Query psy9165
Match_columns 290
No_of_seqs 170 out of 1361
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:33:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5.6E-92 1.2E-96 644.4 20.9 269 19-290 1-305 (443)
2 PLN00221 tubulin alpha chain; 100.0 4.1E-78 8.9E-83 585.5 21.2 271 19-290 1-307 (450)
3 PTZ00335 tubulin alpha chain; 100.0 1.1E-76 2.3E-81 575.3 21.5 271 19-290 1-307 (448)
4 KOG1374|consensus 100.0 1.4E-76 3E-81 543.6 18.5 268 18-288 1-308 (448)
5 PLN00222 tubulin gamma chain; 100.0 7.2E-76 1.6E-80 570.0 21.0 270 18-290 1-309 (454)
6 cd02188 gamma_tubulin Gamma-tu 100.0 1.6E-75 3.4E-80 564.7 21.4 268 20-290 1-307 (431)
7 PTZ00010 tubulin beta chain; P 100.0 3.5E-74 7.5E-79 557.9 21.5 269 19-290 1-305 (445)
8 cd02186 alpha_tubulin The tubu 100.0 3.3E-74 7.2E-79 556.8 21.0 270 20-290 1-306 (434)
9 PTZ00387 epsilon tubulin; Prov 100.0 1.3E-73 2.8E-78 554.9 20.7 261 19-290 1-332 (465)
10 cd02187 beta_tubulin The tubul 100.0 1.1E-72 2.5E-77 545.0 21.5 268 20-290 1-304 (425)
11 PLN00220 tubulin beta chain; P 100.0 1.7E-72 3.8E-77 546.8 20.8 269 19-290 1-305 (447)
12 cd02189 delta_tubulin The tubu 100.0 2.4E-67 5.2E-72 510.5 20.0 258 22-287 2-308 (446)
13 cd02190 epsilon_tubulin The tu 100.0 3.4E-64 7.3E-69 479.5 18.0 225 20-290 1-261 (379)
14 KOG1376|consensus 100.0 1.6E-63 3.5E-68 455.9 13.6 263 19-290 1-299 (407)
15 cd06059 Tubulin The tubulin su 100.0 3.1E-58 6.6E-63 439.7 18.3 262 21-290 1-264 (382)
16 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.1E-53 2.5E-58 400.5 18.9 260 21-289 1-262 (328)
17 PF00091 Tubulin: Tubulin/FtsZ 100.0 8.2E-47 1.8E-51 334.9 11.0 180 21-209 1-216 (216)
18 KOG1375|consensus 100.0 1.9E-39 4E-44 298.4 7.0 211 65-289 8-235 (369)
19 cd06060 misato Human Misato sh 100.0 1.3E-33 2.9E-38 275.5 15.9 227 20-258 1-302 (493)
20 cd02202 FtsZ_type2 FtsZ is a G 100.0 7.1E-31 1.5E-35 248.0 12.7 165 82-256 63-234 (349)
21 smart00864 Tubulin Tubulin/Fts 100.0 2.7E-30 5.9E-35 225.2 7.8 191 22-229 2-192 (192)
22 cd02191 FtsZ FtsZ is a GTPase 100.0 1.3E-28 2.8E-33 228.6 11.4 202 21-243 2-207 (303)
23 TIGR00065 ftsZ cell division p 99.9 4.4E-27 9.5E-32 221.9 10.6 202 21-243 19-224 (349)
24 cd02201 FtsZ_type1 FtsZ is a G 99.9 7.6E-27 1.6E-31 217.1 10.3 204 22-245 3-210 (304)
25 PRK13018 cell division protein 99.9 3E-26 6.4E-31 217.4 11.2 202 21-243 30-235 (378)
26 KOG2530|consensus 99.9 5.9E-25 1.3E-29 206.7 11.1 204 19-240 1-324 (483)
27 PRK09330 cell division protein 99.9 5.5E-24 1.2E-28 202.2 8.9 203 21-243 15-221 (384)
28 PF14881 Tubulin_3: Tubulin do 99.8 5.3E-19 1.1E-23 152.6 8.4 118 98-227 56-180 (180)
29 COG0206 FtsZ Cell division GTP 99.7 1.7E-16 3.6E-21 148.4 9.4 203 21-244 13-219 (338)
30 PF10644 Misat_Tub_SegII: Misa 98.6 4.1E-08 8.8E-13 78.9 4.5 64 20-92 1-68 (115)
31 PF03953 Tubulin_C: Tubulin C- 98.5 4.4E-08 9.5E-13 79.8 2.6 45 246-290 1-45 (126)
32 PF13809 Tubulin_2: Tubulin li 97.5 0.0012 2.7E-08 62.6 12.1 41 118-158 150-195 (345)
33 smart00865 Tubulin_C Tubulin/F 96.8 0.00053 1.2E-08 54.1 1.2 52 231-289 1-54 (120)
34 smart00864 Tubulin Tubulin/Fts 84.8 0.32 6.9E-06 42.2 0.3 25 70-97 3-27 (192)
35 PRK14484 phosphotransferase ma 68.7 4.4 9.6E-05 32.9 2.6 42 98-143 41-83 (124)
36 PTZ00010 tubulin beta chain; P 64.9 3.2 6.9E-05 40.9 1.2 69 22-91 135-206 (445)
37 PF03610 EIIA-man: PTS system 62.7 7.5 0.00016 30.6 2.8 32 98-129 40-71 (116)
38 PF12953 DUF3842: Domain of un 59.0 10 0.00023 31.0 3.0 26 128-153 8-34 (131)
39 PF01764 Lipase_3: Lipase (cla 57.2 13 0.00028 29.5 3.4 46 97-146 46-91 (140)
40 PLN02408 phospholipase A1 52.7 25 0.00055 33.8 5.0 63 96-162 179-243 (365)
41 TIGR00824 EIIA-man PTS system, 47.2 32 0.0007 27.2 4.1 34 98-131 41-74 (116)
42 COG0572 Udk Uridine kinase [Nu 44.1 31 0.00066 30.8 3.8 27 120-147 9-35 (218)
43 PLN02847 triacylglycerol lipas 43.7 28 0.0006 35.8 3.9 52 98-153 234-287 (633)
44 cd00006 PTS_IIA_man PTS_IIA, P 43.7 35 0.00076 27.0 3.9 32 98-129 40-71 (122)
45 cd00519 Lipase_3 Lipase (class 43.6 29 0.00063 30.3 3.7 44 98-145 111-154 (229)
46 PRK09461 ansA cytoplasmic aspa 41.9 72 0.0016 30.2 6.2 88 98-192 68-156 (335)
47 PF08259 Periviscerokin: Periv 41.6 12 0.00026 17.4 0.5 9 240-248 3-11 (11)
48 TIGR02364 dha_pts dihydroxyace 41.2 23 0.00051 28.6 2.5 41 98-141 41-83 (125)
49 cd00741 Lipase Lipase. Lipase 39.3 56 0.0012 26.5 4.6 43 98-144 11-53 (153)
50 PF06908 DUF1273: Protein of u 35.7 40 0.00086 29.0 3.2 88 94-190 24-111 (177)
51 COG4053 Uncharacterized protei 35.7 56 0.0012 28.7 4.0 64 91-157 61-124 (244)
52 cd00411 Asparaginase Asparagin 33.7 1.1E+02 0.0024 28.8 6.1 87 98-192 65-154 (323)
53 PRK13660 hypothetical protein; 33.7 97 0.0021 26.8 5.2 86 88-188 19-109 (182)
54 PF01713 Smr: Smr domain; Int 32.6 1.6E+02 0.0036 21.2 5.8 52 99-153 9-66 (83)
55 PF02879 PGM_PMM_II: Phosphogl 32.5 51 0.0011 25.0 3.1 27 116-142 20-46 (104)
56 PF00710 Asparaginase: Asparag 32.5 95 0.002 29.0 5.4 87 98-191 59-146 (313)
57 PF07693 KAP_NTPase: KAP famil 31.6 1.2E+02 0.0027 27.6 6.0 34 101-136 4-37 (325)
58 smart00870 Asparaginase Aspara 30.7 1.5E+02 0.0032 27.9 6.4 88 98-190 62-152 (323)
59 KOG1210|consensus 30.0 93 0.002 29.5 4.8 80 78-159 121-218 (331)
60 PF09370 TIM-br_sig_trns: TIM- 29.4 29 0.00063 31.9 1.4 32 100-139 2-33 (268)
61 COG4962 CpaF Flp pilus assembl 28.6 48 0.001 31.7 2.7 37 98-141 159-195 (355)
62 PRK13929 rod-share determining 27.8 73 0.0016 29.8 3.8 60 81-146 236-304 (335)
63 COG3958 Transketolase, C-termi 26.8 99 0.0021 29.0 4.3 44 102-154 234-280 (312)
64 TIGR00519 asnASE_I L-asparagin 25.2 1.7E+02 0.0038 27.6 5.9 70 98-174 64-134 (336)
65 TIGR02153 gatD_arch glutamyl-t 24.4 2.1E+02 0.0047 27.9 6.4 86 98-190 125-211 (404)
66 COG4427 Uncharacterized protei 24.1 83 0.0018 29.2 3.2 35 99-146 5-39 (350)
67 PLN02802 triacylglycerol lipas 23.3 1.2E+02 0.0027 30.5 4.5 62 97-162 310-373 (509)
68 KOG3010|consensus 22.9 77 0.0017 29.0 2.8 24 178-201 104-127 (261)
69 PF13508 Acetyltransf_7: Acety 22.2 1.1E+02 0.0025 21.4 3.2 22 129-150 40-61 (79)
70 PHA02777 major capsid L1 prote 21.4 51 0.0011 33.6 1.5 38 91-134 28-66 (555)
71 TIGR01732 tiny_TM_bacill conse 20.6 76 0.0016 18.6 1.5 12 125-136 1-12 (26)
72 TIGR00177 molyb_syn molybdenum 20.5 1.3E+02 0.0028 24.5 3.5 38 98-142 53-90 (144)
73 KOG3178|consensus 20.0 2.3E+02 0.0049 27.1 5.4 41 107-152 167-207 (342)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5.6e-92 Score=644.42 Aligned_cols=269 Identities=57% Similarity=1.008 Sum_probs=261.6
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||||||||++||+++|+||||+++|++ .+..+ ..+++.++||+|++.||||||||+|||||+||+++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~-~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~ 77 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTL-LDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVR 77 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCC-CCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhc
Confidence 899999999999999999999999999999999987 55443 34689999999999999999999999999999987
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|++
T Consensus 78 ~g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~ 157 (443)
T COG5023 78 NGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLRE 157 (443)
T ss_pred cCccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
|||||.+.+|+|+|.++.++++|||||++|++++|.|++|+++++||++|+++|.+.|++++|+|.++|++||++++++|
T Consensus 158 eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvT 237 (443)
T COG5023 158 EYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVT 237 (443)
T ss_pred hcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||||++|.||+++.+|||||||+||++++|+|+.+..+..+++.|+.|++++||+++|||++|||
T Consensus 238 tslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dp 305 (443)
T COG5023 238 TSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDP 305 (443)
T ss_pred heeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.1e-78 Score=585.47 Aligned_cols=271 Identities=65% Similarity=1.140 Sum_probs=256.0
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||||||||.+||+++|+||+++++|++ ...+..+..+++.++||+|+.+|+|+|||||||+||++|+++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~-~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~ 79 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM-PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVR 79 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCc-cCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhc
Confidence 899999999999999999999999999999999976 433222223568899999999999999999999999999877
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|+++|+|||++|+||++|||+++||++||||||+|++++|.|+|
T Consensus 80 ~~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d 159 (450)
T PLN00221 80 TGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (450)
T ss_pred cCccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
+||++.+.+++|+|+...++.++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 160 ~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T 239 (450)
T PLN00221 160 DYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLT 239 (450)
T ss_pred hcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccc
Confidence 99999999999999976688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||||.+|.|++++.+||||||++||++++++|+++..+..++++|+.+|++++|+++++|+.++|
T Consensus 240 ~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~ 307 (450)
T PLN00221 240 ASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDP 307 (450)
T ss_pred ccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCC
Confidence 99999999999999999999999999999999999998877778899999999999999999998875
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.1e-76 Score=575.33 Aligned_cols=271 Identities=66% Similarity=1.132 Sum_probs=255.7
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||||||||.+||+++|+||+++++|.+ ...+..+..+++.++||+|+.+|+|+|||||||+||++|+++
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~-~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~ 79 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQM-PSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVR 79 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCc-cCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcc
Confidence 899999999999999999999999999999999976 433222223568899999999999999999999999999877
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 80 ~~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d 159 (448)
T PTZ00335 80 TGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSV 159 (448)
T ss_pred cCccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
+||++++++++|+|+...++.++++||++|++++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|
T Consensus 160 ~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t 239 (448)
T PTZ00335 160 DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLT 239 (448)
T ss_pred hccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccc
Confidence 99999999999999976678999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||||.++.|++++.+||||||++||++++|+|+.+..+..++++++.+|++++|+++++|++++|
T Consensus 240 ~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~ 307 (448)
T PTZ00335 240 ASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDP 307 (448)
T ss_pred cccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCC
Confidence 99999999999999999999999999999999999998877778899999999999999999998875
No 4
>KOG1374|consensus
Probab=100.00 E-value=1.4e-76 Score=543.56 Aligned_cols=268 Identities=37% Similarity=0.679 Sum_probs=254.8
Q ss_pred CceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH
Q psy9165 18 AQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI 97 (290)
Q Consensus 18 ~m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i 97 (290)
|+|||||+|+||||||||.+||+.+|+||||.++|.. .+..+ ...|+.++||+|+++++|+|||||||+||+||+.+
T Consensus 1 m~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l-~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~ 77 (448)
T KOG1374|consen 1 MPREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGIL-EDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQI 77 (448)
T ss_pred CCceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcc-cchhh--hCccccccceeeccCCccccceeeeccchHHHhcc
Confidence 6899999999999999999999999999999999987 54443 34688999999999999999999999999999877
Q ss_pred -------------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHh
Q psy9165 98 -------------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQL 140 (290)
Q Consensus 98 -------------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l 140 (290)
.|+|+|.|+|++|.||+++||+++||++||||||+||.++|+|
T Consensus 78 ~~~~~s~l~n~eni~~s~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL 157 (448)
T KOG1374|consen 78 LSSPYSGLYNPENIFLSDHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERL 157 (448)
T ss_pred ccchhhcccCccceEEecCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHH
Confidence 8999999999999999999999999999999999999999999
Q ss_pred hhhhccCceeeeeecCCCC-CcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhh
Q psy9165 141 EQEFDKKSRLGFIIYPSPC-VSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVS 219 (290)
Q Consensus 141 ~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~ 219 (290)
+|+|||+.+.+++|||... .+|++|+|||++|+|++|.+.+|+++++||.+|.++|.+.+++++|+|+++|.+||..++
T Consensus 158 ~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims 237 (448)
T KOG1374|consen 158 NDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMS 237 (448)
T ss_pred HHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999863 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCccchhhhhhhhcccccCCcccccccccccccCccccc--cccCHHHHHHHhcCCCCceecc
Q psy9165 220 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYH--EGMTVAQITAECFEPANQMVKC 288 (290)
Q Consensus 220 ~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~--~~~s~~~l~~~~~~~~~~~~~~ 288 (290)
+.|.++||||+++.++.++...|+|+|++||++++|.|+++...... ++.|+.+.+++++.++|+|++.
T Consensus 238 ~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~ 308 (448)
T KOG1374|consen 238 ASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVST 308 (448)
T ss_pred hccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhc
Confidence 99999999999999999999999999999999999999998766554 8899999999999999999875
No 5
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=7.2e-76 Score=570.00 Aligned_cols=270 Identities=37% Similarity=0.637 Sum_probs=252.2
Q ss_pred CceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH
Q psy9165 18 AQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI 97 (290)
Q Consensus 18 ~m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i 97 (290)
||||||+||+||||||||.+||+++|+||+++++|++ ...++ ..+++.++||+|+++|+|+|||||||+||++|+++
T Consensus 1 Mm~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~-~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i 77 (454)
T PLN00222 1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGIL-EDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGI 77 (454)
T ss_pred CCccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCc-cCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhh
Confidence 5899999999999999999999999999999999976 33221 23578899999999999999999999999999877
Q ss_pred -------------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHh
Q psy9165 98 -------------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQL 140 (290)
Q Consensus 98 -------------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l 140 (290)
.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|
T Consensus 78 ~~~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L 157 (454)
T PLN00222 78 QNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEAL 157 (454)
T ss_pred ccCccccccCccceeecccCCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999
Q ss_pred hhhhccCceeeeeecCCCC-CcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhh
Q psy9165 141 EQEFDKKSRLGFIIYPSPC-VSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVS 219 (290)
Q Consensus 141 ~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~ 219 (290)
+|+||++.+++++|+|+.. .+++++++||++|++++|.+++|+++++||++|+++|.+.++++.|+|+++|++||++|+
T Consensus 158 ~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls 237 (454)
T PLN00222 158 NDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMS 237 (454)
T ss_pred HhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccC
Confidence 9999999999999999863 468899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCccchhhhhhhhcccccCCcccccccccccccC-ccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 220 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMST-TKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 220 ~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~-~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
++|+++||||.+|.|++++.+||||||++||++++++|+... +...++++++.++++++|+++++|+.+||
T Consensus 238 ~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~ 309 (454)
T PLN00222 238 ASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYA 309 (454)
T ss_pred CcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCC
Confidence 999999999999999999999999999999999999999765 34557889999999999999999998874
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.6e-75 Score=564.67 Aligned_cols=268 Identities=39% Similarity=0.691 Sum_probs=252.7
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH--
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-- 97 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-- 97 (290)
||||+||+||||||||++|||++|+||+++++|.+ ....+ ..+++.++||+|+++|+|+|||||||+||++|+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~-~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~ 77 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGIL-EDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQN 77 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCc-CCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhc
Confidence 79999999999999999999999999999999976 43321 23567899999999999999999999999999877
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 78 ~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 78 SEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred CccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCC-cccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcc
Q psy9165 143 EFDKKSRLGFIIYPSPCV-STSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~ 221 (290)
+||++.+++++|+|+... ++.++++||++|++++|.+++|+++++||++|+++|.+.++++.++|+++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998753 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccchhhhhhhhcccccCCcccccccccccccCc-cccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTT-KAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 222 t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~-~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
|+++||||.+|.|++++.+||||||++||++++++|+.+.. +..++++|+.+|++++|+++|+|++++|
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~ 307 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTAT 307 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCC
Confidence 99999999999999999999999999999999999999887 5778999999999999999999999875
No 7
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=3.5e-74 Score=557.93 Aligned_cols=269 Identities=42% Similarity=0.794 Sum_probs=254.7
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||||||||++||+++++||+++++|++ ...++ ...++.++||+|+.+|+|+||||+||+||++|+++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~-~~~~~--~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~ 77 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTY-QGDSD--LQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVR 77 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCC-CCCCc--ccccccceeecccCCCceEEeeeeccCChhhhhhhc
Confidence 899999999999999999999999999999999876 33322 12367789999999999999999999999999876
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|+++|+|||++|+||++|||+++||++||||||+|++++|.|+|
T Consensus 78 ~~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~d 157 (445)
T PTZ00010 78 AGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLRE 157 (445)
T ss_pred ccchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
+||++.+.+++|+|+...++.++++||++|++++|.+++|.+++|||++|+++|.+.++++.|+|+++|++||++|+++|
T Consensus 158 ey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t 237 (445)
T PTZ00010 158 EYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVT 237 (445)
T ss_pred hCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccc
Confidence 99999999999999976688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||||.+|.|++++.+||||||++||++++|+|+.+..+..++++++.+|++++|+++++|+++||
T Consensus 238 ~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~ 305 (445)
T PTZ00010 238 CCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADP 305 (445)
T ss_pred cceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCC
Confidence 99999999999999999999999999999999999998877778999999999999999999998875
No 8
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=3.3e-74 Score=556.79 Aligned_cols=270 Identities=70% Similarity=1.209 Sum_probs=254.2
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH--
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-- 97 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-- 97 (290)
||||+||+||||||||.+||+++|+||+++++|++ ......+..+++.++||+|+.+|+|+||||+||+||++|+++
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~-~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~ 79 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQM-PSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT 79 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCc-cCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhcc
Confidence 79999999999999999999999999999999976 333221234578899999999999999999999999999877
Q ss_pred ----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhh
Q psy9165 98 ----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQE 143 (290)
Q Consensus 98 ----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~de 143 (290)
.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 80 ~~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~ 159 (434)
T cd02186 80 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVD 159 (434)
T ss_pred CccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred hccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccc
Q psy9165 144 FDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223 (290)
Q Consensus 144 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~ 223 (290)
||++++.+++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.++++.++|+++|++||++|+++|+
T Consensus 160 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~ 239 (434)
T cd02186 160 YGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (434)
T ss_pred cCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccc
Confidence 99999999999999766788999999999999999999999999999999999999999889999999999999999999
Q ss_pred cccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 224 ~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
++||||.++.|++++.+||||||++||++++++|+.+..+..++++++.+|++++|+++++|+.++|
T Consensus 240 ~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~ 306 (434)
T cd02186 240 SLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDP 306 (434)
T ss_pred ceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCC
Confidence 9999999999999999999999999999999999998777778899999999999999999998874
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.3e-73 Score=554.93 Aligned_cols=261 Identities=36% Similarity=0.717 Sum_probs=244.8
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhC-CCCCCccccCCCCCCCCCCCcccccccCCC-----CC--cccceeeeCCC
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHG-IGPDGVRKCEENLLPASDPSLGTFFDETPN-----GK--VVPRGVMIDLE 90 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~-i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~-----g~--~~pRailvD~e 90 (290)
|||||+||+||||||||++||+++|+||+ ++++|++ +++.++||+|.++ |+ |+|||||||+|
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~----------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~E 70 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY----------DDARDSFFENVSENVNRPGKENLKARAVLVDME 70 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc----------cccccceecccccccccCCCccccCcccccCCC
Confidence 89999999999999999999999999999 7887754 5677899996432 44 99999999999
Q ss_pred CCchhHH------------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHH
Q psy9165 91 PSVIDEI------------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTS 134 (290)
Q Consensus 91 p~vi~~i------------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s 134 (290)
|+||+++ .|+++|+||+++|+||++|||+++||+|||||||+|+
T Consensus 71 p~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs 150 (465)
T PTZ00387 71 EGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGT 150 (465)
T ss_pred ccHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHH
Confidence 9999987 7999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCC----------
Q psy9165 135 LLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIER---------- 204 (290)
Q Consensus 135 ~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~---------- 204 (290)
+++|+|+|+||++.+++++|+|+. .++++++|||++|++++|.+++|+++++||++|+++|.+.++++.
T Consensus 151 ~lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~ 229 (465)
T PTZ00387 151 RILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKR 229 (465)
T ss_pred HHHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccc
Confidence 999999999999999999999986 578899999999999999999999999999999999988777663
Q ss_pred -----------------CchHHHHHHHHHhhhcccccccccCccchhhhhhhhcccccCCcccccccccccccCcccccc
Q psy9165 205 -----------------PSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHE 267 (290)
Q Consensus 205 -----------------~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~ 267 (290)
++|+++|++||++++++|+++||||.+|.|++++.+||||||++||++++++|+.+..+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~ 309 (465)
T PTZ00387 230 GPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVG 309 (465)
T ss_pred cccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccc
Confidence 789999999999999999999999999999999999999999999999999999887777788
Q ss_pred ccCHHHHHHHhcCCCCceeccCC
Q psy9165 268 GMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 268 ~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
++++.+|++++|+++++|+.++|
T Consensus 310 ~~s~~~l~~~l~~~~~~m~~~~~ 332 (465)
T PTZ00387 310 PRRLDQMFKDCLDPDHQMVAATP 332 (465)
T ss_pred cCCHHHHHHHHhcccCeeeecCC
Confidence 89999999999999999998875
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.1e-72 Score=544.99 Aligned_cols=268 Identities=43% Similarity=0.807 Sum_probs=252.1
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH--
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-- 97 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-- 97 (290)
||||+||+||||||||.+||+++|+||+++++|.+ ...++ ...++.++||+|+++|+|+||||+||+||++|+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~-~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 77 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTY-KGDSD--LQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRS 77 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCc-cCCcc--ccccccceeEEecCCCceeeeeeeccCChhhhhhhhc
Confidence 79999999999999999999999999999999865 33222 12367889999999999999999999999999876
Q ss_pred ----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhh
Q psy9165 98 ----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQE 143 (290)
Q Consensus 98 ----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~de 143 (290)
.|+++|+||+++|+||++|||+++||++||||||+|++++|+|+|+
T Consensus 78 ~~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~ 157 (425)
T cd02187 78 GPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 157 (425)
T ss_pred CcccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred hccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccc
Q psy9165 144 FDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223 (290)
Q Consensus 144 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~ 223 (290)
||++.+++++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 158 y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~ 237 (425)
T cd02187 158 YPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITT 237 (425)
T ss_pred cCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccce
Confidence 99999999999999866689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 224 ~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
++||||.+|.|++++.+||||||++||++++++|+.+..+..++++++.+|++++|+++++|++++|
T Consensus 238 s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~ 304 (425)
T cd02187 238 CLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDP 304 (425)
T ss_pred eeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCC
Confidence 9999999999999999999999999999999999998777778899999999999999999988764
No 11
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-72 Score=546.82 Aligned_cols=269 Identities=41% Similarity=0.789 Sum_probs=253.6
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||||||||.+||+++++||+++++|++ ...++ ...++.++||+|+++|+|+||||+||+||++|+++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~-~~~~~--~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~ 77 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTY-HGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVR 77 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCc-CCCcc--cccccccceeccCCCCcccceeEecCCcHHHHHHHh
Confidence 899999999999999999999999999999999876 43322 22367889999999999999999999999999877
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~ 157 (447)
T PLN00220 78 SGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (447)
T ss_pred cCccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
+||++.+++++|+|++..+++++++||++|++++|.+++|+++++||++|+++|.+.+++..++|+++|++||+.++++|
T Consensus 158 ~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it 237 (447)
T PLN00220 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (447)
T ss_pred hccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccc
Confidence 99999999999999976789999999999999999999999999999999999999899999999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||||.++.+++++.+||||||++||+.++++|+.......++++++.+|++++|+++++|++++|
T Consensus 238 ~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~ 305 (447)
T PLN00220 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP 305 (447)
T ss_pred hhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCC
Confidence 99999999999999999999999999999999999988776778899999999999999999987764
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=2.4e-67 Score=510.48 Aligned_cols=258 Identities=24% Similarity=0.450 Sum_probs=241.5
Q ss_pred EEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH----
Q psy9165 22 CISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI---- 97 (290)
Q Consensus 22 ii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i---- 97 (290)
||+||+||||||||++||+++++||+++++|.+ . ...+..++||+|..+++|+||||+||+||+||+++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~-~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~ 74 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGY-K------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKS 74 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCc-c------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCC
Confidence 899999999999999999999999999988865 2 12567889999999999999999999999999877
Q ss_pred ----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhh
Q psy9165 98 ----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQE 143 (290)
Q Consensus 98 ----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~de 143 (290)
.|+++|+|||++|+||++|||+++||++||||||+|++|+|+|+|+
T Consensus 75 ~~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~ 154 (446)
T cd02189 75 SGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDE 154 (446)
T ss_pred CCcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred hccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccc
Q psy9165 144 FDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223 (290)
Q Consensus 144 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~ 223 (290)
||++.+.+++|+|+. .+++++++||++|++++|.|++|+++++||++|+++|.+.++++.++|+++|++||++|+++|+
T Consensus 155 y~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~ 233 (446)
T cd02189 155 YPESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQ 233 (446)
T ss_pred cCccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999986 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-c-------CccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhc---CCCCceec
Q psy9165 224 SLRF-D-------GALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECF---EPANQMVK 287 (290)
Q Consensus 224 ~~rf-~-------g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~---~~~~~~~~ 287 (290)
+.|| + |..+.+++++.+||||||++||++++++|+++..+..++++++.+|+++++ .+++.|..
T Consensus 234 ~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~ 308 (446)
T cd02189 234 PSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEE 308 (446)
T ss_pred HhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccc
Confidence 9987 6 346999999999999999999999999999988777889999999999977 67777655
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.4e-64 Score=479.47 Aligned_cols=225 Identities=37% Similarity=0.738 Sum_probs=215.7
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH--
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI-- 97 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i-- 97 (290)
||||+||+||||||||++||+++|+|| ++||||+||+||++|+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh---------------------------------~~pR~v~iD~e~~~i~~i~~ 47 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH---------------------------------LKARAVLIDMEEGVVNEILK 47 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh---------------------------------cCCcceeccCChhHHHHHhc
Confidence 799999999999999999999999997 569999999999999876
Q ss_pred ----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhh
Q psy9165 98 ----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQE 143 (290)
Q Consensus 98 ----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~de 143 (290)
.|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+
T Consensus 48 ~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~ 127 (379)
T cd02190 48 GPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADE 127 (379)
T ss_pred CccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999
Q ss_pred hccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccc
Q psy9165 144 FDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223 (290)
Q Consensus 144 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~ 223 (290)
||++.+++++|+|+.. ++.++++||++|++++|.+++|+++++||++|+ +|+++|++||++|+++|+
T Consensus 128 y~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~ 194 (379)
T cd02190 128 FPEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTS 194 (379)
T ss_pred cCccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccc
Confidence 9999999999999984 888999999999999999999999999999997 799999999999999999
Q ss_pred cccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 224 ~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+.||||.+|.|++++.+||||||++||++++++|+.+.++..++++++.||++++|+++++|+.+||
T Consensus 195 ~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~ 261 (379)
T cd02190 195 SMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADP 261 (379)
T ss_pred eeecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCC
Confidence 9999999999999999999999999999999999998777778889999999999999999998764
No 14
>KOG1376|consensus
Probab=100.00 E-value=1.6e-63 Score=455.90 Aligned_cols=263 Identities=69% Similarity=1.178 Sum_probs=253.9
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH-
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI- 97 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i- 97 (290)
|||||+||+||+|.|||+++||++|.||||+++|++ ++.++....++.+++||+++..||++||++|||+||. ||++
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~-p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevr 78 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQM-PDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVR 78 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcC-CCCccccccCcccceeecccccccccceeEEEeccCc-cchhc
Confidence 899999999999999999999999999999999998 7765545557789999999999999999999999999 8877
Q ss_pred -----------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 -----------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 -----------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
+|..+++||+.++.|..+|||+++||+|||||||+++.++|.+..
T Consensus 79 tG~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~ 158 (407)
T KOG1376|consen 79 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSV 158 (407)
T ss_pred ccchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhh
Confidence 788899999999999999999999999999999999999999999
Q ss_pred hhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhccc
Q psy9165 143 EFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSIT 222 (290)
Q Consensus 143 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t 222 (290)
+|+|+....+++||++..++.+++|||.+|+.+...+++|+++++||++.+++|++++.++.|+|.++|++|+|+++++|
T Consensus 159 ~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsit 238 (407)
T KOG1376|consen 159 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSIT 238 (407)
T ss_pred hhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 223 ASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 223 ~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
+++||.|.+|.||.++++|||||| + |+|+.+..+..++++|+.++++++|++.|||++|||
T Consensus 239 aSlrf~g~lnvdl~efqTnlVpyp------l-yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP 299 (407)
T KOG1376|consen 239 ASLRFDGALNVDLTEFQTNLVPYP------L-YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 299 (407)
T ss_pred cccccCCcccccHHHHHhhCCCCc------c-cccchhhcccchhhhhHHhhccccccccccccccCC
Confidence 999999999999999999999999 2 999999999999999999999999999999999998
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=3.1e-58 Score=439.69 Aligned_cols=262 Identities=43% Similarity=0.668 Sum_probs=222.3
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCC--CCCCcccccccCCCCCcccceeeeCCCCCchhHHH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPA--SDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEII 98 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~--~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i~ 98 (290)
|||+||+||||||||++||+++ --++-|......-+.... .-+..+.++...+.|...+|+-..-. .+..
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g-----~~~~ 72 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIG-----PELI 72 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccC-----HHHH
Confidence 8999999999999999999988 333333211000000000 00122344444455666666654322 4558
Q ss_pred HhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhcc
Q psy9165 99 EETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTL 178 (290)
Q Consensus 99 d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~ 178 (290)
|+++|+||+++|+||.+|||+++||+|||||||+|++++|.|+|+||++.+++++|+|+...++.++++||++|++++|.
T Consensus 73 e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~ 152 (382)
T cd06059 73 DEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLL 152 (382)
T ss_pred HHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865557999999999999999
Q ss_pred cccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhcccccCCccccccccccc
Q psy9165 179 HNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPI 258 (290)
Q Consensus 179 e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~ 258 (290)
+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|+++||||.+|.|++++.++|||||++||++++++|+
T Consensus 153 e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~ 232 (382)
T cd06059 153 ENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPL 232 (382)
T ss_pred hcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceecccccccc
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 259 MSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 259 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
++..+..++.+++.++++++|+++++|+.++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (382)
T cd06059 233 ISYDSQTTEKLNLLQIINELFNNDNSFFSCDP 264 (382)
T ss_pred ccchhcccccCCHHHHHHHHhhcccceeecCC
Confidence 98777777889999999999999999987754
No 16
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.1e-53 Score=400.53 Aligned_cols=260 Identities=38% Similarity=0.652 Sum_probs=216.6
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCC--CCcccccccCCCCCcccceeeeCCCCCchhHHH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASD--PSLGTFFDETPNGKVVPRGVMIDLEPSVIDEII 98 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~--~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i~ 98 (290)
||++||+||||||||++||+++ .-++-|...-..-+...... +.-+.++...+.|...+++-....+ +..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~-----~~~ 72 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGE-----EYQ 72 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccH-----HHH
Confidence 7999999999999999999975 23333321100000000000 0112233444455555555554432 458
Q ss_pred HhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhcc
Q psy9165 99 EETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTL 178 (290)
Q Consensus 99 d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~ 178 (290)
|+++|+||+++|+||++|||+++||+|||||||+|++++|.|+|+||++++++++++|+...+ .++++||+++++++|.
T Consensus 73 e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~ 151 (328)
T cd00286 73 EEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRPYNSILTLHTLT 151 (328)
T ss_pred HHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCc-chhhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999997433 5899999999999999
Q ss_pred cccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhcccccCCccccccccccc
Q psy9165 179 HNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPI 258 (290)
Q Consensus 179 e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~ 258 (290)
+++|+++++||++|+++|.+.+....++|+++|++||++|+++|+++||||.+|.|++++.++|+|||++||++++++|+
T Consensus 152 e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~ 231 (328)
T cd00286 152 EHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPL 231 (328)
T ss_pred hcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCcc
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccCHHHHHHHhcCCCCceeccC
Q psy9165 259 MSTTKAYHEGMTVAQITAECFEPANQMVKCN 289 (290)
Q Consensus 259 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~ 289 (290)
....+..+.+.++.++++++|+++++++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (328)
T cd00286 232 DSEGSATPTTLRVAELVRQALRSKNQMVVCD 262 (328)
T ss_pred ccccccccccCCHHHHHHHHhCCCCeeeccC
Confidence 8876667788999999999999999997654
No 17
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=8.2e-47 Score=334.86 Aligned_cols=180 Identities=46% Similarity=0.855 Sum_probs=167.0
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHH---
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEI--- 97 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i--- 97 (290)
|||+||+||||||||.+||+++++||+++++... +..+++.++||+|..+++++||+|+||+||++++++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~ 73 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKS-------QYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRAS 73 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSS-------STTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccccc-------ccccccccceeeecccccccccccccccccccccccccc
Confidence 8999999999999999999999999999887221 234678899999999999999999999999999886
Q ss_pred ---------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhh
Q psy9165 98 ---------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEF 144 (290)
Q Consensus 98 ---------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~dey 144 (290)
.++++|+||+++|+||.+++|+++||+|||||||+++.|++.|+++|
T Consensus 74 ~~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y 153 (216)
T PF00091_consen 74 PKRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEY 153 (216)
T ss_dssp EETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccc
Confidence 68889999999999999999999999999999999999999999999
Q ss_pred ccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHH
Q psy9165 145 DKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNN 209 (290)
Q Consensus 145 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~ 209 (290)
|++++++++|+|+. .+.++++||+++++++|.+++|.++++||++|+++|.+.++++.|+|++
T Consensus 154 ~~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 154 PKKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp TTSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred cccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 99999999999994 3889999999999999999999999999999999999999998888864
No 18
>KOG1375|consensus
Probab=100.00 E-value=1.9e-39 Score=298.43 Aligned_cols=211 Identities=44% Similarity=0.809 Sum_probs=192.7
Q ss_pred CCCcccccccCCCCCcccceeeeCCCCCchhHHHHhHHHH-HHh---------------hhh-ccCCCcceeEEEecCCC
Q psy9165 65 DPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDR-FRR---------------LAD-SCSSLQGFLLFHSFGGG 127 (290)
Q Consensus 65 ~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i~d~i~d~-iR~---------------~~E-~cD~lqgf~i~~sl~GG 127 (290)
.++++++|.++..++|+||++++|+||++++++...-+.+ .|. ..| .||.+|||++.||+|||
T Consensus 8 ~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~~~sg~ghy~~ga~~~ds~~dclqgfql~hs~ggg 87 (369)
T KOG1375|consen 8 LERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDNGQSGKGHYTEGAELVDSSCDCLQGFQLTHSLGGG 87 (369)
T ss_pred eeeeeeeecccccccccchhheeeccCccccccccCccceeccCcCCccCccceeeeeeehhcccchhhcceeeeeccCc
Confidence 5688999999999999999999999999999882111111 110 001 79999999999999999
Q ss_pred CCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCch
Q psy9165 128 TGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSY 207 (290)
Q Consensus 128 TGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~ 207 (290)
||||.|++++..++++||.+...++++.|+.+ ++.+++|||+.|++++|.+++|.++++||++|+++|.+.+++..++
T Consensus 88 tGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~- 165 (369)
T KOG1375|consen 88 TGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS- 165 (369)
T ss_pred cccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC-
Confidence 99999999999999999999999999999986 9999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHhhhcccccccccCccchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHHHhcCCCCceec
Q psy9165 208 NNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVK 287 (290)
Q Consensus 208 ~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 287 (290)
++|...||||.+|.|++++..|++|+|++||+.++++|+.......++.+++++|+.+.|+.+|+|..
T Consensus 166 ------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a 233 (369)
T KOG1375|consen 166 ------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMTA 233 (369)
T ss_pred ------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccccccccccccccccCcchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cC
Q psy9165 288 CN 289 (290)
Q Consensus 288 ~~ 289 (290)
||
T Consensus 234 ~d 235 (369)
T KOG1375|consen 234 CD 235 (369)
T ss_pred hh
Confidence 76
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.3e-33 Score=275.48 Aligned_cols=227 Identities=20% Similarity=0.280 Sum_probs=181.2
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCC----CCCcccceeeeCCCCCchh
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETP----NGKVVPRGVMIDLEPSVID 95 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~----~g~~~pRailvD~ep~vi~ 95 (290)
|||||||+||+.|.||.+||+.....++..+++.. ...+.+++|+++. .-+|.||+|++|+......
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~---------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gs 71 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA---------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGH 71 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc---------ccCCCceeeeccccCCCceeEcCcEEEEecCCcccc
Confidence 79999999999999999999988666655544311 1345678899854 3479999999999875431
Q ss_pred --------------HH----------------------------------------------HHhHHHHHHhhhhccCCC
Q psy9165 96 --------------EI----------------------------------------------IEETLDRFRRLADSCSSL 115 (290)
Q Consensus 96 --------------~i----------------------------------------------~d~i~d~iR~~~E~cD~l 115 (290)
.+ .|+++|+||+++|+||.+
T Consensus 72 l~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~L 151 (493)
T cd06060 72 LPEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYL 151 (493)
T ss_pred cccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCccc
Confidence 01 789999999999999999
Q ss_pred cceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCC----cccchhhhhhhHhhhhcccccccccccCch-
Q psy9165 116 QGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCV----STSVVEPYNAVLSTHSTLHNVDCAFMMDNE- 190 (290)
Q Consensus 116 qgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~- 190 (290)
|||++++|++||| ||+|+.++|.|+|||||+.+..+++.|.... .+.++++||++|++++|.+++|+++|+.-.
T Consensus 152 QGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~ 230 (493)
T cd06060 152 QGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSG 230 (493)
T ss_pred ccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 9999999999999 8999999999999999999999999997532 256899999999999999999999999854
Q ss_pred HHHHHh-----hhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhcccccCCcccccccc-ccc
Q psy9165 191 ATYDIC-----QRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTY-SPI 258 (290)
Q Consensus 191 ~l~~~~-----~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~p~~~f~~~s~-~P~ 258 (290)
.++... ...+.++...-++..+++|.+|.++|.++|..+.. .+|.++..+|.+.-| ++...+- .|+
T Consensus 231 ~~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~ 302 (493)
T cd06060 231 TLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPF 302 (493)
T ss_pred ccccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCC
Confidence 222211 12344555677888999999999999999998654 568888888887555 5555542 344
No 20
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=7.1e-31 Score=248.01 Aligned_cols=165 Identities=21% Similarity=0.310 Sum_probs=143.9
Q ss_pred cceeeeCCCCCchhHHHHhHHHHHHhhhhccCC--CcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCC
Q psy9165 82 PRGVMIDLEPSVIDEIIEETLDRFRRLADSCSS--LQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC 159 (290)
Q Consensus 82 pRailvD~ep~vi~~i~d~i~d~iR~~~E~cD~--lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~ 159 (290)
+|..-...+|.+-.++.++.+|.||+++|.||. +|+|++++|+|||||||+++.+++.++++|+ +++++++++|+.
T Consensus 63 t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~- 140 (349)
T cd02202 63 VKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPAR- 140 (349)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCC-
Confidence 333444444444455588889999999999997 9999999999999999999999999999999 889999999997
Q ss_pred CcccchhhhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccc-----cCccchh
Q psy9165 160 VSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRF-----DGALNVD 234 (290)
Q Consensus 160 ~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf-----~g~~n~~ 234 (290)
.+..+++||+.+++++|.+++|.++++||++|++.+.. + .++|+.+|++|++.|+.++.+.|| ||.+|.|
T Consensus 141 -~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD 215 (349)
T cd02202 141 -EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLD 215 (349)
T ss_pred -CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCeEecc
Confidence 45688999999999999999999999999999998632 3 379999999999999999999999 9999999
Q ss_pred hhhhhhcccccCCccccccccc
Q psy9165 235 LTEFQTNLVPYPRIHFPLTTYS 256 (290)
Q Consensus 235 l~~l~~nLvP~p~~~f~~~s~~ 256 (290)
++++.++|... ++.+.+|+
T Consensus 216 ~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 216 ASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHHHHHHhccC---CeEEEEEE
Confidence 99999999865 56666653
No 21
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.96 E-value=2.7e-30 Score=225.21 Aligned_cols=191 Identities=30% Similarity=0.434 Sum_probs=156.4
Q ss_pred EEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCCCchhHHHHhH
Q psy9165 22 CISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEET 101 (290)
Q Consensus 22 ii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep~vi~~i~d~i 101 (290)
|..+++|+||..+-....+. ..++ ......++ ...+..+..+.....|..++|+-....+|+.-.++.+++
T Consensus 2 i~~~g~g~~g~r~v~~d~e~----~~i~--~i~~~t~~---~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~ 72 (192)
T smart00864 2 IKVFGVGGYGPNAVLVDLEP----GVVD--EVRANTDA---QALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEES 72 (192)
T ss_pred eEEEEeCCchhhHHhhhccc----CCce--EEEECCHH---HHhCCcccccchhcccccccccCCCCCChHHHHHHHHHH
Confidence 56789999999987765531 1111 11100000 001111233344456778899999999999889999999
Q ss_pred HHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhccccc
Q psy9165 102 LDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNV 181 (290)
Q Consensus 102 ~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~s 181 (290)
+|+||+++|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++++|+ ..|.++++||+++++++|.+++
T Consensus 73 ~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~ 145 (192)
T smart00864 73 LDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHV 145 (192)
T ss_pred HHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhC
Confidence 99999999999 89999999999999999999999999 999876 99999995 4788999999999999999999
Q ss_pred ccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccC
Q psy9165 182 DCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDG 229 (290)
Q Consensus 182 d~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g 229 (290)
|.++++||++|.++|.+.+.+ .++|+++|++||+.|+++|+++||||
T Consensus 146 d~~i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 146 DSLIVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred CEEEEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999877776 68999999999999999999999997
No 22
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=1.3e-28 Score=228.58 Aligned_cols=202 Identities=17% Similarity=0.281 Sum_probs=161.9
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCchhH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVIDE 96 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi~~ 96 (290)
.|..|.+|+||+++-+++++ .++..-..+ . .+.|..+.--.+++. |+...|..-...+|.+..+
T Consensus 2 ~i~viGvGg~G~n~v~~~~~-----~~~~~~~~i-a------inTd~~~L~~~~a~~ki~iG~~~t~g~GaG~~~~~G~~ 69 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLE-----YDKEGRSAV-A------VNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAE 69 (303)
T ss_pred EEEEEEECchHHHHHHHHHH-----cCCCCccEE-E------EECcHHHHhcCCCCcEEecCCccccCCCCCCCHHHHHH
Confidence 38899999999999999984 233221111 0 111111000011111 4445677777888888888
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhh
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 176 (290)
+.++++|+||+++|.||. |++++++|||||||+++.+++.+++.|+ ..+++.++|+. .|..+++||+.+++++
T Consensus 70 ~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--~~~~vvt~Pf~--~Eg~~~~~NA~~~l~~ 142 (303)
T cd02191 70 AAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--LTVAVVTLPFS--DEGGIRMLNAAEGFQT 142 (303)
T ss_pred HHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--CEEEEEeCCcc--cCCccchhhHHHHHHH
Confidence 899999999999999994 8999999999999999999999999986 45555556654 6778999999999999
Q ss_pred cccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhccc
Q psy9165 177 TLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLV 243 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLv 243 (290)
|.+++|.++++||++|.+++.+ +.++ ++|+.+|++|++.++++|..+||||.+|.|++++.+.|-
T Consensus 143 L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~ 207 (303)
T cd02191 143 LVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMD 207 (303)
T ss_pred HHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhc
Confidence 9999999999999999999976 7775 699999999999999999999999999999999988774
No 23
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.94 E-value=4.4e-27 Score=221.85 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=159.9
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCchhH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVIDE 96 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi~~ 96 (290)
.|..|.+|+||+++-+++++. ++.....+ . .+.|..+.-...+.. |+...|..-...+|.+-.+
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~~~~~~i-a------inTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~ 86 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GVEGVEFI-A------INTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRK 86 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CCCceEEE-E------EECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999998853 33221111 0 111111111111111 4455677777888888888
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhh
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 176 (290)
+.++.+|+||+.+|.||.+ ++++|+|||||||+++.+++.++ +|+ +..+++.++|+. .|..+++||+.+++++
T Consensus 87 ~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~-~l~vaivt~Pf~--~Eg~~r~~nA~~~l~~ 159 (349)
T TIGR00065 87 AAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG-ALTVAVVTKPFK--FEGLKRRKKAEEGLER 159 (349)
T ss_pred HHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-CCEEEEEeCCcc--ccchhhHHHHHHHHHH
Confidence 8999999999999999986 89999999999999997766655 555 456666667775 6778999999999999
Q ss_pred cccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhccc
Q psy9165 177 TLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLV 243 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLv 243 (290)
|.+++|.++++||++|+++|.+ +.+. .+|+.+|++|++.++++|.++||||.+|.|++++.+-|-
T Consensus 160 L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 160 LKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMS 224 (349)
T ss_pred HHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHh
Confidence 9999999999999999999976 7775 599999999999999999999999999999999988664
No 24
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=7.6e-27 Score=217.06 Aligned_cols=204 Identities=18% Similarity=0.282 Sum_probs=162.1
Q ss_pred EEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCchhHH
Q psy9165 22 CISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVIDEI 97 (290)
Q Consensus 22 ii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi~~i 97 (290)
|..|.+|+||+++-+.+++ .++.....+ . .+.|..+.-...+++ |+-.+|..-...+|.+-.+.
T Consensus 3 i~viGvGg~G~n~v~~l~~-----~~~~~~~~~-a------~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~~g~~~ 70 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIE-----SGLEGVEFI-A------ANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKA 70 (304)
T ss_pred EEEEEeCCcHHHHHHHHHH-----cCCCCceEE-E------EECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHHHHHHH
Confidence 7889999999999999884 333222211 0 111111111111111 44456777778888888888
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhhc
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHST 177 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 177 (290)
.++.+|+||+++|.||.+ ++++|+|||||||+++.+.+..+ +|+. ..+++.++|+. .|..+++||+.++++.|
T Consensus 71 a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-~~~~vvt~Pf~--~Eg~~~~~nA~~~l~~L 143 (304)
T cd02201 71 AEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-LTVAVVTKPFS--FEGKKRMRQAEEGLEEL 143 (304)
T ss_pred HHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC-CEEEEEeCCcc--ccchhHHHHHHHHHHHH
Confidence 999999999999999985 99999999999999999776655 5664 66777777775 67779999999999999
Q ss_pred ccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhccccc
Q psy9165 178 LHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPY 245 (290)
Q Consensus 178 ~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP~ 245 (290)
.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++.++++|.++|+||.+|.|++++.+.|-.-
T Consensus 144 ~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~ 210 (304)
T cd02201 144 RKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNK 210 (304)
T ss_pred HHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccC
Confidence 999999999999999999977777764 8999999999999999999999999999999999888643
No 25
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.93 E-value=3e-26 Score=217.45 Aligned_cols=202 Identities=19% Similarity=0.281 Sum_probs=166.0
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCchhH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVIDE 96 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi~~ 96 (290)
.|..|++|+||+++-+.+++ .++.....+ ..+.|..+.-...+.. |+-.+|..-...+|.+..+
T Consensus 30 ~I~ViGvGGaG~N~v~~m~~-----~~~~~v~~i-------aiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~ 97 (378)
T PRK13018 30 KIVVVGCGGAGNNTINRLYE-----IGIEGAETI-------AINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRK 97 (378)
T ss_pred eEEEEEeCCcHHHHHHHHHH-----cCCCCceEE-------EEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHH
Confidence 59999999999999999883 333222211 0112211111122211 5557888888999999999
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhh
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 176 (290)
..++.+|.||+.+|.||. |++++|+|||||||+++.+++.+++ ++ ...+++++.|+. .|...+..|+.+++++
T Consensus 98 aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~ 170 (378)
T PRK13018 98 AAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK--FEGRARMQKAEEGIER 170 (378)
T ss_pred HHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc--cccHhHHHHHHHHHHH
Confidence 999999999999999997 8999999999999999999999986 44 456788899996 5677899999999999
Q ss_pred cccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhccc
Q psy9165 177 TLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLV 243 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLv 243 (290)
|.+++|.++++||++|.++| +.+.+. ..|+.+|++|++.++++|.++||||.+|.|++++.+-|-
T Consensus 171 L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 171 LREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMK 235 (378)
T ss_pred HHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhc
Confidence 99999999999999999999 777776 589999999999999999999999999999999988664
No 26
>KOG2530|consensus
Probab=99.92 E-value=5.9e-25 Score=206.74 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=161.3
Q ss_pred ceeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCch
Q psy9165 19 QRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVI 94 (290)
Q Consensus 19 m~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi 94 (290)
||||+|||+|+..|-+|.+||++.-.-.+..+|-.. +... ...+ +++|+.... -.|+||.+++|+..+..
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~-~~~~----~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g 74 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEE-PPGE----LCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELG 74 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccC-Chhh----cCcc-hhhhhccccccCceeeccceeEEecCcccc
Confidence 899999999999999999999988666666554322 1110 0111 678887654 36999999999988754
Q ss_pred hHH-----------------------------------------------------------------------------
Q psy9165 95 DEI----------------------------------------------------------------------------- 97 (290)
Q Consensus 95 ~~i----------------------------------------------------------------------------- 97 (290)
..-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 75 TLKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 110
Q ss_pred --------------------------------HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhc
Q psy9165 98 --------------------------------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFD 145 (290)
Q Consensus 98 --------------------------------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp 145 (290)
.+++.|+||.++|+||.+|||++..++.+|+| |+++.++|.++|||+
T Consensus 155 p~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys 233 (483)
T KOG2530|consen 155 PRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYS 233 (483)
T ss_pred ccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhc
Confidence 88999999999999999999999999999996 999999999999999
Q ss_pred cCceeeeeecCCCCC-ccc---chh---hhhhhHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhh
Q psy9165 146 KKSRLGFIIYPSPCV-STS---VVE---PYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVV 218 (290)
Q Consensus 146 ~~~i~~~~v~P~~~~-~~~---~~~---~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i 218 (290)
++.+++++..|.+.. ++. +-. ..|.++++++|.+.|++++|+.--.. + -.-.+..+++|.++
T Consensus 234 ~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~----~~~~~tsA~~a~~~ 302 (483)
T KOG2530|consen 234 KKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------L----GDLWETSAKLARAF 302 (483)
T ss_pred CCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------c----ccHHHHHHHHHhhc
Confidence 999999999986432 222 222 56899999999999999999973221 1 13456789999999
Q ss_pred hcccccccccCccchhhhhhhh
Q psy9165 219 SSITASLRFDGALNVDLTEFQT 240 (290)
Q Consensus 219 ~~~t~~~rf~g~~n~~l~~l~~ 240 (290)
.++|.|.|.-+..|..++++++
T Consensus 303 ds~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 303 DSITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccccceecchhHHHHHHHHH
Confidence 9999999998887777666654
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=99.90 E-value=5.5e-24 Score=202.20 Aligned_cols=203 Identities=19% Similarity=0.293 Sum_probs=161.8
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCCchhH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPSVIDE 96 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~vi~~ 96 (290)
.|..|+||+||+++-+++++ .++.....+ . .+.|....-.+.+.. |+-+.|.+-...+|++-.+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~-----~~~~~v~fi-a------~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~ 82 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIE-----EGIQGVEFI-A------ANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRK 82 (384)
T ss_pred eEEEEEECCcHHHHHHHHHH-----cCCCCceEE-E------EeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHH
Confidence 59999999999999999884 343222222 0 112211111122221 5667788889999999999
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhh
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 176 (290)
+.++.+|.||+.+|.||.+ ++++++|||||||.++. +..++.+|+ ...+++...|+ ..|..+++||+..+++.
T Consensus 83 aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g-~ltvaVvt~PF--~fEG~~r~~nA~~gL~~ 155 (384)
T PRK09330 83 AAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG-ILTVAVVTKPF--SFEGKKRMKQAEEGIEE 155 (384)
T ss_pred HHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC-CcEEEEEecCc--cccchhHHHHHHHHHHH
Confidence 9999999999999999987 89999999999999995 555555776 34455555565 47888999999999999
Q ss_pred cccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhccc
Q psy9165 177 TLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLV 243 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLv 243 (290)
|.+++|.+++++|++|.+++.+.+.+. .+|+.+|.+|++.+.+++..+++||.+|.|+.++.+-|-
T Consensus 156 L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 156 LRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHh
Confidence 999999999999999999997777775 499999999999999999999999999999999987664
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.78 E-value=5.3e-19 Score=152.58 Aligned_cols=118 Identities=25% Similarity=0.366 Sum_probs=96.2
Q ss_pred HHhHHHH-HHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCce-eeeeecCCCCCcc-----cchhhhhh
Q psy9165 98 IEETLDR-FRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSR-LGFIIYPSPCVST-----SVVEPYNA 170 (290)
Q Consensus 98 ~d~i~d~-iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i-~~~~v~P~~~~~~-----~~~~~yN~ 170 (290)
.++++|+ ||+++|+||.+||||++..+.+|+| |+++.++|+|+|||||+.+ +.+++.+...... ...+.+|.
T Consensus 56 ~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~ 134 (180)
T PF14881_consen 56 EEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNK 134 (180)
T ss_pred hhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHH
Confidence 3456665 9999999999999999999999997 9999999999999999986 6666654432111 12456899
Q ss_pred hHhhhhcccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccc
Q psy9165 171 VLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRF 227 (290)
Q Consensus 171 ~lsl~~l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf 227 (290)
++++.+|.+.+++++|+.... +....++..+++|.+|.++|.|+|.
T Consensus 135 a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 135 ALSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 999999999999999998311 2245668999999999999999984
No 29
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.67 E-value=1.7e-16 Score=148.39 Aligned_cols=203 Identities=18% Similarity=0.223 Sum_probs=164.6
Q ss_pred eEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccC----CCCCcccceeeeCCCCCchhH
Q psy9165 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDET----PNGKVVPRGVMIDLEPSVIDE 96 (290)
Q Consensus 21 eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~----~~g~~~pRailvD~ep~vi~~ 96 (290)
-|.+|.+||||+++-+++. +++++.-..+ . .+.|....-...+ .-|..+.|.+-+..+|++..+
T Consensus 13 ~I~VIGvGg~G~n~v~~m~-----~~~~~gve~i-a------~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~ 80 (338)
T COG0206 13 RIKVIGVGGAGGNAVNRMI-----EEGVEGVEFI-A------INTDAQALKSSKADRKILIGESITRGLGAGANPEVGRA 80 (338)
T ss_pred eEEEEEeCCcchHHHHHHH-----HhhhCceEEE-E------eccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHH
Confidence 4899999999999999877 5565432222 1 1122222222222 227778999999999999999
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHhhhh
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 176 (290)
..++..+.|++.++..| .++++.++|||||+|.++.+++.+++ .....++++++|+. .|.....-|+..++..
T Consensus 81 aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~~A~~gi~~ 153 (338)
T COG0206 81 AAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRMENAEEGIEE 153 (338)
T ss_pred HHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHHHHHHHHHH
Confidence 99999999999887666 67899999999999999999999998 46788899999996 5666788999999999
Q ss_pred cccccccccccCchHHHHHhhhcCCCCCCchHHHHHHHHHhhhcccccccccCccchhhhhhhhcccc
Q psy9165 177 TLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVP 244 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l~~~~~~~l~i~~~~~~~~N~lia~~i~~~t~~~rf~g~~n~~l~~l~~nLvP 244 (290)
|.+++|.+|.++|+.|.+... ...+. .+|...|.++++.+.+++..+--||.+|.|+.++.+-+-.
T Consensus 154 L~~~~DtlIvi~Ndkll~~~~-~~~~~-~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 154 LREVVDTLIVIPNDKLLKGKD-KTPIA-EAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHhCCcEEEEecHHHHhccC-cccHH-HHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 999999999999999998764 33332 4788899999999999999999999999999999886665
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=98.61 E-value=4.1e-08 Score=78.89 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=46.4
Q ss_pred eeEEEEeeCCchhHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccccCCC----CCcccceeeeCCCCC
Q psy9165 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN----GKVVPRGVMIDLEPS 92 (290)
Q Consensus 20 ~eii~i~~GqcGnqiG~~~w~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~~fF~e~~~----g~~~pRailvD~ep~ 92 (290)
|||||||+|+..|-||.+||+.. |..+..+... + ...-..+++|++... ..|.||+|++|+...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~~----~---~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPDE----K---PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCccc----c---CcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 79999999999999999999854 6555322211 0 012356789988643 479999999998654
No 31
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=98.53 E-value=4.4e-08 Score=79.79 Aligned_cols=45 Identities=42% Similarity=0.888 Sum_probs=41.5
Q ss_pred CCcccccccccccccCccccccccCHHHHHHHhcCCCCceeccCC
Q psy9165 246 PRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290 (290)
Q Consensus 246 p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 290 (290)
||+||++++|+|+...++..+++.++.||++++|+++|+|++|||
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~ 45 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDP 45 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-T
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhcccccc
Confidence 899999999999999998889999999999999999999999986
No 32
>PF13809 Tubulin_2: Tubulin like
Probab=97.52 E-value=0.0012 Score=62.59 Aligned_cols=41 Identities=29% Similarity=0.509 Sum_probs=34.1
Q ss_pred eeEEEecCCCCCcchHHHHHHHhhhhh-----ccCceeeeeecCCC
Q psy9165 118 FLLFHSFGGGTGSGFTSLLLHQLEQEF-----DKKSRLGFIIYPSP 158 (290)
Q Consensus 118 f~i~~sl~GGTGSG~~s~lle~l~dey-----p~~~i~~~~v~P~~ 158 (290)
++|+.|++||||||+---++-.||+.+ ....+..+.++|..
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~ 195 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDA 195 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcc
Confidence 678899999999999888888888866 34567888899984
No 33
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=96.77 E-value=0.00053 Score=54.06 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=44.4
Q ss_pred cchhhhhhhhcccccCCcccccccccccccCccccccccCHHHHHH--HhcCCCCceeccC
Q psy9165 231 LNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITA--ECFEPANQMVKCN 289 (290)
Q Consensus 231 ~n~~l~~l~~nLvP~p~~~f~~~s~~P~~~~~~~~~~~~s~~~l~~--~~~~~~~~~~~~~ 289 (290)
+|.|++++.++|+|+| |.+++++|.... ++..+..++.. .+|++++++..++
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~ 54 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKG 54 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCc
Confidence 4789999999999999 999999999762 45678889988 9999998886654
No 34
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=84.76 E-value=0.32 Score=42.16 Aligned_cols=25 Identities=44% Similarity=0.832 Sum_probs=20.5
Q ss_pred cccccCCCCCcccceeeeCCCCCchhHH
Q psy9165 70 TFFDETPNGKVVPRGVMIDLEPSVIDEI 97 (290)
Q Consensus 70 ~fF~e~~~g~~~pRailvD~ep~vi~~i 97 (290)
.||.+ |++.||+|++|+||++++.+
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i 27 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEV 27 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEE
Confidence 45665 47899999999999988776
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=68.72 E-value=4.4 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=28.8
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHH-HHHHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSL-LLHQLEQE 143 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~-lle~l~de 143 (290)
.+...++|++.++++|. +|.+++.++ |||- +... .+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp--~n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE--MNAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH--HHHHHHHHhcCCC
Confidence 45556778888888888 999999999 7653 4333 34444434
No 36
>PTZ00010 tubulin beta chain; Provisional
Probab=64.89 E-value=3.2 Score=40.94 Aligned_cols=69 Identities=12% Similarity=-0.059 Sum_probs=46.4
Q ss_pred EEEEeeCCchhHHHHHHHHHHHHHhCCC---CCCccccCCCCCCCCCCCcccccccCCCCCcccceeeeCCCC
Q psy9165 22 CISVHVGQAGVQIGNACWELYCLEHGIG---PDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEP 91 (290)
Q Consensus 22 ii~i~~GqcGnqiG~~~w~~~~~Eh~i~---~~g~~~~~~~~~~~~~~~~~~fF~e~~~g~~~pRailvD~ep 91 (290)
+++-..|++|..+|+.+|+.|.+|++-. .-+.+ |..+..+...+.+|+.++...-..+..+.+++|-|.
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~-P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~a 206 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVF-PSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEA 206 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEec-CCcccCccchhhhHHHHhHHHHHhcCCceeeeccHH
Confidence 6677789999999999999999998521 11222 322211122345677777766667888999999543
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=62.72 E-value=7.5 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCC
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTG 129 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTG 129 (290)
.+...+++++.+++-+.-+|++++.++.|||-
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 55667777777788888899999999999853
No 38
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=59.05 E-value=10 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCcchHHHHHHHhhhhhcc-Cceeeee
Q psy9165 128 TGSGFTSLLLHQLEQEFDK-KSRLGFI 153 (290)
Q Consensus 128 TGSG~~s~lle~l~deyp~-~~i~~~~ 153 (290)
-|.|+|..+.+.||+++|. ..+++..
T Consensus 8 QGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 8 QGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred CCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 4668999999999999998 5666655
No 39
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=57.19 E-value=13 Score=29.50 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=30.5
Q ss_pred HHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhcc
Q psy9165 97 IIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDK 146 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~ 146 (290)
..+.+.+.|++..++.-...=.+.-||+||+ ++..+.-.+.+..+.
T Consensus 46 ~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 46 LYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp HHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 3667777788877666554334445899775 777777777766544
No 40
>PLN02408 phospholipase A1
Probab=52.69 E-value=25 Score=33.83 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=39.4
Q ss_pred HHHHhHHHHHHhhhhccCCCc-ceeEE-EecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcc
Q psy9165 96 EIIEETLDRFRRLADSCSSLQ-GFLLF-HSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVST 162 (290)
Q Consensus 96 ~i~d~i~d~iR~~~E~cD~lq-gf~i~-~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~ 162 (290)
.+.+++.+.|++.+++...-+ .+.++ ||+||+ ++...+-.|+..++..+.+....|-++..++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCccc
Confidence 346777888888887764322 34444 899775 7777777788777665444444444444444
No 41
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=47.17 E-value=32 Score=27.17 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcc
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSG 131 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG 131 (290)
.+++.+++++.+++.+.=+|++++.++-|||-.-
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 5566777777777777678999999999997543
No 42
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=44.08 E-value=31 Score=30.83 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEecCCCCCcchHHHHHHHhhhhhccC
Q psy9165 120 LFHSFGGGTGSGFTSLLLHQLEQEFDKK 147 (290)
Q Consensus 120 i~~sl~GGTGSG~~s~lle~l~deyp~~ 147 (290)
++-+++||+|||- +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668899999998 55777888888744
No 43
>PLN02847 triacylglycerol lipase
Probab=43.70 E-value=28 Score=35.75 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=34.4
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh--hhccCceeeee
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ--EFDKKSRLGFI 153 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d--eyp~~~i~~~~ 153 (290)
.+.+...|++.++++...+=+++-|||||| +++.+.-.|++ +|++...++|+
T Consensus 234 ~~~i~~~L~kal~~~PdYkLVITGHSLGGG----VAALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 234 AKLSTPCLLKALDEYPDFKIKIVGHSLGGG----TAALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccChHHH----HHHHHHHHHhcCCCCCCceEEEec
Confidence 555666777888888877666777999887 45555555564 45555444554
No 44
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=43.66 E-value=35 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=24.4
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCC
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTG 129 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTG 129 (290)
.+...+++++.+++.+.-+|++++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 44556666666777777789999999999864
No 45
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=43.64 E-value=29 Score=30.30 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=30.3
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhc
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFD 145 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp 145 (290)
.+.+.+.+++..++....+=++.-|||||+ +++.+.-.++..++
T Consensus 111 ~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~ 154 (229)
T cd00519 111 YNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGP 154 (229)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCC
Confidence 556666677777776666666777999876 66666666766653
No 46
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.85 E-value=72 Score=30.21 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCC-cccchhhhhhhHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCV-STSVVEPYNAVLSTHS 176 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~ 176 (290)
+..+.+.|++.. +..+||+|+|+.+- =-.++.+++.+-+..+|..+++=+-.|.... +|.....++++..-.+
T Consensus 68 w~~la~~I~~~~---~~~dG~VVtHGTDT---meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av~~A~~ 141 (335)
T PRK09461 68 WQHIADDIKANY---DDYDGFVILHGTDT---MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNALYVAAN 141 (335)
T ss_pred HHHHHHHHHHHh---ccCCeEEEeeccch---HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHHHHHcC
Confidence 556666666654 56889999995332 1346666666555556666677677787543 4555545555442222
Q ss_pred cccccccccccCchHH
Q psy9165 177 TLHNVDCAFMMDNEAT 192 (290)
Q Consensus 177 l~e~sd~~i~~dN~~l 192 (290)
.+...+.++|+++-+
T Consensus 142 -~~~~GV~V~f~~~i~ 156 (335)
T PRK09461 142 -YPINEVTLFFNNKLF 156 (335)
T ss_pred -CCCCeEEEEECCEee
Confidence 122356666666443
No 47
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=41.57 E-value=12 Score=17.37 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=6.4
Q ss_pred hcccccCCc
Q psy9165 240 TNLVPYPRI 248 (290)
Q Consensus 240 ~nLvP~p~~ 248 (290)
+.|+||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 357888873
No 48
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=41.22 E-value=23 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=27.0
Q ss_pred HHhHHHHHHhhhhccCC-CcceeEEEecCCCCCcchHH-HHHHHhh
Q psy9165 98 IEETLDRFRRLADSCSS-LQGFLLFHSFGGGTGSGFTS-LLLHQLE 141 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~-lqgf~i~~sl~GGTGSG~~s-~lle~l~ 141 (290)
.+...++|++.+|++++ =+|++++.++ ||+ =+.. ..++.+.
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 33456677777888865 7899999999 664 2323 3455554
No 49
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=39.29 E-value=56 Score=26.47 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEF 144 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~dey 144 (290)
.+.+.+.+++...++..-+=+++-||+||+ ++..+...++...
T Consensus 11 ~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 11 ANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 444555555555445556666677999775 6666666676653
No 50
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=35.68 E-value=40 Score=29.01 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=44.6
Q ss_pred hhHHHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcccchhhhhhhHh
Q psy9165 94 IDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLS 173 (290)
Q Consensus 94 i~~i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 173 (290)
+..|...+.+.|++.+|+ .+.= ++.+.+-|.- -.+..++-.|+.+||... ...++|+...+..-. . ..-.-
T Consensus 24 ~~~ik~~L~~~i~~lie~--G~~~--fi~GgalG~D-~waae~vl~LK~~yp~ik--L~~v~Pf~~q~~~W~-~-~~q~~ 94 (177)
T PF06908_consen 24 IQVIKKALKKQIIELIEE--GVRW--FITGGALGVD-LWAAEVVLELKKEYPEIK--LALVLPFENQGNNWN-E-ANQER 94 (177)
T ss_dssp HHHHHHHHHHHHHHHHTT--T--E--EEE---TTHH-HHHHHHHHTTTTT-TT-E--EEEEESSB-TTTTS--H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHC--CCCE--EEECCcccHH-HHHHHHHHHHHhhhhheE--EEEEEcccchhhcCC-H-HHHHH
Confidence 455677778888888884 2322 2222222221 235566777899999743 356778864322111 1 11234
Q ss_pred hhhcccccccccccCch
Q psy9165 174 THSTLHNVDCAFMMDNE 190 (290)
Q Consensus 174 l~~l~e~sd~~i~~dN~ 190 (290)
+..+.+.||.++.+..+
T Consensus 95 y~~il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 95 YQSILEQADFVVVVSER 111 (177)
T ss_dssp HHHHHHH-SEEEESSSS
T ss_pred HHHHHHhCCEEEEccCC
Confidence 45566677777766543
No 51
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.67 E-value=56 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCchhHHHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCC
Q psy9165 91 PSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPS 157 (290)
Q Consensus 91 p~vi~~i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~ 157 (290)
...++.+-..+.|.+|+.+|.-|.+.|+ --+-. |.|-|++=..++.=.+||++..++.|-.|-.
T Consensus 61 e~~lE~vN~aifevlr~y~eg~~Dl~Gi--Se~pd-gAGEG~SYAeAa~~~seY~Davi~aFDTYgg 124 (244)
T COG4053 61 ENLLEKVNKAIFEVLRKYAEGFDDLRGI--SEDPD-GAGEGLSYAEAASPISEYGDAVIIAFDTYGG 124 (244)
T ss_pred ccHHHHHHHHHHHHHHHHhhcccccccc--cCCCC-cCCCCchHhhhcCchhhcCceEEEEEecccc
Confidence 3445555667789999999999999886 23333 4577777666666678999999988887744
No 52
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=33.71 E-value=1.1e+02 Score=28.77 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=49.6
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCC-cccchhhhhhhHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCV-STSVVEPYNAVLSTHS 176 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~ 176 (290)
+..+.+.|++..++ .+||+++|+.+-= -.++..+..+-+. +|..+++=+..|.... +|.....++++. ...
T Consensus 65 w~~l~~~I~~~~~~---~dGiVVtHGTDTm---eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~-~A~ 136 (323)
T cd00411 65 WLKIAKDINELYDS---YDGFVITHGTDTM---EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY-VAA 136 (323)
T ss_pred HHHHHHHHHHHHHh---cCcEEEEcCcccH---HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH-HHc
Confidence 56666777766653 7899999953321 3455555554444 6766677677777542 344444444443 222
Q ss_pred ccc--ccccccccCchHH
Q psy9165 177 TLH--NVDCAFMMDNEAT 192 (290)
Q Consensus 177 l~e--~sd~~i~~dN~~l 192 (290)
-.+ ...+.+.|+++-+
T Consensus 137 ~~~~~~~gV~V~f~~~i~ 154 (323)
T cd00411 137 NYDSRGRGVLVVFNDRIF 154 (323)
T ss_pred CcccCCCeEEEEECCEEe
Confidence 222 4567777766543
No 53
>PRK13660 hypothetical protein; Provisional
Probab=33.66 E-value=97 Score=26.82 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=46.7
Q ss_pred CCCCCchhHHHHhHHHHHHhhhhccCCCcceeEEEecCCCCCcc-hHHHHHHHhhhhhccCceeeeeecCCCCCc----c
Q psy9165 88 DLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSG-FTSLLLHQLEQEFDKKSRLGFIIYPSPCVS----T 162 (290)
Q Consensus 88 D~ep~vi~~i~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG-~~s~lle~l~deyp~~~i~~~~v~P~~~~~----~ 162 (290)
|-+|+ +..|...+.+.|+..+|+ .+.=|+ .||.-|-- .+.-++-.|+.+||...+ ..++|+...+ +
T Consensus 19 ~~dp~-~~~IK~aL~~~l~~~~e~--G~~wfi----~ggalG~d~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~e 89 (182)
T PRK13660 19 DKDPK-IKYIKKAIKRKLIALLEE--GLEWVI----ISGQLGVELWAAEVVLELKEEYPDLKL--AVITPFEEHGENWNE 89 (182)
T ss_pred ccChh-hHHHHHHHHHHHHHHHHC--CCCEEE----ECCcchHHHHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCCH
Confidence 43454 344566667777777773 333222 23332221 255677789999997543 4567886432 2
Q ss_pred cchhhhhhhHhhhhcccccccccccC
Q psy9165 163 SVVEPYNAVLSTHSTLHNVDCAFMMD 188 (290)
Q Consensus 163 ~~~~~yN~~lsl~~l~e~sd~~i~~d 188 (290)
.-.+.| ..+.+.||.++.+.
T Consensus 90 ~~q~~y------~~i~~~aD~v~~vs 109 (182)
T PRK13660 90 ANQEKL------ANILKQADFVKSIS 109 (182)
T ss_pred HHHHHH------HHHHHhCCEEEEec
Confidence 223333 34556667666664
No 54
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=32.56 E-value=1.6e+02 Score=21.25 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=30.1
Q ss_pred HhHHHHHHhhhhcc--CCCcceeEEEecC----CCCCcchHHHHHHHhhhhhccCceeeee
Q psy9165 99 EETLDRFRRLADSC--SSLQGFLLFHSFG----GGTGSGFTSLLLHQLEQEFDKKSRLGFI 153 (290)
Q Consensus 99 d~i~d~iR~~~E~c--D~lqgf~i~~sl~----GGTGSG~~s~lle~l~deyp~~~i~~~~ 153 (290)
++..+.++..+++| ...+.+.++++-| +|. +-..+.+.|++.+....+..+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 34445555555554 3557888999887 443 6777777776655555554443
No 55
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=32.48 E-value=51 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=21.9
Q ss_pred cceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 116 QGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 116 qgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.+|-++.+...|+|+.+.+.+++.+..
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477899999999998888888888765
No 56
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=32.47 E-value=95 Score=29.01 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCC-CcccchhhhhhhHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC-VSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~ 176 (290)
+.++.+.|++.+++ .+||+++|+.+.= -.++..+..+-+..+|..+++=+..|... .+|.....++++....+
T Consensus 59 ~~~la~~i~~~~~~---~~GvVVtHGTDTm---e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av~~A~~ 132 (313)
T PF00710_consen 59 WLELARAIQAALDD---YDGVVVTHGTDTM---EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAVRVAAS 132 (313)
T ss_dssp HHHHHHHHHHHHTT---CSEEEEE--STTH---HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh---cCeEEEecCchHH---HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHHHHHhc
Confidence 56666677776643 8999999953321 23455555555555666666767778653 24555555555544444
Q ss_pred cccccccccccCchH
Q psy9165 177 TLHNVDCAFMMDNEA 191 (290)
Q Consensus 177 l~e~sd~~i~~dN~~ 191 (290)
-. ...+.++|+++-
T Consensus 133 ~~-~~GV~v~f~~~i 146 (313)
T PF00710_consen 133 PA-GPGVLVVFNGRI 146 (313)
T ss_dssp GG-TSSEEEEETTEE
T ss_pred cc-CCceEEEeCCCc
Confidence 33 566667777653
No 57
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.63 E-value=1.2e+02 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHH
Q psy9165 101 TLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLL 136 (290)
Q Consensus 101 i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~l 136 (290)
.-+.|-+.+...+.-.++ +-++.|.||||=++.+
T Consensus 4 ~a~~la~~I~~~~~~~~~--~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPF--VIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHHHHHhccCCCCCe--EEEEECCCCCCHHHHH
Confidence 344555556656544444 4468999999998876
No 58
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=30.72 E-value=1.5e+02 Score=27.89 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=47.6
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCC-cccchhhhhhhHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCV-STSVVEPYNAVLSTHS 176 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~ 176 (290)
+..+.+.|++.+. -+..+||+++|+.+-= -.++..+..+-+..+|..+++=+..|.... +|.....++++..-.
T Consensus 62 w~~la~~i~~~~~-~~~~dG~VVtHGTDTm---eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~A~- 136 (323)
T smart00870 62 WLKLAKRINEALA-DDGYDGVVVTHGTDTL---EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRVAA- 136 (323)
T ss_pred HHHHHHHHHHHhc-cCCCCEEEEecCCccH---HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHHHHc-
Confidence 4444555554332 2567899999953321 345555555444556766667677776542 444444455543322
Q ss_pred ccc--ccccccccCch
Q psy9165 177 TLH--NVDCAFMMDNE 190 (290)
Q Consensus 177 l~e--~sd~~i~~dN~ 190 (290)
-.+ ...+.++|++.
T Consensus 137 ~~~a~~~GV~V~f~~~ 152 (323)
T smart00870 137 SPEARGRGVLVVFNDE 152 (323)
T ss_pred CcccCCCEEEEEECCE
Confidence 222 34566666554
No 59
>KOG1210|consensus
Probab=30.03 E-value=93 Score=29.47 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=54.0
Q ss_pred CCcccceeeeCCCCCchhHH--------HHhHHHHHHhhhhccCCCcceeEEEecCCCCC-cchHHH---------HHHH
Q psy9165 78 GKVVPRGVMIDLEPSVIDEI--------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTG-SGFTSL---------LLHQ 139 (290)
Q Consensus 78 g~~~pRailvD~ep~vi~~i--------~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTG-SG~~s~---------lle~ 139 (290)
|..+| .+|.|++|.+++.. ..-+...+|.+-+.|+.= -|.++.|..|--| -|++++ |.+.
T Consensus 121 G~~v~-g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g-~I~~vsS~~a~~~i~GysaYs~sK~alrgLa~~ 198 (331)
T KOG1210|consen 121 GVAVP-GLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLG-RIILVSSQLAMLGIYGYSAYSPSKFALRGLAEA 198 (331)
T ss_pred Ccccc-cccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCc-EEEEehhhhhhcCcccccccccHHHHHHHHHHH
Confidence 44554 37889999888765 445567788887777422 5566665554433 244433 6889
Q ss_pred hhhhhccCceeeeeecCCCC
Q psy9165 140 LEQEFDKKSRLGFIIYPSPC 159 (290)
Q Consensus 140 l~deyp~~~i~~~~v~P~~~ 159 (290)
|++|..+..+-....+|.+-
T Consensus 199 l~qE~i~~~v~Vt~~~P~~~ 218 (331)
T KOG1210|consen 199 LRQELIKYGVHVTLYYPPDT 218 (331)
T ss_pred HHHHHhhcceEEEEEcCCCC
Confidence 99998887777788888763
No 60
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.42 E-value=29 Score=31.90 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=23.2
Q ss_pred hHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHH
Q psy9165 100 ETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQ 139 (290)
Q Consensus 100 ~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~ 139 (290)
++++++|+.+++-..+ +|+|.|+|++.+..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788888888766544 4567889999988766
No 61
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=28.60 E-value=48 Score=31.73 Aligned_cols=37 Identities=32% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLE 141 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~ 141 (290)
....-+.+|+.++.- . .+ =++||||||-++.+-..+.
T Consensus 159 ~~~~a~~L~~av~~r---~--NI--LisGGTGSGKTTlLNal~~ 195 (355)
T COG4962 159 IRRAAKFLRRAVGIR---C--NI--LISGGTGSGKTTLLNALSG 195 (355)
T ss_pred CHHHHHHHHHHHhhc---e--eE--EEeCCCCCCHHHHHHHHHh
Confidence 334455566655422 1 11 2479999999988755544
No 62
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=27.84 E-value=73 Score=29.84 Aligned_cols=60 Identities=18% Similarity=0.421 Sum_probs=36.9
Q ss_pred ccceeeeCCCC--CchhHHHHhHHHHHHhhhhccC-C-----Cc-ceeEEEecCCCCCcchHHHHHHHhhhhhcc
Q psy9165 81 VPRGVMIDLEP--SVIDEIIEETLDRFRRLADSCS-S-----LQ-GFLLFHSFGGGTGSGFTSLLLHQLEQEFDK 146 (290)
Q Consensus 81 ~pRailvD~ep--~vi~~i~d~i~d~iR~~~E~cD-~-----lq-gf~i~~sl~GGTGSG~~s~lle~l~deyp~ 146 (290)
.|+.+-++.+. .++.++.+++.+.|++.+++|+ . ++ |++++ || +-.-+.+.|.++++++.
T Consensus 236 ~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLt----GG--~s~lpgl~e~l~~~~~~ 304 (335)
T PRK13929 236 LPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILT----GG--GALLNGIKEWLSEEIVV 304 (335)
T ss_pred CCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEE----ch--hhhhhhHHHHHHHHHCC
Confidence 46666555332 2234457778888999999995 2 23 45443 33 22556678888888754
No 63
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=26.82 E-value=99 Score=29.00 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHhhhhccCCCcceeEE---EecCCCCCcchHHHHHHHhhhhhccCceeeeee
Q psy9165 102 LDRFRRLADSCSSLQGFLLF---HSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFII 154 (290)
Q Consensus 102 ~d~iR~~~E~cD~lqgf~i~---~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v 154 (290)
.+.|-+.+++. |++++ ||.-|| +||.++|.|.+++| +++--+++
T Consensus 234 ~~~i~~~A~~t----~~IvT~EeHsi~GG----lGsaVAEvlse~~p-~~~~riGv 280 (312)
T COG3958 234 EQAILKAARET----GRIVTAEEHSIIGG----LGSAVAEVLSENGP-TPMRRIGV 280 (312)
T ss_pred HHHHHHHHhhc----CcEEEEecceeecc----hhHHHHHHHHhcCC-cceEEecC
Confidence 34455556555 45565 798875 88899999999999 44433443
No 64
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=25.23 E-value=1.7e+02 Score=27.62 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCC-CcccchhhhhhhHhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC-VSTSVVEPYNAVLST 174 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl 174 (290)
+..+.+.|++..+ ..+||+|+|+.+- =-.++..+..+-+. +|..+++=+-.|... .+|.....++++...
T Consensus 64 w~~la~~I~~~~~---~~dG~VVtHGTDT---me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~~A 134 (336)
T TIGR00519 64 WVEIAEAVKKEYD---DYDGFVITHGTDT---MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVRAA 134 (336)
T ss_pred HHHHHHHHHHHHh---cCCeEEEccCCch---HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHHHH
Confidence 5566667766665 3889999995332 13455556554444 676667767778754 345555455555433
No 65
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.40 E-value=2.1e+02 Score=27.88 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=51.9
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCC-CcccchhhhhhhHhhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC-VSTSVVEPYNAVLSTHS 176 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~ 176 (290)
+..+.+.|++.++ |..+||+++|+.+- =-.++..+..+-+..++..+++=+..|... .+|.....++++..-..
T Consensus 125 w~~La~~I~~~~~--~~~dGvVVtHGTDT---M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~~A~~ 199 (404)
T TIGR02153 125 WIKIAEAVAKALK--EGADGVVVAHGTDT---MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRAATS 199 (404)
T ss_pred HHHHHHHHHHHhh--cCCCcEEEecCChh---HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHHHHhC
Confidence 5666777777665 34689999994332 134555555544444666666667777653 34555555555543332
Q ss_pred cccccccccccCch
Q psy9165 177 TLHNVDCAFMMDNE 190 (290)
Q Consensus 177 l~e~sd~~i~~dN~ 190 (290)
..+.+.++|+++
T Consensus 200 --~~~gV~V~f~g~ 211 (404)
T TIGR02153 200 --PIAEVTVVMHGE 211 (404)
T ss_pred --CCCcEEEEECCc
Confidence 445677888875
No 66
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=83 Score=29.19 Aligned_cols=35 Identities=37% Similarity=0.547 Sum_probs=29.7
Q ss_pred HhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhcc
Q psy9165 99 EETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDK 146 (290)
Q Consensus 99 d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~ 146 (290)
+-+...+|.+++.||++ ||-|...++|......+-
T Consensus 5 ~~~r~~l~~Qak~C~s~-------------GSpf~a~lle~Va~~l~~ 39 (350)
T COG4427 5 EHVRNALRSQAKVCDSL-------------GSPFTARLLELVAARLDL 39 (350)
T ss_pred HHHHHHHHHHhhhhccc-------------CCHHHHHHHHHHHhhccc
Confidence 44677899999999987 899999999999887763
No 67
>PLN02802 triacylglycerol lipase
Probab=23.33 E-value=1.2e+02 Score=30.51 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=36.7
Q ss_pred HHHhHHHHHHhhhhccCC--CcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeeeeecCCCCCcc
Q psy9165 97 IIEETLDRFRRLADSCSS--LQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVST 162 (290)
Q Consensus 97 i~d~i~d~iR~~~E~cD~--lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~ 162 (290)
+.+++++.|++++|+.-. .+=++.-||+||+ ++...+..|+...+....+....|-++..++
T Consensus 310 ~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGA----LAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN 373 (509)
T PLN02802 310 LSESVVGEVRRLMEKYKGEELSITVTGHSLGAA----LALLVADELATCVPAAPPVAVFSFGGPRVGN 373 (509)
T ss_pred HHHHHHHHHHHHHHhCCCCcceEEEeccchHHH----HHHHHHHHHHHhCCCCCceEEEEcCCCCccc
Confidence 467788888888887532 3334445899775 7777777777666554222333343333443
No 68
>KOG3010|consensus
Probab=22.86 E-value=77 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=15.8
Q ss_pred ccccccccccCchHHHHHhhhcCC
Q psy9165 178 LHNVDCAFMMDNEATYDICQRKLN 201 (290)
Q Consensus 178 ~e~sd~~i~~dN~~l~~~~~~~l~ 201 (290)
+-.+-++.-|||+.+++.+.+.|.
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLR 127 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLR 127 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcC
Confidence 333445566899998887766553
No 69
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.19 E-value=1.1e+02 Score=21.40 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.1
Q ss_pred CcchHHHHHHHhhhhhccCcee
Q psy9165 129 GSGFTSLLLHQLEQEFDKKSRL 150 (290)
Q Consensus 129 GSG~~s~lle~l~deyp~~~i~ 150 (290)
|-|+|+.|++.+.+.++.+.+.
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEE
Confidence 4689999999999999876553
No 70
>PHA02777 major capsid L1 protein; Provisional
Probab=21.45 E-value=51 Score=33.55 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCchhHH-HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHH
Q psy9165 91 PSVIDEI-IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTS 134 (290)
Q Consensus 91 p~vi~~i-~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s 134 (290)
|.|++++ ..-+-|+|-|. ...++.+.+||=|||+|-|-
T Consensus 28 PDVinKvE~~TlADkILK~------gSsgVffGGLGIGTG~GtGG 66 (555)
T PHA02777 28 PDIIKKIEGNTPADKILKW------GSTGVFFGGLGIGTGRGGGG 66 (555)
T ss_pred hhhhhhccCCcHHHHHHhh------hcceEEecccccccCCCCCC
Confidence 3456655 44456666664 56778888999999887655
No 71
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.59 E-value=76 Score=18.58 Aligned_cols=12 Identities=50% Similarity=1.154 Sum_probs=8.7
Q ss_pred CCCCCcchHHHH
Q psy9165 125 GGGTGSGFTSLL 136 (290)
Q Consensus 125 ~GGTGSG~~s~l 136 (290)
+||.|+|++-.+
T Consensus 1 ~gg~g~gf~liv 12 (26)
T TIGR01732 1 GGGYGGGFALIV 12 (26)
T ss_pred CCccCcchHHHH
Confidence 577888887654
No 72
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.50 E-value=1.3e+02 Score=24.53 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=22.9
Q ss_pred HHhHHHHHHhhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhh
Q psy9165 98 IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQ 142 (290)
Q Consensus 98 ~d~i~d~iR~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~d 142 (290)
.+.+.+.|++..++|| +++.+ ||+|-|---...+.+++
T Consensus 53 ~~~i~~~l~~~~~~~D-----liItt--GG~g~g~~D~t~~ai~~ 90 (144)
T TIGR00177 53 PEEIREILRKAVDEAD-----VVLTT--GGTGVGPRDVTPEALEE 90 (144)
T ss_pred HHHHHHHHHHHHhCCC-----EEEEC--CCCCCCCCccHHHHHHH
Confidence 4556666777667777 33443 77776655555555554
No 73
>KOG3178|consensus
Probab=20.02 E-value=2.3e+02 Score=27.14 Aligned_cols=41 Identities=20% Similarity=0.482 Sum_probs=29.0
Q ss_pred hhhhccCCCcceeEEEecCCCCCcchHHHHHHHhhhhhccCceeee
Q psy9165 107 RLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGF 152 (290)
Q Consensus 107 ~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~deyp~~~i~~~ 152 (290)
|.++.+..+.|+-...+.|||+| ..+-..++ .||+...+.+
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 44667777888999999988765 44444455 8998665554
Done!