RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9165
(290 letters)
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 271 bits (695), Expect = 2e-92
Identities = 143/245 (58%), Positives = 171/245 (69%), Gaps = 37/245 (15%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RECIS+HVGQAGVQIGNACWELYCLEHGI PDG ++ + D S TFF ET GK
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI-GGGDDSFNTFFSETGAGK 60
Query: 80 VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
VPR V +DLEP+VIDE+ I+ LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R R+LAD C+ LQGF +FHSFGGGTGSGFTSLL+ +L ++ KKS+L F IYP+P VST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYN++L+TH+TL + DCAFM+DNEA YDIC+R L+IERP+Y NLNRLI Q+VSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 224 SLRFD 228
SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 268 bits (686), Expect = 4e-91
Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
RE + + GQ G QIG WE+ EHGI P G + +L + +++E K
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL---QLERINVYYNEAAGNK 58
Query: 80 VVPRGVMIDLEPSVIDEI------------------------------------IEETLD 103
VPR +++DLEP +D + ++ LD
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 104 RFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTS 163
R+ ++SC LQGF L HS GGGTGSG +LL+ ++ +E+ + F + PSP VS +
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178
Query: 164 VVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITA 223
VVEPYNA LS H + N D + +DNEA YDIC R L + P+Y +LN L+S +S +T
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238
Query: 224 SLRF 227
LRF
Sbjct: 239 CLRF 242
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 263 bits (674), Expect = 3e-89
Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 35/243 (14%)
Query: 20 RECISVHVGQAGVQIGNACWELYCLEHGIGPDGVRKCEENLLPASDPSLGTFFDETPNGK 79
I V +GQAG QI + W+ CLEHGI P + + S + E+ +G
Sbjct: 2 NNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSGS 61
Query: 80 VVPRGVMIDLEPSVID-----------------------------------EIIEETLDR 104
VPR +M+DLEPSVID E++ E + R
Sbjct: 62 YVPRAIMVDLEPSVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSR 121
Query: 105 FRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRLGFIIYPSPCVSTSV 164
D C ++ G ++ H+ GGGTGSGF +LL+ L++++ + L + PSP VS+ V
Sbjct: 122 LDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVV 181
Query: 165 VEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNLNRLISQVVSSITAS 224
EPYN V + ++ + D + DNEA +D+ RK NIE P+ ++LN LI++ ++ ITAS
Sbjct: 182 TEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITAS 241
Query: 225 LRF 227
+RF
Sbjct: 242 MRF 244
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 101 bits (253), Expect = 7e-27
Identities = 48/62 (77%), Positives = 55/62 (88%)
Query: 229 GALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKC 288
GALNVDLTEFQTNLVPYPR HFPL TY+P++S KAYHE ++VA+IT CFEPANQMVKC
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 289 NP 290
+P
Sbjct: 61 DP 62
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 98.5 bits (245), Expect = 1e-25
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 229 GALNVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKC 288
G LN DL + N+VP+PR+HF + ++P+ S + +TV ++T + F+ N M C
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 289 NP 290
+P
Sbjct: 61 DP 62
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 90.0 bits (223), Expect = 1e-22
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 232 NVDLTEFQTNLVPYPRIHFPLTTYSPIMSTTKAYHEGMTVAQITAECFEPANQMVKCNP 290
+ L E TNLVP P +HF + ++P+ ++ E + + ++ F+ + C+P
Sbjct: 1 EISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSP 59
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 38.0 bits (88), Expect = 5e-04
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 81 VPRGVMIDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQL 140
+ RG+ P + ++ E+ ++ R + + FGGGTG+G S ++ ++
Sbjct: 54 ITRGLGAGGRPEIGEQAALESEEKIREVLQDT---HMVFITAGFGGGTGTGA-SPVIAKI 109
Query: 141 EQEFDKKSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKL 200
+E + I +P A+ +VD + N + R +
Sbjct: 110 AKEMGILT---VAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDV 166
Query: 201 NIERPSYNNLNRLISQVVSSIT 222
I+ ++ + + Q V I+
Sbjct: 167 KIKD-AFLKADETLHQGVKGIS 187
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 37.9 bits (88), Expect = 5e-04
Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 8/136 (5%)
Query: 87 IDLEPSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDK 146
P V + E +R + + + GGGTG+G + ++ ++ +E
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADM---VFITTGMGGGTGTGA-APIIAEVAKEMGI 116
Query: 147 KSRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPS 206
L + P A + +VD + NE I + ++ +
Sbjct: 117 ---LTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-A 172
Query: 207 YNNLNRLISQVVSSIT 222
+ + +++ V I+
Sbjct: 173 FAKADDVLAGAVRGIS 188
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 34.1 bits (78), Expect = 0.012
Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 91 PSVIDEIIEETLDRFRRLADSCSSLQGFLLFHSFGGGTGSGFTSLLLHQLEQEFDKKSRL 150
P + +E +E+ + + + GGGTG+G + ++ ++ ++ + +
Sbjct: 79 PKIGEEAAKESAEEIKAAIQDS---DMVFITCGLGGGTGTGS-APVVAEISKKIGALT-V 133
Query: 151 GFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMDNEATYDICQRKLNIERPSYNNL 210
+ P ++ NA+ + D ++ NE ++I ++
Sbjct: 134 AVVTLPFVMEGKVRMK--NAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKL--AFKVA 189
Query: 211 NRLISQVVSSIT 222
+ ++ V +
Sbjct: 190 DEVLINAVKGLV 201
>d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation
protein DsrF {Chromatium vinosum [TaxId: 1049]}
Length = 132
Score = 25.7 bits (56), Expect = 3.7
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 148 SRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMD 188
+ ++ +P + E VL + +V F+ D
Sbjct: 2 KKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 42
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.9 bits (57), Expect = 4.9
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 46 HGIGPDGVRKCEENLLPASDPSLGT--FFDETPNGKVVPRGVMIDLE----------PSV 93
+G E ++ P + + + V + E P V
Sbjct: 29 QVVGERNFTLLEVSIRKGKQPLVMDRVYIGKGERDVVYKIKRRLRYEDLTPAAKTELPYV 88
Query: 94 IDEIIEETLDRF 105
I+ II++ ++
Sbjct: 89 IEHIIKQDEKKY 100
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein
C, TusC {Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.3 bits (55), Expect = 5.8
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 148 SRLGFIIYPSPCVSTSVVEPYNAVLSTHSTLHNVDCAFMMD 188
R+ F+ +P + + E +A+L+T + ++ F+ D
Sbjct: 2 KRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,075,970
Number of extensions: 49023
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 19
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)