In addition to its role in mRNA degradation, RNase
E has also been implicated in the processing of rRNA,
and the maturation of tRNA, 10Sa RNA and the M1
precursor of RNase P. RNase E associates with PNPase (3'
to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and
enolase (glycolytic enzyme) to form the RNA
degradosome. RNase E tends to cut mRNA within
single-stranded regions that are rich in A/U
nucleotides. The N-terminal region of RNase E contains
the catalytic site. Within the conserved N-terminal
domain of RNAse E and RNase G, there is an S1-like
subdomain, which is an ancient single-stranded
RNA-binding domain. S1 domain is an RNA-binding module
originally identified in the ribosomal protein S1. The
S1 domain is required for RNA cleavage by RNase E. RNase
G is paralogous to RNase E with an N-terminal catalytic
domain that is highly homologous to that of RNase E.
RNase G not only shares sequence similarity with RNase
E, but also functionally overlaps with RNase E. In
Escherichia coli, RNase G is involved in the maturation
of the 5' end of the 16S rRNA. RNase G plays a secondary
role in mRNA decay.
Length = 88
Score = 26.8 bits (60), Expect = 5.7
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 204 RQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPG 244
+K KLLKEG I+ V+ +P T GP R+ N+++ PG
Sbjct: 50 HKKIAKLLKEGQEILVQVVKEPIGTKGP--RLTTNISL-PG 87
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 28.4 bits (64), Expect = 6.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 111 KYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKE 163
K + L EHG +E ++ E + N + NP V D E+K +KE
Sbjct: 247 KTALKLIKEHGDLEKVLKARGEDIENYDEIREFFLNPPVTDDYELKWRKPDKE 299
>gnl|CDD|140294 PTZ00268, PTZ00268, glycosylphosphatidylinositol-specific
phospholipase C; Provisional.
Length = 380
Score = 28.3 bits (63), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 184 MDVGQPRDFLKGMCLYLNSLRQKRPK-------LLKEG 214
MD + + GMC+YLN LR R + L EG
Sbjct: 344 MDGTTETNAV-GMCVYLNILRASRLREDSSAAPSLNEG 380
>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
hexapeptide repeat family. This family of proteins
contains copies of the Bacterial transferase hexapeptide
repeat family (pfam00132) and is only found in operons
encoding the phosphonate C-P lyase system (GenProp0232).
Many C-P lyase operons, however, lack a homolog of this
protein.
Length = 204
Score = 27.4 bits (61), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIKR 255
IG G I P VTIG G VI G + +
Sbjct: 117 IGHGAVILPGVTIGNGAVIAAGAVVTK 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.422
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,729,450
Number of extensions: 1964772
Number of successful extensions: 2450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 240
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)