RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9164
(380 letters)
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 146 bits (370), Expect = 6e-42
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 10/202 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE+++ + + L + + GI L ++ + P G A +
Sbjct: 34 MIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFII 93
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ LN VL +I F + + T+ QV +P ++GVV ++++
Sbjct: 94 GETFLNGE-PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN 152
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKE-----IFPLMSKEKQL 174
S EKP++ SN G+Y ++ V++ + +KP S E I + + L
Sbjct: 153 FRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKP-SERGELEITSINQMYLEAGNL 211
Query: 175 --YAMELKGFWMDVGQPRDFLK 194
+ W+D G ++
Sbjct: 212 TVELLGRGFAWLDTGTHDSLIE 233
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 144 bits (366), Expect = 3e-41
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 10/202 (4%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+RE+++ + + +L + G+ L ++ + P G A +
Sbjct: 34 MIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLI 93
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ + VL ++ F +L+ ++ V +P +YGVV +++
Sbjct: 94 GESFIGN-DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG 152
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIE-IKPTSIEKEIF-----PLMSKEKQL 174
G S EKP E SN G+Y ++ V+D +KP S E+ + QL
Sbjct: 153 GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKP-SPRGELEITDVNRAYLERGQL 211
Query: 175 YA--MELKGFWMDVGQPRDFLK 194
M W+D G L+
Sbjct: 212 SVEIMGRGYAWLDTGTHDSLLE 233
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 124 bits (313), Expect = 1e-33
Identities = 42/201 (20%), Positives = 85/201 (42%), Gaps = 8/201 (3%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
M+ + + L+ AG+R++++ + R + +L + + G+ + + EP G A +
Sbjct: 36 MIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIV 95
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
KD + S + VL ++ F +++ + I V +P +GVV ++
Sbjct: 96 GKDFIGDS-KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE 154
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFP-------LMSKEKQ 173
G + S EKP SN + G+Y ++ V++ S E+ L + +
Sbjct: 155 GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLR 214
Query: 174 LYAMELKGFWMDVGQPRDFLK 194
+ M W+D G L+
Sbjct: 215 VELMGRGMAWLDTGTHDGLLE 235
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase
small subunit, catalytic domain {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 307
Score = 94.3 bits (233), Expect = 2e-22
Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 42/236 (17%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVF-------------SH 47
++ + + + + ++ + + + + L+ +
Sbjct: 45 LIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEN 104
Query: 48 ENEPLGTAGPLALAKDIL-NKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQV 106
+ GTA + + + + +L D + ++ + H+ + T+ +
Sbjct: 105 PDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164
Query: 107 EE--PSKYGVVLYNEHGCIESFIEKPQ---------------------EFVSNKINAGMY 143
+E + +G++ +E G I F EKPQ + + + G+Y
Sbjct: 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIY 224
Query: 144 IFNPSVLDRIE----IKPTSIEKEIFP-LMSKEKQLYAMELKGFWMDVGQPRDFLK 194
+ + V+ + E+ P S ++ A G+W D+G F
Sbjct: 225 VISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYN 280
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 80.5 bits (197), Expect = 6e-18
Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 30/226 (13%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL--------------------TVETKKLG 40
+L H ++ G+++ I+ Y+ +++ +
Sbjct: 35 ILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEP 94
Query: 41 ISLVFSHENEPLGTAGPLALAKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGT 100
++ + T G L + K E F D + D K + FHK HGK+ T
Sbjct: 95 WNVTLVDTGDSSMTGGRLKRVAEY-VKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153
Query: 101 IVVTQVEEPSKYGVVLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSVLDRIEIKPTSI 160
+ T P ++G + + + IN G ++ NPSV+D I+ T+
Sbjct: 154 L--TATFPPGRFGALDIQAGQVRSFQEKPKGDG--AMINGGFFVLNPSVIDLIDNDATTW 209
Query: 161 EKEIFPLMSKEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLRQK 206
E+E ++++ +L A E GFW + RD +YL L +K
Sbjct: 210 EQEPLMTLAQQGELMAFEHPGFWQPMDTLRDK-----VYLEGLWEK 250
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 68.0 bits (165), Expect = 1e-13
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 10/160 (6%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHS---WLEGC 273
I + V PTA + G IG N IGP ++ V I T+L+ +V + +
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61
Query: 274 IIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMEN-------ITVLGEDVIVQDEL 326
I + + ++ IG + + + V + +T +G D ++
Sbjct: 62 IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINA 121
Query: 327 YVNGGQVLPHKSIGSSLHMLGEDVIVQDELYVNGGQVLPH 366
++ + ++ I ++ L V V D + G +
Sbjct: 122 HIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQ 161
>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 78
Score = 61.4 bits (149), Expect = 6e-13
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
+ G + I I NVT+G V I G IK S I D + ++ +E +
Sbjct: 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70
Query: 277 WKCVVG 282
C +G
Sbjct: 71 AACTIG 76
Score = 28.6 bits (64), Expect = 0.25
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 266 SHSWLEG-CIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324
+ L G G + V +E G +G + +G ++N +V+G+D +
Sbjct: 7 ARFDLRGTLTHGRDVEIDTNVIIE-----GNVTLGHRVKIGTGCVIKN-SVIGDDCEISP 60
Query: 325 ELYVNGGQVLPHKSIG 340
V + +IG
Sbjct: 61 YTVVEDANLAAACTIG 76
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
enterica [TaxId: 28901]}
Length = 320
Score = 56.8 bits (136), Expect = 1e-09
Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 12/148 (8%)
Query: 210 LLKEGDGIV--GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSH 267
L ++GD + N + I RI T+ V I V I R+ I A + +
Sbjct: 51 LSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDN 110
Query: 268 SWL-EGCIIGWKCVVGQWVRMENITVLGECIIG---------WKCVVGQWVRMENITVLG 317
+ + + G + +L + + R+ + L
Sbjct: 111 VTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLY 170
Query: 318 EDVIVQDELYVNGGQVLPHKSIGSSLHM 345
+ + + +V I
Sbjct: 171 GNATITHAFIEHRAEVFDFALIEGDKDN 198
Score = 32.1 bits (72), Expect = 0.10
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 219 GNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI 253
G +L+D I I + I V I G +
Sbjct: 259 GPILLDDRVLIEGHACIQGEILIERQVEISGRAAV 293
Score = 31.0 bits (69), Expect = 0.22
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 216 GIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI 253
+ VL++ A I I V I +
Sbjct: 262 LLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDN 299
Score = 29.0 bits (64), Expect = 0.81
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 183 WMDVGQPRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPN---- 238
+ + + E I GN ++ +G +
Sbjct: 204 DCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILL 263
Query: 239 ---VTIGPGVVIEGGVCIKRS-TILRDAIVKSHSWLEGCIIGWKCVVGQ 283
V I I+G + I+R I A V + + G K + G+
Sbjct: 264 DDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNTIHLRGPKVINGE 312
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
{Helicobacter pylori [TaxId: 210]}
Length = 259
Score = 55.8 bits (133), Expect = 2e-09
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVG 282
+ TA I P I V IG VI GV + L + + VG
Sbjct: 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHN----------NVTLQGHTFVG 52
Query: 283 QWVRMENITVLGE-CIIGWKCVVGQWVRMENITVLGE 318
+ + VLG + + ++ E
Sbjct: 53 KNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIRE 89
Score = 55.8 bits (133), Expect = 2e-09
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDA--IVKSHSWLEGCIIGW 277
++ P A I G IG IG GV ++ GV + + L+ + K+ ++G
Sbjct: 6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT 65
Query: 278 KCVVGQWVRMENITVLG 294
+ ++ + ++G
Sbjct: 66 QPQDLKYKGEYSELIIG 82
>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 173
Score = 49.6 bits (117), Expect = 8e-08
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 4/129 (3%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ P+A + + +V + + ++ S+ +
Sbjct: 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQ---DNVSIHT 66
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ-VLPHKS 338
G + +G + VG +V + +V+ + + D + + G V P+K
Sbjct: 67 SHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKE 126
Query: 339 IGSSLHMLG 347
I +LG
Sbjct: 127 IPDYSLVLG 135
>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 210
Score = 48.5 bits (114), Expect = 3e-07
Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 10/160 (6%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGG----VCIKRSTILRDAIVKSHSWLEGCII 275
+DP A++ IG NV + P I + + + ++D +V I
Sbjct: 28 TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHA----LETI 83
Query: 276 GWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLP 335
+ + +E IG + ++ +G+D + + +V +V
Sbjct: 84 NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 143
Query: 336 HKSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPE 375
+ + +G V + D Y+ G V+ ++ +PE
Sbjct: 144 NCVLEPRSAAIG--VTIPDGRYIPAGMVVTSQAEADKLPE 181
Score = 39.6 bits (91), Expect = 2e-04
Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 5/143 (3%)
Query: 234 RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVRMENITVL 293
I P I P + G V I + ++ +G + V V + + +
Sbjct: 24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETI 83
Query: 294 GECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLHMLGEDV--- 350
E + + + E +G +V + + V+G + + + +
Sbjct: 84 NEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 143
Query: 351 --IVQDELYVNGGQVLPHKSIGS 371
+++ G + + I +
Sbjct: 144 NCVLEPRSAAIGVTIPDGRYIPA 166
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 217 IVGNVLVDPTATIGPGCRI----GPNVTIGPGVVIEGGVCIKRSTILR-DAIVKSHSWLE 271
++G V + + P I G + +G ++ GV + + + + +E
Sbjct: 37 VIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVE 96
Query: 272 GCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
+ +G V + + + + + +G + +++ G
Sbjct: 97 VDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGV 156
Query: 332 QVLPHKSIGSSLHMLG 347
+ + I + + +
Sbjct: 157 TIPDGRYIPAGMVVTS 172
>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 201
Score = 47.3 bits (111), Expect = 6e-07
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 1/144 (0%)
Query: 222 LVDPTAT-IGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCV 280
L DP + G +V I V+IEG V + + V +S +
Sbjct: 3 LRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYT 62
Query: 281 VGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIG 340
V + + +G V + + L IG
Sbjct: 63 VVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 122
Query: 341 SSLHMLGEDVIVQDELYVNGGQVL 364
++++ + + ++
Sbjct: 123 DNVNIGAGTITCNYDGANKFKTII 146
Score = 45.4 bits (106), Expect = 2e-06
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 1/158 (0%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
+ G + I I NVT+G V I G IK S I D + ++ +E +
Sbjct: 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70
Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH 336
C +G + R+ L E V + R+ + G + D + +
Sbjct: 71 AACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAG 130
Query: 337 KSIGSSLHMLGEDVIVQDELYVN-GGQVLPHKSIGSSV 373
+ I+ D+++V Q++ ++G
Sbjct: 131 TITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGA 168
Score = 44.6 bits (104), Expect = 5e-06
Identities = 14/113 (12%), Positives = 31/113 (27%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ T T G I NV I V + V I +++++++ + +
Sbjct: 8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQ 332
+ + L + LG+ Y+ +
Sbjct: 68 NLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAE 120
Score = 31.1 bits (69), Expect = 0.13
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGV 251
I +V V + +G TI G + V
Sbjct: 146 IGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV 180
Score = 29.2 bits (64), Expect = 0.56
Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 5/164 (3%)
Query: 217 IVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
I GNV + IG GC I +V + V + I G +
Sbjct: 29 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 88
Query: 277 WKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPH 336
VG +V M+ + G +G +N+ + + + ++
Sbjct: 89 EGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGD 148
Query: 337 KSIGSSLHMLGEDVIVQDELYVNGGQVLPHKSIGSSVPEPQIIM 380
S L V V + G + +V E + +
Sbjct: 149 DVFVGSDTQLVAPVTVGKGATIAAGTT-----VTRNVGENALAI 187
>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 196
Score = 45.8 bits (107), Expect = 2e-06
Identities = 17/160 (10%), Positives = 47/160 (29%), Gaps = 6/160 (3%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+D I +I NVT+ I + T + D+ + + + + +I
Sbjct: 8 ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESS 67
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSI 339
V + + +G + +G +V ++ ++ N
Sbjct: 68 VADGVIVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFG 127
Query: 340 GSSLHMLGEDVIVQDELYVNGGQ------VLPHKSIGSSV 373
++ + + + N ++ +G +
Sbjct: 128 AGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNS 167
Score = 28.9 bits (63), Expect = 0.76
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 212 KEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI 247
K I NV V +TI +G N +G G I
Sbjct: 140 KYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTI 175
Score = 26.6 bits (57), Expect = 4.9
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRS 256
++ +G I V +G ++ G I +
Sbjct: 144 VIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD 178
>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase,
THDP-succinlytransferase, DapD {Mycobacterium bovis
[TaxId: 1765]}
Length = 274
Score = 42.6 bits (100), Expect = 4e-05
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 215 DGIVG-NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWL--- 270
V +VD AT+G +IG NV + GV I G + I++ + ++
Sbjct: 131 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL---EPLQANPTIIEDNCFIGAR 187
Query: 271 ----EGCIIGWKCVVG 282
EG I+ V+
Sbjct: 188 SEVVEGVIVEEGSVIS 203
Score = 37.2 bits (86), Expect = 0.002
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 224 DPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLE-GCIIGWKCVVG 282
D G R+ P T+ G I + S + A V + ++ +G +G
Sbjct: 94 DEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIG 153
Query: 283 QWVRM-ENITVLGE--------CIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGG 331
+ V + + + G II C +G + ++ E ++ +Y+
Sbjct: 154 KNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS 211
>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate
adenylyltransferase small subunit, C-terminal domain
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 135
Score = 40.5 bits (94), Expect = 5e-05
Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 7/139 (5%)
Query: 225 PTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQW 284
P + + + + IG G VI+ I S + + + + +E ++
Sbjct: 3 PPSKML-DADVT-DSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETD 59
Query: 285 VRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHKSIGSSLH 344
+ + +G+ ++ + I + +N V
Sbjct: 60 ADRKLLAA----KGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYF 115
Query: 345 MLGEDVIVQDELYVNGGQV 363
+ V V + + G +
Sbjct: 116 IKSGIVTVIKDALIPSGII 134
Score = 25.5 bits (55), Expect = 6.8
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 10/72 (13%)
Query: 217 IVGNVLVDPTATIGPGC-----RIGPNVTIGPGVVIEGGVCI-KRSTILRDAIVKSHSWL 270
+ IG C I N IG V I + + + +KS
Sbjct: 63 KLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-- 120
Query: 271 EGCIIGWKCVVG 282
+ ++
Sbjct: 121 --VTVIKDALIP 130
>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli
[TaxId: 562]}
Length = 182
Score = 41.3 bits (96), Expect = 5e-05
Identities = 27/155 (17%), Positives = 45/155 (29%), Gaps = 32/155 (20%)
Query: 190 RDFLKGMCLYLNSLR----QKRPKLLKEGDGIVGNVLVDPT--------------ATIGP 231
R + + N R ++L + G V ++PT
Sbjct: 24 RLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANF 83
Query: 232 GC--------RIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQ 283
C RIG N + PGV I + IG +G
Sbjct: 84 DCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVA----RNSGAELGKPVTIGNNVWIGG 139
Query: 284 WVRMENITVLGE-CIIGWKCVVGQWVRMENITVLG 317
+ +G+ ++ VV + V +N+ V G
Sbjct: 140 RAVINPGVTIGDNVVVASGAVVTKDV-PDNVVVGG 173
>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase
BC4754 {Bacillus cereus [TaxId: 1396]}
Length = 172
Score = 39.9 bits (92), Expect = 2e-04
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 4/124 (3%)
Query: 222 LVDPTATIGPGCRIGPNVTIGPGVVIEGGV----CIKRSTILRDAIVKSHSWLEGCIIGW 277
+ I I VTI V + + I+ ++
Sbjct: 8 YKEKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLH 67
Query: 278 KCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQDELYVNGGQVLPHK 337
+ + +++TV + I+ + + +L I + G V K
Sbjct: 68 QSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGK 127
Query: 338 SIGS 341
I
Sbjct: 128 KIPP 131
>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 208
Score = 39.3 bits (91), Expect = 3e-04
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 4/106 (3%)
Query: 220 NVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKC 279
+ P IG +IG G + +
Sbjct: 42 ARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQ---GHRAEWASTFPFHFMHEEPAFAG 98
Query: 280 VVGQWVRMENITVLGECIIGWKCVVGQWVRM-ENITVLGEDVIVQD 324
V + + + E IG + + VR+ + ++ D
Sbjct: 99 AVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD 144
Score = 28.5 bits (63), Expect = 0.98
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 13/117 (11%)
Query: 235 IGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIGWKCVVGQWVR-------- 286
PN+ +G G ++ ++ +IG C +G
Sbjct: 17 SNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQG 76
Query: 287 --MENITVLGECIIGWKCVVGQWVRMENI---TVLGEDVIVQDELYVNGGQVLPHKS 338
E + + + V T++G +V + E G + H +
Sbjct: 77 HRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGA 133
Score = 26.2 bits (57), Expect = 6.1
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 228 TIGPGCRIGPNVTIGPGVVIEGGVCIKRSTILRDAIVKSHSWLEGCIIG 276
IG V IG + GV + I+ + + I+G
Sbjct: 104 QPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVG 152
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 38.9 bits (89), Expect = 5e-04
Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 28/205 (13%)
Query: 1 MLLHQIEALVEAGVREVILAVSYRAEQMEDELTVETKKLGISLVFSHENEPLGTAGPLAL 60
++ +QIE L E G+ ++I+ V Y EQ + +
Sbjct: 36 LIEYQIEFLKEKGINDIIIIVGYLKEQFDY--------------LKEKYGVRLVFNDKYA 81
Query: 61 AKDILNKSQEPFFVLNSDIICDFPFKDLVSFHKNHGKEGTIVVTQVEEPSKYGVVLYNEH 120
+ L + + D + +N T E+ + ++Y +
Sbjct: 82 DYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCTNEWFLVYGDD 141
Query: 121 GCIESFIEKPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEIFPL--------MSK 170
++ I + +I +G+ ++ ++I I + E L K
Sbjct: 142 YKVQDIIVDSKA---GRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIK 198
Query: 171 EKQLYAMEL-KGFWMDVGQPRDFLK 194
E +Y EL ++ +D+ K
Sbjct: 199 ELDVYVEELEGNSIYEIDSVQDYRK 223
>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
faecium, VAT(D) [TaxId: 1352]}
Length = 203
Score = 37.9 bits (87), Expect = 9e-04
Identities = 12/124 (9%), Positives = 29/124 (23%), Gaps = 3/124 (2%)
Query: 208 PKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCI--KRSTILRDAIVK 265
P + +G + P +G I + +
Sbjct: 5 PMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIG 64
Query: 266 SHSWL-EGCIIGWKCVVGQWVRMENITVLGECIIGWKCVVGQWVRMENITVLGEDVIVQD 324
+ G I + L + ++ T++G DV +
Sbjct: 65 KFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGK 124
Query: 325 ELYV 328
++ +
Sbjct: 125 DVVI 128
Score = 36.7 bits (84), Expect = 0.002
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 21/142 (14%)
Query: 223 VDPTATIGPGCRIGPNVTIGPGVVIEGGVCIK--RSTILRDAIVKSHSWL-EGCIIGWKC 279
I P NV +G + + + I+ + + C IG
Sbjct: 14 NKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGV 73
Query: 280 VVGQW---VRMENITVLGECIIGW---------------KCVVGQWVRMENITVLGEDVI 321
+ RM+ T ++G V + V+ V
Sbjct: 74 TIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVK 133
Query: 322 VQDELYVNGGQVLPHKSIGSSL 343
+ D V V+ L
Sbjct: 134 IGDGAIVAANSVVVKDIAPYML 155
>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 34.8 bits (79), Expect = 0.008
Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 23/167 (13%)
Query: 168 MS-KEKQLYAMELKGFWMDVGQPRDFLKGMCLYLNSLR----QKRPKLLKEGDGIVGNVL 222
M E+ + + R K + N +KR L+KE
Sbjct: 2 MPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFA------ 55
Query: 223 VDPTATIGPGCRIGPNVTI--GPGVVIEGGVCIKRSTILRD---AIVKSHSWLEGCIIGW 277
T+G + P V G + I + + D + + + +
Sbjct: 56 -----TVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLS 110
Query: 278 KCVVGQWVRMENITVL--GECIIGWKCVVGQWVRMENITVLGEDVIV 322
+ + IG +G V + +G++ ++
Sbjct: 111 VTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVI 157
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 33.2 bits (75), Expect = 0.040
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 192 FLKGMCLYLNSLRQKRPKLLKEGDGIVG-NVLVDPTATIGPGCRIGPNVTIGPGVVI 247
+ + K + V V++ A I +G IG V+
Sbjct: 166 IENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVV 222
Score = 32.0 bits (72), Expect = 0.077
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 215 DGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVIEGGVCIKRS 256
+ + V IG G +I N+ +G I +
Sbjct: 184 ESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNP 225
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
{Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 30.8 bits (68), Expect = 0.23
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 122 CIESFIEKPQEFVSNKINAGMYIFNPSVLDRI--EIKPTSIEKEIFPLMSKEKQLYAMEL 179
+ E + + + A + + L+ + + SI+ + M K +++ +
Sbjct: 193 APATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGV---MEKAERVRVVLG 249
Query: 180 KGFWMDVG 187
+ W DVG
Sbjct: 250 RFPWDDVG 257
>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter
jejuni [TaxId: 197]}
Length = 193
Score = 28.7 bits (63), Expect = 0.92
Identities = 13/119 (10%), Positives = 38/119 (31%)
Query: 129 KPQEFVSNKINAGMYIFNPSVLDRIEIKPTSIEKEIFPLMSKEKQLYAMELKGFWMDVGQ 188
+ ++ + KI+ + + I P++I +E ++ + + K +
Sbjct: 57 EIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILN 116
Query: 189 PRDFLKGMCLYLNSLRQKRPKLLKEGDGIVGNVLVDPTATIGPGCRIGPNVTIGPGVVI 247
++ C+ I N + + + P + + +G G +
Sbjct: 117 TSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATL 175
Score = 27.6 bits (60), Expect = 2.3
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 229 IGPGCRIGPNVTIGPGVVIEGGVCIKRS 256
+G + PN+++ ++ GG + ++
Sbjct: 151 LGINSCVLPNLSLADDSILGGGATLVKN 178
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 27.3 bits (59), Expect = 3.3
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 5 QIEALVEAGVREVILAVSYRAEQMED 30
+I G+ +L+ E+
Sbjct: 315 RINEYAALGIDSFVLSGYPHLEEAYR 340
>d1ivza_ d.58.41.1 (A:) SEA domain from the hypothetical protein
homologous to mucin 16 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 132
Score = 26.2 bits (58), Expect = 4.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 312 NITVLGEDVIVQDELYVNGG 331
N T L + + ++V+ G
Sbjct: 109 NGTQLLNFTLDRKSVFVDSG 128
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 27.0 bits (58), Expect = 4.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 5 QIEALVEAGVREVILAVSYRAEQME 29
+IEAL E GV + + ++ +
Sbjct: 285 KIEALGEMGVTQYVAGSPIGPDKEK 309
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 26.8 bits (58), Expect = 5.2
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 13/46 (28%)
Query: 6 IEALVEAGVREVILAVSYRAEQ----MEDELTVET-KKLGISLVFS 46
++ GV+ ++ DE+ +E +LGI+L+ +
Sbjct: 349 VDRAKRIGVQFIV--------APSGSAADEVVIEACNELGITLIHT 386
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 25.0 bits (54), Expect = 6.7
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 91 FHKNHGKEGTIVVTQVEEPSKYGV-VLYNEHGCIESFIEKPQEFVSNKINAGMYIFNPSV 149
+ + +V+ V ++ G V E+ IE I + + I
Sbjct: 6 YQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRI--- 62
Query: 150 LDRIEIKPTSIEKE 163
+ ++KE
Sbjct: 63 GRNECVVVIRVDKE 76
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
{Penicillium minioluteum [TaxId: 28574]}
Length = 373
Score = 26.2 bits (57), Expect = 7.3
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 232 GCRIGPNVTIGPGVVIEG--GVCIKRSTILRDAIVKSHSW-LEGCIIGWKCVVGQWVRME 288
G I PN + + I S +GW V ++
Sbjct: 176 GPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTID 235
Query: 289 NITVLGECIIGWKCVVGQWVRMENI 313
+ V+ I + VV + +
Sbjct: 236 TLNVIHTRYIKSETVVPSAIIGASP 260
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.422
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,464,327
Number of extensions: 72605
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 60
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)