RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9164
(380 letters)
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 160 bits (408), Expect = 1e-47
Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 15/195 (7%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++L ++ L V E I+ S A+ ++ L + K +V E G L +
Sbjct: 47 IILRTMKLL-SPHVSEFIIVASRYADDIDAFL--KDKGFNYKIVRHDRPE-KGNGYSLLV 102
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
AK+ + + F + D + + + + + + +
Sbjct: 103 AKNHVE---DRFILTMGDHVYSQ---QFIEKAVRGEGVIADREPRFVDIGEATKIRVED- 155
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMEL- 179
G + + +E + ++ G ++ + S+ + E K E+ + K +L +
Sbjct: 156 GRVAKIGKDLRE--FDCVDTGFFVLDDSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVD 212
Query: 180 KGFWMDVGQPRDFLK 194
WMDV D +
Sbjct: 213 GELWMDVDTKEDVRR 227
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 159 bits (403), Expect = 9e-47
Identities = 36/205 (17%), Positives = 78/205 (38%), Gaps = 28/205 (13%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ +QIE L E G+ ++I+ V Y EQ + +K G+ LVF+ + L L
Sbjct: 58 LIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK----EKYGVRLVFNDKYADYNNFYSLYL 113
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
K+ L + + + + + +N T E+ + ++Y +
Sbjct: 114 VKEELA---NSYVIDADNYLFK-------NMFRNDLTRSTYFSVYREDCTNEWFLVYGDD 163
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI----------EIKPTSIEKEIFPLMSK 170
++ I + + +I +G+ ++ ++I + K
Sbjct: 164 YKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIK 220
Query: 171 EKQLYAMELKG-FWMDVGQPRDFLK 194
E +Y EL+G ++ +D+ K
Sbjct: 221 ELDVYVEELEGNSIYEIDSVQDYRK 245
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 163 bits (414), Expect = 1e-46
Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 45/350 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPL-GTAGPLA 59
++ +QIE L + G+R++ + VS + ++ +K + + + + GT +
Sbjct: 33 LIEYQIEYLRKCGIRDITVIVSSKNKEYF-------EKKLKEISIVTQKDDIKGTGAAIL 85
Query: 60 LAKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLY 117
AK + ++ D+ ++++ +N I+ +V P YGV++
Sbjct: 86 SAKF-----NDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKVSNPKDYGVLVL 135
Query: 118 NEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKE-----IFPLMSKEK 172
+ + IEKP+ SN INAG+Y N + ++ S E LM+K+
Sbjct: 136 DNQNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAINLMAKDH 195
Query: 173 QLYAMELKGFWMDVGQPRDFLKGMCLYL-NSLRQKRPKLLKEGDGIVGNVLVDPTATIGP 231
++ +E +G+WMD+G+P + + L N + + +++ I G V+++ A I
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKS 255
Query: 232 GCR------IGPNVTIGPGVVIEGG------------VCIKRSTILRDAIVKSHSWLEGC 273
G IG IGP + V +K S I+ + + S++
Sbjct: 256 GTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDS 315
Query: 274 IIGWKCVVGQWVRMEN-ITVLGECIIGWKCVVGQWVRMENITVLGEDVIV 322
+I G + N E + K R + +G V
Sbjct: 316 VIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRT 365
Score = 32.2 bits (74), Expect = 0.30
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 11/43 (25%)
Query: 227 ATIGPGCRIGPN------VTIGPGVVIEGGVCIKRSTILRDAI 263
A IG R G N V IG I G + + RD
Sbjct: 357 AFIGGHVRTGINVTILPGVKIGAYARIYPG-----AVVNRDVG 394
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 120 bits (303), Expect = 5e-32
Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMED----------ELTV----------ETKKLG 40
+L H ++ G+++ I+ Y+ +++ ++T +
Sbjct: 35 ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEP 94
Query: 41 ISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGT 100
++ + T G L + + K E F D + D K + FHK HGK+ T
Sbjct: 95 WNVTLVDTGDSSMTGGRLKRVAEYV-KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153
Query: 101 IVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160
+ T P ++G L + G + SF EKP+ IN G ++ NPSV+D I+ T+
Sbjct: 154 L--TATFPPGRFGA-LDIQAGQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTW 209
Query: 161 EKEIFPLMSKEKQLYAMELKGFW--MDVGQPRDFLKGM 196
E+E ++++ +L A E GFW MD + + +L+G+
Sbjct: 210 EQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGL 247
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase
binding motif, pyrophosphorylase; HET: GTP; 2.80A
{Methanocaldococcus jannaschii}
Length = 196
Score = 100 bits (250), Expect = 3e-25
Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 20/156 (12%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ + + L+++ V + +A S + ++ + + + + G L
Sbjct: 29 LIDYVVSPLLKSKVNNIFIATSPNTPKTKEYI--NSAYKDYKNIVVIDTSGKGYIEDLNE 86
Query: 61 AKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYN 118
+ EPF V++SD+I +V + + V V++
Sbjct: 87 CIGYFS---EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEA-------LAVMIPK 136
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE 154
E P + + A + + +P + E
Sbjct: 137 E------KYPNPSIDFNGLVPADINVVSPKHGYQKE 166
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 101 bits (253), Expect = 1e-23
Identities = 70/351 (19%), Positives = 128/351 (36%), Gaps = 72/351 (20%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H ++ + + V ++AE +E+ L F ++E LGT + +
Sbjct: 41 MLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL-------AGQTEFVTQSEQLGTGHAVMM 93
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
+ IL V+ D P K+L+ FH NH TI+ + + P YG
Sbjct: 94 TEPILEGLSGHTLVIAGDT----PLITGESLKNLIDFHINHKNVATILTAETDNPFGYGR 149
Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
++ N++ + +E E +IN G Y+F+ L I + + E
Sbjct: 150 IVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITD 209
Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
+ + + +++ A LK F +G +N K +
Sbjct: 210 VIGIFRETGEKVGAYTLKDFDESLG------------VNDRVALATAESVMRRRINHKHM 257
Query: 212 KEGDGIVGNV-LVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
G V V+P AT I I P V I V+++G I + ++ + ++
Sbjct: 258 VNG------VSFVNPEATYIDIDVEIAPEVQIEANVILKGQT-----KIGAETVLTNGTY 306
Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
+ IG V+ +++ E + VG + + + LG V
Sbjct: 307 VVDSTIGAGAVITN-------SMIEESSVADGVTVGPYAHIRPNSSLGAQV 350
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 100 bits (251), Expect = 2e-23
Identities = 63/351 (17%), Positives = 125/351 (35%), Gaps = 64/351 (18%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
ML H + A+ + + +I+ + + +++ + LG ++ + ++ PLGT +
Sbjct: 42 MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLC 101
Query: 61 AKDILNKSQE-PFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
L V + D P DL++ H+ T++ T +++P YG
Sbjct: 102 GLSALPDDYAGNVVVTSGDT----PLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYG 157
Query: 114 VVLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE---- 163
+L + + + +E P + ++NAG+Y F+ + L + + ++E
Sbjct: 158 RILRTQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLT 217
Query: 164 -IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKL 210
+ ++ + + ++A + + G +N+ Q
Sbjct: 218 DVIAILRSDGQTVHASHVDDSALVAG------------VNNRVQLAELASELNRRVVAAH 265
Query: 211 LKEGDGIVGNVLVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSW 269
G +V DP T I IG + I PG + G I +V +
Sbjct: 266 QLAGVTVV-----DPATTWIDVDVTIGRDTVIHPGTQLLGRT-----QIGGRCVVGPDTT 315
Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
L +G V + T IG VG + + T LG D
Sbjct: 316 LTDVAVGDGASVVR-------THGSSSSIGDGAAVGPFTYLRPGTALGADG 359
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics,
national institute allergy and infectious diseases; HET:
GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A
1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Length = 459
Score = 91.0 bits (227), Expect = 3e-20
Identities = 71/355 (20%), Positives = 126/355 (35%), Gaps = 69/355 (19%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+A ++ G + V L + E ++ L SL + + E LGT +
Sbjct: 38 MVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLA------DPSLNWVLQAEQLGTGHAMQQ 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
A E +L D+ P + L++ G ++ +++ PS YG
Sbjct: 92 AAPHF-ADDEDILMLYGDV----PLISVDTLQRLLAAKPEGG--IGLLTVKLDNPSGYGR 144
Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
++ G + +E + N+IN G+ + N L R + + + E
Sbjct: 145 IVREN-GDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITD 203
Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
I L + K++ + G +N+ Q + KLL
Sbjct: 204 IIALAHADGKKIATVHPTRLSEVEG------------VNNRLQLSALERVFQTEQAEKLL 251
Query: 212 KEGDGIV--GNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIKRSTILRDAI 263
G ++ + T G I NV +G V I G +K I D+
Sbjct: 252 LAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSE 311
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
+ ++ LE + C VG + R+ L E VG +V ++ LG+
Sbjct: 312 ISPYTVLEDARLDANCTVGPFARLRPGAELAE-----GAHVGNFVEIKK-ARLGK 360
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 89.9 bits (224), Expect = 6e-20
Identities = 67/355 (18%), Positives = 127/355 (35%), Gaps = 69/355 (19%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ H I+ + G + L + + M L + + + E LGTA +
Sbjct: 35 MVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLA------NEQVNWVLQTEQLGTAHAVQQ 88
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF------KDLVSFHKNHGKEGTIVVTQVEEPSKYGV 114
A K E VL D P + L+ +G ++ ++ P+ YG
Sbjct: 89 AAPFF-KDNENIVVLYGDA----PLITKETLEKLIEAKPENG--IALLTVNLDNPTGYGR 141
Query: 115 VLYNEHGCIESFIE----KPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKE----- 163
++ G + + +E ++ ++N G+ + + + + + + + E
Sbjct: 142 IIREN-GNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTD 200
Query: 164 IFPLMSKE-KQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQ-----------KRPKLL 211
+ L +++ Q+ A++ G N+ Q + KLL
Sbjct: 201 LIALANQDNCQVVAVQATDVMEVEG------------ANNRLQLAALERYFQNKQASKLL 248
Query: 212 KEGDGIV--GNVLVDPTATIGPGCRIGPNV------TIGPGVVIEGGVCIKRSTILRDAI 263
EG I + T G I NV +G V I G +K I D
Sbjct: 249 LEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVE 308
Query: 264 VKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGE 318
+K +S LE I+G K +G + R+ L + VG +V ++ + +G+
Sbjct: 309 IKPYSVLEDSIVGEKAAIGPFSRLRPGAELAA-----ETHVGNFVEIKK-STVGK 357
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 88.4 bits (220), Expect = 2e-19
Identities = 55/298 (18%), Positives = 103/298 (34%), Gaps = 75/298 (25%)
Query: 85 FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA-- 140
++ ++ H + G + TI +V E + +GV+ NE I FIEKP + N
Sbjct: 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPPGIPGNEGF 201
Query: 141 -----GMYIFNPSVL----DRIEIKPTSIE---KEIFPLMSKEKQLYA-----------M 177
G+Y+F+ L R PTS K+I P + + + A
Sbjct: 202 ALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDF 261
Query: 178 ELKGFWMDVG---------------QPRDFLKGMCLY------LNSLRQKRP-KLLKEGD 215
E + +W DVG P + +Y P K + + +
Sbjct: 262 EHEPYWRDVGTIDAYWQANIDLTDVVPD-----LDIYDKSWPIWTYAEITPPAKFVHDDE 316
Query: 216 GIVGNVLVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLE 271
G+ + ++ + C I G + + GV ++ + +L + H+ L
Sbjct: 317 DRRGSAV---SSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS 373
Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVV---GQWVRMENITVLGEDVIVQDEL 326
+I V+ E I+G + I ++ + +I + +L
Sbjct: 374 NVVIDHGVVIP-----EG------LIVGEDPELDAKRFRRTESGICLITQSMIDKLDL 420
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 78.8 bits (195), Expect = 3e-16
Identities = 48/300 (16%), Positives = 100/300 (33%), Gaps = 67/300 (22%)
Query: 85 FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINA-- 140
++ + H+ + T+ + + + +G++ +E G I F EKPQ +
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDT 211
Query: 141 -------------------GMYIFNPSVL-DRIEIKPTSIE---KEIFPLM-SKEKQLYA 176
G+Y+ + V+ + + K E+ P S ++ A
Sbjct: 212 TILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQA 271
Query: 177 MELKGFWMDVGQPR-------DFLKGMCLYLNSLRQK-----RPKLL---KEGDGIVGNV 221
G+W D+G K + + +P+ L K D V +
Sbjct: 272 YLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDS 331
Query: 222 LVDPTATIGPGCRI-GPNVT---IGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGW 277
+ IG GC I + +G I G I+ S ++ ++ + +
Sbjct: 332 V------IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKG 385
Query: 278 K--CVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
+G+ ++ II +G +N+ ++ +D VQ+ G +
Sbjct: 386 SVPIGIGKNCHIKR------AIIDKNARIG-----DNVKIINKDN-VQEAARETDGYFIK 433
Score = 30.3 bits (69), Expect = 1.0
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 21/61 (34%)
Query: 227 ATIGPGCRIGPNVTIG------------PGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI 274
A I RIG NV I G I+ G+ +++DA++ S G I
Sbjct: 400 AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVT----VIKDALIPS-----GII 450
Query: 275 I 275
I
Sbjct: 451 I 451
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 68.2 bits (167), Expect = 3e-13
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 21/131 (16%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR---------------DAIV 264
NV ++ I GC I NV I G I + + +A++
Sbjct: 20 NVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALI 79
Query: 265 KSHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
++ + + IIG G V T+ IG +G +++ +G V +
Sbjct: 80 RTENVIYGDTIIGDNFQTGHKV-----TIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIH 134
Query: 324 DELYVNGGQVL 334
++V ++
Sbjct: 135 SNVFVGEKSII 145
Score = 42.4 bits (100), Expect = 1e-04
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 233 CRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-EGCIIGWKCVVGQWVRM--- 287
I + I GV+I V I I I++ + + +G IG + ++G+++
Sbjct: 3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYN 62
Query: 288 ENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
+ I IIG ++ + T++G++ ++ +
Sbjct: 63 DRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIREN 106
Score = 37.8 bits (88), Expect = 0.003
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 23/111 (20%)
Query: 213 EGDGIVGNVLVDPTATIGPGCRIGPNVTIGP------------------GVVIEGGVCIK 254
+ V + IG +IG I +I+ V +
Sbjct: 93 DNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLF 152
Query: 255 RSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+L + + L G I V+ VL I +VG
Sbjct: 153 PHVVLTNDPTPPSNELLGVTIELFAVIA-----ARSVVLPGIHINEDALVG 198
Score = 36.6 bits (85), Expect = 0.009
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
+ + +K P ++ E I ++ IG + G VTI I V I
Sbjct: 63 DRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGT----- 117
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE-CIIGWKCVVGQWVRMENITVLGED 319
I +G +V + + +GE II + V + N +
Sbjct: 118 -----------LSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSN 166
Query: 320 VIVQDELYVN---GGQ--VLPHKSIG 340
++ + + + VLP I
Sbjct: 167 ELLGVTIELFAVIAARSVVLPGIHIN 192
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 60.4 bits (147), Expect = 2e-10
Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 36/125 (28%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
GI +V A + P +G I G I GV I C+I
Sbjct: 121 GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSI----------------GAHCVI 164
Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV-----------------GQWVRMENI--TV 315
G + V+G+ + +T+ + IG + + G W ++ I
Sbjct: 165 GARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVT 224
Query: 316 LGEDV 320
+G+DV
Sbjct: 225 IGDDV 229
Score = 58.8 bits (143), Expect = 7e-10
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 27/101 (26%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ PTA + + P+ ++G VIE G I G IG CV+G
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIG----------------AGVSIGAHCVIG 165
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
+IG + V + + +G V +Q
Sbjct: 166 A-----------RSVIGEGGWLAPRVTLYHDVTIGARVSIQ 195
Score = 27.2 bits (61), Expect = 9.9
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 217 IVGNVLVDPTATIGPGCRIG------PNVTIGPGVVIEGGVCIKRS 256
+ V + +A IG C + ++ I V + G + RS
Sbjct: 271 MAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRS 316
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 60.4 bits (147), Expect = 2e-10
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 37/126 (29%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
GI ++ PTA I I P + + I G +I
Sbjct: 126 GIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHI----------------GSGSVI 169
Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV------------------GQWVRMENI--T 314
G VG+ + + + IG + ++ GQ ++++
Sbjct: 170 GAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKV 229
Query: 315 VLGEDV 320
++ +DV
Sbjct: 230 IIEDDV 235
Score = 58.4 bits (142), Expect = 1e-09
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 27/101 (26%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ PTA I P I +V I P V+ + C IG V+G
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVG----------------SACHIGSGSVIG 170
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
+G + V + +G+ VI+Q
Sbjct: 171 A-----------YSTVGEHSYIHPRVVIRERVSIGKRVIIQ 200
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 59.1 bits (144), Expect = 6e-10
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 36/125 (28%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCII 275
I + ++D TA +G IG N I GV + V I GC +
Sbjct: 99 NIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVII----------------GAGCFV 142
Query: 276 GWKCVVGQWVRME-NITVLGECIIGWKCVV-----------------GQWVRMENI--TV 315
G +G R+ N+T+ E IG C++ G WV++ I +
Sbjct: 143 GKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVI 202
Query: 316 LGEDV 320
+G+ V
Sbjct: 203 IGDRV 207
Score = 57.2 bits (139), Expect = 2e-09
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 27/101 (26%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ P+A I ++G NV+IG VIE GV + + IIG C VG
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELG----------------DNVIIGAGCFVG 143
Query: 283 QWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQ 323
+ IG + V + + +G++ ++Q
Sbjct: 144 K-----------NSKIGAGSRLWANVTIYHEIQIGQNCLIQ 173
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural
genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Length = 255
Score = 53.9 bits (128), Expect = 2e-08
Identities = 22/207 (10%), Positives = 55/207 (26%), Gaps = 15/207 (7%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+ H + + L + + + +LGI + E +
Sbjct: 32 LFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELHTETRGQAETV 91
Query: 61 AKDILNKSQEPFFVLNSDIICDFP-FKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNE 119
+ +++ S + + F+ F + +
Sbjct: 92 TLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEH 151
Query: 120 HGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIK---------PTSIEKEIFP---- 166
G + + +S+ + G+Y FN + E I P
Sbjct: 152 AGSTKVIQTAEKNPISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNE 211
Query: 167 LMSKEKQLYAMEL-KGFWMDVGQPRDF 192
L+ K ++ + + + G P ++
Sbjct: 212 LIQKGLNIHYHLIARHEVIFCGVPDEY 238
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 53.7 bits (130), Expect = 3e-08
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 23/147 (15%)
Query: 70 EPFFVLNSDIICD--------FPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEHG 121
EP V+ D+I D +++ G I+V V + + YGVV
Sbjct: 129 EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADVTAYGVVDCKGVE 187
Query: 122 C-------IESFIEKP--QEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPL 167
+ +EKP SN G Y+ + + + P EI +
Sbjct: 188 LAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDM 247
Query: 168 MSKEKQLYAMELKGFWMDVGQPRDFLK 194
+ +++ + A +KG D G +++
Sbjct: 248 LIEKETVEAYHMKGKSHDCGNKLGYMQ 274
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 51.2 bits (123), Expect = 9e-08
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILR 260
N LRQK + ++ G + P+A + P R+G V + GV I I I+
Sbjct: 81 NRLRQKLGRKARD-HGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIIN 139
Query: 261 DAIVKSHSWLEGCIIGWKCVVGQWVR-MENITVLGECIIGWKCVVG-QWVRMENITVLGE 318
G ++ C +G + G +G + +G + +T+ G
Sbjct: 140 T----------GAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI-GA 188
Query: 319 DVIV 322
D IV
Sbjct: 189 DTIV 192
Score = 48.9 bits (117), Expect = 6e-07
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
+++ A + CR+G +GP + GGV + +R+ + A V + G IG
Sbjct: 135 LAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARV-----IPGVTIGAD 189
Query: 279 CVVG 282
+VG
Sbjct: 190 TIVG 193
Score = 35.4 bits (82), Expect = 0.017
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST 257
+ G V V A +G G R+ P VTIG ++ G + R
Sbjct: 162 LAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDL 202
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 51.3 bits (124), Expect = 1e-07
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 70 EPFFVLNSDIICDFPF-----KDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGC 122
EPF V+ +D +C K + S ++ + + + +V EE SKYGV+
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEE 180
Query: 123 ----IESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPLMSKE 171
I+ +EKP + SN G YI P + + + EI +K
Sbjct: 181 GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKR 240
Query: 172 KQLYAMELKGFWMDVGQPRDFLK 194
K++ A + KG D G +++
Sbjct: 241 KRIIAYQFKGKRYDCGSVEGYIE 263
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 14/125 (11%)
Query: 201 NSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRI--GPNVTIGPGVVIEGGVCIKRSTI 258
N +R+K + + E +G L+ +A I P + + I P VVI I++ I
Sbjct: 57 NEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVI 115
Query: 259 LRDAIVKSHSWLEGCIIGWKCVVGQWV-RMENITVLGECIIGWKCVVGQWVRMENITVLG 317
L +I +CV+G++ G IG C +G + L
Sbjct: 116 LN----------TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLA 165
Query: 318 EDVIV 322
+D I+
Sbjct: 166 DDSIL 170
Score = 48.0 bits (115), Expect = 8e-07
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWLEGCIIGWK 278
V+++ ++ I C IG + G G V I K + ++ V L +
Sbjct: 113 GVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCV-----LPNLSLADD 167
Query: 279 CVVG 282
++G
Sbjct: 168 SILG 171
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 211 LKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSW 269
++E GI+ + P I +I V + VIE I + S + A +
Sbjct: 90 VEENAGIL----IMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGN-- 143
Query: 270 LEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
IG C +G N VL + ++G
Sbjct: 144 ---VKIGKNCFLGI-----NSCVLPNLSLADDSILG 171
Score = 35.7 bits (83), Expect = 0.011
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST 257
GNV + +G + PN+++ ++ GG + ++
Sbjct: 140 CAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQ 180
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 50.5 bits (122), Expect = 3e-07
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 17/141 (12%)
Query: 70 EPFFVLNSDIICDFP---FKDLVSFHKNHGKEGTIVVTQV--EEPSKYGVVLYNEHGC-- 122
EPF VL D K +V + G I +V ++ +YG++
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVL 191
Query: 123 --IESFIEKPQ--EFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEI-----FPLMSKEKQ 173
++ +EKP SN G YI P V+ +E + EI M ++
Sbjct: 192 TEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQP 251
Query: 174 LYAMELKGFWMDVGQPRDFLK 194
+ + +G D G F++
Sbjct: 252 FHGVTFQGTRYDCGDKAGFIQ 272
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 50.1 bits (119), Expect = 4e-07
Identities = 30/250 (12%), Positives = 61/250 (24%), Gaps = 62/250 (24%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDE---------------LTVETKKLGISLVF 45
++ + + + AG ++ + + E+ E +
Sbjct: 35 IMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCP 94
Query: 46 SHENEPLGTAGPLALAKDILNKSQEPFFVLNSD-IICDFPFKDLVSFHKNHGKEGTIVVT 104
+P GT + + +D + EPF V+N+D F+ L +
Sbjct: 95 EGREKPWGTNHAVLMGRDAIR---EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCM 151
Query: 105 QV---------EEPSKYGVVLYNEHGCIESF-----IEKPQEFV--------------SN 136
GV +E + IE+ +
Sbjct: 152 VGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDA 211
Query: 137 KINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQL---------------YAMELKG 181
++ M+ F P D E + E + ++
Sbjct: 212 PVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTA 271
Query: 182 FWMDVGQPRD 191
W V D
Sbjct: 272 RWFGVTYSDD 281
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
acetyl transferase, transferase; HET: ACO U5P UDP PE4;
1.43A {Bordetella petrii} PDB: 3mqh_A*
Length = 192
Score = 48.4 bits (115), Expect = 6e-07
Identities = 17/101 (16%), Positives = 37/101 (36%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ +G RIG V I V + V ++ ++V ++ + I K
Sbjct: 39 GCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKS 98
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDV 320
+ + T+ C + +G++ + V+ +DV
Sbjct: 99 EYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDV 139
Score = 46.5 bits (110), Expect = 3e-06
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ PTA + G RIG + I V I G IG C
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHI----------------------CGGAEIGEGC 40
Query: 280 VVGQWVRMENITVLGE-CIIGWKCVVGQWVRMENITVLGEDVIVQDELY 327
+GQ V + N +G I V V +E+ G ++ +
Sbjct: 41 SLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYN 89
Score = 40.7 bits (95), Expect = 2e-04
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 220 NVLVDPTATIGPGCRIGP------NVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL-E 271
+VD A IG RI IG G + V + R I ++++ + +
Sbjct: 9 TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD 68
Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWK----CVVGQWVRMENITVLGEDVIVQDELY 327
+ G + N+ I +V Q + + + +
Sbjct: 69 NVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAF 128
Query: 328 VNGGQVL 334
V G V+
Sbjct: 129 VGAGAVV 135
Score = 39.6 bits (92), Expect = 6e-04
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 27/138 (19%)
Query: 236 GPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE 295
G TI P +++ EG IG + WV + G
Sbjct: 1 GHMATIHPTAIVD----------------------EGARIGAHSRIWHWV-----HICGG 33
Query: 296 CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDVIVQDE 355
IG C +GQ V + N +G V +Q+ + V L + +
Sbjct: 34 AEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAA 93
Query: 356 LYVNGGQVLPHKSIGSSV 373
+ G+++
Sbjct: 94 IERKSEYRDTIVRQGATL 111
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 47.7 bits (114), Expect = 2e-06
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
+ PTA I PG ++ V +GP ++ V I T + SHS +EG IG +
Sbjct: 25 IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTI-----GSHSVIEGHTTIGEDNRI 79
Query: 282 GQ 283
G
Sbjct: 80 GH 81
Score = 34.6 bits (80), Expect = 0.046
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
G I + +++ TIG RIG + IG I I
Sbjct: 56 GARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTI 115
Query: 254 KRSTILRDAI--VKSHSWL-EGCIIGWKCVVGQWVRMENITVLG-------ECIIGWKCV 303
T+ + + +W+ IG C VG V + + + I+G
Sbjct: 116 HTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSG 175
Query: 304 VGQWVR 309
V Q+VR
Sbjct: 176 VHQYVR 181
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 223 VDPTATIGPGCRIGPNV------TIGPGVVIEGGVCI 253
V TIG IG + TIG I +
Sbjct: 49 VGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 47.2 bits (113), Expect = 3e-06
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CII 275
I + V PTA + G IG N IGP ++ V I T+L KSH + G I
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL-----KSHVVVNGHTKI 56
Query: 276 GWKCVVGQ 283
G + Q
Sbjct: 57 GRDNEIYQ 64
Score = 34.5 bits (80), Expect = 0.038
Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
G+G + +V+V+ IG I V IG I V I
Sbjct: 39 GEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTI 98
Query: 254 KRSTILRDAI--VKSHSWL-EGCIIGWKCVVGQWVRMENITVLG-------ECIIGWKCV 303
R T+ + V S + L I C VG + N L IIG
Sbjct: 99 HRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTA 158
Query: 304 VGQWVR 309
V Q+
Sbjct: 159 VHQFCI 164
Score = 28.7 bits (65), Expect = 2.8
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 223 VDPTATIGPGCRIGPNV------TIGPGVVIEGGVCI 253
V P IG G + +V IG I I
Sbjct: 32 VGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI 68
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 47.2 bits (113), Expect = 3e-06
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 221 VLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKC 279
+ + PTA I P + +V +GP +IEG V I+ TI+ + H + IG
Sbjct: 1 MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTII-----EGHVKICAGSEIGKFN 55
Query: 280 VVGQ 283
Q
Sbjct: 56 RFHQ 59
Score = 42.6 bits (101), Expect = 9e-05
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 33/163 (20%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIV-----------KSH 267
+V V P + I I I V I G I K + + A++ +
Sbjct: 18 SVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLL 77
Query: 268 SWLEGCIIGWKCVVGQWVRM------ENITVLGE-------CIIGWKCVVGQWVRMENIT 314
+ IG + ++ + ++ TV+G +G C++G + +
Sbjct: 78 TKTV---IGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGA 134
Query: 315 VLGEDVIVQDELYVN-GGQVLPHK--SIGSSLHMLGEDVIVQD 354
VL V + + + G V H+ +G + G +VQD
Sbjct: 135 VLAGHVTLGN--FAFISGLVAVHQFCFVGDYSMVAGLAKVVQD 175
Score = 37.2 bits (87), Expect = 0.006
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN-------------------VTIGPGVVIEGGVC 252
+G I G+V + + IG R IG +
Sbjct: 34 QEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSN 93
Query: 253 IKRSTILRDA-IVKSHSWL-EGCIIGWKCVVGQWVRMENITVLG-------ECIIGWKCV 303
I + T ++ + ++ +G C++G + + VL I
Sbjct: 94 IHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVA 153
Query: 304 VGQWVR 309
V Q+
Sbjct: 154 VHQFCF 159
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 46.9 bits (112), Expect = 4e-06
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
+ P+A I G ++G +V I + I + ++ K + + IG V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVI-----KQGARILSDTTIGDHSRV 61
Query: 282 GQ 283
Sbjct: 62 FS 63
Score = 42.6 bits (101), Expect = 9e-05
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 34/164 (20%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIV-----------KSH 267
+V+++ A + +IG NV I G I I S + AIV +
Sbjct: 22 DVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQK 81
Query: 268 SWLEGCIIGWKCVVGQWVRM-------ENITVLGE-------CIIGWKCVVGQWVRMENI 313
S + IG + ++ + + T +G+ C I C++G + + N
Sbjct: 82 SGVV---IGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANN 138
Query: 314 TVLGEDVIVQDELYVN-GGQVLPHK--SIGSSLHMLGEDVIVQD 354
L V + D + GG H+ +G + G + QD
Sbjct: 139 ATLAGHVELGD--FTVVGGLTPIHQFVKVGEGCMIAGASALSQD 180
Score = 34.5 bits (80), Expect = 0.039
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 31/127 (24%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN-------------------VTIGPGVVIEGGVC 252
G+ I + TIG R+ V IG I
Sbjct: 38 GNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFAT 97
Query: 253 IKRSTILRDAIVK--SHSWL-EGCIIGWKCVVGQWVRMENITVLG-------ECIIGWKC 302
I T D + ++++ C I C++G + + N L ++G
Sbjct: 98 INSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLT 157
Query: 303 VVGQWVR 309
+ Q+V+
Sbjct: 158 PIHQFVK 164
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
UDP-N-acetylglucosamine acyltransferase, LPXA,
LEFT-handed B structure; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 46.9 bits (112), Expect = 4e-06
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEG-CIIGWKCVV 281
+ TA I P I V IG VI GV + L ++ L+G +G +
Sbjct: 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKL-----HNNVTLQGHTFVGKNTEI 58
Query: 282 GQ 283
Sbjct: 59 FP 60
Score = 42.6 bits (101), Expect = 1e-04
Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 31/162 (19%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKS----------HS 268
V + IG G ++ V + V ++G + K + I A++ + +S
Sbjct: 19 GVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYS 78
Query: 269 WLEGCIIGWKCVVGQWVRM-------ENITVLGE-------CIIGWKCVVGQWVRMENIT 314
L IG ++ ++ + T++G+ + CV+G + N
Sbjct: 79 ELI---IGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGV 135
Query: 315 VLGEDVIVQDELYVNGGQVLPHK--SIGSSLHMLGEDVIVQD 354
L + + D + + GG H+ I + G+ + +D
Sbjct: 136 TLAGHIEIGDYVNI-GGLTAIHQFVRIAKGCMIAGKSALGKD 176
Score = 34.2 bits (79), Expect = 0.060
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 30/126 (23%)
Query: 214 GDG--IVGNVLVDPTATIGPGCRIGPN------------------VTIGPGVVIEGGVCI 253
+G + NV + +G I P + IG +I I
Sbjct: 35 DEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMI 94
Query: 254 KRSTILRDAI--VKSHSWL-EGCIIGWKCVVGQWVRMENITVL-GECIIGWKCVVG---- 305
T + + L + CV+G + N L G IG +G
Sbjct: 95 NPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTA 154
Query: 306 --QWVR 309
Q+VR
Sbjct: 155 IHQFVR 160
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 46.7 bits (111), Expect = 6e-06
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCI 274
D VL+ P+A + P IG V++GP I V + L S + G
Sbjct: 2 DSRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKL-----YPSSHVFGNT 56
Query: 275 IGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNG 330
+ V + + G IG ++G V+G QD Y +G
Sbjct: 57 ELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHA------VVGVK--CQDLKYKHG 104
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase;
structural genomics, csgid; 1.70A {Bacillus anthracis}
PDB: 3cj8_A*
Length = 240
Score = 43.7 bits (103), Expect = 4e-05
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 5/147 (3%)
Query: 181 GFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVT 240
G W ++ D + +R + D ++P A I IG N
Sbjct: 52 GEWSEIKTILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAV 111
Query: 241 IGPGVVIEGGVCI-KRSTILRDAIVKSHSWLE-GCIIGWKCVVG---QWVRMENITVLGE 295
I I G I + S I +A++ + + C +G V+ + + + V +
Sbjct: 112 IMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD 171
Query: 296 CIIGWKCVVGQWVRMENITVLGEDVIV 322
+IG VV + V + V+ +V
Sbjct: 172 VVIGANVVVLEGVTVGKGAVVAAGAVV 198
Score = 30.6 bits (69), Expect = 0.71
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRST 257
V+V+ IG + VT+G G V+ G +
Sbjct: 165 PVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDV 202
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 44.1 bits (105), Expect = 4e-05
Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 50 EPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFP--FKDLVSFHKNHGKEGTIV-VTQV 106
+PLG + LA+ +L+ ++ V+ D + + + G G+++ +V
Sbjct: 114 KPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFG--GSVLCAVEV 171
Query: 107 --EEPSKYGVVLYNEHGC------IESFIEKP--QEFVSNKINAGMYIFNPSVLDRIEIK 156
+ SKYG+ ++ +EKP ++ S G Y+ + + D +
Sbjct: 172 SEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRI 231
Query: 157 PTSIEKEI------FPLMSKEKQLYAMELKGFWMDVGQPRDFLK 194
E+ L+ + ++ + +G D+G P ++
Sbjct: 232 TPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIP 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 82/219 (37%)
Query: 62 KDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQ------VEEPSK---- 111
KDIL+ ++ F + +F KD+ K+ ++++ +
Sbjct: 19 KDILSVFEDAF-------VDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKDAVSGT 64
Query: 112 ---YGVVLYNEHGCIESFIE----KPQEFVSNKI---------NAGMYI----------- 144
+ +L + ++ F+E +F+ + I MYI
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 145 -FNPSVLDRIEIKPTSIEKEIFPL----------M-------------SKEKQLYAMELK 180
F + R++ + + + L + K M+ K
Sbjct: 125 VFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 181 GFWMDVGQ---PRDFLKGMCLYLNSLRQKRPKLLKEGDG 216
FW+++ P L+ + L Q P D
Sbjct: 184 IFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDH 219
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 41.9 bits (99), Expect = 1e-04
Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L ++ +AG ++IL + A + + G +V E+ G A L +
Sbjct: 33 VLGATLDVARQAGFDQLILTLGGAASAVRAAM----ALDGTDVVV-VEDVERGCAASLRV 87
Query: 61 AKDILNKSQEPFFVLNSDI--ICDFPFKDLVSFHKNHG 96
A ++ ++ D + + ++
Sbjct: 88 ALARVHPRATGIVLMLGDQPQVAPATLRRIIDVGPATE 125
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Length = 496
Score = 41.5 bits (97), Expect = 4e-04
Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 12/100 (12%)
Query: 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI------KRSTILRDAIVK 265
++ + + + + A G + I VI V + + + + + +
Sbjct: 259 EDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQ 318
Query: 266 SHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+ ++ + CV + +G G
Sbjct: 319 ENCYIINSRLERNCVTAHG------GKIINAHLGDMIFTG 352
Score = 29.6 bits (66), Expect = 1.7
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 16/86 (18%)
Query: 207 RPKLLKEGDGIVGNVLVDPTATIGPGC-----------RIGPNVTIGPGVV-----IEGG 250
+ + + +V A +G G R+ N G +
Sbjct: 289 KGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM 348
Query: 251 VCIKRSTILRDAIVKSHSWLEGCIIG 276
+ ++ L+ + +GC++
Sbjct: 349 IFTGFNSFLQGSESSPLKIGDGCVVM 374
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI,
protein structure initi nysgrc; 2.30A {Helicobacter
pylori}
Length = 308
Score = 40.6 bits (96), Expect = 4e-04
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 40/149 (26%)
Query: 25 AEQMEDELTVETKKLGISLVFSHENEPLG--TAGPLALAKDILNKSQEP-FFVLNSD-II 80
E++++E+ ++ G L E L TA +AL+ L +E V SD +I
Sbjct: 67 LEEIKNEIKNKSV--GFLL------ESLSKNTANAIALS--ALMSDKEDLLIVTPSDHLI 116
Query: 81 CDFP-FKDLVSFHKNHGKEGTIV---VTQVEEPSK----YGVVLYNEHG---CIESFIEK 129
D +++ + + ++G +V V+ K +G Y E ++ FIEK
Sbjct: 117 KDLQAYENAIKKAIDLAQKGFLVTFGVS----IDKPNTEFG---YIESPNGLDVKRFIEK 169
Query: 130 P-----QEFVSNKI---NAGMYIFNPSVL 150
P EF + N+GM++F V
Sbjct: 170 PSLDKAIEFQKSGGFYFNSGMFVFQAGVF 198
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta
helix, gamma carbonic anhydrase, disulfide dependent
activity; 1.10A {Thermosynechococcus elongatus} PDB:
3kwe_A 3kwc_A
Length = 213
Score = 39.4 bits (92), Expect = 9e-04
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 25/153 (16%)
Query: 202 SLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEG----GVCIKRST 257
S P+ I V + + RI V I PG I I T
Sbjct: 34 SRDLAEPE-------IAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRT 86
Query: 258 ILRDAIV----KSHSWLEGCIIGWKCVVGQWVRMENITVL-GECIIGWKCVVGQWVRMEN 312
++D +V + + + +G V + ++ ++ G IG C +G
Sbjct: 87 NIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIG----F-R 141
Query: 313 ITVL----GEDVIVQDELYVNGGQVLPHKSIGS 341
TV G +V + + ++ P K + S
Sbjct: 142 STVFNARVGAGCVVMMHVLIQDVEIPPGKYVPS 174
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.38A {Salmonella paratyphi} PDB:
2f9c_A
Length = 334
Score = 39.5 bits (91), Expect = 0.001
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI--KRSTILRDAIVKSHSWLEGC 273
+ + V A I C + +V +G + GG + R I A ++ +E
Sbjct: 227 TLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQ 286
Query: 274 I-IGWKCVVGQWVR-----MENITVLGECIIGWKCVVGQWVRMENI 313
+ I + V + + GE I +VG + +
Sbjct: 287 VEISGRAAVIAFDDNTIHLRGPKVINGEDRITRTPLVGSLLEHHHH 332
Score = 30.6 bits (68), Expect = 0.80
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 19/149 (12%)
Query: 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGC 273
IV V + ATI + +IEG I A V H
Sbjct: 162 HSRIVHQVQLYGNATITHAFIEH-RAEVFDFALIEGDKDNN-VWICDCAKVYGH-----A 214
Query: 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQV 333
+ T+ + ++ VL V+V V GG +
Sbjct: 215 RVIAGTEED-----AIPTLRYSSQVAEHALIEGNC------VLKHHVLVGGHAEVRGGPI 263
Query: 334 LPHKSIGSSLH-MLGEDVIVQDELYVNGG 361
L + H + +++++ ++ ++G
Sbjct: 264 LLDDRVLIEGHACIQGEILIERQVEISGR 292
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/79 (13%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
+L + ++I+ + A+++ +++ + G+ +V ++ LG + L
Sbjct: 33 LLGATLAMARRCPFDQLIVTLGGAADEVLEKV----ELDGLDIVL-VDDAGLGCSSSLKS 87
Query: 61 AKDILNKSQEPFFVLNSDI 79
A ++ + E ++ D
Sbjct: 88 ALTWVDPTAEGIVLMLGDQ 106
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 38.6 bits (91), Expect = 0.002
Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 56/187 (29%)
Query: 50 EPLG--TAGPLALA-KDILNKSQEPFFVLNSD-IICDFP-FKDLVSFHKNHGKEGTIV-- 102
EPLG TAG + L + L + E VL +D + D +++ ++ +EG +V
Sbjct: 78 EPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVAL 137
Query: 103 -VTQVEEPSK----YGVVLYNEHG-------CIESFIEKP-----QEFVSNKI--NAGMY 143
+ P++ YG Y G E F+EKP E++ N G++
Sbjct: 138 GLR----PTRPETEYG---YIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVF 190
Query: 144 IFN------------PSVLDRIE-IKPTSIEKEIFP----------LMSKEKQLYAMELK 180
F PS + +E + + +E++ +M K +++ + +
Sbjct: 191 AFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGR 250
Query: 181 GFWMDVG 187
W DVG
Sbjct: 251 FPWDDVG 257
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 37.1 bits (86), Expect = 0.006
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 34/162 (20%)
Query: 202 SLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEG------------ 249
+ P I +DP A++ IG NV + P I
Sbjct: 54 NPEPSAPV-------IDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRS 106
Query: 250 ----GVCI-KRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL-GECIIGWKCV 303
GV + TI + + +E + +G V + + + + G +G
Sbjct: 107 NVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTF 166
Query: 304 VGQWVRMENITVL----GEDVIVQDELYVNGGQVLPHKSIGS 341
+G M V G + +++ G + + I +
Sbjct: 167 IG----M-QAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPA 203
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
...
Length = 293
Score = 36.3 bits (85), Expect = 0.012
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 105 QVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKP 157
V +P +YGVV +++ G S EKP E SN G+Y ++ V+D ++KP
Sbjct: 138 HVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKP 191
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
coli} SCOP: c.68.1.6
Length = 296
Score = 36.3 bits (85), Expect = 0.013
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 105 QVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKP 157
QV +P ++GVV ++++ S EKP++ SN G+Y ++ V++ ++KP
Sbjct: 139 QVMDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKP 192
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar,
LEFT-handed beta helix, sugar N-AC transferase; HET: COA
0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A*
3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Length = 205
Score = 35.4 bits (82), Expect = 0.018
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 206 KRPKLLKEGDGIVG-NVLVDPTA--------TIGPGCRIGPNVTIGPGVVIEGGVCIKRS 256
+ +L K G VG NVL+ A +IG RI + V I I
Sbjct: 23 SQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAY 82
Query: 257 TILRDAIVKSHSWLEGCIIGWKCVVGQWV 285
T L V + + I + +V +
Sbjct: 83 TALYGGEVGIEMY-DFANISSRTIVYAAI 110
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase,
structural genomics, riken S genomics/proteomics
initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii}
SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Length = 173
Score = 34.1 bits (79), Expect = 0.034
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 34/130 (26%)
Query: 196 MCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI-- 253
M +Y + K+P+ I + VD A + + ++ P V+ G +
Sbjct: 1 MAIY--EINGKKPR-------IHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIY 51
Query: 254 --KRS----------------TILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE 295
K S I + ++ + G +G ++G + + +L
Sbjct: 52 VGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIG----I-SSVILDG 106
Query: 296 CIIGWKCVVG 305
IG ++G
Sbjct: 107 AKIGDHVIIG 116
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold; HET: TYD; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.68.1.6
Length = 295
Score = 34.7 bits (81), Expect = 0.041
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 105 QVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI-EIKP 157
V +P +GVV ++ G + S EKP SN + G+Y ++ V++ I+P
Sbjct: 139 YVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEP 192
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project O structural and functional
analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Length = 232
Score = 33.6 bits (77), Expect = 0.060
Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 22/85 (25%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ +EAL AG+ V + + G L
Sbjct: 34 MVEWVLEALYAAGLSPVYVGENPGLVPAPALTLP------------------DRGGLLEN 75
Query: 61 AKDILNKSQEPFFVLNSDIICDFPF 85
+ L + V D P
Sbjct: 76 LEQALEHVEGRVLVAT----GDIPH 96
>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics,
protein structure initiative, medwest C structural
genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5
PDB: 3vnp_A 2eg0_A
Length = 173
Score = 32.2 bits (74), Expect = 0.14
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 227 ATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ + +VT+G V++ K + I +I+ L+G IG +G
Sbjct: 68 QSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSII-----LDGAEIGEGAFIG 118
Score = 27.6 bits (62), Expect = 4.8
Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 44/130 (33%)
Query: 202 SLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG------PGVVIEGGVCI-- 253
++K+PK I + + TI G +V +G VI G V
Sbjct: 7 PYKEKKPK-------IASSAFIADYVTI-----TG-DVYVGEESSIWFNTVIRGDVSPTI 53
Query: 254 --KRS----------------TILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGE 295
R + D V L C I ++G M +L
Sbjct: 54 IGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIG----M-GSIILDG 108
Query: 296 CIIGWKCVVG 305
IG +G
Sbjct: 109 AEIGEGAFIG 118
>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}
Length = 189
Score = 31.5 bits (72), Expect = 0.28
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 31/86 (36%)
Query: 223 VDPTATIGPG---CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ + PG IG +VTIG ++ H GC IG +
Sbjct: 75 ITHASDYNPGGYPLIIGDDVTIGHQAML-------------------H----GCTIGNRV 111
Query: 280 VVGQWVRMENITVLGECIIGWKCVVG 305
++G M ++ I+ + +V
Sbjct: 112 LIG----M-KSMIMDGAIVEDEVIVA 132
Score = 28.0 bits (63), Expect = 4.1
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 190 RDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG------P 243
D + + + + PKL + V VD ++ I IG +V +G P
Sbjct: 2 SDQSGKLLTSVRTYQGISPKLGE-------RVFVDRSSVI-----IG-DVELGDDCSVWP 48
Query: 244 GVVIEGGVCI----KRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIG 299
VI G + R+++ +++ + G+ ++G V + + +L C IG
Sbjct: 49 LAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIG 108
Query: 300 WKCVVGQWVRMENITVLGEDVIV 322
+ ++G + + ++ ++VIV
Sbjct: 109 NRVLIGMKSMIMDGAIVEDEVIV 131
Score = 27.2 bits (61), Expect = 7.6
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 21/61 (34%)
Query: 228 TIGP-----GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
TIG GC IG V IG S I+ AIV+ + I+ V
Sbjct: 95 TIGHQAMLHGCTIGNRVLIGMK-----------SMIMDGAIVE-----DEVIVAAGATVS 138
Query: 283 Q 283
Sbjct: 139 P 139
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase;
HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A*
2x60_A* 2x5s_A*
Length = 336
Score = 31.7 bits (73), Expect = 0.34
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 33/98 (33%)
Query: 123 IESFIEKP-----QEFVSNKI---NAGMYIFNPSV---------------LDRIEIKPTS 159
+ F EKP ++FV + N+GM+++ L ++ +
Sbjct: 165 VAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFE 224
Query: 160 IEKEIFP----------LMSKEKQLYAMELKGFWMDVG 187
K+ + +M K K++ ++ W D+G
Sbjct: 225 ELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLG 262
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); 2.70A {Staphylococcus aureus}
Length = 219
Score = 31.5 bits (71), Expect = 0.35
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
IG IG +VTI PGV I G I
Sbjct: 120 EIGNDVWIGRDVTIMPGVKIGDGAII 145
Score = 29.9 bits (67), Expect = 1.1
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGG---VCIKRSTI----------LRD 261
+ ++ IG IG +IGPG + ST
Sbjct: 48 GESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYM 107
Query: 262 AIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+K IG +G+ ++T++ IG ++
Sbjct: 108 PSLKDLPLKGDIEIGNDVWIGR-----DVTIMPGVKIGDGAIIA 146
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 31.0 bits (70), Expect = 0.40
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
IG IG I PGV I G I
Sbjct: 113 IIGHDVWIGTEAMIMPGVKIGHGAII 138
Score = 29.5 bits (66), Expect = 1.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGG 250
IG I P V IG G +I
Sbjct: 120 IGTEAMIMPGVKIGHGAIIASR 141
Score = 28.0 bits (62), Expect = 4.0
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 8/94 (8%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGG-------VCIKRSTILRDAIVKSHSWLEG 272
+ P IG +IG G V I +G
Sbjct: 46 VRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDG 105
Query: 273 CIIGWKCVVGQWVRM-ENITVLGECIIGWKCVVG 305
++G V + ++ IG ++
Sbjct: 106 FTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIA 139
Score = 28.0 bits (62), Expect = 4.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 205 QKRPKLLKEGDGIVGN-VLVDPTATIGPGCRIGPNVTIGPGVVIEGGV 251
R + GD I+G+ V + A I PG +IG I V+ V
Sbjct: 101 DARDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDV 148
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle
structural genomics center for infect disease,
GRAM-negative bacteria; 1.61A {Anaplasma
phagocytophilum}
Length = 191
Score = 31.1 bits (71), Expect = 0.41
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 28/76 (36%)
Query: 230 GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289
IG VTIG ++ H C +G VG M
Sbjct: 93 HGDTVIGKFVTIGHSCIL-------------------H----ACTLGNNAFVG----M-G 124
Query: 290 ITVLGECIIGWKCVVG 305
V+ ++ ++
Sbjct: 125 SIVMDRAVMEEGSMLA 140
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 31.1 bits (70), Expect = 0.50
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
IG IG PGV + G I
Sbjct: 112 LIGHEVWIGTEAMFMPGVRVGHGAII 137
Score = 27.6 bits (61), Expect = 6.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 214 GDGIVGN-VLVDPTATIGPGCRIGPNVTIGPGVVI 247
GD ++G+ V + A PG R+G IG ++
Sbjct: 109 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALV 143
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix
domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB:
1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Length = 209
Score = 31.0 bits (70), Expect = 0.52
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
IG IG +V I PGV I G +
Sbjct: 115 IIGNDVWIGKDVVIMPGVKIGDGAIV 140
Score = 29.1 bits (65), Expect = 2.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGG 250
IG I P V IG G ++
Sbjct: 122 IGKDVVIMPGVKIGDGAIVAAN 143
Score = 28.7 bits (64), Expect = 2.7
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 16/68 (23%)
Query: 214 GDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGC 273
G+G ++ I IG +V IG VVI GV I +G
Sbjct: 95 GNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIG----------------DGA 138
Query: 274 IIGWKCVV 281
I+ VV
Sbjct: 139 IVAANSVV 146
Score = 28.3 bits (63), Expect = 3.8
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 18/104 (17%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI---EGGVCIKRSTI----------LRD 261
++ + +IG +IGPGV I + ST
Sbjct: 43 GETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHM 102
Query: 262 AIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+ IIG +G+ ++ ++ IG +V
Sbjct: 103 PKLDQLPIKGDTIIGNDVWIGK-----DVVIMPGVKIGDGAIVA 141
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
{Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 30.5 bits (70), Expect = 0.54
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
TIG IG I PGV I
Sbjct: 130 TIGNNVWIGGRAVINPGVTI 149
Score = 29.0 bits (66), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 227 ATIGPGCRIGPNVTIGPGVVI 247
A I PG IG NV + G V+
Sbjct: 141 AVINPGVTIGDNVVVASGAVV 161
Score = 28.6 bits (65), Expect = 2.1
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 22/66 (33%)
Query: 204 RQKRPKLLKEGDGIVGNVLVDP--------TATIGPGC--------------RIGPNVTI 241
R ++L + G V ++P +G RIG N +
Sbjct: 42 HTLRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML 101
Query: 242 GPGVVI 247
PGV I
Sbjct: 102 APGVHI 107
Score = 27.9 bits (63), Expect = 3.9
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
IG NV IG VI GV I +
Sbjct: 130 TIGNNVWIGGRAVINPGVTIGDNVVV 155
Score = 27.5 bits (62), Expect = 6.4
Identities = 17/79 (21%), Positives = 18/79 (22%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
IG C + P V TIG V I G I
Sbjct: 94 RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVI---------- 143
Query: 264 VKSHSWLEGCIIGWKCVVG 282
G IG VV
Sbjct: 144 ------NPGVTIGDNVVVA 156
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
biovar eltor} PDB: 3ect_A*
Length = 195
Score = 30.6 bits (70), Expect = 0.55
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
I IG NV I GV I
Sbjct: 134 VIEDDVWIGGNVVINQGVTI 153
Score = 28.6 bits (65), Expect = 2.7
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
I G IG + VV
Sbjct: 145 VVINQGVTIGARSVVAANSVV 165
Score = 27.9 bits (63), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
I +V IG VVI GV I RS +
Sbjct: 134 VIEDDVWIGGNVVINQGVTIGARSVV 159
Score = 27.5 bits (62), Expect = 6.1
Identities = 17/79 (21%), Positives = 20/79 (25%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
TIG IGP+ I V I G V I
Sbjct: 98 TIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVI---------- 147
Query: 264 VKSHSWLEGCIIGWKCVVG 282
+G IG + VV
Sbjct: 148 ------NQGVTIGARSVVA 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.58
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 128 EKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIE 161
EK Q K+ A + ++ + IK T +E
Sbjct: 18 EK-QAL--KKLQASLKLYADDSAPALAIKAT-ME 47
>3srt_A Maltose O-acetyltransferase; structural genomics, the center
structural genomics of infectious diseases, csgid; 2.50A
{Clostridium difficile}
Length = 188
Score = 30.6 bits (70), Expect = 0.59
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
IG IG V I PG+ I
Sbjct: 134 KIGDNVWIGGGVIITPGITI 153
Score = 29.0 bits (66), Expect = 1.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 227 ATIGPGCRIGPNVTIGPGVVI 247
I PG IG NV IG G V+
Sbjct: 145 VIITPGITIGDNVVIGAGSVV 165
Score = 27.9 bits (63), Expect = 3.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
+IG NV IG GV+I G+ I I
Sbjct: 134 KIGDNVWIGGGVIITPGITIGDNVVI 159
Score = 27.5 bits (62), Expect = 5.9
Identities = 18/79 (22%), Positives = 20/79 (25%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
IG + PNV IG V I GGV I
Sbjct: 98 EIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVII---------- 147
Query: 264 VKSHSWLEGCIIGWKCVVG 282
G IG V+G
Sbjct: 148 ------TPGITIGDNVVIG 160
>3ftt_A Putative acetyltransferase sacol2570; galactoside
O-acetyltransferase, enzyme, structural genomics,
acyltransferase; 1.60A {Staphylococcus aureus subsp}
PDB: 3v4e_A*
Length = 199
Score = 30.6 bits (70), Expect = 0.63
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
IG G +V + PGV I
Sbjct: 132 HIGSNTWFGGHVAVLPGVTI 151
Score = 29.0 bits (66), Expect = 2.0
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
+ PG IG IG G VV
Sbjct: 143 VAVLPGVTIGEGSVIGAGSVV 163
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
IG N G V + GV I + S I
Sbjct: 132 HIGSNTWFGGHVAVLPGVTIGEGSVI 157
Score = 27.5 bits (62), Expect = 6.4
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 228 TIGPGCRIGPNVTI 241
TIG IGPN
Sbjct: 96 TIGDNVFIGPNCGF 109
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 30.6 bits (70), Expect = 0.64
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
TIG IG +V I PGV I
Sbjct: 133 TIGNNVWIGSHVVINPGVTI 152
Score = 28.7 bits (65), Expect = 2.3
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
I PG IG N IG G +V
Sbjct: 144 VVINPGVTIGDNSVIGAGSIV 164
Score = 27.9 bits (63), Expect = 4.3
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
IG NV IG VVI GV I S I
Sbjct: 133 TIGNNVWIGSHVVINPGVTIGDNSVI 158
Score = 27.1 bits (61), Expect = 7.0
Identities = 19/79 (24%), Positives = 20/79 (25%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
TIG I PNV TIG V I V I
Sbjct: 97 TIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVI---------- 146
Query: 264 VKSHSWLEGCIIGWKCVVG 282
G IG V+G
Sbjct: 147 ------NPGVTIGDNSVIG 159
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix,
acyltransferase, struct genomics; 2.15A {Bacillus
anthracis} PDB: 3igj_A*
Length = 190
Score = 30.5 bits (70), Expect = 0.64
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
IG +G I PGV I
Sbjct: 136 KIGNNVWVGGGAIINPGVSI 155
Score = 28.2 bits (64), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
A I PG IG N I G VV
Sbjct: 147 AIINPGVSIGDNAVIASGAVV 167
Score = 27.8 bits (63), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
+IG NV +G G +I GV I + I
Sbjct: 136 KIGNNVWVGGGAIINPGVSIGDNAVI 161
Score = 27.1 bits (61), Expect = 8.1
Identities = 15/79 (18%), Positives = 17/79 (21%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
IG C P V IG V + GG I
Sbjct: 100 RIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAII---------- 149
Query: 264 VKSHSWLEGCIIGWKCVVG 282
G IG V+
Sbjct: 150 ------NPGVSIGDNAVIA 162
>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H
domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium
tuberculosis} PDB: 3fsx_A*
Length = 332
Score = 30.8 bits (69), Expect = 0.68
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 228 TIGPGCRIGPN----VTIGPGVVIEGGVCIKRSTILRDA 262
+IG C +G N +++G V+E G+ + T +
Sbjct: 235 SIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTRVTMP 273
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus
kaustophilus structural genomics, PSI; 1.74A
{Geobacillus kaustophilus} PDB: 2ic7_A
Length = 185
Score = 30.2 bits (69), Expect = 0.77
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 228 TIGPGCRIGPNVTIGPGVVI 247
IG IG I PGV I
Sbjct: 132 VIGHNVWIGGRAVINPGVTI 151
Score = 28.2 bits (64), Expect = 3.6
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
A I PG IG N I G VV
Sbjct: 143 AVINPGVTIGDNAVIASGAVV 163
Score = 27.5 bits (62), Expect = 5.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCI-KRSTI 258
IG NV IG VI GV I + I
Sbjct: 132 VIGHNVWIGGRAVINPGVTIGDNAVI 157
Score = 27.1 bits (61), Expect = 7.2
Identities = 17/79 (21%), Positives = 18/79 (22%), Gaps = 40/79 (50%)
Query: 228 TIGPGCRIGPNV------------------------TIGPGVVIEGGVCIKRSTILRDAI 263
IG C IGP V IG V I G I
Sbjct: 96 RIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVI---------- 145
Query: 264 VKSHSWLEGCIIGWKCVVG 282
G IG V+
Sbjct: 146 ------NPGVTIGDNAVIA 158
>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate
succinyltransferase; structural genomics, joint center
for structural genomics; HET: MSE CIT; 1.90A
{Campylobacter jejuni}
Length = 387
Score = 30.4 bits (68), Expect = 0.87
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 228 TIGPGCRIGPN----VTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVV 281
++G C +G N + +G +++ G+ + T + + L K +
Sbjct: 292 SVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEELAKLNPYFNFDKEIY 349
Score = 28.9 bits (64), Expect = 2.7
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGV-VIEGGVCIKRSTILRDAIVKSHSWL-EGCIIGW 277
N + ++ + G + TI PG + + ++ + + S + + EG +G
Sbjct: 217 NTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMV-EGRISSSAIVGEGSDVGG 275
Query: 278 KCVVGQWVR--MENITVLGE-CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
+ + N +G+ C++G V G LG++ IV + V G
Sbjct: 276 GASILGVLSGTSGNAISVGKACLLGANSVTG--------IPLGDNCIVDAGIAVLEG 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.3
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 23/126 (18%)
Query: 59 ALAKDILNKSQEPF-----FVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYG 113
A+D+ N++ F F + DI+ + P + F GK ++ E Y
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGK-------RIRE--NYS 1689
Query: 114 VVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPS--VLDRIEI-KP--TSIEKEIFPLM 168
+++ ++ ++ + F ++ Y F +L + +P T +EK F +
Sbjct: 1690 AMIF--ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 169 SKEKQL 174
K K L
Sbjct: 1748 -KSKGL 1752
Score = 28.1 bits (62), Expect = 7.2
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 18/61 (29%)
Query: 194 KGMC--LYLNSLRQKRPKLLKEGDG---------IVGNVLVDPTA-TI---GP-GCRIGP 237
+GM LY S + + D I+ V+ +P TI G G RI
Sbjct: 1629 QGMGMDLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 238 N 238
N
Sbjct: 1687 N 1687
>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center
for structural genomics O infectious diseases, all beta
protein; 1.20A {Salmonella enterica subsp}
Length = 187
Score = 29.5 bits (67), Expect = 1.3
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 28/76 (36%)
Query: 230 GPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMEN 289
G IG +VT+G V++ H GC IG + +VG M
Sbjct: 81 GNPLIIGEDVTVGHKVML-------------------H----GCTIGNRVLVG----M-G 112
Query: 290 ITVLGECIIGWKCVVG 305
VL II ++G
Sbjct: 113 SIVLDGAIIEDDVMIG 128
Score = 27.2 bits (61), Expect = 6.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 16/52 (30%)
Query: 232 GCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
GC IG V +G G S +L AI++ + +IG +V Q
Sbjct: 100 GCTIGNRVLVGMG-----------SIVLDGAIIE-----DDVMIGAGSLVPQ 135
Score = 27.2 bits (61), Expect = 7.1
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 196 MCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIG------PGVVIEG 249
M L + P I V++D ++ + IG +V + P VVI G
Sbjct: 4 MSDTLRPYKNLFPG-------IGQRVMIDTSSVV-----IG-DVRLADDVGIWPLVVIRG 50
Query: 250 GVCI----KRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
V R+ I +++ G ++G+ V + + +L C IG + +VG
Sbjct: 51 DVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVG 110
Query: 306 QWVRMENITVLGEDVIV 322
+ + ++ +DV++
Sbjct: 111 MGSIVLDGAIIEDDVMI 127
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 29.8 bits (67), Expect = 1.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
I +G NV+I GV + G I
Sbjct: 165 IISSYVWVGRNVSIMKGVSVGSGSVI 190
Score = 27.5 bits (61), Expect = 7.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 227 ATIGPGCRIGPNVTIGPG-VV 246
+I G +G IG G +V
Sbjct: 176 VSIMKGVSVGSGSVIGYGSIV 196
>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas
aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A
Length = 347
Score = 29.7 bits (66), Expect = 1.5
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 228 TIGPGCRIGPN----VTIGPGVVIEGGVCIKRSTILRDA 262
++G GC IG N + +G ++E G+ I T +
Sbjct: 258 SVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKVALL 296
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL;
HET: SOP; 1.90A {Neisseria meningitidis serogroup Y}
PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Length = 215
Score = 29.4 bits (66), Expect = 1.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 229 IGPGCRIGPNVTIGPGVVI 247
+G I V I VV+
Sbjct: 146 LGRNVTILKGVCIPNNVVV 164
Score = 29.4 bits (66), Expect = 1.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 ATIGPGCRIGPNVTIGPGVVI 247
TI G I NV +G V+
Sbjct: 150 VTILKGVCIPNNVVVGSHTVL 170
Score = 29.0 bits (65), Expect = 1.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCI 253
IG +G NVTI GV I V +
Sbjct: 139 IIGNHVWLGRNVTILKGVCIPNNVVV 164
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 29.3 bits (65), Expect = 2.5
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 119 EHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAME 178
GC I P + + + ++ P + + P + +
Sbjct: 48 MRGCAADDIMDPTSLAETQED--------HNGGQKQLSPQKVTLYLRPGQAAAFNVTFRR 99
Query: 179 LKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKE 213
KG+ +D+ D M L ++++ LL+
Sbjct: 100 AKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRA 134
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 28.8 bits (64), Expect = 3.5
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 220 NVLVDP---TATIGPGCRIGP---NVTIGPGVVIEGGVC 252
+ DP I PG + + +G V I GGVC
Sbjct: 113 EIAYDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPGGVC 151
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 28.7 bits (64), Expect = 3.6
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 220 NVLVDP---TATIGPGCRIGP---NVTIGPGVVIEGGVC 252
V D + PG +G + + GV I GVC
Sbjct: 111 QVFYDSGKRAFAVEPGATLGETYRALYLDWGVTIPAGVC 149
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding,
complex of two elongation factors; 3.00A {Thermus
thermophilus} SCOP: a.5.2.2 d.43.1.1
Length = 196
Score = 28.1 bits (63), Expect = 4.0
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 97 KEGTIVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYI--FNPSVLDRIE 154
+EG I+ + + GV++ E C F+ + + F + + M+I NP + E
Sbjct: 56 REG-IIGHYIHHNQRVGVLV--ELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEE 112
Query: 155 IKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEG 214
I +EKE + + + G+ + +L+ + L L Q +K+
Sbjct: 113 IPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVL----LEQ---PFVKDD 165
Query: 215 DGIVGNVLVDPTATIGPGCRI 235
V ++ A IG +
Sbjct: 166 KVKVKELIQQAIAKIGENIVV 186
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics,
PSI, protein structure INIT midwest center for
structural genomics, MCSG; HET: MES; 2.50A {Bacillus
cereus}
Length = 323
Score = 28.2 bits (63), Expect = 4.4
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 2 LLHQIEALVEAGVREVILAVSYRAEQMEDEL 32
L+ ++ GV + LA+ ++ L
Sbjct: 279 LIELLDIYKSIGVNHLFLALFDGQRPADEVL 309
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 28.2 bits (63), Expect = 4.6
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 25/95 (26%)
Query: 225 PTATIGPG--------------CRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL 270
P A+I IG I V + G + + + K H
Sbjct: 168 PGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTL-GAMHFQEEGGVIKRGTKRHP-- 224
Query: 271 EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVG 305
+G +G VLG I+G +G
Sbjct: 225 ---TVGDYVTIGT-----GAKVLGNIIVGSHVRIG 251
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 28.1 bits (63), Expect = 4.9
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 221 VLVDP---TATIGPGCRIGP---NVTIGPGVVIEGGVC 252
+ + A + PG R+G + G I G C
Sbjct: 95 ISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTC 132
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD;
1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Length = 459
Score = 28.2 bits (63), Expect = 5.0
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 215 DGIV------GNVLVDP---TATIGPGCRIGP--NVTIGPGVVIEGGVC 252
GIV ++ +D A IG G G G+ G+
Sbjct: 82 GGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMH 130
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 27.8 bits (62), Expect = 6.2
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 220 NVLVDP--TATIGPGCRIGP---NVTIGPGVVIEGGVC 252
V VD ATI G R+G + + G C
Sbjct: 99 RVSVDDNNVATIQGGARLGYTALELLDQGNRALSHGTC 136
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 27.9 bits (62), Expect = 6.4
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 6/39 (15%)
Query: 220 NVLVDP---TATIGPGCRIGP-NVTIGP--GVVIEGGVC 252
+ +G G + + + G C
Sbjct: 90 AIGPAADGAGVRVGSGATVDQVQKALFRRWNAALPLGAC 128
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 28.0 bits (62), Expect = 6.7
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 220 NVLVDP---TATIGPGCRIGP---NVTIGPGVVIEGGVC 252
V D + G +G + GV + GG C
Sbjct: 114 AVGFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPGGAC 152
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 27.4 bits (61), Expect = 9.1
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 229 IGPGCRIGPNVTI--GPGVVI 247
I PG +IG + TI G GVVI
Sbjct: 193 IHPGAQIGHHFTIDHGTGVVI 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.422
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,972,810
Number of extensions: 380382
Number of successful extensions: 1400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 206
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)