BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9165
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 346 bits (887), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 174/307 (56%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 346 bits (887), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 174/307 (56%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 346 bits (887), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 174/307 (56%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 204/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 204/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 204/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 345 bits (884), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 205/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRL+SQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 203/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPR HFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 203/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPR HFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 342 bits (877), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 203/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPR HFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 342 bits (876), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 203/307 (66%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE II+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPR HFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 311 bits (796), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/307 (51%), Positives = 194/307 (63%), Gaps = 36/307 (11%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE IS++VGQAG QIGNACWELY LEHGI PDG + + + TFF ET GK
Sbjct: 2 REVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGK 61
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR + +DLEP+VIDE I+ + LD
Sbjct: 62 FVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLD 121
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C +L E+ KKS+L F +YP+P VSTS
Sbjct: 122 RIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTS 181
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN VL+TH+TL + DC FM+DNEA YD+C+R L+I RPS+ NLN LI+QVVSS+TA
Sbjct: 182 VVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTA 241
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDG+LNVDL EFQTNLVPYPRIHFPL +YSP++S +KA+HE +V++IT CFEP N
Sbjct: 242 SLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGN 301
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 302 QMVKCDP 308
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 146/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I + GQ G QIG A WE C EHG+ +G +++ L +F+E +GK
Sbjct: 2 REIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDI---QKERLNVYFNEASSGK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR + +DLEP ID E+++ +D
Sbjct: 59 WVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
RR A+ C ++ +EF + F + PSP S +
Sbjct: 119 VIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VEPYNA LS H + + D F +DNEA YDICQR L + +PSY +LN L+S V+S +T
Sbjct: 179 RVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLR+ G LN DL + NLVP+PR+HF + Y+P+ + +TV ++T + F+ N
Sbjct: 239 SLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKN 298
Query: 284 QMVKCNP 290
M +P
Sbjct: 299 MMAAADP 305
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEAAGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEAAGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEAAGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 138/275 (50%), Gaps = 39/275 (14%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE +S+HVGQ G QI ++ W L EHG+ G K N A++ ++ FF + +GK
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSN--AAANSNMEVFFHKVRDGK 59
Query: 80 VVPRGVMIDLEPSV------------IDE--II------------------EETLDRFRR 107
VPR V++DLEP V DE I+ E+ +D+
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 108 LADSCXXXXXXXX----XXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTS 163
+ DS +L Q + KK F + PSP +S S
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VEPYNA+L+ L N D A ++DNEA + I + KLN P+Y +LN +I+ +VSS+TA
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTA 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPI 258
SLRF G LN DL+EF TNLVP+P HF +++P+
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPM 273
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 43/308 (13%)
Query: 23 ISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFD---ETPNGK 79
I V +GQAG QI + W+ CLEHGI P + + P + S +FF E+ +G
Sbjct: 7 IVVSIGQAGNQIAASFWKTVCLEHGIDPL-TGQTAPGVAPRGNWS--SFFSKLGESSSGS 63
Query: 80 VVPRGVMIDLEPSVID-----------------------------------EIIEETLDR 104
VPR +M+DLEPSVID E++ E + R
Sbjct: 64 YVPRAIMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 123
Query: 105 FRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPCVSTSV 164
D C L++++ + L + PSP VS+ V
Sbjct: 124 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 183
Query: 165 VEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITAS 224
EPYN V + ++ + D + DNEA +D+ RK NIE P+ ++LN LI++ ++ ITAS
Sbjct: 184 TEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITAS 243
Query: 225 LRFDGALNVD--LTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPA 282
+RF G L V+ L E TNLVP P +HF + ++P+ ++ E + + ++ F+
Sbjct: 244 MRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNG 303
Query: 283 NQMVKCNP 290
+ C+P
Sbjct: 304 SVFAACSP 311
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 42/306 (13%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I++ +GQ G QIG W+ C EHGI P+ + EE +D FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAI--VEEFATEGTDRK-DVFFYQADDEH 59
Query: 80 VVPRGVMIDLEPSVIDEII-------------------------------------EETL 102
+PR V++DLEP VI I+ E+
Sbjct: 60 YIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIF 119
Query: 103 DRFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPC-VS 161
D R AD +L + KK + ++P+ +S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 162 TSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
VV+PYN++L+ N DC ++DN A I +L+I+ PS++ +N+L+S ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMS-TTKAYHEGMTVAQITAECFE 280
T +LR+ G +N DL +L+P PR+HF +T Y+P+ + + A TV + +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 281 PANQMV 286
P N MV
Sbjct: 300 PKNVMV 305
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 136/306 (44%), Gaps = 42/306 (13%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I++ +GQ G QIG W+ C EHGI P+ + EE +D FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAI--VEEFATEGTDRK-DVFFYQADDEH 59
Query: 80 VVPRGVMIDLEPSVIDEII-------------------------------------EETL 102
+PR V++DLEP VI I+ E+
Sbjct: 60 YIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIF 119
Query: 103 DRFRRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXQLEQEFDKKSRLGFIIYPSPC-VS 161
D R AD +L + KK + ++P+ +S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 162 TSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
VV+PYN++L+ N DC ++DN A I +L+I+ PS++ +N+L+S ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMS-TTKAYHEGMTVAQITAECFE 280
T +LR+ G +N DL +L+P PR+HF +T Y+P+ + + A TV + +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 281 PANQMV 286
P N MV
Sbjct: 300 PKNVMV 305
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 225 LRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSP 257
L+F G LN L F+ P+P+ FP+T ++P
Sbjct: 269 LKFQGHLNRSLAGFRLEGGPFPKXEFPVTLFNP 301
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 155 YPSPCVSTSVVEP-------YNAVLSTHSTLHNVDCAFMMDNEATYD--ICQRKLNIERP 205
YP C++ VVEP Y +++ S L NV A+ + + Y + ++K +++
Sbjct: 78 YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK-ELQKW 136
Query: 206 SYNNLNRLISQVVSSITASLRF 227
+ ++ +++ V I A+L+F
Sbjct: 137 DFIHMIQML-YYVKDIPATLKF 157
>pdb|3T1E|A Chain A, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|B Chain B, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|E Chain E, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
pdb|3T1E|F Chain F, The Structure Of The Newcastle Disease Virus
Hemagglutinin- Neuraminidase (Hn) Ectodomain Reveals A
4-Helix Bundle Stalk
Length = 537
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 156 PSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNR-LI 214
P+ CV+ +PY V + TL V M+D+E Q +LN+ ++N++R I
Sbjct: 428 PNSCVTGVYTDPYPLVFHRNHTLRGV-FGTMLDDE------QARLNLVSAVFDNISRSRI 480
Query: 215 SQVVSSITAS 224
++V SS T +
Sbjct: 481 TRVSSSRTKA 490
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 155 YPSPCVSTSVVEP-------YNAVLSTHSTLHNVDCAFMMDNEATYD--ICQRKLNIERP 205
YP C++ VVEP Y +++ S L NV A+ + + Y + ++K +++
Sbjct: 78 YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK-ELQKW 136
Query: 206 SYNNLNRLISQVVSSITASLRF 227
+ ++ +++ V I A+L+F
Sbjct: 137 DFIHMIQML-YYVKDIPATLKF 157
>pdb|1JQE|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|1JQE|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Ile105 Polymorphic Variant) Complexed
With Adohcy And Antimalarial Drug Quinacrine
pdb|2AOW|A Chain A, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOW|B Chain B, Histamine Methyltransferase (Natural Variant I105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 155 YPSPCVSTSVVEP-------YNAVLSTHSTLHNVDCAFMMDNEATYD--ICQRKLNIERP 205
YP C++ VVEP Y +++ S L NV A+ + + Y + ++K +++
Sbjct: 78 YPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK-ELQKW 136
Query: 206 SYNNLNRLISQVVSSITASLRF 227
+ ++ +++ V I A+L+F
Sbjct: 137 DFIHMIQML-YYVKDIPATLKF 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,714,985
Number of Sequences: 62578
Number of extensions: 287702
Number of successful extensions: 657
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 57
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)