RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9165
(290 letters)
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 432 bits (1113), Expect = e-152
Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 37/308 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
I V +GQAG QI + W+ CLEHGI P + + S + E+ +G
Sbjct: 4 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 63
Query: 80 VVPRGVMIDLEPSVID-----------------------------------EIIEETLDR 104
VPR +M+DLEPSVID E++ E + R
Sbjct: 64 YVPRAIMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 123
Query: 105 FRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSV 164
D C ++ G ++ H+ GGGTGSGF +LL+ L++++ + L + PSP VS+ V
Sbjct: 124 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 183
Query: 165 VEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITAS 224
EPYN V + ++ + D + DNEA +D+ RK NIE P+ ++LN LI++ ++ ITAS
Sbjct: 184 TEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITAS 243
Query: 225 LRFDGALNVD--LTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPA 282
+RF G L V+ L E TNLVP P +HF + ++P+ ++ E + + ++ F+
Sbjct: 244 MRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNG 303
Query: 283 NQMVKCNP 290
+ C+P
Sbjct: 304 SVFAACSP 311
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 432 bits (1112), Expect = e-152
Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 42/310 (13%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE I++ +GQ G QIG W+ C EHGI P+ + + FF + +
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATE---GTDRKDVFFYQADDEH 59
Query: 80 VVPRGVMIDLEPSVID-------------------------------------EIIEETL 102
+PR V++DLEP VI +I E+
Sbjct: 60 YIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIF 119
Query: 103 DRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPC-VS 161
D R AD SL+GF+L HS GGTGSG S LL +L + KK + ++P+ +S
Sbjct: 120 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS 179
Query: 162 TSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSI 221
VV+PYN++L+ N DC ++DN A I +L+I+ PS++ +N+L+S ++S+
Sbjct: 180 DVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS 239
Query: 222 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMST-TKAYHEGMTVAQITAECFE 280
T +LR+ G +N DL +L+P PR+HF +T Y+P+ + + A TV + +
Sbjct: 240 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ 299
Query: 281 PANQMVKCNP 290
P N MV
Sbjct: 300 PKNVMVSTGR 309
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 428 bits (1102), Expect = e-151
Identities = 112/307 (36%), Positives = 160/307 (52%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE +S+HVGQ G QI ++ W L EHG+ G K N A++ ++ FF + +GK
Sbjct: 2 REILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSN--AAANSNMEVFFHKVRDGK 59
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR V++DLEP VI ++I++ ++
Sbjct: 60 YVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMN 119
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
+ LQGFL+ HS GGG+GSG SL+L +L Q + KK F + PSP +S S
Sbjct: 120 VIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDS 179
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VEPYNA+L+ L N D A ++DNEA + I + KLN P+Y +LN +I+ +VSS+TA
Sbjct: 180 AVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTA 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRF G LN DL+EF TNLVP+P HF +++P+ + + E F N
Sbjct: 239 SLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDN 298
Query: 284 QMVKCNP 290
+
Sbjct: 299 FTAAIDW 305
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 422 bits (1086), Expect = e-148
Identities = 195/307 (63%), Positives = 229/307 (74%), Gaps = 37/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG + + + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR V +DLEP+VID EII+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C+ LQGFL+FHSFGGGTGSGFTSLL+ +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLISQ+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TY+P++S KAYHE ++VA+IT CFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 284 QMVKCNP 290
QMVKC+P
Sbjct: 301 QMVKCDP 307
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 416 bits (1070), Expect = e-146
Identities = 110/307 (35%), Positives = 162/307 (52%), Gaps = 39/307 (12%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + + + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSD---LQLERINVYYNEATGNK 58
Query: 80 VVPRGVMIDLEPSVID------------------------------------EIIEETLD 103
VPR +++DLEP +D E+++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC LQGF L HS GGGTGSG +LL+ ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPAN 283
LRF G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N
Sbjct: 239 CLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKN 298
Query: 284 QMVKCNP 290
M C+P
Sbjct: 299 MMAACDP 305
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 56.6 bits (136), Expect = 2e-09
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 24/172 (13%)
Query: 76 PNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSL 135
P + + ++ + + SC + + GG GSG T
Sbjct: 55 PYAEGCGKER--KKAVGYAQTYYKQIIAQIMEKFSSC---DIVIFVATMAGGAGSGITPP 109
Query: 136 LLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAV-----LSTHSTLHNVDCAFMMDNE 190
+L +Q + K + P + + E NA+ + + +++DN
Sbjct: 110 ILGLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNN 167
Query: 191 ATYDICQRKLNIERPSYNNLNRLISQVVSSITASLRFDGALNVDLTEFQTNL 242
R +++N+ + + + VD E L
Sbjct: 168 K------------REKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 7e-06
Identities = 54/332 (16%), Positives = 92/332 (27%), Gaps = 123/332 (37%)
Query: 2 TPPPNLVRCFTVSFSVAQRECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRK------ 55
TP + + +S + I V +Q+ A + + G P +R
Sbjct: 225 TPDKDYLLSIPISCPL-----IGV------IQL--AHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 56 -CEENLLPASDPSLGT----FFDETPN--------G----KVVPRGVMIDLEPSVIDEII 98
+ L+ A + FF G + P L PS++++ +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSILEDSL 328
Query: 99 EETLDRFRRLADSCSSLQGFLLFHSFGGGTGS---GFTSLLLHQLEQEFDKK-SRLGFII 154
E G S ++L Q++ +K S L
Sbjct: 329 EN------------------------NEGVPSPMLSISNLTQEQVQDYVNKTNSHLP--- 361
Query: 155 YPSPCVSTSVV-EPYNAVLSTH--------STLHNVDCAFMMD-NEATYDICQRK----- 199
V S+V N V+S TL +D + + +RK
Sbjct: 362 -AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSN 418
Query: 200 --LNIERP---SYNN------LNRLISQVVSSITASLR------FDGALNVDLTEFQTNL 242
L + P L+ VS ++ FDG+ DL ++
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS---DLRVLSGSI 475
Query: 243 VP--------YPRIHFPLTTYSPIMSTTKAYH 266
P + + TT KA H
Sbjct: 476 SERIVDCIIRLP-VKWETTT------QFKATH 500
Score = 37.7 bits (87), Expect = 0.004
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 72 FDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFH--SFGGGTG 129
+D T +G + R + + ++D II + + ++ H FG G
Sbjct: 460 YD-TFDGSDL-RVLSGSISERIVDCIIRLPVK-WETTTQFKAT-------HILDFGPGGA 509
Query: 130 SGFTSLLLHQLE 141
SG L +
Sbjct: 510 SGLGVLTHRNKD 521
Score = 32.3 bits (73), Expect = 0.22
Identities = 55/293 (18%), Positives = 90/293 (30%), Gaps = 98/293 (33%)
Query: 61 LPASDPSLGTFFDETPNGKV--VPR--G-VMIDLEPSVI---DEIIEETLDRFRRLADSC 112
LP P+ G D+ P V + G V +EPS + D+++ L F
Sbjct: 41 LPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN----- 93
Query: 113 SSLQGFLLF---HSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFII--Y---------PSP 158
+L H+ + LL + + K +I Y P
Sbjct: 94 ----CYLEGNDIHA--------LAAKLLQENDTTLVKTKE---LIKNYITARIMAKRPFD 138
Query: 159 CVSTSVVEPYNAVLSTHSTLH-------NVDCAFMMDNE-----ATYDICQRKLNIERPS 206
S S + + AV ++ L N D F E TY + L I+ S
Sbjct: 139 KKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYF---EELRDLYQTYHVLVGDL-IKF-S 191
Query: 207 YNNLNRLISQVVSSITASLRFDGALNVD--LTE---------FQTNLVPYPRI------H 249
L+ LI + A F LN+ L + + P I H
Sbjct: 192 AETLSELIRTTLD---AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 250 FPLTT----YSP-----IMSTTKAYHEGMTVAQITAEC------FEPANQMVK 287
+ +T ++P + + +G+ A AE F + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Score = 31.6 bits (71), Expect = 0.40
Identities = 34/181 (18%), Positives = 51/181 (28%), Gaps = 66/181 (36%)
Query: 111 SCSSLQGFLLFHSFGGGTGSGFTSLL----LH----QLEQEFDKKSRLGFIIYPSPCVST 162
S + L H GS LL QL+++F+K
Sbjct: 2 DAYSTRPLTLSH------GSLEHVLLVPTASFFIASQLQEQFNK---------------- 39
Query: 163 SVVEPYNAVLSTHSTLHNVDCAFMMDNE--ATYDICQRKLNIERPSYNNLNRLISQVVSS 220
L F D+E ++ + L Y +S +V
Sbjct: 40 --------------ILPEPTEGFAADDEPTTPAELVGKFL-----GY------VSSLVEP 74
Query: 221 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTT--------KAYHEGMTVA 272
+FD LN+ LTEF+ + IH TT K Y +A
Sbjct: 75 SKVG-QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 273 Q 273
+
Sbjct: 134 K 134
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 42.6 bits (99), Expect = 1e-04
Identities = 35/255 (13%), Positives = 63/255 (24%), Gaps = 49/255 (19%)
Query: 27 VGQAGVQIGNACWELYCLEHGIGPDGVRKCEENL--------------LPASD----PSL 68
GQ G + + C L + D L
Sbjct: 50 AGQKGNKEADLFAGY-------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGL 102
Query: 69 GTFFDETPNGKVVPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGT 128
+ +D++ +E +F + FL+ GGG
Sbjct: 103 KGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGE-VIVDQFLICLGAGGGV 161
Query: 129 GSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHN-------- 180
G+G+ SL+L + ++F I PS + +LS
Sbjct: 162 GTGWGSLVLQLIREQFFPCPVSMLISLPSG--DPDEINNALVLLSEIDEFMREQDRLFGN 219
Query: 181 -----VDCAFMMDNEATYDI------CQRKLNIERPSYNNLNRLISQVVSSITASLRFDG 229
+ + DN I + N N + + I G
Sbjct: 220 SDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYG 279
Query: 230 A--LNVDLTEFQTNL 242
+ + D ++ L
Sbjct: 280 SDNVTYDPSDLIKLL 294
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 35.4 bits (81), Expect = 0.018
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 13/159 (8%)
Query: 91 PSVIDEIIEETLDRFRRLADSCSSLQGFLLFH---SFGGGTGSGFTSLLLHQLEQEFDKK 147
P V +E + + + GGGTG+G + L E D
Sbjct: 87 PQVGEEAFVKHETKIFEAVKQ--EFEDRDFIWITCGLGGGTGTGALLKAIEML-YEHDYN 143
Query: 148 SRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHN-VDCAFMMDNEATYDICQRKLNIE--R 204
+ P + V+E + + + + ++DN Y + +
Sbjct: 144 F-GLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALAN 202
Query: 205 PSYNNLNRLISQVVSSI---TASLRFDGALNVDLTEFQT 240
+ N+ I+ + I T+S + D +EF
Sbjct: 203 EYTSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQ 241
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 33.3 bits (75), Expect = 0.082
Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 36/211 (17%)
Query: 27 VGQAGVQIGNACWELYCLEHGIGPD--GVRKCEENLLPASDPSLGTFFDETPNGKVVPRG 84
G G+ + +G C++N++ S+ + G R
Sbjct: 10 AGGTGMNVATKL-------VDLGEAVHCFDTCDKNVV-DVHRSVNVTLTKGTRGAGGNRK 61
Query: 85 VMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEF 144
V++ L + I +D AD ++ +S GGG+GS L+ QL
Sbjct: 62 VILPL----VRPQIPALMDTIP-EADFY------IVCYSLGGGSGSVLGPLITGQLADRK 110
Query: 145 DKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIER 204
+E + + + T+ ++ + N+ + N +
Sbjct: 111 ----------ASFVSFVVGAMESTDNLGNDIDTMKTLEA--IAVNKHLPIVVNYVPNTQG 158
Query: 205 PSYNNLNRLISQVVSSITASLRFDGALNVDL 235
SY ++N ++ I + + L
Sbjct: 159 RSYESIND---EIAEKIRKVVLLVNQNHGRL 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.77
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 53 VRKCEENL-L--PASDPSLG 69
++K + +L L S P+L
Sbjct: 22 LKKLQASLKLYADDSAPALA 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.5
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 54/146 (36%)
Query: 88 DLEPSVIDEII-------------EETLDRFRRLADSCSSLQGFLLF--------HSFGG 126
DL P +D+ E + FR + FL F H
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTA 513
Query: 127 GTGSGFTSLLLHQLEQ----------EFDK--KSRLGFIIYPSPCVSTSVVEPYNAVLST 174
SG L QL+ ++++ + L F+ N + S
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE----------NLICSK 563
Query: 175 HSTLHNVDCAFMMDNEATYDICQRKL 200
++ L + A M ++EA ++ +++
Sbjct: 564 YTDL--LRIALMAEDEAIFEEAHKQV 587
>3s0a_A OBP14; all helical protein, unknown odorant molecules, antennae, TR
protein; 1.15A {Apis mellifera} PDB: 3rzs_A 3s0b_A*
3s0d_A* 3s0e_A* 3s0f_A 3s0g_A
Length = 119
Score = 27.0 bits (59), Expect = 3.5
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 19/94 (20%)
Query: 33 QIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFD--------ETPNGKVVPRG 84
+ C E GI E + D + + + N P+G
Sbjct: 12 TEQSVCKT----ETGIDQQKANDVIEGNIDVEDKKVQLYCECILKNFNILDKNNVFKPQG 67
Query: 85 VMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGF 118
+ +E + + +++ + CS++
Sbjct: 68 IKAVMELLIDENSVKQLVSD-------CSTISEE 94
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 28.0 bits (63), Expect = 4.1
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 102 LDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLL 136
++ F LA + +L G L G G + +++L
Sbjct: 317 MEPFPFLAGTAGALVGGLQN--IGSGVLASLSAML 349
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 27.0 bits (59), Expect = 7.0
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 42 YCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGKVVPRGV------------MIDL 89
+ V + L+ D + + ++V + V ++
Sbjct: 224 IVPLYFAAERDVIEKNGTLIMIDDERILEHLTDEEKSRIVKKKVRFRTLGCYPLTGAVES 283
Query: 90 EPSVIDEIIEETL 102
E + + +II+E L
Sbjct: 284 EATSLTDIIQEML 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,394,102
Number of extensions: 254590
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 24
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)