RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9165
(290 letters)
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 487 bits (1257), Expect = e-174
Identities = 190/307 (61%), Positives = 227/307 (73%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE IS+H+GQAG+QIGNACWELYCLEHGI PDG ++ + D + TFF ET +GK
Sbjct: 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDAFNTFFSETGSGK 59
Query: 80 VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
VPR V IDLEP+VIDE+ I+ LD
Sbjct: 60 HVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLD 119
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD+C+ LQGFL+FHSFGGGTGSGF SLLL +L ++ KKS+L F +YPSP VST+
Sbjct: 120 RIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTA 179
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN+VL+THS L + DC+FM+DNEA YDIC+R L+IERP+Y NLNRLI+QVVSSITA
Sbjct: 180 VVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDL EFQTNLVPYPRIHFPL +Y+PI+S KAYHE ++VA+IT CFEPAN
Sbjct: 240 SLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPAN 299
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 300 QMVKCDP 306
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 458 bits (1181), Expect = e-162
Identities = 182/307 (59%), Positives = 222/307 (72%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE IS+H+GQAG+Q+GNACWEL+CLEHGI PDG ++N+ D + TFF ET GK
Sbjct: 2 REVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNI-GVEDDAFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR V +DLEP+VID EI++ LD
Sbjct: 61 HVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD+C+ LQGFL+FH+ GGGTGSG SLLL +L ++ KKS+LGF IYPSP VST+
Sbjct: 121 RIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN+VLSTHS L + D A M+DNEA YDIC+R L+IERP+Y NLNRLI+QV+SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHF L++Y+PI+S KAYHE ++VA+IT FEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPAN 300
Query: 284 QMVKCNP 290
M KC+P
Sbjct: 301 MMAKCDP 307
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 431 bits (1111), Expect = e-152
Identities = 178/307 (57%), Positives = 222/307 (72%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+H+GQAG+Q+GNACWELYCLEHGI PDG ++ + D + TFF ET GK
Sbjct: 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTV-GGGDDAFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDE------------------------------------IIEETLD 103
VPR V +DLEP+VIDE I++ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD+C+ LQGFL+F++ GGGTGSG SLLL +L ++ KKS+LGF +YPSP VST+
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN+VLSTHS L + D A ++DNEA YDIC+R L+IERP+Y NLNRLISQV+SS+TA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVD+TEFQTNLVPYPRIHF L++Y+P++S KAYHE ++VA+IT FEPA+
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300
Query: 284 QMVKCNP 290
M KC+P
Sbjct: 301 MMAKCDP 307
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 392 bits (1010), Expect = e-136
Identities = 156/311 (50%), Positives = 193/311 (62%), Gaps = 47/311 (15%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPAS----DPSLGTFFDET 75
RE I++ VGQ G QIGNA WE CLEHGIGPDG L S D FF E
Sbjct: 2 REIITLQVGQCGNQIGNAFWETLCLEHGIGPDGT-------LLDSSDEGDERFDVFFYEA 54
Query: 76 PNGKVVPRGVMIDLEPSVID------------------------------------EIIE 99
+GK VPR +++DLEP VID EII+
Sbjct: 55 SDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIID 114
Query: 100 ETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC 159
+ +D RR AD C LQGFLL HS GGGTGSG SLLL +L +E+ KK +L F ++P+P
Sbjct: 115 DVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPK 174
Query: 160 VSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVS 219
VS VVEPYN+VL+ H L N DC F++DNEA YDIC+R L I+ PSY++LN+LIS V+S
Sbjct: 175 VSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMS 234
Query: 220 SITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECF 279
S+T SLRF G LNVDL QTNLVPYPR+HFPL +Y+P S A HE +V+++T + F
Sbjct: 235 SVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLF 294
Query: 280 EPANQMVKCNP 290
+P NQMV C+P
Sbjct: 295 DPKNQMVSCDP 305
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 283 bits (725), Expect = 1e-93
Identities = 120/310 (38%), Positives = 166/310 (53%), Gaps = 45/310 (14%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSL---GTFFDETP 76
RE + + GQ G QIG WE+ EHG+ P G K SD L +F+E
Sbjct: 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYK------GDSDLQLERINVYFNEAS 54
Query: 77 NGKVVPRGVMIDLEPSVID------------------------------------EIIEE 100
GK VPR +++DLEP +D E+I+
Sbjct: 55 GGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS 114
Query: 101 TLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCV 160
LD R+ A+SC LQGF L HS GGGTGSG +LL+ ++ +E+ + F ++PSP V
Sbjct: 115 VLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKV 174
Query: 161 STSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSS 220
S +VVEPYNA LS H + N D F +DNEA YDIC R L + P+Y +LN L+S V+S
Sbjct: 175 SDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSG 234
Query: 221 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFE 280
IT LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+
Sbjct: 235 ITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFD 294
Query: 281 PANQMVKCNP 290
N M C+P
Sbjct: 295 AKNMMAACDP 304
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 257 bits (659), Expect = 3e-84
Identities = 115/278 (41%), Positives = 157/278 (56%), Gaps = 22/278 (7%)
Query: 21 ECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASD-PSLGTFFDETPN-- 77
E IS+ +GQ G QIGN WEL L D + ++ L FD
Sbjct: 1 EIISIQIGQCGNQIGNKFWELLIL-----VDL----DPRVINEILQGQLSKLFDPNQLVN 51
Query: 78 -----GKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGF 132
G RG ++ E+I+E LDR R+ + C SLQGF + HS GGGTGSG
Sbjct: 52 GKEGSGNNWARGYY-----TIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGL 106
Query: 133 TSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEAT 192
SLLL L E+ K F I+PSP S++VVEPYN++LS + L N D + DNEA
Sbjct: 107 GSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEAL 166
Query: 193 YDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL 252
Y+I R+L+I+ PS+++LN +I+Q++SSITASLRF G LN DL + TNLVP+PR+HF
Sbjct: 167 YNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLT 226
Query: 253 TTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290
+++P++S E + + QI E F N C+P
Sbjct: 227 PSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDP 264
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 255 bits (653), Expect = 1e-82
Identities = 115/307 (37%), Positives = 169/307 (55%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG+ WE+ EHGI P G + + +L + +++E G+
Sbjct: 2 REIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL---QLERINVYYNEATGGR 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR V++DLEP +D E+I+ LD
Sbjct: 59 YVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ A+SC LQGF + HS GGGTGSG +LL+ +L +E+ + + F ++PSP VS +
Sbjct: 119 VVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S V+S +T
Sbjct: 179 VVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + NLVP+PR+HF + ++P+ S + G++V ++T + F+ N
Sbjct: 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKN 298
Query: 284 QMVKCNP 290
M +P
Sbjct: 299 MMCAADP 305
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 244 bits (625), Expect = 6e-80
Identities = 105/279 (37%), Positives = 153/279 (54%), Gaps = 25/279 (8%)
Query: 21 ECISVHVGQAGVQIGNACWELYCL---EHGI------GPDGVRKCEENLLPASDPSLGTF 71
E +++ +GQAG QIG WE L E G+ GP + C L
Sbjct: 1 EIVTIQLGQAGNQIGAKFWEQLVLVDTEPGVIDETLSGPYRLLFCIGQL----------I 50
Query: 72 FDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSG 131
G G E E EE LD R+ A+ C SLQGF + HS GGGTGSG
Sbjct: 51 THGGGAGNNWAFGHETAGE-----EYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSG 105
Query: 132 FTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEA 191
+L +L+ E+ K+ ++ F I P P +V PYN++L+ H+ + DC ++DNEA
Sbjct: 106 LGPVLAERLKDEYPKRLKITFSILPGPDEGV-IVRPYNSILTLHTLTEHSDCLVVIDNEA 164
Query: 192 TYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFP 251
+DIC R L+I++P+++++N L++ +SS+T LRFDG+LNVDL E NLVP+PR+HF
Sbjct: 165 LFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFL 224
Query: 252 LTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290
+ Y+P+ S A + VA++ + NQMV C+P
Sbjct: 225 MVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDP 263
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 242 bits (620), Expect = 8e-78
Identities = 113/307 (36%), Positives = 166/307 (54%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ C EHGI P G + +L + +++E G+
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL---QLERINVYYNEASGGR 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR V++DLEP +D E+I+ LD
Sbjct: 59 YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ A++C LQGF + HS GGGTGSG +LL+ ++ +E+ + L F ++PSP VS +
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D ++DNEA YDIC R L + PS+ +LN LIS +S +T
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + NL+P+PR+HF + ++P+ S + +TV ++T + ++ N
Sbjct: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
Query: 284 QMVKCNP 290
M +P
Sbjct: 299 MMCAADP 305
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 206 bits (527), Expect = 6e-64
Identities = 107/310 (34%), Positives = 154/310 (49%), Gaps = 42/310 (13%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I++ VGQ G QIG+ W+ C EHGI PDG+ E+ D FF + +
Sbjct: 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGI--LEDFATDGGDRK-DVFFYQADDEH 57
Query: 80 VVPRGVMIDLEPSVIDEII-------------------------------------EETL 102
VPR ++IDLEP VI+ I EE L
Sbjct: 58 YVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEIL 117
Query: 103 DRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYP-SPCVS 161
D R AD SL+GF+L HS GGTGSG S LL +L + KK + ++P S
Sbjct: 118 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESS 177
Query: 162 TSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
VV+PYN++L+ + N DC ++DN A I +L+I+ P+++ +N L+S V+S+
Sbjct: 178 DVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKA-YHEGMTVAQITAECFE 280
T +LR+ G +N DL +L+P PR+HF +T+Y+P+ S A TV + +
Sbjct: 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQ 297
Query: 281 PANQMVKCNP 290
P N MV
Sbjct: 298 PKNIMVSTAT 307
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 179 bits (457), Expect = 3e-56
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 44/220 (20%)
Query: 23 ISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVP 82
I + VG AG IGNA WEL C EHGI PDG+ + + FF+E+ +G P
Sbjct: 2 IVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINV--------FFEESGDGVYGP 53
Query: 83 RGVMIDLEPSVIDEI---------------------------------IEETLDRFRRLA 109
R + ID +P V++EI EE+L+ R+
Sbjct: 54 RFIAIDTDPQVLNEIKAGNKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKEL 113
Query: 110 DSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYN 169
+ C L GF + GGGTGSG ++ L++ + + + +P S VV PYN
Sbjct: 114 EKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GALTVAVVTFPF--TSEGVVRPYN 170
Query: 170 AVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNN 209
A+L + + D ++DN+A +IC +L+I+ P++ N
Sbjct: 171 AILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAFKN 210
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 182 bits (463), Expect = 3e-54
Identities = 100/343 (29%), Positives = 157/343 (45%), Gaps = 84/343 (24%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDET---- 75
RE ++V VGQ G Q+G+ W++ EH + N P D + +FF+
Sbjct: 2 REIVTVQVGQCGNQLGHRFWDVALKEHK---------KINANPQYDDARDSFFENVSENV 52
Query: 76 -PNGKVV--PRGVMIDLEPSVIDEI----------------------------------- 97
GK R V++D+E V+++I
Sbjct: 53 NRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDK 112
Query: 98 -IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYP 156
I+ + RR + C SLQ F L HS GGGTGSG + +L LE EF R +++P
Sbjct: 113 YIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFP 172
Query: 157 SPC--VSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKL----------NIER 204
S V TS PYN+ + + + DC +DN+A +I L NI+R
Sbjct: 173 SAVDDVITS---PYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKR 229
Query: 205 PS-----------------YNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPR 247
Y+ +N +++Q++S++T+S+RF+G+LNVD+ E TNLVPYPR
Sbjct: 230 GPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPR 289
Query: 248 IHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290
+HF ++ +P++S + Q+ +C +P +QMV P
Sbjct: 290 LHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLDPDHQMVAATP 332
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 175 bits (447), Expect = 1e-52
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 86/309 (27%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I V VGQ G QIG W+L EH L A
Sbjct: 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------LKA---------------- 30
Query: 80 VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
R V+ID+E V++EI I+ L+
Sbjct: 31 ---RAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILE 87
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC--VS 161
+ R+ A+ C SLQ F + HS GGGTGSG + +L L EF + R +YPS V
Sbjct: 88 KIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVI 147
Query: 162 TSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
TS PYN+VL+ + + DC ++N+A ++ +N +++ ++ ++
Sbjct: 148 TS---PYNSVLALRELIEHADCVLPIENQALVP------------FDAMNSIVANLLLNL 192
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEP 281
T+S+RF+G+LNVDL E NLVP+PR+HF +++ SP+ + Q+ ++ F
Sbjct: 193 TSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSR 252
Query: 282 ANQMVKCNP 290
+Q+++ +P
Sbjct: 253 NHQLIRADP 261
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 177 bits (450), Expect = 2e-52
Identities = 100/309 (32%), Positives = 147/309 (47%), Gaps = 42/309 (13%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I++ VGQ G QIG W+ CLEHGI DG+ E+ D FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI--LEDFATQGGDRK-DVFFYQADDEH 59
Query: 80 VVPRGVMIDLEPSVIDEII-------------------------------------EETL 102
+PR ++IDLEP VI+ I E+ +
Sbjct: 60 YIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEQVEEDIM 119
Query: 103 DRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVST 162
D R AD SL+GF+L HS GGTGSG S LL L + KK + ++P+ ++
Sbjct: 120 DMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETS 179
Query: 163 SVV-EPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
VV +PYN++L+ N DC ++DN A I +L++E P++ N L+S V+S+
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAS 239
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPI-MSTTKAYHEGMTVAQITAECFE 280
T +LR+ G +N DL +L+P PR HF +T Y+P+ + TV + +
Sbjct: 240 TTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQ 299
Query: 281 PANQMVKCN 289
N MV
Sbjct: 300 TKNIMVSSY 308
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 151 bits (384), Expect = 2e-45
Identities = 55/201 (27%), Positives = 79/201 (39%), Gaps = 52/201 (25%)
Query: 70 TFFDETPNGKVVPRGVMIDLEPSVIDEI-------------------------------- 97
F G P V +DLEP VID +
Sbjct: 3 KVFGV---GGGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQAGNNWTRGLGAG 59
Query: 98 ---------IEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKS 148
EE+LD R + G + GGGTG+G ++ +E+ +
Sbjct: 60 ADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIA-KEYGILT 115
Query: 149 RLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYN 208
+ + P VV PYNA L +VD ++DN+A DIC RKL + RP++
Sbjct: 116 -VAVVTKPF--SFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRKLPL-RPAFK 171
Query: 209 NLNRLISQVVSSITASLRFDG 229
+ N L++Q VS IT +RF G
Sbjct: 172 DANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 125 bits (316), Expect = 4e-33
Identities = 68/301 (22%), Positives = 122/301 (40%), Gaps = 60/301 (19%)
Query: 22 CISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVV 81
++V +GQ G Q+G+ ++ E ++ + FF E +G+ +
Sbjct: 2 VVTVQLGQCGNQLGHELFDTLAKE-------ASSSDDEGYKYERDAQERFFSEKSDGQPI 54
Query: 82 PRGVMIDLEPSVI--------------------------------------DEIIEETLD 103
R V++D+EP VI +I E+ LD
Sbjct: 55 ARSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILD 114
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ + C S +GFL+ HS GGTGSG S + L E+ + L +++P
Sbjct: 115 LIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPY-TTGEV 173
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLIS-QVVSSIT 222
+V+ YN VL+ + D +++N+ + IC + N++ S +++N++I+ Q+ S +
Sbjct: 174 IVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQ 233
Query: 223 ASLRFDGALNVD-------LTEFQTNLVPYPRIHFPLTTYS-PIMSTTK----AYHEGMT 270
SL G+ L + +L P+P LT S P M +
Sbjct: 234 PSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKL-LTIRSLPQMPEKSLAFSTFSWSAL 292
Query: 271 V 271
+
Sbjct: 293 L 293
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 68.7 bits (169), Expect = 1e-14
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 246 PRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290
PR+HF +T Y+P+ S KA H +V ++T + F+P N MV C+P
Sbjct: 1 PRLHFLMTGYAPLTSKGKASHRKTSVLELTRQLFDPKNMMVACDP 45
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 49.9 bits (120), Expect = 7e-08
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 231 LNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAE--CFEPANQMVKC 288
+NVD + +T +VP F + P +A + A++ E +N M
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGENRA----LEAAELAISSPLLEDSNIMGAK 53
Query: 289 NP 290
Sbjct: 54 GV 55
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 48.5 bits (116), Expect = 2e-06
Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 78 GKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADS--CSSLQGFLLFHSFGGGTGSGFTSL 135
G+ +G + + + E+ EE L+ R D S L+ GGGTGSG +
Sbjct: 59 GQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPV 118
Query: 136 LLHQLEQEFDKKSRLGFIIYPS---PCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEAT 192
L +L++ +++ +Y P NA S + D + DN+A
Sbjct: 119 LAKELKERYEEP------VYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAW 172
Query: 193 YDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNV-----DLTEFQTNL 242
RK +Y+ +N I++ + + + + +V D +E L
Sbjct: 173 K----RKGESVEEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTL 223
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 32.9 bits (75), Expect = 0.18
Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 78 GKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLL 137
G+ +G+ P + E EE + + + GGGTG+G ++
Sbjct: 51 GQARTKGLGAGANPELGAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVA 107
Query: 138 HQLEQEFDKKSRLGFIIYP---SPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYD 194
L+ R+G + P + NA + + VD ++ NE
Sbjct: 108 EHLK-------RIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQ 160
Query: 195 ICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNL 242
I + K ++E ++++ + ++ + V + ++ +G +NVD + + +
Sbjct: 161 IGE-KASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVM 206
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 30.8 bits (70), Expect = 0.86
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 99 EETLDRFRRLADSCSSLQGF-LLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPS 157
EE DR R + C LQGF +L G +G G + L L+ E+ K S L + P
Sbjct: 135 EEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVG--AKCLEHLQDEYGKASLLFPGLPPV 192
Query: 158 PCVSTSVVEPYNAVLSTHSTLHN 180
S + VL+T L
Sbjct: 193 IPPDASSDKNSIRVLNTALGLAQ 215
>gnl|CDD|204145 pfam09128, RGS-like, Regulator of G protein signalling-like domain.
Members of this family adopt a structure consisting of
twelve helices that fold into a compact domain that
contains the overall structural scaffold observed in
other RGS proteins and three additional helical elements
that pack closely to it. Helices 1-9 comprise the RGS
(pfam00615) fold, in which helices 4-7 form a classic
antiparallel bundle adjacent to the other helices. Like
other RGS structures, helices 7 and 8 span the length of
the folded domain and form essentially one continuous
helix with a kink in the middle. Helices 10-12 form an
apparently stable C-terminal extension of the structural
domain, and although other RGS proteins lack this
structure, these elements are intimately associated with
the rest of the structural framework by hydrophobic
interactions. Members of the family bind to active
G-alpha proteins, promoting GTP hydrolysis by the alpha
subunit of heterotrimeric G proteins, thereby
inactivating the G protein and rapidly switching off G
protein-coupled receptor signalling pathways.
Length = 188
Score = 29.7 bits (67), Expect = 1.4
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 70 TFFDETPNGKV-VPRGVMIDLEPSVIDEIIEETLDRF------RRLADSCSSLQGFLLFH 122
TF + KV VP + D++ I EE L R R L + L+ F
Sbjct: 61 TFLEPNAPLKVPVPEELAADIDRRRSRLIPEEDLRRVFQESQQRALPEIQRQLEDFRQKR 120
Query: 123 SFGGGTGSGFTSLLLHQLEQEFDKKSRLG 151
S G G G L +++ + ++ R+
Sbjct: 121 SMGLGLAEGELDQLDQEVDGDRVRERRVA 149
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 30.3 bits (68), Expect = 1.5
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 190 EATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRI 248
EA D+C ++++ +++L + VS + + + NV+ T Q NL RI
Sbjct: 52 EALIDLCHDFPHLQKELEILISKLKTSTVSDNSEDYNYLVSHNVNFTIPQCNLENKGRI 110
>gnl|CDD|219752 pfam08224, DUF1719, Domain of unknown function (DUF1719). This is
a domain of unknown function. It may have a role in
ATPase activation.
Length = 234
Score = 27.8 bits (62), Expect = 5.6
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 94 IDEIIEETLDRFRRLADSCSSLQGFLLFHSFGG 126
ID T+ RF AD S FL F FGG
Sbjct: 25 IDSSSRSTVRRFEWFADGASE---FLRFVEFGG 54
>gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in
DNA repair [DNA replication, recombination, and repair].
Length = 354
Score = 28.0 bits (63), Expect = 5.7
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 41 LYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGVMIDLEPSVIDEIIEE 100
LY L GI VR E+ L S + TF ++ + +L + + EE
Sbjct: 222 LYRLARGIDNRPVR--EQALRAKSIGAESTFEEDLTD--------AEELIERLRARLGEE 271
Query: 101 TLDRFRRLADSCSSLQGFLLFHSFGG 126
+ R R+ ++ L F
Sbjct: 272 VVSRLRKSGRHGRTVSVKLKTADFPT 297
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 27.6 bits (62), Expect = 6.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 82 PRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLL 136
P + L+ + + + F R A +G +L GGTGSG T+LL
Sbjct: 98 PSSRSLTLDDLGMTGAFDADIAEFLRQAVQA---RGNILV---SGGTGSGKTTLL 146
>gnl|CDD|220065 pfam08902, DUF1848, Domain of unknown function (DUF1848). This
family of proteins are functionally uncharacterized. The
C-terminus contains a cluster of cysteines that are
similar to the iron-sulfur cluster found at the
N-terminus of pfam04055.
Length = 264
Score = 27.6 bits (62), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 88 DLEPSVIDEIIEETLDRFRRLAD 110
DLEP+V ++ ++ FRRL++
Sbjct: 87 DLEPNVPS--KDQRIETFRRLSE 107
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A
synthase N terminal.
Length = 171
Score = 27.1 bits (60), Expect = 8.4
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 153 IIYPSPCVSTSVVEPYNAVLSTHST--LHNVDCAFMMDNEATYDIC----QRKLNIERPS 206
I +PS V + +E Y+ V + T L F D E +C Q+ +
Sbjct: 9 IYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKLMERNNLD 68
Query: 207 YNNLNRL 213
Y+ + RL
Sbjct: 69 YDCIGRL 75
>gnl|CDD|204739 pfam11768, DUF3312, Protein of unknown function (DUF3312). This is
a eukaryotic family of uncharacterized proteins. This
family shows similarity to WD40 repeat proteins.
Length = 544
Score = 27.8 bits (62), Expect = 9.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 23 ISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPN 77
I+ H A V + N EL C + + P ++ E++ P+S L +F +
Sbjct: 304 IAWHPDSAIVLVANEQGELQCFDIALSPIRMQLLSEDVTPSSTLDLSKYFVGSIT 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,473,276
Number of extensions: 1359072
Number of successful extensions: 1288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 48
Length of query: 290
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 194
Effective length of database: 6,679,618
Effective search space: 1295845892
Effective search space used: 1295845892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)