Query psy9166
Match_columns 77
No_of_seqs 146 out of 1388
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01105 galF UTP-glucose-1-p 99.8 2.5E-20 5.4E-25 121.4 8.8 67 9-75 2-68 (297)
2 cd04197 eIF-2B_epsilon_N The N 99.8 6.5E-20 1.4E-24 114.2 8.4 66 11-76 1-66 (217)
3 PRK10122 GalU regulator GalF; 99.8 1.2E-19 2.7E-24 118.0 8.8 67 9-75 2-68 (297)
4 PRK05293 glgC glucose-1-phosph 99.8 9E-20 2E-24 121.1 7.4 68 8-75 1-69 (380)
5 PRK00844 glgC glucose-1-phosph 99.8 1.3E-19 2.8E-24 121.7 7.8 69 7-75 2-71 (407)
6 COG1208 GCD1 Nucleoside-diphos 99.8 3.6E-19 7.7E-24 118.4 7.8 67 10-76 1-67 (358)
7 TIGR01099 galU UTP-glucose-1-p 99.8 6E-19 1.3E-23 112.0 8.4 65 11-75 1-65 (260)
8 cd02541 UGPase_prokaryotic Pro 99.8 6.2E-19 1.3E-23 112.3 8.3 65 11-75 1-65 (267)
9 cd06422 NTP_transferase_like_1 99.8 7.7E-19 1.7E-23 109.2 8.3 65 12-76 1-65 (221)
10 cd02508 ADP_Glucose_PP ADP-glu 99.8 5.2E-19 1.1E-23 108.9 6.8 63 13-75 1-64 (200)
11 cd06425 M1P_guanylylT_B_like_N 99.8 9.4E-19 2E-23 109.7 7.7 65 11-75 1-65 (233)
12 PF00483 NTP_transferase: Nucl 99.8 1.7E-18 3.7E-23 108.7 8.2 65 12-76 1-67 (248)
13 cd04189 G1P_TT_long G1P_TT_lon 99.8 3E-18 6.6E-23 107.2 8.1 66 11-76 1-66 (236)
14 PRK02862 glgC glucose-1-phosph 99.8 1.3E-18 2.8E-23 117.6 6.9 67 9-75 2-69 (429)
15 TIGR02623 G1P_cyt_trans glucos 99.8 3.1E-18 6.8E-23 109.0 8.2 64 12-75 1-64 (254)
16 cd02538 G1P_TT_short G1P_TT_sh 99.8 3.4E-18 7.3E-23 107.6 8.2 65 11-75 1-66 (240)
17 cd04198 eIF-2B_gamma_N The N-t 99.8 3.8E-18 8.3E-23 106.2 8.0 65 11-75 1-66 (214)
18 cd02524 G1P_cytidylyltransfera 99.8 3.6E-18 7.9E-23 108.3 7.9 64 13-76 1-64 (253)
19 PRK00725 glgC glucose-1-phosph 99.8 2.4E-18 5.2E-23 116.2 7.4 67 9-75 14-81 (425)
20 cd02507 eIF-2B_gamma_N_like Th 99.8 5.5E-18 1.2E-22 105.7 8.5 65 11-75 1-65 (216)
21 PRK15480 glucose-1-phosphate t 99.8 5.2E-18 1.1E-22 110.3 8.7 67 9-75 2-69 (292)
22 cd06426 NTP_transferase_like_2 99.8 2.8E-18 6.1E-23 106.3 7.1 63 13-75 1-63 (220)
23 COG4750 LicC CTP:phosphocholin 99.8 1.4E-18 3E-23 107.0 5.2 60 11-70 1-60 (231)
24 PLN02241 glucose-1-phosphate a 99.8 2.5E-18 5.4E-23 116.4 6.8 69 8-76 1-70 (436)
25 cd06915 NTP_transferase_WcbM_l 99.7 5.4E-18 1.2E-22 104.6 7.2 63 13-75 1-63 (223)
26 cd02523 PC_cytidylyltransferas 99.7 5.9E-18 1.3E-22 105.6 7.5 64 13-76 1-64 (229)
27 TIGR02092 glgD glucose-1-phosp 99.7 1E-18 2.3E-23 115.7 4.0 66 10-75 2-69 (369)
28 cd04181 NTP_transferase NTP_tr 99.7 6.6E-18 1.4E-22 104.0 7.3 64 13-76 1-64 (217)
29 PRK13389 UTP--glucose-1-phosph 99.7 1.9E-17 4.1E-22 108.0 8.6 66 10-75 8-73 (302)
30 cd06428 M1P_guanylylT_A_like_N 99.7 1.4E-17 2.9E-22 105.9 7.6 63 13-75 1-66 (257)
31 TIGR01207 rmlA glucose-1-phosp 99.7 2.8E-17 6.1E-22 106.6 7.9 64 12-75 1-65 (286)
32 TIGR02091 glgC glucose-1-phosp 99.7 5.2E-18 1.1E-22 111.9 4.3 63 13-75 1-64 (361)
33 TIGR01208 rmlA_long glucose-1- 99.7 6.1E-17 1.3E-21 106.8 7.9 64 12-75 1-65 (353)
34 COG1209 RfbA dTDP-glucose pyro 99.7 3.6E-17 7.7E-22 105.0 6.2 65 11-75 1-66 (286)
35 COG1213 Predicted sugar nucleo 99.7 9.5E-17 2.1E-21 101.2 7.2 65 9-76 2-67 (239)
36 COG1210 GalU UDP-glucose pyrop 99.7 9.6E-17 2.1E-21 103.2 6.4 69 8-76 2-70 (291)
37 cd04183 GT2_BcE_like GT2_BcbE_ 99.6 2.8E-16 6.2E-21 98.1 5.6 53 13-65 1-53 (231)
38 KOG1322|consensus 99.6 6E-16 1.3E-20 101.5 7.3 67 9-75 8-74 (371)
39 cd02509 GDP-M1P_Guanylyltransf 99.6 8.4E-16 1.8E-20 99.0 7.1 65 11-75 1-69 (274)
40 cd02540 GT2_GlmU_N_bac N-termi 99.6 8.9E-16 1.9E-20 95.4 7.0 60 13-75 1-60 (229)
41 TIGR00454 conserved hypothetic 99.6 3.2E-15 6.9E-20 91.7 8.2 61 11-75 1-61 (183)
42 PF12804 NTP_transf_3: MobA-li 99.6 2.4E-15 5.2E-20 89.3 6.7 55 13-74 1-55 (160)
43 PRK14356 glmU bifunctional N-a 99.6 2.8E-15 6E-20 101.5 7.7 66 7-75 2-67 (456)
44 PRK14358 glmU bifunctional N-a 99.6 5.4E-15 1.2E-19 101.3 8.4 64 9-75 6-69 (481)
45 TIGR01173 glmU UDP-N-acetylglu 99.6 4.6E-15 1E-19 100.0 7.5 63 11-76 1-63 (451)
46 PRK14353 glmU bifunctional N-a 99.6 5.9E-15 1.3E-19 99.7 7.9 65 8-75 3-67 (446)
47 PRK14354 glmU bifunctional N-a 99.6 6.6E-15 1.4E-19 99.6 7.7 64 9-75 1-64 (458)
48 PRK14359 glmU bifunctional N-a 99.6 1E-14 2.2E-19 98.0 7.7 64 9-76 1-64 (430)
49 PRK09451 glmU bifunctional N-a 99.6 1E-14 2.2E-19 99.0 7.6 65 8-75 3-67 (456)
50 COG1207 GlmU N-acetylglucosami 99.6 1.3E-14 2.7E-19 97.9 7.4 64 10-76 2-65 (460)
51 PRK14355 glmU bifunctional N-a 99.6 1.6E-14 3.4E-19 98.2 8.0 65 9-76 2-66 (459)
52 PRK14352 glmU bifunctional N-a 99.6 1.6E-14 3.5E-19 98.7 8.0 64 9-75 3-66 (482)
53 PF01128 IspD: 2-C-methyl-D-er 99.6 2E-14 4.3E-19 90.6 7.5 60 11-73 1-62 (221)
54 PLN02728 2-C-methyl-D-erythrit 99.5 3.4E-14 7.3E-19 91.0 8.1 56 9-67 23-79 (252)
55 cd04182 GT_2_like_f GT_2_like_ 99.5 3.3E-14 7.1E-19 85.6 7.7 58 11-73 1-58 (186)
56 PRK14360 glmU bifunctional N-a 99.5 3E-14 6.5E-19 96.3 7.7 62 11-75 2-63 (450)
57 TIGR01479 GMP_PMI mannose-1-ph 99.5 3.6E-14 7.9E-19 97.2 6.7 56 11-66 1-58 (468)
58 PRK00155 ispD 2-C-methyl-D-ery 99.5 8.4E-14 1.8E-18 87.0 7.8 59 9-70 2-62 (227)
59 TIGR03310 matur_ygfJ molybdenu 99.5 7.6E-14 1.6E-18 84.6 7.0 55 13-72 2-56 (188)
60 COG1211 IspD 4-diphosphocytidy 99.5 8.4E-14 1.8E-18 88.1 7.4 63 8-73 2-66 (230)
61 PRK00317 mobA molybdopterin-gu 99.5 1E-13 2.2E-18 84.9 7.6 56 9-69 2-57 (193)
62 COG0448 GlgC ADP-glucose pyrop 99.5 9.3E-15 2E-19 97.7 3.2 69 8-76 3-72 (393)
63 TIGR00453 ispD 2-C-methyl-D-er 99.5 1.4E-13 3.1E-18 85.3 7.1 59 12-73 1-61 (217)
64 PRK13385 2-C-methyl-D-erythrit 99.5 1.9E-13 4.2E-18 85.8 7.5 54 10-66 2-56 (230)
65 PRK09382 ispDF bifunctional 2- 99.5 1.9E-13 4.1E-18 91.7 7.9 60 8-70 3-63 (378)
66 cd02516 CDP-ME_synthetase CDP- 99.5 2.5E-13 5.5E-18 84.0 7.4 57 12-71 2-59 (218)
67 KOG1462|consensus 99.5 1.8E-14 3.9E-19 96.1 2.4 68 7-74 6-74 (433)
68 cd02503 MobA MobA catalyzes th 99.5 1.9E-13 4.2E-18 82.6 6.5 52 11-68 1-52 (181)
69 TIGR03202 pucB xanthine dehydr 99.5 1.9E-13 4.1E-18 83.5 6.4 52 11-67 1-52 (190)
70 PRK14357 glmU bifunctional N-a 99.5 3.1E-13 6.7E-18 91.4 7.6 61 11-75 1-61 (448)
71 COG0836 {ManC} Mannose-1-phosp 99.5 3E-13 6.5E-18 88.7 6.9 64 11-74 2-69 (333)
72 PRK02726 molybdopterin-guanine 99.5 4.4E-13 9.5E-18 82.9 7.3 55 5-65 2-56 (200)
73 PRK05450 3-deoxy-manno-octulos 99.4 6.2E-13 1.3E-17 83.7 7.5 57 10-74 2-58 (245)
74 COG2266 GTP:adenosylcobinamide 99.4 5.6E-13 1.2E-17 81.0 6.2 61 11-76 1-61 (177)
75 COG2068 Uncharacterized MobA-r 99.4 9.2E-13 2E-17 81.7 7.1 54 8-66 3-56 (199)
76 PRK15460 cpsB mannose-1-phosph 99.4 6.4E-13 1.4E-17 91.4 7.0 65 10-74 5-72 (478)
77 PRK13368 3-deoxy-manno-octulos 99.4 1E-12 2.2E-17 82.5 7.3 58 10-75 2-60 (238)
78 cd02517 CMP-KDO-Synthetase CMP 99.4 1.1E-12 2.3E-17 82.4 7.3 57 11-75 2-59 (239)
79 PRK00560 molybdopterin-guanine 99.4 7.4E-13 1.6E-17 81.7 6.3 53 7-65 5-58 (196)
80 TIGR02665 molyb_mobA molybdopt 99.4 1.5E-12 3.2E-17 79.0 7.3 53 11-68 1-53 (186)
81 KOG1461|consensus 99.4 2.2E-12 4.9E-17 90.1 7.6 69 8-76 22-90 (673)
82 KOG1460|consensus 99.4 2E-12 4.3E-17 84.7 6.2 66 10-75 2-70 (407)
83 TIGR00466 kdsB 3-deoxy-D-manno 99.4 3.5E-12 7.5E-17 80.9 6.9 54 13-74 2-55 (238)
84 PRK14489 putative bifunctional 99.3 8.4E-12 1.8E-16 83.4 7.9 60 9-73 4-63 (366)
85 cd02513 CMP-NeuAc_Synthase CMP 99.3 1.1E-11 2.3E-16 76.9 7.1 50 10-65 1-51 (223)
86 PRK14490 putative bifunctional 99.3 1.1E-11 2.4E-16 82.8 7.3 53 8-66 172-224 (369)
87 cd02518 GT2_SpsF SpsF is a gly 99.3 1.3E-11 2.7E-16 77.5 7.0 56 13-74 2-60 (233)
88 PLN02917 CMP-KDO synthetase 99.3 2.7E-11 5.9E-16 79.0 7.8 61 7-75 44-105 (293)
89 PRK14500 putative bifunctional 99.2 5.4E-11 1.2E-15 79.2 6.2 52 9-66 159-210 (346)
90 COG0746 MobA Molybdopterin-gua 99.2 6.4E-11 1.4E-15 73.4 6.0 54 8-68 2-55 (192)
91 cd04180 UGPase_euk_like Eukary 99.2 2E-10 4.4E-15 74.1 7.4 63 11-76 1-74 (266)
92 TIGR03584 PseF pseudaminic aci 99.1 5.5E-10 1.2E-14 70.3 6.8 47 13-65 2-49 (222)
93 PF02348 CTP_transf_3: Cytidyl 99.0 2.2E-09 4.7E-14 66.5 7.9 48 12-65 1-49 (217)
94 PTZ00339 UDP-N-acetylglucosami 99.0 2.6E-09 5.6E-14 73.8 7.7 65 9-76 105-186 (482)
95 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 6.1E-09 1.3E-13 68.9 7.3 65 9-76 14-93 (323)
96 COG1212 KdsB CMP-2-keto-3-deox 98.9 9.7E-09 2.1E-13 65.0 6.4 59 9-75 2-60 (247)
97 COG1083 NeuA CMP-N-acetylneura 98.6 2.6E-07 5.6E-12 58.2 5.9 51 9-65 2-53 (228)
98 COG1861 SpsF Spore coat polysa 98.5 5.7E-07 1.2E-11 57.0 6.1 60 10-75 3-65 (241)
99 cd00897 UGPase_euk Eukaryotic 98.4 2.2E-06 4.8E-11 56.4 6.8 65 9-76 2-73 (300)
100 cd06424 UGGPase UGGPase cataly 98.3 2.5E-06 5.5E-11 56.5 6.2 62 12-76 2-76 (315)
101 PF01704 UDPGP: UTP--glucose-1 98.2 8.9E-06 1.9E-10 55.7 6.6 65 9-76 55-126 (420)
102 PLN02474 UTP--glucose-1-phosph 98.1 1.6E-05 3.4E-10 55.2 6.2 65 9-76 78-149 (469)
103 PLN02435 probable UDP-N-acetyl 98.0 3E-05 6.5E-10 54.1 6.4 65 9-76 115-198 (493)
104 PLN02830 UDP-sugar pyrophospho 97.9 5.7E-05 1.2E-09 54.0 7.4 65 9-76 127-207 (615)
105 COG4284 UDP-glucose pyrophosph 97.8 0.00012 2.7E-09 50.7 7.0 64 8-74 103-172 (472)
106 PRK00576 molybdopterin-guanine 97.5 0.00021 4.5E-09 43.3 4.5 36 30-66 2-39 (178)
107 KOG2388|consensus 96.1 0.018 4E-07 40.2 5.4 64 9-75 96-174 (477)
108 KOG2638|consensus 89.4 2.2 4.7E-05 30.1 6.2 65 9-76 102-173 (498)
109 TIGR03552 F420_cofC 2-phospho- 86.5 1.7 3.7E-05 26.3 4.0 25 41-65 30-54 (195)
110 PF05060 MGAT2: N-acetylglucos 80.2 7.1 0.00015 26.8 5.3 55 21-75 22-80 (356)
111 PF00583 Acetyltransf_1: Acety 78.3 4.8 0.0001 20.3 3.3 36 40-75 43-78 (83)
112 PF13704 Glyco_tranf_2_4: Glyc 77.4 5.6 0.00012 21.2 3.6 34 41-74 4-37 (97)
113 cd00761 Glyco_tranf_GTA_type G 76.6 5.4 0.00012 21.7 3.4 32 41-72 9-42 (156)
114 PF00056 Ldh_1_N: lactate/mala 73.0 7.1 0.00015 22.8 3.4 53 9-66 68-120 (141)
115 cd01481 vWA_collagen_alpha3-VI 70.3 20 0.00044 21.3 5.7 50 20-72 98-151 (165)
116 COG3315 O-Methyltransferase in 67.4 34 0.00074 22.8 6.1 46 10-55 93-138 (297)
117 TIGR00285 DNA-binding protein 66.6 14 0.0003 20.4 3.4 29 36-64 4-34 (87)
118 KOG2791|consensus 63.7 26 0.00057 24.4 4.9 41 35-75 122-166 (455)
119 cd03413 CbiK_C Anaerobic cobal 62.7 14 0.0003 20.6 3.1 24 39-62 39-62 (103)
120 cd03411 Ferrochelatase_N Ferro 60.9 14 0.00031 22.0 3.1 25 39-63 96-120 (159)
121 PRK05086 malate dehydrogenase; 60.8 25 0.00053 23.4 4.4 52 9-66 68-120 (312)
122 COG1246 ArgA N-acetylglutamate 60.6 16 0.00034 22.2 3.2 29 40-68 83-111 (153)
123 COG1581 Ssh10b Archaeal DNA-bi 59.9 28 0.00061 19.2 4.1 32 33-64 4-37 (91)
124 cd03409 Chelatase_Class_II Cla 59.6 16 0.00034 19.5 2.9 23 41-63 44-66 (101)
125 PF10662 PduV-EutP: Ethanolami 59.1 33 0.00071 20.5 4.4 34 43-76 107-143 (143)
126 COG3961 Pyruvate decarboxylase 58.7 22 0.00048 25.9 4.1 35 41-75 4-38 (557)
127 cd00300 LDH_like L-lactate deh 58.4 24 0.00053 23.2 4.1 51 10-65 66-116 (300)
128 PF02633 Creatininase: Creatin 58.2 15 0.00033 23.2 3.1 24 43-66 87-110 (237)
129 PTZ00325 malate dehydrogenase; 56.4 30 0.00065 23.3 4.3 55 9-68 75-129 (321)
130 PRK00923 sirohydrochlorin coba 55.7 21 0.00045 20.2 3.1 23 40-62 44-66 (126)
131 COG3981 Predicted acetyltransf 55.5 32 0.0007 21.4 4.0 34 41-74 116-149 (174)
132 cd03416 CbiX_SirB_N Sirohydroc 55.2 22 0.00049 19.1 3.1 23 40-62 42-64 (101)
133 PLN02602 lactate dehydrogenase 54.9 30 0.00065 23.6 4.2 52 9-65 104-156 (350)
134 PF02641 DUF190: Uncharacteriz 54.6 36 0.00077 18.8 4.1 27 37-63 15-41 (101)
135 cd01025 TOPRIM_recR TOPRIM_rec 52.6 43 0.00093 19.2 4.4 33 43-75 44-78 (112)
136 cd05293 LDH_1 A subgroup of L- 52.6 32 0.00069 23.0 3.9 51 9-64 70-120 (312)
137 cd05291 HicDH_like L-2-hydroxy 52.0 36 0.00078 22.4 4.1 51 9-64 67-117 (306)
138 TIGR02990 ectoine_eutA ectoine 51.9 44 0.00095 21.5 4.4 33 43-75 107-142 (239)
139 cd03415 CbiX_CbiC Archaeal sir 51.4 34 0.00073 19.8 3.5 23 40-62 42-64 (125)
140 PHA01807 hypothetical protein 51.2 38 0.00083 20.2 3.8 34 40-73 99-132 (153)
141 TIGR01772 MDH_euk_gproteo mala 51.1 64 0.0014 21.6 5.2 52 9-65 66-118 (312)
142 PF04609 MCR_C: Methyl-coenzym 50.6 60 0.0013 21.5 4.8 53 10-64 102-163 (268)
143 TIGR01771 L-LDH-NAD L-lactate 50.3 39 0.00084 22.4 4.0 52 9-65 63-114 (299)
144 PRK00066 ldh L-lactate dehydro 49.3 45 0.00098 22.2 4.3 51 9-64 72-122 (315)
145 cd07038 TPP_PYR_PDC_IPDC_like 48.8 48 0.001 19.7 4.0 24 47-70 3-26 (162)
146 PF02776 TPP_enzyme_N: Thiamin 46.8 61 0.0013 19.3 4.3 32 44-75 4-35 (172)
147 cd05292 LDH_2 A subgroup of L- 46.1 54 0.0012 21.7 4.2 49 11-64 68-116 (308)
148 PLN00135 malate dehydrogenase 46.1 64 0.0014 21.6 4.6 51 9-64 57-108 (309)
149 cd07039 TPP_PYR_POX Pyrimidine 45.9 64 0.0014 19.2 4.3 29 45-73 4-32 (164)
150 PLN02573 pyruvate decarboxylas 45.6 74 0.0016 23.0 5.1 45 30-74 3-49 (578)
151 TIGR00067 glut_race glutamate 45.5 69 0.0015 20.6 4.6 32 35-66 34-72 (251)
152 COG1155 NtpA Archaeal/vacuolar 44.9 27 0.0006 25.5 2.8 35 39-74 235-269 (588)
153 PF10673 DUF2487: Protein of u 44.7 46 0.001 19.9 3.4 22 44-65 73-94 (142)
154 TIGR00615 recR recombination p 44.4 71 0.0015 20.2 4.4 32 44-75 123-156 (195)
155 TIGR01042 V-ATPase_V1_A V-type 43.5 29 0.00062 25.6 2.8 36 40-76 238-273 (591)
156 PRK00865 glutamate racemase; P 43.2 79 0.0017 20.4 4.6 32 35-66 41-78 (261)
157 TIGR01763 MalateDH_bact malate 42.8 64 0.0014 21.4 4.2 52 9-65 68-120 (305)
158 COG4917 EutP Ethanolamine util 42.7 63 0.0014 19.4 3.7 66 10-75 66-142 (148)
159 cd03414 CbiX_SirB_C Sirohydroc 42.6 45 0.00097 18.4 3.1 23 40-62 43-65 (117)
160 PLN02757 sirohydrochlorine fer 42.3 43 0.00094 20.0 3.1 23 40-62 56-78 (154)
161 PRK13844 recombination protein 42.2 82 0.0018 20.0 4.4 32 44-75 127-160 (200)
162 PF13528 Glyco_trans_1_3: Glyc 41.7 38 0.00082 21.8 3.0 66 11-76 251-316 (318)
163 TIGR01575 rimI ribosomal-prote 41.4 58 0.0013 17.5 3.6 29 40-68 72-100 (131)
164 PRK14719 bifunctional RNAse/5- 40.7 81 0.0018 21.7 4.5 49 12-63 24-74 (360)
165 TIGR02382 wecD_rffC TDP-D-fuco 40.5 65 0.0014 19.4 3.7 33 40-72 141-173 (191)
166 PRK10975 TDP-fucosamine acetyl 40.3 72 0.0016 19.1 3.9 33 41-73 145-177 (194)
167 PF00762 Ferrochelatase: Ferro 40.0 39 0.00085 22.6 2.9 25 39-63 97-121 (316)
168 PF13727 CoA_binding_3: CoA-bi 39.5 41 0.0009 19.4 2.7 36 39-74 122-161 (175)
169 PRK09822 lipopolysaccharide co 39.1 1.1E+02 0.0024 20.2 4.6 46 12-63 23-68 (269)
170 cd00419 Ferrochelatase_C Ferro 39.0 51 0.0011 19.2 3.0 24 41-64 76-99 (135)
171 TIGR02803 ExbD_1 TonB system t 39.0 64 0.0014 18.2 3.4 22 43-64 100-121 (122)
172 PLN02470 acetolactate synthase 38.6 1.3E+02 0.0028 21.8 5.4 34 41-74 13-46 (585)
173 PLN02706 glucosamine 6-phospha 38.4 62 0.0013 18.3 3.3 31 41-71 104-134 (150)
174 cd01337 MDH_glyoxysomal_mitoch 38.4 1E+02 0.0022 20.7 4.6 53 8-65 66-119 (310)
175 PRK03624 putative acetyltransf 38.1 69 0.0015 17.3 3.7 28 41-68 87-114 (140)
176 PRK10146 aminoalkylphosphonic 37.8 74 0.0016 17.6 3.7 27 40-66 94-120 (144)
177 TIGR01485 SPP_plant-cyano sucr 37.7 89 0.0019 19.6 4.2 33 42-75 24-56 (249)
178 PRK12435 ferrochelatase; Provi 37.4 50 0.0011 22.1 3.1 25 39-63 87-111 (311)
179 TIGR01484 HAD-SF-IIB HAD-super 36.9 95 0.0021 18.6 4.6 32 43-75 21-52 (204)
180 PF13380 CoA_binding_2: CoA bi 36.4 82 0.0018 17.7 3.6 35 42-76 66-100 (116)
181 TIGR00027 mthyl_TIGR00027 meth 36.3 1.2E+02 0.0026 19.6 5.9 43 11-53 83-125 (260)
182 TIGR00109 hemH ferrochelatase. 36.2 53 0.0012 22.0 3.1 25 39-63 101-125 (322)
183 PRK00035 hemH ferrochelatase; 36.1 54 0.0012 21.8 3.1 25 39-63 102-126 (333)
184 PRK07092 benzoylformate decarb 35.7 99 0.0021 21.9 4.5 43 32-74 2-45 (530)
185 cd05290 LDH_3 A subgroup of L- 35.6 1.2E+02 0.0027 20.2 4.7 52 10-65 68-120 (307)
186 cd03412 CbiK_N Anaerobic cobal 35.6 66 0.0014 18.4 3.1 35 41-75 55-94 (127)
187 cd02169 Citrate_lyase_ligase C 35.2 72 0.0016 21.3 3.5 33 40-72 43-75 (297)
188 PF13420 Acetyltransf_4: Acety 34.7 87 0.0019 17.6 3.5 34 41-74 95-129 (155)
189 COG1993 PII-like signaling pro 34.6 56 0.0012 18.8 2.5 20 38-57 19-38 (109)
190 COG0832 UreB Urea amidohydrola 34.5 13 0.00029 21.1 0.0 28 15-43 62-89 (106)
191 PRK06223 malate dehydrogenase; 34.0 1.1E+02 0.0023 20.0 4.2 51 10-65 70-121 (307)
192 cd00407 Urease_beta Urease bet 33.9 10 0.00022 21.4 -0.5 27 15-42 62-88 (101)
193 TIGR02406 ectoine_EctA L-2,4-d 33.8 98 0.0021 18.0 3.7 30 40-69 84-113 (157)
194 PF01903 CbiX: CbiX; InterPro 33.3 19 0.00041 19.5 0.5 23 40-62 35-57 (105)
195 cd01339 LDH-like_MDH L-lactate 32.8 1.3E+02 0.0028 19.7 4.4 51 10-65 66-117 (300)
196 PF00289 CPSase_L_chain: Carba 32.7 67 0.0014 18.1 2.7 30 38-67 8-37 (110)
197 cd01338 MDH_choloroplast_like 32.4 1.4E+02 0.0031 20.0 4.6 50 10-64 78-128 (322)
198 cd00704 MDH Malate dehydrogena 32.0 1.5E+02 0.0032 20.0 4.6 50 10-64 76-126 (323)
199 PLN00106 malate dehydrogenase 31.8 1.3E+02 0.0027 20.4 4.3 51 9-64 85-135 (323)
200 cd07035 TPP_PYR_POX_like Pyrim 31.5 99 0.0022 17.8 3.5 19 47-65 3-21 (155)
201 PHA00673 acetyltransferase dom 31.5 66 0.0014 19.4 2.7 26 40-65 103-128 (154)
202 KOG0075|consensus 31.2 71 0.0015 19.7 2.8 30 34-64 68-97 (186)
203 TIGR01759 MalateDH-SF1 malate 31.0 1.7E+02 0.0036 19.7 4.8 50 10-64 79-129 (323)
204 PRK06718 precorrin-2 dehydroge 31.0 1.3E+02 0.0029 18.6 5.3 18 38-55 16-33 (202)
205 cd00650 LDH_MDH_like NAD-depen 30.9 1.4E+02 0.003 19.1 4.3 49 10-63 70-118 (263)
206 PRK13203 ureB urease subunit b 30.6 12 0.00027 21.2 -0.5 26 16-42 63-88 (102)
207 COG0777 AccD Acetyl-CoA carbox 30.4 22 0.00047 23.8 0.5 34 17-50 207-243 (294)
208 TIGR00192 urease_beta urease, 30.3 13 0.00027 21.1 -0.5 26 16-42 63-88 (101)
209 PF13911 AhpC-TSA_2: AhpC/TSA 29.5 1E+02 0.0022 16.8 3.8 28 46-74 4-31 (115)
210 PRK13412 fkp bifunctional fuco 29.5 91 0.002 24.5 3.6 39 11-50 93-137 (974)
211 PTZ00117 malate dehydrogenase; 29.0 1.7E+02 0.0036 19.5 4.5 51 10-65 73-124 (319)
212 COG0276 HemH Protoheme ferro-l 29.0 82 0.0018 21.4 3.0 25 39-63 99-123 (320)
213 TIGR01757 Malate-DH_plant mala 28.6 1.6E+02 0.0034 20.6 4.4 51 9-64 119-170 (387)
214 cd07037 TPP_PYR_MenD Pyrimidin 28.5 1.3E+02 0.0027 18.1 3.6 17 48-64 4-20 (162)
215 TIGR00290 MJ0570_dom MJ0570-re 28.5 1.1E+02 0.0024 19.6 3.4 33 32-65 112-144 (223)
216 PRK04015 DNA/RNA-binding prote 28.4 1.1E+02 0.0025 16.9 3.6 29 35-63 6-36 (91)
217 PLN00112 malate dehydrogenase 28.3 1.5E+02 0.0033 21.1 4.4 51 9-64 175-226 (444)
218 PF09554 RE_HaeII: HaeII restr 28.3 1.1E+02 0.0023 20.8 3.4 56 12-71 211-267 (338)
219 PRK10513 sugar phosphate phosp 28.2 1.6E+02 0.0034 18.5 4.3 30 45-75 26-55 (270)
220 PRK00076 recR recombination pr 28.0 1.6E+02 0.0035 18.6 4.4 31 44-75 123-155 (196)
221 PRK13202 ureB urease subunit b 27.9 21 0.00047 20.3 0.1 26 16-42 64-89 (104)
222 COG0796 MurI Glutamate racemas 27.6 1.9E+02 0.0041 19.2 4.5 40 36-75 42-87 (269)
223 PF13793 Pribosyltran_N: N-ter 27.4 1.3E+02 0.0027 17.1 3.3 22 44-65 67-88 (116)
224 TIGR00173 menD 2-succinyl-5-en 27.3 1.4E+02 0.003 20.7 4.0 30 45-74 4-33 (432)
225 cd01994 Alpha_ANH_like_IV This 27.2 1.3E+02 0.0028 18.6 3.5 33 32-65 115-147 (194)
226 PF06180 CbiK: Cobalt chelatas 27.0 73 0.0016 20.9 2.5 26 37-62 178-203 (262)
227 PF10150 RNase_E_G: Ribonuclea 27.0 92 0.002 20.4 3.0 43 33-75 82-124 (271)
228 PTZ00330 acetyltransferase; Pr 26.9 1.1E+02 0.0024 17.0 3.1 30 41-70 101-130 (147)
229 COG0456 RimI Acetyltransferase 26.2 1.4E+02 0.0029 17.2 3.4 30 40-69 109-139 (177)
230 cd01427 HAD_like Haloacid deha 26.1 1.1E+02 0.0025 16.1 4.5 31 44-75 29-59 (139)
231 PF06007 PhnJ: Phosphonate met 26.0 21 0.00045 23.5 -0.2 46 11-56 197-243 (277)
232 PRK06457 pyruvate dehydrogenas 25.6 1.7E+02 0.0038 20.9 4.3 32 43-74 4-35 (549)
233 TIGR02801 tolR TolR protein. T 25.5 1.3E+02 0.0029 17.0 3.2 21 43-63 108-128 (129)
234 PRK13201 ureB urease subunit b 25.5 17 0.00038 21.6 -0.5 27 16-43 63-89 (136)
235 PRK07710 acetolactate synthase 25.4 1.6E+02 0.0035 21.1 4.2 34 41-74 16-49 (571)
236 TIGR01512 ATPase-IB2_Cd heavy 25.1 1.9E+02 0.004 20.8 4.4 31 43-73 366-396 (536)
237 PTZ00305 NADH:ubiquinone oxido 24.9 59 0.0013 21.9 1.8 37 21-57 56-97 (297)
238 PF01713 Smr: Smr domain; Int 24.9 1.1E+02 0.0025 15.7 3.3 24 43-66 14-37 (83)
239 PRK13695 putative NTPase; Prov 24.8 1.6E+02 0.0034 17.3 4.4 7 58-64 128-134 (174)
240 COG0547 TrpD Anthranilate phos 24.7 2E+02 0.0044 19.7 4.3 41 25-65 181-223 (338)
241 cd05294 LDH-like_MDH_nadp A la 24.7 2.2E+02 0.0047 18.9 4.6 49 10-64 72-121 (309)
242 TIGR03448 mycothiol_MshD mycot 24.5 1.5E+02 0.0034 18.8 3.7 26 41-66 245-270 (292)
243 COG2185 Sbm Methylmalonyl-CoA 24.5 87 0.0019 18.8 2.3 24 41-64 77-100 (143)
244 PRK08199 thiamine pyrophosphat 24.4 2E+02 0.0043 20.6 4.4 34 41-74 8-41 (557)
245 PRK09491 rimI ribosomal-protei 24.4 1.4E+02 0.0031 16.7 3.7 29 41-69 82-110 (146)
246 PRK11713 16S ribosomal RNA met 24.3 1.1E+02 0.0024 19.3 3.0 25 42-66 86-110 (234)
247 TIGR02720 pyruv_oxi_spxB pyruv 24.2 1.8E+02 0.0039 21.0 4.2 30 45-74 3-32 (575)
248 TIGR00124 cit_ly_ligase [citra 24.2 1.4E+02 0.003 20.3 3.4 33 41-73 69-101 (332)
249 cd05295 MDH_like Malate dehydr 24.1 1.1E+02 0.0023 21.9 3.0 52 9-65 198-252 (452)
250 COG0353 RecR Recombinational D 24.1 2E+02 0.0044 18.3 4.1 32 44-75 124-157 (198)
251 TIGR03394 indol_phenyl_DC indo 24.1 2E+02 0.0042 20.6 4.4 30 43-72 2-31 (535)
252 PRK07449 2-succinyl-5-enolpyru 24.1 1.8E+02 0.0039 20.8 4.2 34 41-74 9-42 (568)
253 TIGR03103 trio_acet_GNAT GNAT- 24.0 1.6E+02 0.0034 21.4 3.9 35 40-74 173-207 (547)
254 PRK10200 putative racemase; Pr 24.0 1.1E+02 0.0023 19.5 2.8 24 42-65 62-85 (230)
255 PRK03669 mannosyl-3-phosphogly 24.0 2E+02 0.0044 18.3 4.2 29 46-75 31-59 (271)
256 PF04452 Methyltrans_RNA: RNA 23.9 1.4E+02 0.0031 18.7 3.4 25 42-66 73-97 (225)
257 TIGR02463 MPGP_rel mannosyl-3- 23.8 1.8E+02 0.0039 17.7 4.1 29 45-74 22-50 (221)
258 PRK07586 hypothetical protein; 23.7 1.9E+02 0.0041 20.4 4.2 31 44-74 4-34 (514)
259 PRK08155 acetolactate synthase 23.7 1.8E+02 0.0038 20.9 4.1 33 42-74 14-46 (564)
260 PRK06546 pyruvate dehydrogenas 23.5 1.9E+02 0.004 21.0 4.2 32 43-74 5-36 (578)
261 PF04072 LCM: Leucine carboxyl 23.3 31 0.00068 20.8 0.3 43 12-54 81-124 (183)
262 PF14266 DUF4356: Domain of un 23.1 1.5E+02 0.0033 21.3 3.6 48 28-76 406-457 (488)
263 PRK11024 colicin uptake protei 23.1 1.6E+02 0.0035 17.0 3.3 21 44-64 119-139 (141)
264 PTZ00188 adrenodoxin reductase 22.8 1.5E+02 0.0032 21.6 3.5 22 45-66 230-251 (506)
265 PRK11269 glyoxylate carboligas 22.8 1.9E+02 0.0041 20.9 4.1 33 42-74 5-37 (591)
266 COG1179 Dinucleotide-utilizing 22.7 1.2E+02 0.0026 20.1 2.8 20 43-62 41-60 (263)
267 PRK08978 acetolactate synthase 22.7 2E+02 0.0044 20.5 4.2 31 44-74 4-34 (548)
268 PF02472 ExbD: Biopolymer tran 22.6 80 0.0017 17.6 1.9 21 44-64 108-128 (130)
269 TIGR01758 MDH_euk_cyt malate d 22.6 2.3E+02 0.0049 19.1 4.2 51 9-64 74-125 (324)
270 PRK07524 hypothetical protein; 22.6 1.9E+02 0.0042 20.5 4.1 32 43-74 4-35 (535)
271 TIGR01756 LDH_protist lactate 22.6 1.8E+02 0.0039 19.5 3.7 52 9-65 59-112 (313)
272 TIGR00118 acolac_lg acetolacta 22.5 1.9E+02 0.0042 20.6 4.1 31 44-74 4-34 (558)
273 PRK08266 hypothetical protein; 22.4 2E+02 0.0044 20.4 4.2 33 42-74 5-37 (542)
274 TIGR02804 ExbD_2 TonB system t 22.1 1.6E+02 0.0035 16.5 3.4 21 43-63 99-119 (121)
275 PF08029 HisG_C: HisG, C-termi 22.1 1.2E+02 0.0026 16.0 2.3 24 39-62 47-70 (75)
276 TIGR00515 accD acetyl-CoA carb 22.0 2.3E+02 0.0049 18.9 4.1 51 9-66 154-204 (285)
277 COG4822 CbiK Cobalamin biosynt 22.0 1.9E+02 0.0041 19.0 3.6 30 32-61 169-198 (265)
278 TIGR01662 HAD-SF-IIIA HAD-supe 21.9 1.6E+02 0.0034 16.3 4.7 23 43-66 29-51 (132)
279 PRK12474 hypothetical protein; 21.9 2.2E+02 0.0047 20.2 4.2 32 43-74 7-38 (518)
280 PRK09124 pyruvate dehydrogenas 21.9 2.5E+02 0.0054 20.2 4.5 33 42-74 4-36 (574)
281 PF02273 Acyl_transf_2: Acyl t 21.7 47 0.001 22.2 0.8 57 10-66 29-110 (294)
282 PRK10976 putative hydrolase; P 21.6 2.2E+02 0.0048 17.9 4.3 29 45-74 25-53 (266)
283 PRK15126 thiamin pyrimidine py 21.6 2.3E+02 0.0049 18.0 4.4 30 45-75 25-54 (272)
284 PRK05782 bifunctional sirohydr 21.5 2.8E+02 0.0061 19.0 5.9 24 40-63 48-71 (335)
285 cd01134 V_A-ATPase_A V/A-type 21.4 1.2E+02 0.0025 21.2 2.7 35 40-75 169-203 (369)
286 TIGR00035 asp_race aspartate r 21.4 2E+02 0.0044 18.0 3.7 23 43-65 63-85 (229)
287 PRK10530 pyridoxal phosphate ( 21.3 2.2E+02 0.0048 17.8 4.3 30 45-75 26-55 (272)
288 cd06433 GT_2_WfgS_like WfgS an 21.2 1.8E+02 0.0039 16.6 3.3 25 39-63 8-34 (202)
289 PRK08617 acetolactate synthase 21.1 2.3E+02 0.005 20.2 4.2 33 42-74 6-38 (552)
290 PRK13204 ureB urease subunit b 21.1 25 0.00054 21.4 -0.5 25 16-41 86-110 (159)
291 PRK11267 biopolymer transport 20.9 1.8E+02 0.0039 16.9 3.2 22 43-64 114-135 (141)
292 PRK08611 pyruvate oxidase; Pro 20.9 2.3E+02 0.0051 20.4 4.3 33 42-74 5-37 (576)
293 PF12163 HobA: DNA replication 20.8 2.3E+02 0.005 17.8 3.8 33 41-75 30-62 (180)
294 TIGR00046 RNA methyltransferas 20.7 1.6E+02 0.0036 18.7 3.2 25 42-66 88-112 (240)
295 PRK13198 ureB urease subunit b 20.6 26 0.00057 21.3 -0.4 26 16-42 91-116 (158)
296 KOG2882|consensus 20.6 1.7E+02 0.0037 19.9 3.3 23 44-67 43-65 (306)
297 COG0848 ExbD Biopolymer transp 20.5 1.9E+02 0.0041 17.0 3.2 22 44-65 113-134 (137)
298 PF06745 KaiC: KaiC; InterPro 20.4 2.2E+02 0.0048 17.4 4.2 37 40-76 31-69 (226)
299 cd06421 CESA_CelA_like CESA_Ce 20.4 2.1E+02 0.0045 17.1 4.9 32 43-74 16-51 (234)
300 CHL00174 accD acetyl-CoA carbo 20.2 2.9E+02 0.0062 18.7 4.9 51 9-66 167-218 (296)
301 PRK08273 thiamine pyrophosphat 20.1 2.8E+02 0.0061 20.1 4.5 32 43-74 5-36 (597)
302 TIGR03455 HisG_C-term ATP phos 20.1 1.8E+02 0.0038 16.2 4.3 26 37-62 69-94 (100)
303 PF07959 Fucokinase: L-fucokin 20.0 71 0.0015 22.3 1.5 21 17-38 1-21 (414)
304 PF04914 DltD_C: DltD C-termin 20.0 1.5E+02 0.0032 17.3 2.7 23 44-66 38-60 (130)
No 1
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.83 E-value=2.5e-20 Score=121.37 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++++||||||.|+||+|+|...||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++.
T Consensus 2 ~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~ 68 (297)
T TIGR01105 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred CceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999999999999999899998874
No 2
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.82 E-value=6.5e-20 Score=114.16 Aligned_cols=66 Identities=29% Similarity=0.524 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++|||+|||.|+|++|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+++
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~ 66 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEK 66 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhh
Confidence 479999999999999999999999999999999999999999999999999999888999999864
No 3
>PRK10122 GalU regulator GalF; Provisional
Probab=99.81 E-value=1.2e-19 Score=118.04 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.+||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 68 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFD 68 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999998884
No 4
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.81 E-value=9e-20 Score=121.06 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+|++
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 69 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIG 69 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHh
Confidence 3568999999999999999999999999999999 8999999999999999999999999999999884
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.81 E-value=1.3e-19 Score=121.72 Aligned_cols=69 Identities=28% Similarity=0.527 Sum_probs=65.5
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.++.|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+++.+|+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~ 71 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHIS 71 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHH
Confidence 45679999999999999999999999999999998 9999999999999999999999999999999985
No 6
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.6e-19 Score=118.35 Aligned_cols=67 Identities=55% Similarity=0.848 Sum_probs=63.9
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.++|||||||.|+||+|+|...||+|+|++|+|+|+|+++.|.+.|++++++++++..+.+.+++..
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d 67 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGD 67 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999999999875
No 7
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.79 E-value=6e-19 Score=111.95 Aligned_cols=65 Identities=31% Similarity=0.542 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~ 65 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFD 65 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999899988875
No 8
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.79 E-value=6.2e-19 Score=112.34 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=61.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 65 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFD 65 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhC
Confidence 47999999999999999999999999999999999999999999999999999999888888874
No 9
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.79 E-value=7.7e-19 Score=109.15 Aligned_cols=65 Identities=46% Similarity=0.751 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+++.+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999999999988999988753
No 10
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.78 E-value=5.2e-19 Score=108.88 Aligned_cols=63 Identities=38% Similarity=0.680 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++++|++++..+++.+++.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHh
Confidence 58999999999999999999999999998 9999999999999999999999999899998875
No 11
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.78 E-value=9.4e-19 Score=109.67 Aligned_cols=65 Identities=75% Similarity=1.125 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|++||+|||.|+||+|+|.+.||+++|++|+|+|+|+++++.++++++|+|++++..+.+.+++.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~ 65 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK 65 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999998888888875
No 12
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.77 E-value=1.7e-18 Score=108.73 Aligned_cols=65 Identities=46% Similarity=0.779 Sum_probs=58.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeE-EEEccCCHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREV-ILAVSYRAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~i-vvv~~~~~~~~~~~~~~ 76 (77)
++||||||.|+||+|+|...||+|+++.|+ |||+|+++++.++|++++ +|++++..+.+.++++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~ 67 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS 67 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc
Confidence 589999999999999999999999999999 999999999999999995 55555778889888864
No 13
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.76 E-value=3e-18 Score=107.16 Aligned_cols=66 Identities=47% Similarity=0.728 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|++||+|||.|+||+|+|...||++++++|+|+|+|+++++.++++++++|++++..+.+.+++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~ 66 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD 66 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc
Confidence 579999999999999999999999999999999999999999999999999999988999888753
No 14
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.76 E-value=1.3e-18 Score=117.63 Aligned_cols=67 Identities=30% Similarity=0.518 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~ 69 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHIS 69 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHh
Confidence 368999999999999999999999999999999 9999999999999999999999998899999885
No 15
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.76 E-value=3.1e-18 Score=109.05 Aligned_cols=64 Identities=36% Similarity=0.673 Sum_probs=60.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|++++..+.+.+++.
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 64 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFA 64 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999988888888875
No 16
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.76 E-value=3.4e-18 Score=107.56 Aligned_cols=65 Identities=37% Similarity=0.570 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC-HHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR-AEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~~ 75 (77)
|.+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|++++++. .+.+.+|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG 66 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999988754 577888774
No 17
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.76 E-value=3.8e-18 Score=106.17 Aligned_cols=65 Identities=40% Similarity=0.603 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCH-HHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA-EQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~-~~~~~~~~ 75 (77)
+++||+|||.|+||+|+|...||+|+|++|+|+|+|+++++.++|+++|+|+++++. +.+.+++.
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~ 66 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLR 66 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999998643 55666654
No 18
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.76 E-value=3.6e-18 Score=108.35 Aligned_cols=64 Identities=34% Similarity=0.642 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999998999988853
No 19
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.76 E-value=2.4e-18 Score=116.24 Aligned_cols=67 Identities=31% Similarity=0.527 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCee-HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKP-MLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~-li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++.|||||||.|+||+|+|...||+|+|++|+| +|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~ 81 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQ 81 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHH
Confidence 5689999999999999999999999999999997 999999999999999999999999999999885
No 20
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.76 E-value=5.5e-18 Score=105.66 Aligned_cols=65 Identities=35% Similarity=0.602 Sum_probs=61.1
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||+|||.|+||.|+|...||+++|++|+|+|+|+++++.++|+++|+|+++++.+.+.+++.
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~ 65 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLL 65 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999998888887775
No 21
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.76 E-value=5.2e-18 Score=110.30 Aligned_cols=67 Identities=31% Similarity=0.573 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc-CCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS-YRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~-~~~~~~~~~~~ 75 (77)
..+++||||||.|+||+|+|...||+|+|++|+|+|+|.++++..+|+++|+|++. +..+.+.+++.
T Consensus 2 ~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~ 69 (292)
T PRK15480 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG 69 (292)
T ss_pred CceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc
Confidence 35899999999999999999999999999999999999999999999999987765 45677888875
No 22
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.76 E-value=2.8e-18 Score=106.26 Aligned_cols=63 Identities=41% Similarity=0.736 Sum_probs=59.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|.+.||+|+|++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHC
Confidence 589999999999999999999999999999999999999999999999999998888888864
No 23
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.4e-18 Score=107.04 Aligned_cols=60 Identities=43% Similarity=0.755 Sum_probs=56.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
+.|||+|||.||||.|+|...||+|+.+.|+|+|++.++.|.++|+++|+||+++-.+++
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F 60 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF 60 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH
Confidence 368999999999999999999999999999999999999999999999999999876665
No 24
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.75 E-value=2.5e-18 Score=116.43 Aligned_cols=69 Identities=28% Similarity=0.516 Sum_probs=64.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.++++||||||.|+||+|+|..+||+++|++|+ |+|+|+++++.++|+++++|++++..+++.+|++.
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~ 70 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSR 70 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhc
Confidence 3568999999999999999999999999999996 99999999999999999999999999999999863
No 25
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.75 E-value=5.4e-18 Score=104.60 Aligned_cols=63 Identities=43% Similarity=0.699 Sum_probs=59.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||||||.|+||+|+|...||++++++|+|+|+|+++++.++++++|+|++++..+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHc
Confidence 589999999999999999999999999999999999999999999999999988888888875
No 26
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.75 E-value=5.9e-18 Score=105.65 Aligned_cols=64 Identities=48% Similarity=0.798 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+++..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999988999888753
No 27
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.74 E-value=1e-18 Score=115.69 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHH-HHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAE-QMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~-~~~~~~~ 75 (77)
++++||+|+|.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+ .+.+|+.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~ 69 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLG 69 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHh
Confidence 57899999999999999999999999999999 999999999999999999999998765 9999885
No 28
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.74 E-value=6.6e-18 Score=103.98 Aligned_cols=64 Identities=53% Similarity=0.771 Sum_probs=60.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+||+|||.|+||+|+|...||++++++|+|+|+|+++++.++++++|+|++++..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcC
Confidence 5899999999999999999999999999999999999999999999999999888888888753
No 29
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.73 E-value=1.9e-17 Score=108.04 Aligned_cols=66 Identities=29% Similarity=0.517 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
-+.+||+|||.|+||+|+|...||+++|++|+|+|+|+++++.++|+++|+|++++..+.+.+|+.
T Consensus 8 ~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~ 73 (302)
T PRK13389 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFD 73 (302)
T ss_pred ceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHc
Confidence 478999999999999999999999999999999999999999999999999999998898998885
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.73 E-value=1.4e-17 Score=105.85 Aligned_cols=63 Identities=48% Similarity=0.748 Sum_probs=59.5
Q ss_pred EEEEeCC--CCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG--~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+|||||| .|+||+|+|...||+++|++|+|+|+|+++++.+ +|+++|+|++++..+.+.+|+.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~ 66 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFIS 66 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH
Confidence 5899999 8999999999999999999999999999999999 6999999999988888988875
No 31
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.72 E-value=2.8e-17 Score=106.57 Aligned_cols=64 Identities=33% Similarity=0.583 Sum_probs=58.1
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc-CCHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS-YRAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~-~~~~~~~~~~~ 75 (77)
++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|+++|+|++. +..+.+.+++.
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg 65 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG 65 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999999987775 56677787774
No 32
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.72 E-value=5.2e-18 Score=111.94 Aligned_cols=63 Identities=30% Similarity=0.628 Sum_probs=59.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCe-eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~-~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|||||||.|+||+|+|...||+|+|++|+ |+|+|+++++.++|+++|+|++++..+.+.+++.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHH
Confidence 58999999999999999999999999999 8999999999999999999999998888888875
No 33
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.70 E-value=6.1e-17 Score=106.78 Aligned_cols=64 Identities=48% Similarity=0.744 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHHh
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDELL 75 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~~ 75 (77)
++||+|||.|+||+|+|...||+++|++|+|+|+|+++++.+++++++++++++ ..+.+.+++.
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~ 65 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVG 65 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999999998 8888988885
No 34
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=3.6e-17 Score=105.01 Aligned_cols=65 Identities=42% Similarity=0.677 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~~ 75 (77)
|++||||||.|||++|+|...||+|+|+.++|||.|.++.+..+|+++|.|++.+ +...+++++.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llG 66 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLG 66 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhc
Confidence 4689999999999999999999999999999999999999999999999888876 5677666654
No 35
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=9.5e-17 Score=101.24 Aligned_cols=65 Identities=40% Similarity=0.706 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEc-cCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV-SYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~-~~~~~~~~~~~~~ 76 (77)
..+.|||||||.|+||+| +.||+|+.++|+++|.|++++|.+.|+++++||+ ++..+.+..++.+
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~ 67 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK 67 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc
Confidence 347899999999999998 8999999999999999999999999999999999 6777877777754
No 36
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=9.6e-17 Score=103.17 Aligned_cols=69 Identities=29% Similarity=0.467 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++...|||+|||.|+||-|.|...||.++|+-++|+|+|+++.+.++|++++++|++.+...+.+||..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~ 70 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDT 70 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcC
Confidence 345789999999999999999999999999999999999999999999999999999998999999864
No 37
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.65 E-value=2.8e-16 Score=98.08 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=50.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+||||||.|+||+|+|...||+|++++|+|+|+|+++.+.++|+++++++++.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~ 53 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRD 53 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEECh
Confidence 48999999999999999999999999999999999999999999999998864
No 38
>KOG1322|consensus
Probab=99.65 E-value=6e-16 Score=101.52 Aligned_cols=67 Identities=61% Similarity=1.091 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+.++||.+|.|+|++|+|...||++.|++++|||++.+++|.++|+++|++.++++.+++..|+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~ 74 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLS 74 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999887766653
No 39
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.64 E-value=8.4e-16 Score=99.01 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCCCCCCCCC-CCCcceeeeCC-eeHHHHHHHHHHhcC-CCeEEEEccCC-HHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTL-SRPKPLVEFAN-KPMLLHQIEALVEAG-VREVILAVSYR-AEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~-~~~K~ll~i~g-~~li~~~l~~l~~~~-~~~ivvv~~~~-~~~~~~~~~ 75 (77)
+.+||||||.|+||+|+|. ..||+|++++| +|+|+++++++.+.+ +++|+|+++++ .+.+.+++.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~ 69 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP 69 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh
Confidence 4789999999999999995 79999999998 999999999999985 99999999874 344555553
No 40
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.64 E-value=8.9e-16 Score=95.43 Aligned_cols=60 Identities=38% Similarity=0.574 Sum_probs=55.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+||+|||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|+++++.+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhC
Confidence 58999999999986 6899999999999999999999999999999999988888887765
No 41
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.62 E-value=3.2e-15 Score=91.72 Aligned_cols=61 Identities=34% Similarity=0.555 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|.+||+|||+|+||++ .||++++++|+|+|+|+++++.++++++++|+++++.+....++.
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~ 61 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYIN 61 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHh
Confidence 4689999999999953 689999999999999999999988899999999887777777765
No 42
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.61 E-value=2.4e-15 Score=89.33 Aligned_cols=55 Identities=35% Similarity=0.614 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+||||||.|+|| +.||++++++|+|||+++++.+.+.++++|+|++++ +.+.+++
T Consensus 1 ~vILa~G~s~Rm-----g~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~ 55 (160)
T PF12804_consen 1 AVILAAGKSSRM-----GGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYL 55 (160)
T ss_dssp EEEEESSSCGGG-----TSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHH
T ss_pred CEEECCcCcccC-----CCCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHH
Confidence 699999999999 459999999999999999999999999999999988 4454444
No 43
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.61 E-value=2.8e-15 Score=101.51 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=58.3
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|...+.+||||||.|+||+. ..||+|++++|+|+|+|+++++.+.++++++|++++..+.+.+++.
T Consensus 2 ~~~~~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~ 67 (456)
T PRK14356 2 MASTTGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP 67 (456)
T ss_pred CCcceeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc
Confidence 34468999999999999974 7899999999999999999999999889999999888787777663
No 44
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.60 E-value=5.4e-15 Score=101.32 Aligned_cols=64 Identities=31% Similarity=0.535 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++.+||||||.|+||++ ..||+|+|++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~ 69 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ 69 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc
Confidence 568999999999999986 6799999999999999999999999999999999988888888774
No 45
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.59 E-value=4.6e-15 Score=99.98 Aligned_cols=63 Identities=35% Similarity=0.499 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++++++++.+.+.+++.+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~ 63 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN 63 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC
Confidence 5799999999999987 78999999999999999999999999999999999888888888753
No 46
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=5.9e-15 Score=99.67 Aligned_cols=65 Identities=34% Similarity=0.443 Sum_probs=58.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~ 67 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAA 67 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhh
Confidence 4568999999999999975 6799999999999999999999999999999999988888887764
No 47
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.59 E-value=6.6e-15 Score=99.65 Aligned_cols=64 Identities=33% Similarity=0.534 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++++++++.+.+.+++.
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~ 64 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG 64 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc
Confidence 357899999999999975 7899999999999999999999999999999999988888888775
No 48
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.57 E-value=1e-14 Score=98.00 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=57.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
|++.+||||||.|+||++ ..||+|+|++|+|+|+|+++.+.++ +++++|+++++.+.+.+++.+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~ 64 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLE 64 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh
Confidence 357899999999999987 7899999999999999999999987 788999999988988888753
No 49
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.57 E-value=1e-14 Score=99.00 Aligned_cols=65 Identities=34% Similarity=0.488 Sum_probs=58.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++++.+||||||.|+||++ ..||+|++++|+|+|+|+++.+.+++++++++++++..+.+.+++.
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~ 67 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA 67 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc
Confidence 3458999999999999985 7899999999999999999999999999999999988788888774
No 50
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.3e-14 Score=97.88 Aligned_cols=64 Identities=38% Similarity=0.560 Sum_probs=60.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.+.+||||||.|+||+. ..||.|++++|+||++|+++.....+++++++|.++..+.+++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcc
Confidence 46899999999999998 89999999999999999999999999999999999999999988763
No 51
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=1.6e-14 Score=98.18 Aligned_cols=65 Identities=31% Similarity=0.511 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
.++.+||||||.|+||++ ..||+|++++|+|+|+|+++++.+++++++++++++..+.+.+++.+
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~ 66 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAG 66 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhcc
Confidence 358999999999999975 78999999999999999999999999999999999888888888753
No 52
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.56 E-value=1.6e-14 Score=98.72 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+.+||||||.|+||++ ..||+|++++|+|+|+|+++++.+++++++++++++..+.+.+++.
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~ 66 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVA 66 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhh
Confidence 457899999999999986 6899999999999999999999999999999999888788887764
No 53
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.56 E-value=2e-14 Score=90.57 Aligned_cols=60 Identities=28% Similarity=0.548 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH-HHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA-EQMEDE 73 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~-~~~~~~ 73 (77)
+.+||+|||.|+||+. +.||+|++++|+|+|.|+++.+.+.. +++|+|+++++. +.+++.
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~ 62 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEEL 62 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHH
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHh
Confidence 4689999999999986 78999999999999999999999865 899999998764 444443
No 54
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.55 E-value=3.4e-14 Score=90.97 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRA 67 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~ 67 (77)
+.+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+.+. ++++|+|+++++.
T Consensus 23 ~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~ 79 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSY 79 (252)
T ss_pred CceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHH
Confidence 358899999999999964 5799999999999999999999985 6999999998763
No 55
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.55 E-value=3.3e-14 Score=85.63 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=50.2
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
+.+||||||.|+||+ .||++++++|+|+++|+++.+.+.++++|+|+++++.+...+.
T Consensus 1 ~~~vIlAgG~s~R~g-----~~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~ 58 (186)
T cd04182 1 IAAIILAAGRSSRMG-----GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAA 58 (186)
T ss_pred CeEEEECCCCCCCCC-----CCceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHH
Confidence 468999999999995 3899999999999999999999988899999998765554443
No 56
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.54 E-value=3e-14 Score=96.28 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+.+||||||.|+||++ ..||+|++++|+|+|+|+++++.++++++++|++++..+.+.+++.
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~ 63 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLA 63 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc
Confidence 5789999999999986 7899999999999999999999999999999999888788888764
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.52 E-value=3.6e-14 Score=97.17 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=50.7
Q ss_pred cEEEEEeCCCCCCCCCCCCC-CCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 11 MKALILVGGYGTRLRPLTLS-RPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~-~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+.+||||||.|+||+|+|.. .||+|+++.| +|+|+++++++...++++++|+++..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~ 58 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEE 58 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHH
Confidence 46899999999999999965 8999999966 89999999999998899999988854
No 58
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.52 E-value=8.4e-14 Score=87.05 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=51.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH-HHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA-EQM 70 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~-~~~ 70 (77)
+++.+||||||.|+||+. +.||+|++++|+|+++|+++++.+++ +++|+|+++.+. +.+
T Consensus 2 ~~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~ 62 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDF 62 (227)
T ss_pred CceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHH
Confidence 457899999999999953 57899999999999999999999875 899999998765 444
No 59
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.51 E-value=7.6e-14 Score=84.55 Aligned_cols=55 Identities=27% Similarity=0.464 Sum_probs=48.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
+||||||.|+|| +.||++++++|+|+++|+++.+.++++++++|+++++.+.+.+
T Consensus 2 ~iIla~G~s~R~-----g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~ 56 (188)
T TIGR03310 2 AIILAAGLSSRM-----GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVA 56 (188)
T ss_pred eEEECCCCcccC-----CCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHH
Confidence 799999999999 4589999999999999999999988899999999877654443
No 60
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.51 E-value=8.4e-14 Score=88.12 Aligned_cols=63 Identities=30% Similarity=0.556 Sum_probs=54.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCC-HHHHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYR-AEQMEDE 73 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~-~~~~~~~ 73 (77)
++++.+||+|||.|+||+. +.||++++++|+|+++|+++.+.... +++|+|+++++ .+.+.++
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~ 66 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKL 66 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHh
Confidence 3568999999999999987 88999999999999999999999976 89999999874 4444443
No 61
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.51 E-value=1e-13 Score=84.87 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~ 69 (77)
+++.+||||||.|+||+ +.||++++++|+|+++|+++.+. .++++|+|+++.+.+.
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~ 57 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLAR 57 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHH
Confidence 46899999999999995 46899999999999999999998 5689999998765443
No 62
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=9.3e-15 Score=97.73 Aligned_cols=69 Identities=33% Similarity=0.587 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCee-HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKP-MLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~-li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++++-++|||+|+|+|+.|||+.++||-+||+|+. +|+++|+++.++|+.+|.|++.+....+.+||..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~ 72 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGR 72 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhC
Confidence 45688999999999999999999999999999976 5999999999999999999999998999999863
No 63
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.49 E-value=1.4e-13 Score=85.35 Aligned_cols=59 Identities=31% Similarity=0.538 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCH-HHHHHH
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRA-EQMEDE 73 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~-~~~~~~ 73 (77)
.+||||||.|+||+. ..||+|++++|+|+++|+++++.++ ++++++|+++++. +.+...
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~ 61 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKY 61 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHH
Confidence 379999999999964 4689999999999999999999998 6999999998653 444443
No 64
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.48 E-value=1.9e-13 Score=85.79 Aligned_cols=54 Identities=17% Similarity=0.469 Sum_probs=47.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYR 66 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~ 66 (77)
.+.+||||||.|+||+. +.||+|++++|+|+|+|+++++..++ +++++|+++.+
T Consensus 2 ~~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~ 56 (230)
T PRK13385 2 NYELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQ 56 (230)
T ss_pred ceEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChh
Confidence 36899999999999963 57999999999999999999998865 89999998764
No 65
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=91.74 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=52.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQM 70 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~ 70 (77)
|+++.+||||||.|+||+. +.||++++++|+|+++|+++.+.+.+ +++|+|+++++....
T Consensus 3 mm~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~ 63 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAY 63 (378)
T ss_pred CCcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHH
Confidence 4568999999999999954 67999999999999999999999987 799999988754443
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.47 E-value=2.5e-13 Score=84.04 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHHH
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQME 71 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~~ 71 (77)
.+||||||.|+||+. ..||++++++|+|+++|+++++.+++ +++|+|+++++.....
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~ 59 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLA 59 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHH
Confidence 589999999999964 36899999999999999999999876 8999999987654433
No 67
>KOG1462|consensus
Probab=99.47 E-value=1.8e-14 Score=96.14 Aligned_cols=68 Identities=35% Similarity=0.581 Sum_probs=60.8
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC-CHHHHHHHH
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY-RAEQMEDEL 74 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~-~~~~~~~~~ 74 (77)
.+.++++||+|+|.|+||.-++...||+|+|++++|||+|.+++|.++|+++++|++.+ +.+.+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al 74 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESAL 74 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHH
Confidence 35679999999999999999889999999999999999999999999999999999987 455666555
No 68
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.47 E-value=1.9e-13 Score=82.60 Aligned_cols=52 Identities=35% Similarity=0.577 Sum_probs=46.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+.+||||||.|+||+ .||++++++|+|+++|+++.+... +++|+|+++.+.+
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~ 52 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQE 52 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChH
Confidence 468999999999994 489999999999999999999988 8999999987644
No 69
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.47 E-value=1.9e-13 Score=83.52 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=46.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~ 67 (77)
+.+||||||.|+|| +.+|.+++++|+|+++|+++.+.+.++++++|+++++.
T Consensus 1 ~~~vILAgG~s~Rm-----g~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~ 52 (190)
T TIGR03202 1 IVAIYLAAGQSRRM-----GENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKY 52 (190)
T ss_pred CeEEEEcCCccccC-----CCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCcc
Confidence 35899999999999 55899999999999999999888888999999998654
No 70
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=3.1e-13 Score=91.40 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=54.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++||||||.|+||++ ..||+|++++|+|+|+|+++++.+. .++++|++++..+.+.+++.
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~~~i~vv~~~~~~~i~~~~~ 61 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-AQKVGVVLGHEAELVKKLLP 61 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHhcc
Confidence 4799999999999975 7899999999999999999999987 48899999988888887764
No 71
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=3e-13 Score=88.65 Aligned_cols=64 Identities=25% Similarity=0.489 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCCCCCCCC-CCCCcceeee-CCeeHHHHHHHHHHh-cCCCeEEEEccCC-HHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLT-LSRPKPLVEF-ANKPMLLHQIEALVE-AGVREVILAVSYR-AEQMEDEL 74 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t-~~~~K~ll~i-~g~~li~~~l~~l~~-~~~~~ivvv~~~~-~~~~~~~~ 74 (77)
+.+||||||.|+||+|++ +.+||||+++ ++++|++.+++++.. .+.++++|||+++ ...+.+.+
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql 69 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQL 69 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHH
Confidence 678999999999999998 8999999999 559999999999998 4588999999875 34444443
No 72
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.45 E-value=4.4e-13 Score=82.93 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 5 GDNPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 5 ~~~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
|.+.+++.+||||||.|+|| +.+|++++++|+|+++|+++.+... +++++|++++
T Consensus 2 ~~~~~~~~~vILAgG~s~Rm-----g~~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~ 56 (200)
T PRK02726 2 KTVKNNLVALILAGGKSSRM-----GQDKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW 56 (200)
T ss_pred CCcCCCceEEEEcCCCcccC-----CCCceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC
Confidence 34456799999999999999 5589999999999999999999865 7889988864
No 73
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.44 E-value=6.2e-13 Score=83.72 Aligned_cols=57 Identities=30% Similarity=0.453 Sum_probs=49.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
++.++|+|+|.|+||+ +|+|++++|+|+|+|+++.+.++++++|+|++++ +.+.+++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~ 58 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAV 58 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHH
Confidence 5789999999999994 4999999999999999999999999999998864 4555554
No 74
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.42 E-value=5.6e-13 Score=81.03 Aligned_cols=61 Identities=38% Similarity=0.562 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.+||+|||+|+||+ ..-|++++++|+|||+|+++.+.. .+++++++++++...++.++.+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~ 61 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLES 61 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHh
Confidence 358999999999996 245999999999999999999998 5899999999888888887754
No 75
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.42 E-value=9.2e-13 Score=81.66 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
...+.+||||||+|+|| +.+|.|++++|+|++.++++...++++++++||++++
T Consensus 3 ~~~v~~VvLAAGrssRm-----G~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~ 56 (199)
T COG2068 3 PSTVAAVVLAAGRSSRM-----GQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHR 56 (199)
T ss_pred CcceEEEEEcccccccC-----CCcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 34689999999999999 5789999999999999999999999999999999986
No 76
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.42 E-value=6.4e-13 Score=91.37 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=53.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCC-CCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccCC-HHHHHHHH
Q psy9166 10 NMKALILVGGYGTRLRPLTLS-RPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSYR-AEQMEDEL 74 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~-~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~ 74 (77)
.+.+||||||.|+||+|+|.. .||+|+++.| +||++++++++...++.+.+|+++.. .+.+.+.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql 72 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQL 72 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHH
Confidence 479999999999999999965 7999999954 79999999999988776666777753 44555444
No 77
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.42 E-value=1e-12 Score=82.47 Aligned_cols=58 Identities=33% Similarity=0.465 Sum_probs=50.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.+||||+|.|+||+ +|+|++++|+|+|+|+++.+.++ ++++|+|+++. +.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH
Confidence 4789999999999994 39999999999999999999998 79999999864 55666554
No 78
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.41 E-value=1.1e-12 Score=82.37 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+.++|+|+|.|+||+ ||+|++++|+|+|+|+++.+.++ ++++|+|++++ +.+.+++.
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~ 59 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE 59 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH
Confidence 578999999999995 49999999999999999999998 89999998865 55555553
No 79
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=7.4e-13 Score=81.75 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=47.6
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCC-eeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFAN-KPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g-~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+.+++.+||||||.|+|| +.+|++++++| +|+++++++.+.+. +++|+|++++
T Consensus 5 ~~~~i~~vILAgG~s~Rm-----G~~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 5 MIDNIPCVILAGGKSSRM-----GENKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred cccCceEEEECCcccccC-----CCCceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 345689999999999999 66899999999 99999999999877 8899988875
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.40 E-value=1.5e-12 Score=79.00 Aligned_cols=53 Identities=30% Similarity=0.542 Sum_probs=45.7
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+.+||||||.|+||+ +.||++++++|+|+|+|+++.+.. .+++|+|++++..+
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~ 53 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPE 53 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHH
Confidence 468999999999995 358999999999999999999976 48999999876543
No 81
>KOG1461|consensus
Probab=99.38 E-value=2.2e-12 Score=90.12 Aligned_cols=69 Identities=36% Similarity=0.552 Sum_probs=65.3
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
...++||++|....+||.|+|...|+.|+|+.+.|||+|+++.|.++|+.+|+|+|+.+..++.+|+++
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~ 90 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEK 90 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhh
Confidence 356899999999999999999999999999999999999999999999999999999888999999875
No 82
>KOG1460|consensus
Probab=99.36 E-value=2e-12 Score=84.68 Aligned_cols=66 Identities=42% Similarity=0.710 Sum_probs=58.4
Q ss_pred CcEEEEEeCC--CCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhc-CCCeEEEEccCCHHHHHHHHh
Q psy9166 10 NMKALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG--~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~-~~~~ivvv~~~~~~~~~~~~~ 75 (77)
++.|||+-+| +|+||+|++-+.||+|+|++|+|||+|-++++.+. +..+|+++.=++++.+.+++.
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis 70 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFIS 70 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHH
Confidence 5789999998 79999999999999999999999999999999985 589999987677777776664
No 83
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.35 E-value=3.5e-12 Score=80.86 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=46.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+||+|+|.|+||. +|+|++++|+|||+|+++++.++++++|+|+++. +.+.+.+
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~ 55 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTC 55 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHH
Confidence 6999999999994 5999999999999999999998889999998864 3444444
No 84
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.33 E-value=8.4e-12 Score=83.39 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
+++.+||||||.|+||+ +.||+|++++|+|+|+|+++.+... +++|+|+++.+.+.+.++
T Consensus 4 ~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~ 63 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDL 63 (366)
T ss_pred CCceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhh
Confidence 36889999999999995 4689999999999999999999865 889988776555555443
No 85
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.31 E-value=1.1e-11 Score=76.85 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=44.0
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
++.+||+|+|.|+||+ +|++++++|+|+|+|+++.+.+++ +++|+|+++.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~ 51 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDD 51 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECCc
Confidence 3679999999999994 399999999999999999999987 7888887743
No 86
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.30 E-value=1.1e-11 Score=82.82 Aligned_cols=53 Identities=23% Similarity=0.412 Sum_probs=46.5
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+..+.+||||||+|+|| +.+|++++++|+|+|+|+++.+... +++++|+++..
T Consensus 172 ~~~i~~iILAGG~SsRm-----G~~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~ 224 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRM-----GSDKALLSYHESNQLVHTAALLRPH-CQEVFISCRAE 224 (369)
T ss_pred cCCceEEEEcCCccccC-----CCCcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCc
Confidence 45678999999999999 5689999999999999999999875 78888887754
No 87
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.30 E-value=1.3e-11 Score=77.48 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=47.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCH--HHHHHHH
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRA--EQMEDEL 74 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~--~~~~~~~ 74 (77)
+||+|+|.|+||+ +|++++++|+|+++|+++.+.+++ +++++|+++.+. +.+.+++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~ 60 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA 60 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHH
Confidence 7999999999993 399999999999999999999987 899999998653 4554443
No 88
>PLN02917 CMP-KDO synthetase
Probab=99.27 E-value=2.7e-11 Score=78.99 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccCCHHHHHHHHh
Q psy9166 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 7 ~~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~~~~~~~~~~~ 75 (77)
..+++.+||+|+|.|+||+ +|+|++++|+|||+|+++.+..++ .+.|+|. .+.+.+.+++.
T Consensus 44 ~~~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~--~~~e~I~~~~~ 105 (293)
T PLN02917 44 FRSRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA--TDDERIAECCR 105 (293)
T ss_pred cCCcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE--CChHHHHHHHH
Confidence 3457889999999999994 399999999999999999999876 4554444 34456665543
No 89
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.19 E-value=5.4e-11 Score=79.24 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=45.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
..+.+||||||+|+|| +.+|.|++++|+|+++|+++.+... +++|+|++++.
T Consensus 159 ~~i~~IILAGGkSsRM-----G~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~ 210 (346)
T PRK14500 159 TPLYGLVLTGGKSRRM-----GKDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPS 210 (346)
T ss_pred CCceEEEEeccccccC-----CCCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCch
Confidence 3678999999999999 5689999999999999999998766 78898888654
No 90
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.19 E-value=6.4e-11 Score=73.35 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=44.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+..+.+||||+|+|+|| . +|.+++++|+|+++|+++.+... .+.++|+.+.+.+
T Consensus 2 ~~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~-~~~vvi~~~~~~~ 55 (192)
T COG0746 2 MTPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ-VDVVVISANRNQG 55 (192)
T ss_pred CCCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhccc-CCEEEEeCCCchh
Confidence 35689999999999999 3 69999999999999999999987 4556666655543
No 91
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.16 E-value=2e-10 Score=74.11 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=51.0
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhc--------CCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEA--------GVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~--------~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
+.+|+||||.|+||+. ..||++++++ |+|++++.++.+... ++..+++.+.+..+.+.+++++
T Consensus 1 va~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~ 74 (266)
T cd04180 1 VAVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred CEEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH
Confidence 3689999999999964 7899999998 999999999999763 2555555555667888888875
No 92
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.08 E-value=5.5e-10 Score=70.29 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=41.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 13 ~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
+||+|+|.|+||+ +|.+.+++|+|++.|+++.+.+++ +++|+|++..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~ 49 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD 49 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 7999999999994 399999999999999999999987 7888777654
No 93
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.03 E-value=2.2e-09 Score=66.46 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=42.8
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
.+||+|-|.|+|+.. |.+.+++|+|||+|+++++.+++ +++|+|.|..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~ 49 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD 49 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS
T ss_pred CEEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC
Confidence 379999999999964 99999999999999999999987 8999998865
No 94
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.99 E-value=2.6e-09 Score=73.82 Aligned_cols=65 Identities=28% Similarity=0.431 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc------------C-CCeEEEEcc-CCHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA------------G-VREVILAVS-YRAEQME 71 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~------------~-~~~ivvv~~-~~~~~~~ 71 (77)
.++.+||||||.|+||+. ..||+++++ .|+|++++.++++... + .-+++|+++ +..+.+.
T Consensus 105 gkvavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~ 181 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTR 181 (482)
T ss_pred CCeEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHH
Confidence 458999999999999975 889999999 5899999999999875 1 124555554 6678888
Q ss_pred HHHhc
Q psy9166 72 DELLL 76 (77)
Q Consensus 72 ~~~~~ 76 (77)
+++++
T Consensus 182 ~~f~~ 186 (482)
T PTZ00339 182 QFLEE 186 (482)
T ss_pred HHHHh
Confidence 88864
No 95
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.92 E-value=6.1e-09 Score=68.91 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=52.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhcC-----------CCeEEEEcc-CCHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEAG-----------VREVILAVS-YRAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~~-----------~~~ivvv~~-~~~~~~~~~ 73 (77)
.++.+|+||||+|+|++. ..||+++|++ |+|++++.++.+...+ .-++++.++ +..+.+.++
T Consensus 14 ~~va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 468899999999999953 7799999997 7999999999998742 124567777 567888888
Q ss_pred Hhc
Q psy9166 74 LLL 76 (77)
Q Consensus 74 ~~~ 76 (77)
+++
T Consensus 91 ~~~ 93 (323)
T cd04193 91 FKE 93 (323)
T ss_pred HHh
Confidence 864
No 96
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=9.7e-09 Score=65.04 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+++.+||+|.=.||||.. |+|..++|+|||.|+.++..+++.++++|.+.+ +.+.+.+.
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~ 60 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQ 60 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH
Confidence 457899999999999964 999999999999999999999999999999865 56666554
No 97
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=2.6e-07 Score=58.19 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~ 65 (77)
++..|+|+|.|.|+|... |-+.+++|+||+.|++.+..+++ +++|+|.+..
T Consensus 2 ~~~iAiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs 53 (228)
T COG1083 2 MKNIAIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS 53 (228)
T ss_pred cceEEEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc
Confidence 467899999999999964 99999999999999999999998 7888887643
No 98
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=5.7e-07 Score=56.97 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEccC--CHHHHHHHHh
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSY--RAEQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~~--~~~~~~~~~~ 75 (77)
++.+||=|.=.|+|+.. |.|+|++++|||+++++++..+. +++++|.++. ..+.+.++..
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~ 65 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR 65 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHH
Confidence 45566666667888854 99999999999999999999986 7899999874 3556665554
No 99
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.36 E-value=2.2e-06 Score=56.44 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CC-CeEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GV-REVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~-~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|++|||.|+||+- ..||.++++ .|+++++..++.+... +. -..+|.++. ..+...+++++
T Consensus 2 ~kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~ 73 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK 73 (300)
T ss_pred CcEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH
Confidence 367899999999999976 789999999 6789999988888653 32 245666664 46778888765
No 100
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.31 E-value=2.5e-06 Score=56.47 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=48.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhcC---------CCeEEEEccC-CHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEAG---------VREVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~~---------~~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.+|++|||+|+||+- ..||.++++ .|+++++..++++.+.+ .-.++|.++. ..++..+++++
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 579999999999987 889999998 58999999888876532 1255777774 46778888764
No 101
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.16 E-value=8.9e-06 Score=55.73 Aligned_cols=65 Identities=31% Similarity=0.388 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHh----cCC-CeEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVE----AGV-REVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~----~~~-~~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|+||||.|+||+- ..||.++++ .|.++++..++.+.+ .+. -.++|.++. ..++..+++++
T Consensus 55 ~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k 126 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK 126 (420)
T ss_dssp TCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH
T ss_pred CCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH
Confidence 568899999999999976 789999999 678888888877765 232 345666664 57888888764
No 102
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.06 E-value=1.6e-05 Score=55.17 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CCC-eEEEEccC-CHHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GVR-EVILAVSY-RAEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~~-~ivvv~~~-~~~~~~~~~~~ 76 (77)
.++.+|.||||.|+||+- ..||.++++ .|+++++..++.+... |.. ..++.++. ..++..++|++
T Consensus 78 ~k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k 149 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK 149 (469)
T ss_pred hcEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH
Confidence 467899999999999987 789999999 6799998888877553 432 44666664 46778888765
No 103
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.98 E-value=3e-05 Score=54.10 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc--------------CC-CeEEEEccC-CHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA--------------GV-REVILAVSY-RAEQ 69 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~--------------~~-~~ivvv~~~-~~~~ 69 (77)
.++.+|+||||+|+||+- ..||.++++ .++++++..++++... ++ -.++|.++. ..+.
T Consensus 115 gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 567899999999999976 789999877 5799999888876432 11 144677764 5677
Q ss_pred HHHHHhc
Q psy9166 70 MEDELLL 76 (77)
Q Consensus 70 ~~~~~~~ 76 (77)
..++|++
T Consensus 192 T~~ff~~ 198 (493)
T PLN02435 192 TRKFFES 198 (493)
T ss_pred HHHHHHh
Confidence 8888864
No 104
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.94 E-value=5.7e-05 Score=53.98 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee---CCeeHHHHHHHHHHhc-----------C-CCeEEEEccC-CHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF---ANKPMLLHQIEALVEA-----------G-VREVILAVSY-RAEQMED 72 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i---~g~~li~~~l~~l~~~-----------~-~~~ivvv~~~-~~~~~~~ 72 (77)
.++.+|++|||.|+||+- ..||.++++ .|+++++..++.+... + .-.++|.++. ..+...+
T Consensus 127 ~kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~ 203 (615)
T PLN02830 127 GNAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLK 203 (615)
T ss_pred CcEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHH
Confidence 468899999999999976 788999987 5899999988887554 1 1246777775 4677888
Q ss_pred HHhc
Q psy9166 73 ELLL 76 (77)
Q Consensus 73 ~~~~ 76 (77)
+|++
T Consensus 204 ~~~~ 207 (615)
T PLN02830 204 LLER 207 (615)
T ss_pred HHHH
Confidence 8765
No 105
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00012 Score=50.68 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeC-CeeHHHHHHHHHHhc----CC-CeEEEEccCCHHHHHHHH
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFA-NKPMLLHQIEALVEA----GV-REVILAVSYRAEQMEDEL 74 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~-g~~li~~~l~~l~~~----~~-~~ivvv~~~~~~~~~~~~ 74 (77)
..++.+|++|||+|+||+- ..||.++++. |+++++..++.+..+ ++ -+.++.++.+.++...++
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f 172 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYF 172 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHH
Confidence 3568999999999999987 7899999996 899999888776553 32 245666665554544444
No 106
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.53 E-value=0.00021 Score=43.26 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCcceeeeCC--eeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 30 SRPKPLVEFAN--KPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 30 ~~~K~ll~i~g--~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+.+|.+++++| +|+++++++.+.. .+++++|++++.
T Consensus 2 G~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~ 39 (178)
T PRK00576 2 GRDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPG 39 (178)
T ss_pred CCCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCC
Confidence 45899999999 9999999998764 489999998754
No 107
>KOG2388|consensus
Probab=96.14 E-value=0.018 Score=40.23 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeC---CeeHHHHHHHHHHhc----------CC-CeEEEEccC-CHHHHHHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFA---NKPMLLHQIEALVEA----------GV-REVILAVSY-RAEQMEDE 73 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~---g~~li~~~l~~l~~~----------~~-~~ivvv~~~-~~~~~~~~ 73 (77)
.+..++++|+|+|+|++- ..||.+.+++ |+.++++..+.+... +. -..+|.+.. -.+...++
T Consensus 96 ~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 467899999999999977 7899999986 455777665554332 21 134555554 35666666
Q ss_pred Hh
Q psy9166 74 LL 75 (77)
Q Consensus 74 ~~ 75 (77)
++
T Consensus 173 f~ 174 (477)
T KOG2388|consen 173 FE 174 (477)
T ss_pred Hh
Confidence 54
No 108
>KOG2638|consensus
Probab=89.40 E-value=2.2 Score=30.08 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhc----CCCeE-EEEccCC-HHHHHHHHhc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEA----GVREV-ILAVSYR-AEQMEDELLL 76 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~----~~~~i-vvv~~~~-~~~~~~~~~~ 76 (77)
.++.++=|.||.|+-|+- ..||.++++ +|.+.++-++..+... +++-- ++..+.+ .++....+++
T Consensus 102 ~KLavlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~k 173 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKK 173 (498)
T ss_pred hheEEEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHH
Confidence 456788899999999987 789999999 6788877666555443 34433 4444433 4666665554
No 109
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=86.49 E-value=1.7 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.5
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+|+++++++.+..+++++++|+++.
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~ 54 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD 54 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 7899999999999877788888764
No 110
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=80.19 E-value=7.1 Score=26.80 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCcceeeeCCeeH-HHHHHHHHHhc-CCCeEEEEccCC--HHHHHHHHh
Q psy9166 21 GTRLRPLTLSRPKPLVEFANKPM-LLHQIEALVEA-GVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 21 ~~R~~~~t~~~~K~ll~i~g~~l-i~~~l~~l~~~-~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
...|+++......-++.+.++|- +.+.+++|.++ |+++..++.+++ .+++.+.++
T Consensus 22 ~~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 22 EDKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 34566665555666778888875 88999999886 599888877765 466666554
No 111
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=78.29 E-value=4.8 Score=20.33 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=27.9
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|+.|+++..+.+.+.++..+.+.+........++.+
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~ 78 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH
Confidence 356899999999998899999988876665555443
No 112
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=77.40 E-value=5.6 Score=21.20 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=22.7
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.++|...+....+.|+++++|+.+...+...+.+
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l 37 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGSTDGTREIL 37 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHH
Confidence 3466677777778899999888765444444444
No 113
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=76.59 E-value=5.4 Score=21.71 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.3
Q ss_pred eeHHHHHHHHHHhcC--CCeEEEEccCCHHHHHH
Q psy9166 41 KPMLLHQIEALVEAG--VREVILAVSYRAEQMED 72 (77)
Q Consensus 41 ~~li~~~l~~l~~~~--~~~ivvv~~~~~~~~~~ 72 (77)
.+.+.++++++.+.+ ..+++|+.+...+...+
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~ 42 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLE 42 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHH
Confidence 578999999998886 66788877654444433
No 114
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=72.98 E-value=7.1 Score=22.84 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
++...||+++|..++-+. .+ ..++ -.+.+++......+.+.+++-+++++...
T Consensus 68 ~~aDivvitag~~~~~g~---sR-~~ll-~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGM---SR-LDLL-EANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSSSTTS---SH-HHHH-HHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred ccccEEEEeccccccccc---cH-HHHH-HHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 456789999987654321 11 2222 25678899999999998877666555433
No 115
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=70.30 E-value=20 Score=21.34 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCcceeee-CCeeH--HHHHHHHHHhcCCCeEEEEcc-CCHHHHHH
Q psy9166 20 YGTRLRPLTLSRPKPLVEF-ANKPM--LLHQIEALVEAGVREVILAVS-YRAEQMED 72 (77)
Q Consensus 20 ~~~R~~~~t~~~~K~ll~i-~g~~l--i~~~l~~l~~~~~~~ivvv~~-~~~~~~~~ 72 (77)
.|.|..+ +.||.++-+ +|++. +......+.+.|+.-+.|-.+ .+.+++..
T Consensus 98 ~g~R~~~---~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ 151 (165)
T cd01481 98 AGSRIEE---GVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQ 151 (165)
T ss_pred ccCCccC---CCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCCcCCHHHHHH
Confidence 4455443 567877656 66653 566778888888865555555 44555443
No 116
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.39 E-value=34 Score=22.76 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG 55 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~ 55 (77)
.-++|||++|..+|+.-+.+..--...+++--.++++=...+.+.+
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~ 138 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERG 138 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcC
Confidence 3579999999999985543222234455554446777777777765
No 117
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=66.63 E-value=14 Score=20.37 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=23.0
Q ss_pred eeeCCeeHHHHHHHHHHh--cCCCeEEEEcc
Q psy9166 36 VEFANKPMLLHQIEALVE--AGVREVILAVS 64 (77)
Q Consensus 36 l~i~g~~li~~~l~~l~~--~~~~~ivvv~~ 64 (77)
.-++.+|+..|++..+.+ .|.++|++-..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 346889999999999876 46888888653
No 118
>KOG2791|consensus
Probab=63.68 E-value=26 Score=24.37 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=29.9
Q ss_pred eeeeCCeeH-HHHHHHHHHhc-CCCeEEEEccCC--HHHHHHHHh
Q psy9166 35 LVEFANKPM-LLHQIEALVEA-GVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 35 ll~i~g~~l-i~~~l~~l~~~-~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
.+.+.++|. +..+++++++. |++++.++.+++ .+.+.+.++
T Consensus 122 V~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~ 166 (455)
T KOG2791|consen 122 VLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIE 166 (455)
T ss_pred EEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHh
Confidence 356688997 88999999986 599887777764 455555444
No 119
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=62.68 E-value=14 Score=20.60 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv 62 (77)
.+.|-++.+++.+...|+++|+++
T Consensus 39 E~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 39 EGYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE
Confidence 578999999999999999998775
No 120
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=60.87 E-value=14 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.+.|.+..+++.+...|+++++++.
T Consensus 96 y~~P~i~~~l~~l~~~g~~~iivlP 120 (159)
T cd03411 96 YGPPSIEEALEELKADGVDRIVVLP 120 (159)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 4689999999999999999998875
No 121
>PRK05086 malate dehydrogenase; Provisional
Probab=60.84 E-value=25 Score=23.42 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeee-CCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEF-ANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i-~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
.+..+||.++|...+- +. ..+-.+ .+..++...++.+.+.+++.+++++...
T Consensus 68 ~~~DiVIitaG~~~~~-----~~-~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 68 EGADVVLISAGVARKP-----GM-DRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCEEEEcCCCCCCC-----CC-CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 3467888888864332 11 111112 3567888889999988888887765443
No 122
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=60.62 E-value=16 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=23.8
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
|..++++.+......|++++++.+....+
T Consensus 83 G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~ 111 (153)
T COG1246 83 GERLLERLLADARELGIKELFVLTTRSPE 111 (153)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeecccHH
Confidence 46689999999999999999999864433
No 123
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=59.87 E-value=28 Score=19.25 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=25.2
Q ss_pred cceeeeCCeeHHHHHHHHHHh--cCCCeEEEEcc
Q psy9166 33 KPLVEFANKPMLLHQIEALVE--AGVREVILAVS 64 (77)
Q Consensus 33 K~ll~i~g~~li~~~l~~l~~--~~~~~ivvv~~ 64 (77)
+...-++.+|...|++..+.. .|.++|++-..
T Consensus 4 envV~vG~KPvmNYVlAvlt~fn~g~~eViiKAR 37 (91)
T COG1581 4 ENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKAR 37 (91)
T ss_pred ccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEec
Confidence 355667899999999999876 46889988654
No 124
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=59.63 E-value=16 Score=19.51 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 41 KPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.|-++.+++.+...|+++|+++-
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEe
Confidence 79999999999999999988764
No 125
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=59.08 E-value=33 Score=20.49 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccC---CHHHHHHHHhc
Q psy9166 43 MLLHQIEALVEAGVREVILAVSY---RAEQMEDELLL 76 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~---~~~~~~~~~~~ 76 (77)
-++++-+.|..+|+++|+.+... .-+++.++|++
T Consensus 107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHhC
Confidence 47888889999999999777543 45777777653
No 126
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=58.66 E-value=22 Score=25.86 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=29.0
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++-+|.+++|.+.|++.|+.|-+...=++.+++.
T Consensus 4 ~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~ 38 (557)
T COG3961 4 ITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIY 38 (557)
T ss_pred eeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhh
Confidence 35778999999999999999998876666666664
No 127
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=58.42 E-value=24 Score=23.21 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
.-..||+++|..++-+. .+ ..++ ..+.+++......+.+.+++-++++...
T Consensus 66 ~aDiVIitag~p~~~~~---~R-~~l~-~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 66 DADIVVITAGAPRKPGE---TR-LDLI-NRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCEEEEcCCCCCCCCC---CH-HHHH-HHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 35678889987554311 11 1111 2467888889999988877666555443
No 128
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=58.24 E-value=15 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
++.-+++++.+.|+++++++.++.
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHg 110 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHG 110 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCH
Confidence 466777888888999999998874
No 129
>PTZ00325 malate dehydrogenase; Provisional
Probab=56.37 E-value=30 Score=23.26 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
....+||.++|....-+. . ...++. .+..++..+++.+.+.+++.+++++...-+
T Consensus 75 ~gaDvVVitaG~~~~~~~---t-R~dll~-~N~~i~~~i~~~i~~~~~~~iviv~SNPvd 129 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGM---T-RDDLFN-TNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129 (321)
T ss_pred CCCCEEEECCCCCCCCCC---C-HHHHHH-HHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 456789999987543211 1 122221 345678889999999999988877655433
No 130
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=55.67 E-value=21 Score=20.20 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=20.6
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
+.|-++.+++.+.+.|.++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 67999999999999999988875
No 131
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=55.54 E-value=32 Score=21.36 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.7
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+-|+...++.....|+++|.|+|..++..-+..|
T Consensus 116 ~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 116 KEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 4588889999999999999999987655544444
No 132
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=55.21 E-value=22 Score=19.11 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=20.0
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
..|-++.+++.+.+.|.++|+|+
T Consensus 42 ~~p~~~~~l~~l~~~g~~~v~vv 64 (101)
T cd03416 42 AEPSLAEALDELAAQGATRIVVV 64 (101)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 37899999999999999988775
No 133
>PLN02602 lactate dehydrogenase
Probab=54.94 E-value=30 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEE-ccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA-VSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv-~~~ 65 (77)
++-..||++||...+-+. .+ .-++ ..+.+++......+.+.+++-++++ +++
T Consensus 104 ~daDiVVitAG~~~k~g~---tR-~dll-~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 104 AGSDLCIVTAGARQIPGE---SR-LNLL-QRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCCCEEEECCCCCCCcCC---CH-HHHH-HHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 345688889987654321 11 1111 2467788888999988877666554 444
No 134
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=54.61 E-value=36 Score=18.80 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.3
Q ss_pred eeCCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 37 EFANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 37 ~i~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.++|+|+.++.++.+.+.|+.-..|.-
T Consensus 15 ~~~g~~l~~~ll~~~~~~gi~GaTV~r 41 (101)
T PF02641_consen 15 RWGGKPLYEWLLERAREAGIAGATVFR 41 (101)
T ss_dssp EETTEEHHHHHHHHHHHTT-SEEEEEE
T ss_pred ccCceEHHHHHHHHHHHCCCCeEEEEc
Confidence 368999999999999999887666653
No 135
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=52.62 E-value=43 Score=19.18 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCC--HHHHHHHHh
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
-++...+++.+.++++|++.+++. .+....++.
T Consensus 44 ~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~ 78 (112)
T cd01025 44 NIDKLLERIAKGQVKEVILATNPTVEGEATALYIA 78 (112)
T ss_pred CHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHH
Confidence 477778888877899999999864 455555554
No 136
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.60 E-value=32 Score=22.96 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.+...||+++|...+-+. .+ .-++. .+.+++....+.+.+.+++-+++++.
T Consensus 70 ~~adivvitaG~~~k~g~---~R-~dll~-~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 70 ANSKVVIVTAGARQNEGE---SR-LDLVQ-RNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCEEEECCCCCCCCCC---CH-HHHHH-HHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 345678888887655211 11 12222 45778888888988888776666544
No 137
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=52.04 E-value=36 Score=22.39 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.+...||+++|....-+. .+ ..++ -.+.+++......+.+.+.+-+++++.
T Consensus 67 ~~aDIVIitag~~~~~g~---~R-~dll-~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 67 KDADIVVITAGAPQKPGE---TR-LDLL-EKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCEEEEccCCCCCCCC---CH-HHHH-HHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346788999987544211 11 1122 146788999999999887766655544
No 138
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=51.92 E-value=44 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCC---HHHHHHHHh
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYR---AEQMEDELL 75 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~---~~~~~~~~~ 75 (77)
-..-+++.|...|+++|.|++++. .+.+.++++
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~ 142 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFA 142 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH
Confidence 356778888889999999999875 355555554
No 139
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=51.37 E-value=34 Score=19.83 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.2
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
..|-+...++.+...|.++|+|+
T Consensus 42 ~~P~l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 42 AEPNWRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEe
Confidence 46889999999999999988776
No 140
>PHA01807 hypothetical protein
Probab=51.19 E-value=38 Score=20.19 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=26.0
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
|+-|++.+++.+.+.|+..+...++........+
T Consensus 99 G~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 99 AREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 4678999999999999999988887655444443
No 141
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=51.08 E-value=64 Score=21.63 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEE-ccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA-VSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv-~~~ 65 (77)
+.-..||+++|....-+ .....+++ .+..++......+.+.+++-++++ +|+
T Consensus 66 ~daDivvitaG~~~~~g----~~R~dll~-~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 66 KGADVVVIPAGVPRKPG----MTRDDLFN-VNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCCCEEEEeCCCCCCCC----ccHHHHHH-HhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 45678999999764432 11233333 356688888899988877766555 444
No 142
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=50.57 E-value=60 Score=21.53 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCCCCCCCCC------CCCc-ceeeeCC-eeHHHH-HHHHHHhcCCCeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLTL------SRPK-PLVEFAN-KPMLLH-QIEALVEAGVREVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~------~~~K-~ll~i~g-~~li~~-~l~~l~~~~~~~ivvv~~ 64 (77)
+...+.||+|.|.+...+++ +..| +.+-++| +.-|.+ .-.-+....+. +|+|+
T Consensus 102 ~tn~i~L~~G~G~~~~gl~~~E~~~I~~Hd~AV~~~Gn~~~~I~~K~~~ll~~i~iP--iVv~~ 163 (268)
T PF04609_consen 102 KTNMIGLARGSGGRIFGLTPKEIEQINEHDLAVFHLGNFKSCIIYKKRHLLRGIDIP--IVVCG 163 (268)
T ss_pred ccceEEEeccCCCCccCCCHHHHHHHhhcCEEEEEeCCHHHHHHHHHHHHHhhcCCc--EEEec
Confidence 45679999999999887763 1222 3344565 333444 44445556655 44444
No 143
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=50.27 E-value=39 Score=22.38 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
.+-..||++||....-+. .+ .-++. .+.+++....+.+.+.+++-+++++..
T Consensus 63 ~daDivVitag~~rk~g~---~R-~dll~-~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 63 KDADLVVITAGAPQKPGE---TR-LELVG-RNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCEEEECCCCCCCCCC---CH-HHHHH-HHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 345688889987543211 11 22222 357788889999988887766555443
No 144
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=49.35 E-value=45 Score=22.21 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
++-..||++||....-+. .+ ..++. .+.+++...+..+.+.+++-+++++.
T Consensus 72 ~~adivIitag~~~k~g~---~R-~dll~-~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 72 KDADLVVITAGAPQKPGE---TR-LDLVE-KNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCEEEEecCCCCCCCC---CH-HHHHH-HHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 345678888887544211 11 22222 45778888899998887766655544
No 145
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=48.79 E-value=48 Score=19.73 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 47 QIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 47 ~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
.++.|.+.|++.++-+.+.....+
T Consensus 3 l~~~L~~~Gi~~vFg~pG~~~~~l 26 (162)
T cd07038 3 LLERLKQLGVKHVFGVPGDYNLPL 26 (162)
T ss_pred HHHHHHHcCCCEEEEeCCccHHHH
Confidence 445555555665555555443333
No 146
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=46.84 E-value=61 Score=19.26 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
-+..++.|.+.|++.++-+.+.....+.+.+.
T Consensus 4 ~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~ 35 (172)
T PF02776_consen 4 AEALAEALKANGVTHVFGVPGSGNLPLLDALE 35 (172)
T ss_dssp HHHHHHHHHHTT-SEEEEE--GGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEEeChhHhHHHHHhh
Confidence 45667777777888777776655444544443
No 147
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.09 E-value=54 Score=21.68 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=30.8
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
-..+|+++|...+-+ ....-+-..+.+++......+.+.+.+-++++..
T Consensus 68 aDiViita~~~~~~~-----~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 68 ADVVVITAGANQKPG-----ETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCEEEEccCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 458889988765431 1121122256788889999998887665555543
No 148
>PLN00135 malate dehydrogenase
Probab=46.07 E-value=64 Score=21.59 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~ 64 (77)
.+-..||++||....-+ .....++ -.+..++......+.+ ++.+-+++++.
T Consensus 57 ~daDiVVitAG~~~k~g----~sR~dll-~~N~~I~~~i~~~i~~~~~p~aivivvs 108 (309)
T PLN00135 57 KGVNIAVMVGGFPRKEG----MERKDVM-SKNVSIYKSQASALEKHAAPDCKVLVVA 108 (309)
T ss_pred CCCCEEEEeCCCCCCCC----CcHHHHH-HHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34567888888754321 1111222 2456788888888888 47776655544
No 149
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=45.93 E-value=64 Score=19.24 Aligned_cols=29 Identities=21% Similarity=0.113 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
++.++.|.+.|++.++-+.+.....+.+.
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~a 32 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDA 32 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHH
Confidence 45666666777777776666544444333
No 150
>PLN02573 pyruvate decarboxylase
Probab=45.58 E-value=74 Score=23.00 Aligned_cols=45 Identities=29% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCCcceeeeC--CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 30 SRPKPLVEFA--NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 30 ~~~K~ll~i~--g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
..||+.-|+. ..+.-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal 49 (578)
T PLN02573 3 SAPKPATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHL 49 (578)
T ss_pred CCCCCCCccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHH
Confidence 3467777773 34557899999999999999999887666666555
No 151
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=45.51 E-value=69 Score=20.65 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=22.2
Q ss_pred eeeeCCee------HHHHHHHHHH-hcCCCeEEEEccCC
Q psy9166 35 LVEFANKP------MLLHQIEALV-EAGVREVILAVSYR 66 (77)
Q Consensus 35 ll~i~g~~------li~~~l~~l~-~~~~~~ivvv~~~~ 66 (77)
..|+|+++ .+...++.+. +.|++-+++.||-.
T Consensus 34 ~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA 72 (251)
T TIGR00067 34 RFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTA 72 (251)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 34566554 4556677787 78899888888843
No 152
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=44.90 E-value=27 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.|+++++|.+..+..+++ -|+|-|++..-+..+.+
T Consensus 235 sGKTV~qh~laK~sdadi-VVyigCGERGNEmtevL 269 (588)
T COG1155 235 SGKTVSQHTLSKLADGDI-VIYVGCGERGNEMTEVL 269 (588)
T ss_pred CCcEehhhhhhhhccCCE-EEEEecCCccchHHHHH
Confidence 489999999999888743 34555665433333333
No 153
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=44.68 E-value=46 Score=19.91 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccC
Q psy9166 44 LLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+....+.+.+.|+++|+++|..
T Consensus 73 L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 73 LNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred HHHHHHHHHhcCCcEEEEEecC
Confidence 5566778888999999999875
No 154
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.40 E-value=71 Score=20.16 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCC--HHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
|+..++++.+.++++|++.++.. .+....++.
T Consensus 123 i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~ 156 (195)
T TIGR00615 123 IAALLKRLQEESVKEVILATNPTVEGEATALYIA 156 (195)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHH
Confidence 77888888777799999999864 455555543
No 155
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=43.50 E-value=29 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=24.3
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
||+++.+.+.+..++++ -|++.|++...++.+++++
T Consensus 238 GKT~l~~~lak~s~aDv-iVyvg~GERG~Em~evle~ 273 (591)
T TIGR01042 238 GKTVISQSLSKYSNSDA-IVYVGCGERGNEMAEVLMD 273 (591)
T ss_pred CHHHHHHHHHhccCcCE-EEEEEEeechHHHHHHHHH
Confidence 68888888876555554 4566677776666666653
No 156
>PRK00865 glutamate racemase; Provisional
Probab=43.17 E-value=79 Score=20.39 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=21.1
Q ss_pred eeeeCCee------HHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 35 LVEFANKP------MLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 35 ll~i~g~~------li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
-.|++.++ .+...++.+.+.|++-++|.|+-.
T Consensus 41 ~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa 78 (261)
T PRK00865 41 RFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTA 78 (261)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchH
Confidence 34666654 334555667778899888888753
No 157
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=42.81 E-value=64 Score=21.39 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEE-ccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA-VSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv-~~~ 65 (77)
.+-..||+++|..+.-+ .....++. .+..++...++.+.+.+.+.++|+ +|+
T Consensus 68 ~~aDiVIitag~p~~~~----~sR~~l~~-~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 68 ANSDIVVITAGLPRKPG----MSREDLLS-MNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCCCEEEEcCCCCCCcC----CCHHHHHH-HHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 34567888988643221 00011111 356788888888888766655444 444
No 158
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=42.67 E-value=63 Score=19.42 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=40.0
Q ss_pred CcEEEEEeCC-CCCCCCCC-CCCCCcceeee---CCee---HHHHHHHHHHhcCCCeEEEEccCCH---HHHHHHHh
Q psy9166 10 NMKALILVGG-YGTRLRPL-TLSRPKPLVEF---ANKP---MLLHQIEALVEAGVREVILAVSYRA---EQMEDELL 75 (77)
Q Consensus 10 ~~~~vIlaaG-~~~R~~~~-t~~~~K~ll~i---~g~~---li~~~l~~l~~~~~~~ivvv~~~~~---~~~~~~~~ 75 (77)
++.+++.++- .-+||.|- +.-.+|+-+-+ .+-+ -|+.+-+.|.++|..+|+.....+. +++.+++.
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred ceeeeeecccCccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 3445555554 56888662 33444554433 1212 3778888899999999988776554 55555553
No 159
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=42.62 E-value=45 Score=18.40 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.0
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
+.|-+..+++.+.+.|.++++|+
T Consensus 43 ~~P~~~~~l~~l~~~g~~~i~vv 65 (117)
T cd03414 43 TRPSLPEALERLRALGARRVVVL 65 (117)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 47899999999998888888775
No 160
>PLN02757 sirohydrochlorine ferrochelatase
Probab=42.35 E-value=43 Score=20.05 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
..|-+..+++.+.+.|.++|+|+
T Consensus 56 ~~Psl~eal~~l~~~g~~~vvVv 78 (154)
T PLN02757 56 AEPSIKDAFGRCVEQGASRVIVS 78 (154)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEE
Confidence 47999999999998899988885
No 161
>PRK13844 recombination protein RecR; Provisional
Probab=42.23 E-value=82 Score=20.00 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCeEEEEccCC--HHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
++..++++.+.++++|++.++.. .+....++.
T Consensus 127 i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~yi~ 160 (200)
T PRK13844 127 LDILQQIIADRKIDEVILAISPTVEGETTAHFIS 160 (200)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHH
Confidence 77788888776799999999863 455555553
No 162
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=41.72 E-value=38 Score=21.78 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
-.++|-.+|.++=+--+.-+.|--++|..+.+==......+.+.|+..++=.-.-..+.+.+.+++
T Consensus 251 ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 251 ADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred CCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 468888888886654443466666667665443345666777787654332222346777777754
No 163
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=41.37 E-value=58 Score=17.46 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=20.8
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
|+.++.+..+.+.+.+...+++.+.....
T Consensus 72 g~~ll~~~~~~~~~~~~~~i~~~~~~~n~ 100 (131)
T TIGR01575 72 GRALLRELIDEAKGRGVNEIFLEVRVSNI 100 (131)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEecccH
Confidence 35678888888887778888876654433
No 164
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=40.70 E-value=81 Score=21.66 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCC--CCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 12 KALILVGGYGTR--LRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 12 ~~vIlaaG~~~R--~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.++|+--|.-.+ ++.+ +.....+.+.+.|..+ +.+.+.++|+++||+.+
T Consensus 24 ~~~ilveg~~d~~~l~~l--gi~g~~i~~s~~p~~~-cad~ii~~gi~rVVi~~ 74 (360)
T PRK14719 24 GIPILVEGPNDILSLKNL--KINANFITVSNTPVFQ-IADDLIAENISEVILLT 74 (360)
T ss_pred CCEEEEEcchHHHHHHHc--CCCCcEEEEeCCchHH-HHHHHHHcCCCEEEEEE
Confidence 356666554333 2333 5566788888888777 88888889999999998
No 165
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=40.49 E-value=65 Score=19.36 Aligned_cols=33 Identities=6% Similarity=0.070 Sum_probs=24.3
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
|+.+++.+++.+.+.|..++.+.+..++..-..
T Consensus 141 G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~ 173 (191)
T TIGR02382 141 GAELMQTALNWCYARGLTRLRVATQMGNTAALR 173 (191)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHH
Confidence 356888999998888999998887655444333
No 166
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=40.32 E-value=72 Score=19.14 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=23.8
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
+-++.++++.+.+.|+.++.+.+...+......
T Consensus 145 ~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ 177 (194)
T PRK10975 145 ARLMQAALNWCQARGLTRLRVATQMGNLAALRL 177 (194)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHH
Confidence 468889999988888999988776544443333
No 167
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=39.95 E-value=39 Score=22.60 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.+.|.++.+++.+.+.|+++++++.
T Consensus 97 y~~P~i~~~l~~l~~~g~~~ivvlP 121 (316)
T PF00762_consen 97 YGPPSIEDALEELKADGVDRIVVLP 121 (316)
T ss_dssp SSSSBHHHHHHHHHHTT-SEEEEEE
T ss_pred cCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 5789999999999999999998875
No 168
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=39.52 E-value=41 Score=19.36 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=20.5
Q ss_pred CCeeH---HHHHHHHHHhcCCCeEEEEccCC-HHHHHHHH
Q psy9166 39 ANKPM---LLHQIEALVEAGVREVILAVSYR-AEQMEDEL 74 (77)
Q Consensus 39 ~g~~l---i~~~l~~l~~~~~~~ivvv~~~~-~~~~~~~~ 74 (77)
+|.|+ .+...+.+.+.++++|+|..+.. .+.+.+.+
T Consensus 122 ~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii 161 (175)
T PF13727_consen 122 DGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRII 161 (175)
T ss_dssp TTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHH
T ss_pred cCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHH
Confidence 45554 35677777778899999988754 45555444
No 169
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.12 E-value=1.1e+02 Score=20.24 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.++|++.|.+++=.|++.-..|+.+-++|- ..-+.+.++...+-|+
T Consensus 23 ~v~i~~SG~sak~~Pl~~~~~~~~Ia~NGs------~~~~~~~~ikP~~Yv~ 68 (269)
T PRK09822 23 DCIIFLSGPTSRKTPLSLLRMKDVIAVNGS------VQYLLNNNVKPFLYLL 68 (269)
T ss_pred CEEEEecCcccccCchHHhccCCEEEEccH------HHHHhhcCCceEEEEe
Confidence 578999999999888887777888888774 2223445666664444
No 170
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=39.03 E-value=51 Score=19.20 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.5
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.|-++-+++.+.+.|+++|+|+..
T Consensus 76 ~P~~~~~l~~l~~~G~~~i~v~p~ 99 (135)
T cd00419 76 EPSTDDALEELAKEGVKNVVVVPI 99 (135)
T ss_pred CCCHHHHHHHHHHcCCCeEEEECC
Confidence 577889999999999999988764
No 171
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=38.97 E-value=64 Score=18.19 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEcc
Q psy9166 43 MLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.+..+++.+.++|+.+|.+++.
T Consensus 100 ~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 100 DLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred HHHHHHHHHHHcCCCEEEEEec
Confidence 3678888888999999888764
No 172
>PLN02470 acetolactate synthase
Probab=38.59 E-value=1.3e+02 Score=21.75 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=25.8
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.+.-+++++.|.+.|++.|+-+.+.....+.+.+
T Consensus 13 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal 46 (585)
T PLN02470 13 RKGADILVEALEREGVDTVFAYPGGASMEIHQAL 46 (585)
T ss_pred ccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHH
Confidence 3447889999999999999998887655555544
No 173
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=38.41 E-value=62 Score=18.27 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=23.6
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQME 71 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~ 71 (77)
.-++..+++.+.+.|+.++.+-+......+.
T Consensus 104 ~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y 134 (150)
T PLN02706 104 KKIIEALTEHARSAGCYKVILDCSEENKAFY 134 (150)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccccHHHH
Confidence 5688899999888899999887765544443
No 174
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.40 E-value=1e+02 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEE-ccC
Q psy9166 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA-VSY 65 (77)
Q Consensus 8 ~~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv-~~~ 65 (77)
.++-..||++||....-+. ....++. .+..++......+.+.+++-++++ +|+
T Consensus 66 ~~daDivvitaG~~~k~g~----tR~dll~-~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 66 LKGADVVVIPAGVPRKPGM----TRDDLFN-INAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred cCCCCEEEEeCCCCCCCCC----CHHHHHH-HHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 3456789999987543211 1122222 457788888999988887766555 444
No 175
>PRK03624 putative acetyltransferase; Provisional
Probab=38.09 E-value=69 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=20.3
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAE 68 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~ 68 (77)
+.+++++.+.+.+.+...+.+.+.....
T Consensus 87 ~~ll~~~~~~~~~~~~~~~~~~~~~~N~ 114 (140)
T PRK03624 87 RALVARLEKKLIARGCPKINLQVREDND 114 (140)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCcH
Confidence 4578888887877888888777655433
No 176
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=37.84 E-value=74 Score=17.63 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=21.6
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
|+.++.++++.+.+.+...+.+.+...
T Consensus 94 G~~Ll~~~~~~a~~~~~~~i~l~~~~~ 120 (144)
T PRK10146 94 GSKLLAWAEEEARQAGAEMTELSTNVK 120 (144)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 366889999998888898888877643
No 177
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=37.74 E-value=89 Score=19.62 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=22.7
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
|.+..+++.+.+.|+ .+++++++....++..+.
T Consensus 24 ~~~~~~i~~~~~~gi-~fv~aTGR~~~~~~~~~~ 56 (249)
T TIGR01485 24 LRLNALLEDHRGEDS-LLVYSTGRSPHSYKELQK 56 (249)
T ss_pred HHHHHHHHHhhccCc-eEEEEcCCCHHHHHHHHh
Confidence 455666666666766 788888887777766643
No 178
>PRK12435 ferrochelatase; Provisional
Probab=37.44 E-value=50 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.3
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.+.|.++-+++.+.+.|+++++++.
T Consensus 87 y~~P~i~~~l~~l~~~g~~~iv~lp 111 (311)
T PRK12435 87 HIEPFIEDAVEQMHNDGIEEAISIV 111 (311)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEEE
Confidence 4689999999999999999998875
No 179
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=36.91 E-value=95 Score=18.62 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
-...++..+.+.| -.++++++.....+.+.+.
T Consensus 21 ~~~~~l~~l~~~g-~~~~i~TGR~~~~~~~~~~ 52 (204)
T TIGR01484 21 ETIEALERLREAG-VKVVLVTGRSLAEIKELLK 52 (204)
T ss_pred HHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHH
Confidence 4556777787777 5889999988777776654
No 180
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.39 E-value=82 Score=17.70 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=23.1
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
....-+++.+.+.|++.+++..+...+++.+..++
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~ 100 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPGAESEELIEAARE 100 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHH
Confidence 35667788888889999999888777777666543
No 181
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=36.31 E-value=1.2e+02 Score=19.63 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=26.4
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE 53 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~ 53 (77)
-++|+|++|..+|+.-+.......+..++--.++++=-..+.+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~ 125 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAE 125 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHH
Confidence 4799999999999855432222445566533356555555554
No 182
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=36.19 E-value=53 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.+.|-|+-+++.+.+.|+++++++.
T Consensus 101 y~~P~i~~~l~~l~~~G~~~iv~lP 125 (322)
T TIGR00109 101 YGEPFTEEAVKELLKDGVERAVVLP 125 (322)
T ss_pred cCCCCHHHHHHHHHhcCCCeEEEEe
Confidence 4689999999999999999998874
No 183
>PRK00035 hemH ferrochelatase; Reviewed
Probab=36.09 E-value=54 Score=21.83 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
-+.|-++-+++.+.+.|+++|+|+.
T Consensus 102 y~~P~i~eal~~l~~~G~~~IivlP 126 (333)
T PRK00035 102 YWNPSIEEALEALKADGVDRIVVLP 126 (333)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999998874
No 184
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=35.66 E-value=99 Score=21.95 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=29.8
Q ss_pred Ccceeee-CCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 32 PKPLVEF-ANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 32 ~K~ll~i-~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
||...|- ...+.-+++++.|.+.|++.++.+.+.....+.+.+
T Consensus 2 ~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal 45 (530)
T PRK07092 2 PKATAPAAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDF 45 (530)
T ss_pred CccccCccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHH
Confidence 3444444 234567899999999999999998876655554444
No 185
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.60 E-value=1.2e+02 Score=20.15 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCCCCCCCCCC-CcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSR-PKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~-~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+-..||++||....-+. .+ -..++. .+..++......+...+++-+++++..
T Consensus 68 ~aDivvitaG~~~kpg~---tr~R~dll~-~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 68 DADIIVITAGPSIDPGN---TDDRLDLAQ-TNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCEEEECCCCCCCCCC---CchHHHHHH-HHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 45678888887544211 11 022222 357789999999999888777665543
No 186
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=35.56 E-value=66 Score=18.41 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=25.8
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEc-----cCCHHHHHHHHh
Q psy9166 41 KPMLLHQIEALVEAGVREVILAV-----SYRAEQMEDELL 75 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~-----~~~~~~~~~~~~ 75 (77)
.|-+..+++.+.+.|+++|+|.. +.+.+++.+.++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~ 94 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVD 94 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHH
Confidence 57899999999999999987753 344555555544
No 187
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=35.18 E-value=72 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=25.2
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
|+-++++.++.+.+.|+..+++.+......+.+
T Consensus 43 G~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe 75 (297)
T cd02169 43 ALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR 75 (297)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH
Confidence 356889999999888999999988765444444
No 188
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=34.68 E-value=87 Score=17.62 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=22.8
Q ss_pred eeHHHHHHHHH-HhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEAL-VEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l-~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.+++.+++.+ .+.|+.++.+.+...+....+..
T Consensus 95 ~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~ 129 (155)
T PF13420_consen 95 RKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFY 129 (155)
T ss_dssp HHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHH
T ss_pred HHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHH
Confidence 56888888888 88899999876655444444443
No 189
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=34.58 E-value=56 Score=18.76 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.8
Q ss_pred eCCeeHHHHHHHHHHhcCCC
Q psy9166 38 FANKPMLLHQIEALVEAGVR 57 (77)
Q Consensus 38 i~g~~li~~~l~~l~~~~~~ 57 (77)
+.|+|+.++.++.+.+.|+.
T Consensus 19 ~eGkp~~~~iverlre~Gi~ 38 (109)
T COG1993 19 HEGKPLYEAIVERLREEGIR 38 (109)
T ss_pred cCCeEHHHHHHHHHHHcCcC
Confidence 46899999999999987754
No 190
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=34.47 E-value=13 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=18.2
Q ss_pred EEeCCCCCCCCCCCCCCCcceeeeCCeeH
Q psy9166 15 ILVGGYGTRLRPLTLSRPKPLVEFANKPM 43 (77)
Q Consensus 15 IlaaG~~~R~~~~t~~~~K~ll~i~g~~l 43 (77)
=+++|..-||-| ++...-.|.+++|+..
T Consensus 62 dIpagTAVRFEP-G~~k~V~LV~~~G~r~ 89 (106)
T COG0832 62 DIPAGTAVRFEP-GDEKEVELVPLGGKRE 89 (106)
T ss_pred cccCCceEeeCC-CCccEEEEEEccCceE
Confidence 357788999988 2233345778877643
No 191
>PRK06223 malate dehydrogenase; Reviewed
Probab=34.02 E-value=1.1e+02 Score=20.04 Aligned_cols=51 Identities=6% Similarity=0.095 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEE-EccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL-AVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivv-v~~~ 65 (77)
.-..||+++|....-+ ....-+-..+.+++...+..+.+...+.++| ++++
T Consensus 70 ~aDiVii~~~~p~~~~-----~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 70 GSDVVVITAGVPRKPG-----MSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCEEEECCCCCCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 3567888887654321 1111011135577778888887776665444 4443
No 192
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=33.90 E-value=10 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=17.9
Q ss_pred EEeCCCCCCCCCCCCCCCcceeeeCCee
Q psy9166 15 ILVGGYGTRLRPLTLSRPKPLVEFANKP 42 (77)
Q Consensus 15 IlaaG~~~R~~~~t~~~~K~ll~i~g~~ 42 (77)
=+.||.+.||.| ++...-.|.+++|..
T Consensus 62 dIpaGTavRFEP-G~~k~V~LV~~~G~r 88 (101)
T cd00407 62 DIPAGTAVRFEP-GEEKEVELVPIGGKR 88 (101)
T ss_pred cccCCCeEEECC-CCeEEEEEEEccCce
Confidence 356789999988 223334577887754
No 193
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=33.79 E-value=98 Score=18.00 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=21.6
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQ 69 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~ 69 (77)
|+.+++++++.+.+.+...+.+.+...+..
T Consensus 84 G~~L~~~l~~~a~~~~~~~i~~~v~~~N~~ 113 (157)
T TIGR02406 84 ARRLLEALLERVACERVRHLETTITPDNQA 113 (157)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEcCCCHH
Confidence 356888899888777788887766654443
No 194
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=33.30 E-value=19 Score=19.50 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.2
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 40 NKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv 62 (77)
..|-+...++.+.+.|.++|+|+
T Consensus 35 ~~P~l~~~l~~l~~~g~~~ivvv 57 (105)
T PF01903_consen 35 AEPSLEEALERLVAQGARRIVVV 57 (105)
T ss_dssp CCSCCHHCCHHHHCCTCSEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCeEEEE
Confidence 57889999999999999998887
No 195
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=32.77 E-value=1.3e+02 Score=19.69 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEE-EEccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVI-LAVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~iv-vv~~~ 65 (77)
+-..||.++|..++-+. .+ ..+++ .+.+++...+..+.+...+.++ +++|+
T Consensus 66 dADiVIit~g~p~~~~~---~r-~e~~~-~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 66 GSDVVVITAGIPRKPGM---SR-DDLLG-TNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred CCCEEEEecCCCCCcCC---CH-HHHHH-HHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 34678888886554321 10 01111 3567788888888887766664 44444
No 196
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.73 E-value=67 Score=18.07 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.0
Q ss_pred eCCeeHHHHHHHHHHhcCCCeEEEEccCCH
Q psy9166 38 FANKPMLLHQIEALVEAGVREVILAVSYRA 67 (77)
Q Consensus 38 i~g~~li~~~l~~l~~~~~~~ivvv~~~~~ 67 (77)
.+.-++--++++.+.+.|++-|.|.++.+.
T Consensus 8 anrGeia~r~~ra~r~~Gi~tv~v~s~~d~ 37 (110)
T PF00289_consen 8 ANRGEIAVRIIRALRELGIETVAVNSNPDT 37 (110)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred ECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence 344556779999999999998888887653
No 197
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.37 E-value=1.4e+02 Score=20.03 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCC-CeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGV-REVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~-~~ivvv~~ 64 (77)
+-..||++||....-+. .+ ..++. .+..++......+...+. +-++|++.
T Consensus 78 daDivvitaG~~~k~g~---tR-~dll~-~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 78 DADWALLVGAKPRGPGM---ER-ADLLK-ANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CCCEEEEeCCCCCCCCC---cH-HHHHH-HHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 45678888887544211 11 12221 457788899999988773 66655554
No 198
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.97 E-value=1.5e+02 Score=19.96 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~ 64 (77)
...+||.+||....- +....-+--.+..++......+.+.+ .+-+++++.
T Consensus 76 ~aDiVVitAG~~~~~-----g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 76 DVDVAILVGAFPRKP-----GMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred CCCEEEEeCCCCCCc-----CCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 356788888865332 11111122246778888888998884 776655544
No 199
>PLN00106 malate dehydrogenase
Probab=31.76 E-value=1.3e+02 Score=20.37 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.....||.+||....-+ ...-.+++ .+..++....+.+.+.+++.+++++.
T Consensus 85 ~~aDiVVitAG~~~~~g----~~R~dll~-~N~~i~~~i~~~i~~~~p~aivivvS 135 (323)
T PLN00106 85 KGADLVIIPAGVPRKPG----MTRDDLFN-INAGIVKTLCEAVAKHCPNALVNIIS 135 (323)
T ss_pred CCCCEEEEeCCCCCCCC----CCHHHHHH-HHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44677888888653311 01112222 45667888889998888887766544
No 200
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=31.50 E-value=99 Score=17.77 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=9.0
Q ss_pred HHHHHHhcCCCeEEEEccC
Q psy9166 47 QIEALVEAGVREVILAVSY 65 (77)
Q Consensus 47 ~l~~l~~~~~~~ivvv~~~ 65 (77)
.++.|.+.|++.++-+-+.
T Consensus 3 i~~~L~~~Gv~~vfg~pg~ 21 (155)
T cd07035 3 LVEALKAEGVDHVFGVPGG 21 (155)
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3444445555555444443
No 201
>PHA00673 acetyltransferase domain containing protein
Probab=31.46 E-value=66 Score=19.45 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=22.3
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
|+.|++++.+...+.|...++|...+
T Consensus 103 G~~Ll~~A~~~Ar~~Gc~~lyis~~p 128 (154)
T PHA00673 103 GMALLRATEALARDLGATGLYVSGPT 128 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 46799999999999999999987654
No 202
>KOG0075|consensus
Probab=31.18 E-value=71 Score=19.74 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=22.9
Q ss_pred ceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 34 PLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 34 ~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
-+..++|+|.....++.+.+. ++-++-++.
T Consensus 68 klwD~gGq~rfrsmWerycR~-v~aivY~VD 97 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRG-VSAIVYVVD 97 (186)
T ss_pred EEEecCCCccHHHHHHHHhhc-CcEEEEEee
Confidence 356779999999999998876 666655543
No 203
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=31.02 E-value=1.7e+02 Score=19.73 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCC-CeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGV-REVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~-~~ivvv~~ 64 (77)
+-..||++||....- +....-+--.+..++......+...+. +-+++++.
T Consensus 79 daDvVVitAG~~~k~-----g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 79 DVDAALLVGAFPRKP-----GMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred CCCEEEEeCCCCCCC-----CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 346788888865332 111111112456788888888888876 66655544
No 204
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=31.01 E-value=1.3e+02 Score=18.59 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=8.2
Q ss_pred eCCeeHHHHHHHHHHhcC
Q psy9166 38 FANKPMLLHQIEALVEAG 55 (77)
Q Consensus 38 i~g~~li~~~l~~l~~~~ 55 (77)
+||-.+-.+.+..|.+.|
T Consensus 16 IGgG~va~~ka~~Ll~~g 33 (202)
T PRK06718 16 VGGGKVAGRRAITLLKYG 33 (202)
T ss_pred ECCCHHHHHHHHHHHHCC
Confidence 444444444444444444
No 205
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=30.92 E-value=1.4e+02 Score=19.09 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=29.6
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
+-..||.++|.+..-++ . ...+-..+.+++....+.+.+...+-++++.
T Consensus 70 ~aDiVv~t~~~~~~~g~---~--r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~ 118 (263)
T cd00650 70 DADVVIITAGVGRKPGM---G--RLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV 118 (263)
T ss_pred CCCEEEECCCCCCCcCC---C--HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678888887654422 1 1112224567888888888887666565544
No 206
>PRK13203 ureB urease subunit beta; Reviewed
Probab=30.63 E-value=12 Score=21.16 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=17.2
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCee
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANKP 42 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~~ 42 (77)
+.||.+.||.| ++...-.|.+++|..
T Consensus 63 IpaGTavRFEP-G~~k~V~LV~~gG~r 88 (102)
T PRK13203 63 IPAGTAVRFEP-GQTREVELVPLAGAR 88 (102)
T ss_pred cCCCCeEeECC-CCeEEEEEEEccCce
Confidence 46789999988 223334577777754
No 207
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=30.43 E-value=22 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred eCCCCCCCCCCCC---CCCcceeeeCCeeHHHHHHHH
Q psy9166 17 VGGYGTRLRPLTL---SRPKPLVEFANKPMLLHQIEA 50 (77)
Q Consensus 17 aaG~~~R~~~~t~---~~~K~ll~i~g~~li~~~l~~ 50 (77)
.+|-+..|.-+++ ..||+++-|+|..+|+.++..
T Consensus 207 tGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire 243 (294)
T COG0777 207 TGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIRE 243 (294)
T ss_pred ccchhHhHHhccCeeecCcccccccCcchhhhhhhcc
Confidence 3566666655543 689999999999999988753
No 208
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=30.28 E-value=13 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=16.7
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCee
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANKP 42 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~~ 42 (77)
+.||.+.||.|= +...-.|.+++|..
T Consensus 63 IpaGTavRFEPG-~~k~V~LV~~gG~r 88 (101)
T TIGR00192 63 IPSGTAVRFEPG-EEKSVELVAIGGNR 88 (101)
T ss_pred cCCCCeEeECCC-CeEEEEEEEccCce
Confidence 467889999881 12233567777754
No 209
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=29.54 E-value=1e+02 Score=16.81 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 46 HQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 46 ~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.....+.++|++-|+|.++. .+.+.+++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~-~~~~~~f~ 31 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGS-PEGIEKFC 31 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCC-HHHHHHHH
Confidence 34566777888755555443 33466655
No 210
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=29.49 E-value=91 Score=24.55 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeee------CCeeHHHHHHHH
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEF------ANKPMLLHQIEA 50 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i------~g~~li~~~l~~ 50 (77)
-..+|=|||.|+|+...+ ..-|.|.|+ .|.++.+..++.
T Consensus 93 ~~lllHaGG~S~RlP~~s-~~GK~f~p~P~~~~~~g~~l~~~~l~~ 137 (974)
T PRK13412 93 KRILLHAGGQSRRLPGYA-PSGKILTPVPVFRWERGQRLSQNLLSL 137 (974)
T ss_pred cEEEEecCCccccCcccc-ccccccccCCccccCCCChhHHHHHHH
Confidence 455666999999996654 334777665 256655544443
No 211
>PTZ00117 malate dehydrogenase; Provisional
Probab=29.01 E-value=1.7e+02 Score=19.55 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEE-EccC
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL-AVSY 65 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivv-v~~~ 65 (77)
+-..||.++|.+..-+. .+ -.+++ .|-+++......+.+...+.+++ ++|+
T Consensus 73 ~ADiVVitag~~~~~g~---~r-~dll~-~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 73 DSDVVVITAGVQRKEEM---TR-EDLLT-INGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CCCEEEECCCCCCCCCC---CH-HHHHH-HHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 34568888876544321 11 12233 24477888888888877776444 4444
No 212
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=28.97 E-value=82 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
.+.|.++-+++.+...|+++++++.
T Consensus 99 y~~P~i~~~v~~l~~~gv~~iv~~p 123 (320)
T COG0276 99 YGPPFIEEAVEELKKDGVERIVVLP 123 (320)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEE
Confidence 4789999999999999999998764
No 213
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=28.64 E-value=1.6e+02 Score=20.56 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~ 64 (77)
++-..||++||....-+. .+ ..++. .+..++......+.+ ++.+-++|++.
T Consensus 119 kdaDIVVitAG~prkpg~---tR-~dll~-~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGM---ER-ADLLD-INGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred CCCCEEEECCCCCCCCCC---CH-HHHHH-HHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 345678888887543211 11 11221 457788888888888 44666555544
No 214
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=28.53 E-value=1.3e+02 Score=18.10 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=7.2
Q ss_pred HHHHHhcCCCeEEEEcc
Q psy9166 48 IEALVEAGVREVILAVS 64 (77)
Q Consensus 48 l~~l~~~~~~~ivvv~~ 64 (77)
++.|.+.|++.++-+.+
T Consensus 4 ~~~L~~~Gv~~vFg~pG 20 (162)
T cd07037 4 VEELKRLGVRDVVISPG 20 (162)
T ss_pred HHHHHHCCCCEEEECCC
Confidence 33444444444444433
No 215
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=28.46 E-value=1.1e+02 Score=19.61 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=24.7
Q ss_pred CcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 32 PKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 32 ~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
-+++.|+.+++--+ .++.+.+.|++-+++.++.
T Consensus 112 l~~~~PLW~~~~~~-ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 112 LKSFAPLWHRDPEK-LMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred CEEeccccCCCHHH-HHHHHHHcCCeEEEEEEec
Confidence 37788888877655 6677778999888876654
No 216
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=28.38 E-value=1.1e+02 Score=16.88 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=21.4
Q ss_pred eeeeCCeeHHHHHHHHHHh--cCCCeEEEEc
Q psy9166 35 LVEFANKPMLLHQIEALVE--AGVREVILAV 63 (77)
Q Consensus 35 ll~i~g~~li~~~l~~l~~--~~~~~ivvv~ 63 (77)
-+.++.+|+..|++..+.. .|.++|++-.
T Consensus 6 ~i~Ig~kpvmnYV~~~~~~l~~g~~eV~iKa 36 (91)
T PRK04015 6 VVLVGKKPVMNYVLAVLTQFNQGAKEVVIKA 36 (91)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3456778998888888765 3688888854
No 217
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=28.29 E-value=1.5e+02 Score=21.05 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~ 64 (77)
++-..||++||....-+. . ...++. .+..++......+.+ ++.+-++|++.
T Consensus 175 kdaDiVVitAG~prkpG~---t-R~dLl~-~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGM---E-RADLLD-INGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred CcCCEEEECCCCCCCCCC---C-HHHHHH-HHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 345678888887543211 1 122222 356788899999988 67776665554
No 218
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=28.26 E-value=1.1e+02 Score=20.75 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHh-cCCCeEEEEccCCHHHHH
Q psy9166 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVSYRAEQME 71 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~-~~~~~ivvv~~~~~~~~~ 71 (77)
.+|--||.+|-.|+. +. -+.+.+.--++=+-..+.+.. ...++|+|||....+.+.
T Consensus 211 VGVTNAADRGLDMwa---Nf-G~aiQiKhLSL~~~laE~IV~sissdrIvIVCkdaee~vI 267 (338)
T PF09554_consen 211 VGVTNAADRGLDMWA---NF-GPAIQIKHLSLDEELAENIVSSISSDRIVIVCKDAEESVI 267 (338)
T ss_pred eccccchhcchhHHh---cc-ChheeeeeecccHHHHHHHHhhcccCeEEEEecchhHHHH
Confidence 456678888877743 11 122223222332334444433 336899999987655543
No 219
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=28.21 E-value=1.6e+02 Score=18.53 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..++..+.+.|+ .++++|++....+...++
T Consensus 26 ~~ai~~l~~~G~-~~~iaTGR~~~~~~~~~~ 55 (270)
T PRK10513 26 KQAIAAARAKGV-NVVLTTGRPYAGVHRYLK 55 (270)
T ss_pred HHHHHHHHHCCC-EEEEecCCChHHHHHHHH
Confidence 456667777776 688888877666655543
No 220
>PRK00076 recR recombination protein RecR; Reviewed
Probab=28.01 E-value=1.6e+02 Score=18.57 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCC--HHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
++..++++ +-++++|++.+++. .+....++.
T Consensus 123 i~~L~~ri-~~~v~EVIlA~~pt~EGe~Ta~yi~ 155 (196)
T PRK00076 123 IDELLERL-DGEVKEVILATNPTVEGEATAHYIA 155 (196)
T ss_pred HHHHHHHH-hCCCCEEEEeCCCCchHHHHHHHHH
Confidence 66777777 55699999999864 455555543
No 221
>PRK13202 ureB urease subunit beta; Reviewed
Probab=27.89 E-value=21 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=17.2
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCee
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANKP 42 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~~ 42 (77)
+.||.+.||.| ++...-.|.+++|..
T Consensus 64 IpaGTavRFEP-G~~k~V~LV~~gG~r 89 (104)
T PRK13202 64 IPAATAVRFEP-GIPQIVGLVPLGGRR 89 (104)
T ss_pred cCCCCeEEECC-CCeEEEEEEEccCCe
Confidence 46789999988 223334577777754
No 222
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.59 E-value=1.9e+02 Score=19.23 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=23.9
Q ss_pred eeeCCee---HHHHHHHH---HHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 36 VEFANKP---MLLHQIEA---LVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 36 l~i~g~~---li~~~l~~---l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.|++.++ +++++++. +.+.+++-+||.||-......+.++
T Consensus 42 ~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR 87 (269)
T COG0796 42 FPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLR 87 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHH
Confidence 3555443 55655554 5556788888888876555444443
No 223
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=27.38 E-value=1.3e+02 Score=17.12 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccC
Q psy9166 44 LLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+..+++.+.+++.++|.++.++
T Consensus 67 Lll~i~a~r~~~a~~i~~ViPY 88 (116)
T PF13793_consen 67 LLLLIDALRRAGAKRITLVIPY 88 (116)
T ss_dssp HHHHHHHHHHTTBSEEEEEESS
T ss_pred HHHHHHHHHHcCCcEEEEeccc
Confidence 5578888998999999998874
No 224
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=27.31 E-value=1.4e+02 Score=20.67 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 4 ~~l~~~L~~~GV~~vFg~pG~~~~~l~dal 33 (432)
T TIGR00173 4 SVLVEELVRLGVRHVVISPGSRSTPLALAA 33 (432)
T ss_pred HHHHHHHHHcCCCEEEECCCcccHHHHHHH
Confidence 566777777777777777766544444443
No 225
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.21 E-value=1.3e+02 Score=18.62 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=24.3
Q ss_pred CcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 32 PKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 32 ~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
-+++.|+.+++--+ .++.+...|++-+++.+..
T Consensus 115 l~~~~PLW~~~~~~-ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 115 LEPLAPLWGRDQEE-LLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred CEEEecccCCCHHH-HHHHHHHcCCeEEEEEecc
Confidence 37788888877655 6777778899877776653
No 226
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=27.05 E-value=73 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=21.5
Q ss_pred eeCCeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 37 EFANKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 37 ~i~g~~li~~~l~~l~~~~~~~ivvv 62 (77)
.+.|.|-++.++..+.+.|+++|.++
T Consensus 178 tvEG~P~~~~vi~~L~~~g~k~V~L~ 203 (262)
T PF06180_consen 178 TVEGYPSLEDVIARLKKKGIKKVHLI 203 (262)
T ss_dssp ETTSSSBHHHHHHHHHHHT-SEEEEE
T ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEE
Confidence 45789999999999999999988764
No 227
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=27.01 E-value=92 Score=20.40 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=26.6
Q ss_pred cceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 33 KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 33 K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.+-+-+.+.+.+..++..+...++++|++-.....+.+.+++.
T Consensus 82 ~P~LLy~~~~~~~~~lrd~~~~~~~~Iivd~~~~~~~~~~~~~ 124 (271)
T PF10150_consen 82 APSLLYREPDLYERVLRDYLDEDVDEIIVDDKEIYEEIKEYLK 124 (271)
T ss_dssp STEEEE-STSHHHHHHHHH--TTEEEEEES-HHHHHHHHHHHH
T ss_pred CCeEEEeCCChhhHHHhhcCcCCCCEEEECCcHHHHHHHHHHH
Confidence 3555556778888888887777677777765455566666653
No 228
>PTZ00330 acetyltransferase; Provisional
Probab=26.93 E-value=1.1e+02 Score=16.95 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=21.2
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQM 70 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~ 70 (77)
+.++.++++.+.+.++..+++-++.....+
T Consensus 101 ~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~ 130 (147)
T PTZ00330 101 RALISDLCEIARSSGCYKVILDCTEDMVAF 130 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecChHHHHH
Confidence 668888999888888877777665433333
No 229
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=26.22 E-value=1.4e+02 Score=17.17 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=22.0
Q ss_pred CeeHHHHHHHHHHhcCC-CeEEEEccCCHHH
Q psy9166 40 NKPMLLHQIEALVEAGV-REVILAVSYRAEQ 69 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~-~~ivvv~~~~~~~ 69 (77)
|+.+++.+++.+.+.+. +.+.+.+..+++.
T Consensus 109 g~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~ 139 (177)
T COG0456 109 GRALLDEALERLRERGLADKIVLEVRESNEA 139 (177)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCChH
Confidence 45678888888888875 7888877765443
No 230
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=26.06 E-value=1.1e+02 Score=16.13 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
+...++.+.+.|. .++++++...+.+...++
T Consensus 29 ~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~~~ 59 (139)
T cd01427 29 VKEALKELKEKGI-KLALATNKSRREVLELLE 59 (139)
T ss_pred HHHHHHHHHHCCC-eEEEEeCchHHHHHHHHH
Confidence 4456677777765 577777766666655543
No 231
>PF06007 PhnJ: Phosphonate metabolism protein PhnJ; InterPro: IPR010306 This family consists of several bacterial phosphonate metabolism (PhnJ) sequences. The exact role that PhnJ plays in phosphonate utilisation is unknown.; GO: 0042916 alkylphosphonate transport
Probab=26.00 E-value=21 Score=23.55 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeH-HHHHHHHHHhcCC
Q psy9166 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPM-LLHQIEALVEAGV 56 (77)
Q Consensus 11 ~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~l-i~~~l~~l~~~~~ 56 (77)
-...++.||+-+|.-.......-.-+.|.+.|. .+..-..+..+|.
T Consensus 197 ~aL~LfGAGREkrIYAvPPyT~V~sL~FeD~pF~~e~~~~~C~~CGs 243 (277)
T PF06007_consen 197 PALQLFGAGREKRIYAVPPYTDVESLDFEDHPFEVERFDGPCALCGS 243 (277)
T ss_pred hhhhhhcCCcceeeeecCCCccccccCccCCCCccccccCcccccCC
Confidence 356778999999973332222223344556665 4433334444443
No 232
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=25.55 E-value=1.7e+02 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.-++.++.|.+.|++.|+.+.+.....+.+.+
T Consensus 4 ~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal 35 (549)
T PRK06457 4 VAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAI 35 (549)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcchHHHHHHH
Confidence 34677888888888888888776655555544
No 233
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.54 E-value=1.3e+02 Score=16.96 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEc
Q psy9166 43 MLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~ 63 (77)
-+..+++.+.++|+.++.+++
T Consensus 108 ~vv~vmd~~~~~G~~~v~l~t 128 (129)
T TIGR02801 108 EVIKVMALLKQAGIEKVGLIT 128 (129)
T ss_pred HHHHHHHHHHHcCCCeEEEee
Confidence 366778888888888887764
No 234
>PRK13201 ureB urease subunit beta; Reviewed
Probab=25.52 E-value=17 Score=21.57 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=17.9
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCeeH
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANKPM 43 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~~l 43 (77)
+.||.+.||.| ++...-.|.+++|...
T Consensus 63 IPAGTAVRFEP-G~~k~V~LV~igG~r~ 89 (136)
T PRK13201 63 IPAGAAVRFEP-GDKKEVQLVEYAGKRK 89 (136)
T ss_pred cCCCCeEeECC-CCeEEEEEEEccCceE
Confidence 46789999988 2233345778877543
No 235
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=25.44 E-value=1.6e+02 Score=21.14 Aligned_cols=34 Identities=24% Similarity=0.088 Sum_probs=25.9
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.+.-++.++.|.+.|++.|+.+.+.....+.+.+
T Consensus 16 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al 49 (571)
T PRK07710 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDAL 49 (571)
T ss_pred chHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 3457889999999999999998877655555544
No 236
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=25.09 E-value=1.9e+02 Score=20.78 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
=+..+++.+.+.|++++.++++.........
T Consensus 366 ~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i 396 (536)
T TIGR01512 366 DAAEAIAELKALGIEKVVMLTGDRRAVAERV 396 (536)
T ss_pred HHHHHHHHHHHcCCCcEEEEcCCCHHHHHHH
Confidence 3678899999999878999988765544443
No 237
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=24.93 E-value=59 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.456 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCCcceeeeCCeeH-H----HHHHHHHHhcCCC
Q psy9166 21 GTRLRPLTLSRPKPLVEFANKPM-L----LHQIEALVEAGVR 57 (77)
Q Consensus 21 ~~R~~~~t~~~~K~ll~i~g~~l-i----~~~l~~l~~~~~~ 57 (77)
|.--+...+..||.-+.|+|+++ + ..+++...+.|+.
T Consensus 56 ~~~~~~~~~~~~~~~I~IDGk~VeV~~~G~TILeAAr~~GI~ 97 (297)
T PTZ00305 56 GVAAGQYAEHKPRAIMFVNKRPVEIIPQEENLLEVLEREGIR 97 (297)
T ss_pred hhhccchhccCCceEEEECCEEEEecCCCChHHHHHHHcCCC
Confidence 33334444577899999999886 4 4777888888753
No 238
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=24.87 E-value=1.1e+02 Score=15.74 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
.++..++.+.+.+...+.|+++..
T Consensus 14 ~l~~~l~~~~~~~~~~~~II~G~G 37 (83)
T PF01713_consen 14 ALEEFLDEARQRGIRELRIITGKG 37 (83)
T ss_dssp HHHHHHHHHHHTTHSEEEEE--ST
T ss_pred HHHHHHHHHHHcCCCEEEEEeccC
Confidence 466777777777788998888765
No 239
>PRK13695 putative NTPase; Provisional
Probab=24.76 E-value=1.6e+02 Score=17.34 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=3.0
Q ss_pred eEEEEcc
Q psy9166 58 EVILAVS 64 (77)
Q Consensus 58 ~ivvv~~ 64 (77)
.++++++
T Consensus 128 ~~i~v~h 134 (174)
T PRK13695 128 PVIATLH 134 (174)
T ss_pred eEEEEEC
Confidence 4444444
No 240
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=24.71 E-value=2e+02 Score=19.70 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCCC--CCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 25 RPLTL--SRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 25 ~~~t~--~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+|+++ ....+++-+...++++-..+.+...|.++.+||-+.
T Consensus 181 GPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G~ 223 (338)
T COG0547 181 GPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHGL 223 (338)
T ss_pred ccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEECC
Confidence 55553 445666777778899999999999999999888774
No 241
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=24.70 E-value=2.2e+02 Score=18.90 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=27.9
Q ss_pred CcEEEEEeCCCCCCCCCCCCCCC-cceeeeCCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t~~~~-K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.-.+||+++|..+.- +.+ -.++. .+..++......+.+.+.+.++|+..
T Consensus 72 ~aDiViitag~p~~~-----~~~r~dl~~-~n~~i~~~~~~~i~~~~~~~~viv~~ 121 (309)
T cd05294 72 GSDIVIITAGVPRKE-----GMSRLDLAK-KNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred CCCEEEEecCCCCCC-----CCCHHHHHH-HHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 356788888864321 111 11221 34567788888887776665555544
No 242
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=24.47 E-value=1.5e+02 Score=18.79 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+.++.++++.+.+.|...+.+.+...
T Consensus 245 ~~ll~~~~~~~~~~g~~~v~l~v~~~ 270 (292)
T TIGR03448 245 DALTLIGLHHLAARGLPAVMLYVEAD 270 (292)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCC
Confidence 56788888888888888888776543
No 243
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.47 E-value=87 Score=18.80 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=19.8
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
..++..+++.+.+.|.++|.++++
T Consensus 77 ~~l~~~lve~lre~G~~~i~v~~G 100 (143)
T COG2185 77 LTLVPGLVEALREAGVEDILVVVG 100 (143)
T ss_pred HHHHHHHHHHHHHhCCcceEEeec
Confidence 567889999999999999986554
No 244
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.44 E-value=2e+02 Score=20.60 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=25.4
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.+.-++.++.|.+.|+++|+-+.+.....+.+.+
T Consensus 8 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al 41 (557)
T PRK08199 8 RTGGQILVDALRANGVERVFCVPGESYLAVLDAL 41 (557)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHh
Confidence 3456888899999999999988876655555544
No 245
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=24.40 E-value=1.4e+02 Score=16.67 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=20.0
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQ 69 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~ 69 (77)
..+++++++.+.+.++..+.+.+...+..
T Consensus 82 ~~ll~~~~~~~~~~~~~~~~~~~~~~N~~ 110 (146)
T PRK09491 82 RALLEHLIDELEKRGVATLWLEVRASNAA 110 (146)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEccCCHH
Confidence 45778888877777888887766544333
No 246
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=24.26 E-value=1.1e+02 Score=19.33 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.4
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
.-++++++.+.+.|+++|+.+..+.
T Consensus 86 ~~~e~il~k~tELGV~~i~p~~ser 110 (234)
T PRK11713 86 DRLELILQKATELGVSAIIPLISER 110 (234)
T ss_pred ccHHHHHHHHHHhCcCeEEEEEecc
Confidence 4699999999999999998887643
No 247
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=24.21 E-value=1.8e+02 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+..++.|.+.|++.|+-+.+.....+.+.+
T Consensus 3 ~~l~~~L~~~GV~~vFgvpG~~~~~l~dal 32 (575)
T TIGR02720 3 AAVLKVLEAWGVDHIYGIPGGSFNSTMDAL 32 (575)
T ss_pred HHHHHHHHHcCCCEEEECCCcchHHHHHHH
Confidence 355666777777777777666555444444
No 248
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=24.18 E-value=1.4e+02 Score=20.30 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=25.2
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~ 73 (77)
..++.+.++.+.+.|...+++.+......+.+.
T Consensus 69 ~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k 101 (332)
T TIGR00124 69 LQLMTELENLAYELGRFHLFIFTKPEYAALFEY 101 (332)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH
Confidence 457888888888889999999997655544443
No 249
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.12 E-value=1.1e+02 Score=21.92 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCC--CeEEEEc-cC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGV--REVILAV-SY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~--~~ivvv~-~~ 65 (77)
.+..++|+.||....-+ ..-+-++. .+..++......+...+. ..|+|+. |+
T Consensus 198 ~daDvvIitag~prk~G----~~R~DLL~-~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNP 252 (452)
T cd05295 198 KDAHVIVLLDDFLIKEG----EDLEGCIR-SRVAICQLYGPLIEKNAKEDVKVIVAGRTF 252 (452)
T ss_pred CCCCEEEECCCCCCCcC----CCHHHHHH-HHHHHHHHHHHHHHHhCCCCCeEEEEeCCc
Confidence 34567888888754322 11233333 356788888888888776 6666665 44
No 250
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=24.11 E-value=2e+02 Score=18.30 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCCeEEEEccCC--HHHHHHHHh
Q psy9166 44 LLHQIEALVEAGVREVILAVSYR--AEQMEDELL 75 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~--~~~~~~~~~ 75 (77)
|...+.++....+++|++.+++. .+....++.
T Consensus 124 i~~L~~Rl~~~~~~EvIlAtnpTvEGeaTA~YI~ 157 (198)
T COG0353 124 IDELLQRLAEGSIKEVILATNPTVEGEATALYIA 157 (198)
T ss_pred HHHHHHHHhcCCCceEEEecCCCccchHHHHHHH
Confidence 77888888877788999999863 455555553
No 251
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=24.10 E-value=2e+02 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMED 72 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~ 72 (77)
+-++.++.|.+.|++.|+-+.+.....+.+
T Consensus 2 ~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~ 31 (535)
T TIGR03394 2 LAEALLRALKDRGAQEMFGIPGDFALPFFK 31 (535)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccHHHHH
Confidence 345566666666666666666554333333
No 252
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=24.07 E-value=1.8e+02 Score=20.79 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=25.3
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
...-++.++.|.+.|+++++.+.+.....+.+.+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l 42 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAA 42 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHH
Confidence 3456788999999999999998887655554444
No 253
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=24.02 E-value=1.6e+02 Score=21.39 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=25.9
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
|+-+++++++.+.+.|...+.+.+..++.....+.
T Consensus 173 G~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY 207 (547)
T TIGR03103 173 GEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALY 207 (547)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHH
Confidence 36689999999999999999887766544444433
No 254
>PRK10200 putative racemase; Provisional
Probab=23.97 E-value=1.1e+02 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.7
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccC
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+.+...++.|.+.|++-+++.||-
T Consensus 62 ~~l~~~~~~L~~~g~~~iviaCNT 85 (230)
T PRK10200 62 DILAEAALGLQRAGAEGIVLCTNT 85 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEECCch
Confidence 457788888999999988888874
No 255
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.97 E-value=2e+02 Score=18.29 Aligned_cols=29 Identities=34% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 46 HQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 46 ~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.++..+.+.|+ +++++|++....+...++
T Consensus 31 ~ai~~l~~~Gi-~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 31 PWLTRLREAQV-PVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred HHHHHHHHcCC-eEEEEcCCCHHHHHHHHH
Confidence 45666666776 688888887666665543
No 256
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=23.94 E-value=1.4e+02 Score=18.67 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.1
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
.-++++++.+.+.|+++|+.+....
T Consensus 73 ~~~d~il~katELGv~~i~p~~s~r 97 (225)
T PF04452_consen 73 DRMDWILQKATELGVSRIIPVISER 97 (225)
T ss_dssp THHHHHHHHHHHTT-SEEEEEE-TT
T ss_pred ccHHHHHHHHHhcCCCEEEEEEeee
Confidence 5799999999999999998887644
No 257
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=23.79 E-value=1.8e+02 Score=17.67 Aligned_cols=29 Identities=34% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
..+++.+.+.|+ .++++++.....+...+
T Consensus 22 ~~~l~~l~~~gi-~~~i~TgR~~~~~~~~~ 50 (221)
T TIGR02463 22 APWLTRLQEAGI-PVILCTSKTAAEVEYLQ 50 (221)
T ss_pred HHHHHHHHHCCC-eEEEEcCCCHHHHHHHH
Confidence 355666666665 57777887766655544
No 258
>PRK07586 hypothetical protein; Validated
Probab=23.68 E-value=1.9e+02 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal 34 (514)
T PRK07586 4 AESLVRTLVDGGVDVCFANPGTSEMHFVAAL 34 (514)
T ss_pred HHHHHHHHHHCCCCEEEECCCCchHHHHHHH
Confidence 3566777777777777777666544444444
No 259
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=23.65 E-value=1.8e+02 Score=20.89 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=25.7
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-+..++.|.+.|++.|+-+.+.....+.+.+
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal 46 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDAL 46 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHH
Confidence 457888888999999999998887666665555
No 260
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=23.49 E-value=1.9e+02 Score=20.95 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.-+..++.|.+.|++.++-+.+.....+.+.+
T Consensus 5 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal 36 (578)
T PRK06546 5 VAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAV 36 (578)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCchHHHHHHH
Confidence 35667777777777777777766555555544
No 261
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=23.34 E-value=31 Score=20.84 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCCCCCCCCCC-CcceeeeCCeeHHHHHHHHHHhc
Q psy9166 12 KALILVGGYGTRLRPLTLSR-PKPLVEFANKPMLLHQIEALVEA 54 (77)
Q Consensus 12 ~~vIlaaG~~~R~~~~t~~~-~K~ll~i~g~~li~~~l~~l~~~ 54 (77)
++|+|++|..+|+.-+.... ....+.++=-.++++=.+.+.+.
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPES 124 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhC
Confidence 89999999999974433221 34556665444565555555544
No 262
>PF14266 DUF4356: Domain of unknown function (DUF4356)
Probab=23.08 E-value=1.5e+02 Score=21.34 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCCCcceeeeCCeeHH---HHH-HHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 28 TLSRPKPLVEFANKPML---LHQ-IEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 28 t~~~~K~ll~i~g~~li---~~~-l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
++..||-.+--.++..+ +-. +.-+...|+ +|++.++.....+..++.+
T Consensus 406 ~~~vPKii~y~~~~~~~s~ed~i~l~fln~~G~-DIvif~PtG~~~iE~~i~~ 457 (488)
T PF14266_consen 406 PQEVPKIIIYNNNENEFSREDAILLAFLNLIGF-DIVIFNPTGYNDIENYINE 457 (488)
T ss_pred CCCCCeEEEEeCCCCcCCHHHHHHHHHHHHhCe-eEEEECCCCcchHHHhhhh
Confidence 45788887766665543 233 333455677 5888888888888887754
No 263
>PRK11024 colicin uptake protein TolR; Provisional
Probab=23.06 E-value=1.6e+02 Score=17.05 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcc
Q psy9166 44 LLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~ 64 (77)
+-.+++.+.++|+.++.+++.
T Consensus 119 vv~vmd~~k~aG~~~v~l~t~ 139 (141)
T PRK11024 119 IIKALNLLHSAGVKSVGLMTQ 139 (141)
T ss_pred HHHHHHHHHHcCCCeEEEEec
Confidence 667778888888888877653
No 264
>PTZ00188 adrenodoxin reductase; Provisional
Probab=22.85 E-value=1.5e+02 Score=21.58 Aligned_cols=22 Identities=0% Similarity=0.108 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCC
Q psy9166 45 LHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
+++++.|.++++++|+|+....
T Consensus 230 ~~aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 230 SDYLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred HHHHHHHHhCCCcEEEEEEecC
Confidence 6788899999999999998754
No 265
>PRK11269 glyoxylate carboligase; Provisional
Probab=22.79 E-value=1.9e+02 Score=20.94 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=24.1
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 5 ~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal 37 (591)
T PRK11269 5 RAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAM 37 (591)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHH
Confidence 456788888888888888888776655555544
No 266
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=22.74 E-value=1.2e+02 Score=20.12 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCeEEEE
Q psy9166 43 MLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv 62 (77)
+=.|+++.|.++|+.++.++
T Consensus 41 VGSw~veALaRsGig~itlI 60 (263)
T COG1179 41 VGSWAVEALARSGIGRITLI 60 (263)
T ss_pred hhHHHHHHHHHcCCCeEEEE
Confidence 34799999999999998776
No 267
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=22.65 E-value=2e+02 Score=20.47 Aligned_cols=31 Identities=23% Similarity=0.095 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
-++.++.|.+.|++.|+.+.+.....+.+.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al 34 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYPGGAIMPVYDAL 34 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 4567777777888888777766544444443
No 268
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=22.62 E-value=80 Score=17.56 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCCeEEEEcc
Q psy9166 44 LLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~ 64 (77)
+..+++.+.++|+.++.+++.
T Consensus 108 vv~vl~~l~~~g~~~v~l~t~ 128 (130)
T PF02472_consen 108 VVDVLDALREAGFTKVSLATE 128 (130)
T ss_dssp HHHHHHHHHHTT---EE-TT-
T ss_pred HHHHHHHHHHcCCCEEEEEEe
Confidence 566777777777777766653
No 269
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=22.58 E-value=2.3e+02 Score=19.08 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcC-CCeEEEEcc
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~-~~~ivvv~~ 64 (77)
.+...||+.||....-+ .....++. .+..++......+...+ .+-+++++.
T Consensus 74 ~~aDiVVitAG~~~~~~----~tr~~ll~-~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 74 TDVDVAILVGAFPRKEG----MERRDLLS-KNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred CCCCEEEEcCCCCCCCC----CcHHHHHH-HHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 34567888888654321 11122222 45677888888888773 665555443
No 270
>PRK07524 hypothetical protein; Provisional
Probab=22.57 E-value=1.9e+02 Score=20.51 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 4 ~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal 35 (535)
T PRK07524 4 CGEALVRLLEAYGVETVFGIPGVHTVELYRGL 35 (535)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 34677777777888888777765544444433
No 271
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=22.55 E-value=1.8e+02 Score=19.53 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCC-e-EEEEccC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVR-E-VILAVSY 65 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~-~-ivvv~~~ 65 (77)
.+-..||++||....-+ .....++. .+..++......+...+.+ - +++++|+
T Consensus 59 ~daDiVVitaG~~~k~g----~tR~dll~-~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 59 KDIDCAFLVASVPLKPG----EVRADLLT-KNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred CCCCEEEECCCCCCCcC----CCHHHHHH-HHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 34567888888643321 11122222 3567888888899888744 3 4445544
No 272
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=22.52 E-value=1.9e+02 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
-+++++.|.+.|++.|+.+.+.....+.+.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l 34 (558)
T TIGR00118 4 AEAIIESLKDEGVKTVFGYPGGAILPIYDAL 34 (558)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHh
Confidence 3566777777777777777665544444444
No 273
>PRK08266 hypothetical protein; Provisional
Probab=22.37 E-value=2e+02 Score=20.41 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=23.3
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-+..++.|.+.|++.|+.+.+.....+.+.+
T Consensus 5 ~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al 37 (542)
T PRK08266 5 TGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDAL 37 (542)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCcchHHHHHHH
Confidence 345778888888888888888776555554444
No 274
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.12 E-value=1.6e+02 Score=16.52 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEc
Q psy9166 43 MLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~ 63 (77)
-+-.+++.+.++|+.++-+++
T Consensus 99 ~vv~v~d~~~~~G~~~v~l~t 119 (121)
T TIGR02804 99 DFVTITDMLKAKEHENVQIVS 119 (121)
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 367888888889998887765
No 275
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=22.07 E-value=1.2e+02 Score=15.98 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=19.0
Q ss_pred CCeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 39 ANKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~~ivvv 62 (77)
-.+..+..+++.|.++|.+.|+++
T Consensus 47 V~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 47 VPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EECCCHHHHHHHHHCTT-EEEEEE
T ss_pred ecHHHHHHHHHHHHHcCCCEEEEE
Confidence 345678999999999999888775
No 276
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.05 E-value=2.3e+02 Score=18.92 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
..+..|++.++.|-|+.. + ...+.+-.-+...+..+.+.++..|.|++++-
T Consensus 154 ~~lPlV~l~dSgGaRmqE---g----~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt 204 (285)
T TIGR00515 154 DNCPLIIFSASGGARMQE---A----LLSLMQMAKTSAALAKMSERGLPYISVLTDPT 204 (285)
T ss_pred cCCCEEEEEcCCCccccc---c----hhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 346678888888888832 1 11121222234455666667788898888753
No 277
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.98 E-value=1.9e+02 Score=19.00 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=23.6
Q ss_pred CcceeeeCCeeHHHHHHHHHHhcCCCeEEE
Q psy9166 32 PKPLVEFANKPMLLHQIEALVEAGVREVIL 61 (77)
Q Consensus 32 ~K~ll~i~g~~li~~~l~~l~~~~~~~ivv 61 (77)
|-....+.|-|.++.+++.+.+.+++++.+
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L 198 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHL 198 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEE
Confidence 444556678899999999999999887643
No 278
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=21.91 E-value=1.6e+02 Score=16.30 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
=+..+++.+.+.|+ +++|+++..
T Consensus 29 ~v~~~l~~L~~~g~-~l~i~Sn~~ 51 (132)
T TIGR01662 29 EVPDALAELKEAGY-KVVIVTNQS 51 (132)
T ss_pred CHHHHHHHHHHCCC-EEEEEECCc
Confidence 35567777777765 466666654
No 279
>PRK12474 hypothetical protein; Provisional
Probab=21.86 E-value=2.2e+02 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.-++.++.|.+.|++.|+-+.+...-.+.+.+
T Consensus 7 ~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal 38 (518)
T PRK12474 7 GADSVVDTLLNCGVEVCFANPGTSEMHFVAAL 38 (518)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcchHHHHHHh
Confidence 36788888888888888888776554454444
No 280
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=21.85 E-value=2.5e+02 Score=20.21 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=21.6
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 4 ~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal 36 (574)
T PRK09124 4 TVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSL 36 (574)
T ss_pred cHHHHHHHHHHHcCCCEEEECCCCchHHHHHHH
Confidence 345677777777788877777766554444444
No 281
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=21.66 E-value=47 Score=22.22 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCCCCCCC--------CCC----Ccceee-------e------CCeeHHHHHHHHHHhcCCCeEEEEcc
Q psy9166 10 NMKALILVGGYGTRLRPLT--------LSR----PKPLVE-------F------ANKPMLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 10 ~~~~vIlaaG~~~R~~~~t--------~~~----~K~ll~-------i------~g~~li~~~l~~l~~~~~~~ivvv~~ 64 (77)
+-.-|++|.|.++||...- ++. .-++.- + .|+.=++.+++.+...|+.++-++..
T Consensus 29 ~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~~~~GLIAa 108 (294)
T PF02273_consen 29 RNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIGKASLLTVIDWLATRGIRRIGLIAA 108 (294)
T ss_dssp -S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred cCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHhHHHHHHHHHHHHhcCCCcchhhhh
Confidence 3467999999999995421 110 000000 1 12223677888888889888877765
Q ss_pred CC
Q psy9166 65 YR 66 (77)
Q Consensus 65 ~~ 66 (77)
.-
T Consensus 109 SL 110 (294)
T PF02273_consen 109 SL 110 (294)
T ss_dssp TT
T ss_pred hh
Confidence 44
No 282
>PRK10976 putative hydrolase; Provisional
Probab=21.59 E-value=2.2e+02 Score=17.86 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
..++..+.+.|+ .++++|++....+...+
T Consensus 25 ~~ai~~l~~~G~-~~~iaTGR~~~~~~~~~ 53 (266)
T PRK10976 25 KETLKLLTARGI-HFVFATGRHHVDVGQIR 53 (266)
T ss_pred HHHHHHHHHCCC-EEEEEcCCChHHHHHHH
Confidence 455666666665 57777887665555544
No 283
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=21.56 E-value=2.3e+02 Score=17.95 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..++..+.+.|+ .++++|++....+...++
T Consensus 25 ~~ai~~l~~~G~-~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 25 LSTLARLRERDI-TLTFATGRHVLEMQHILG 54 (272)
T ss_pred HHHHHHHHHCCC-EEEEECCCCHHHHHHHHH
Confidence 455666666664 578888877666665553
No 284
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.47 E-value=2.8e+02 Score=19.00 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEc
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAV 63 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~ 63 (77)
..|-+...++.+...|.++|+|+-
T Consensus 48 ~ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 48 AEPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEec
Confidence 468999999999999999887763
No 285
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=21.45 E-value=1.2e+02 Score=21.20 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=19.2
Q ss_pred CeeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 40 NKPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 40 g~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
||+.+...+.+-.++++ -|++.+++...++.+.++
T Consensus 169 GKT~L~~~Iak~~~~dv-vVyv~iGERg~Ev~e~l~ 203 (369)
T cd01134 169 GKTVIQQSLSKYSNSDI-VIYVGCGERGNEMTEVLE 203 (369)
T ss_pred ChHHHHHHHHhCCCCCE-EEEEEeCCChHHHHHHHH
Confidence 57777766555333322 234556676666655554
No 286
>TIGR00035 asp_race aspartate racemase.
Probab=21.38 E-value=2e+02 Score=18.00 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEccC
Q psy9166 43 MLLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~ 65 (77)
.+...++.+.+.|++-+++.|+-
T Consensus 63 ~l~~~~~~L~~~g~d~iviaCNT 85 (229)
T TIGR00035 63 ILIDIAVKLENAGADFIIMPCNT 85 (229)
T ss_pred HHHHHHHHHHHcCCCEEEECCcc
Confidence 46677777888899988888874
No 287
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=21.31 E-value=2.2e+02 Score=17.78 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 45 LHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 45 ~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
..++..+.+.|+ .++++|++....+...++
T Consensus 26 ~~ai~~~~~~G~-~~~iaTGR~~~~~~~~~~ 55 (272)
T PRK10530 26 LEALARAREAGY-KVIIVTGRHHVAIHPFYQ 55 (272)
T ss_pred HHHHHHHHHCCC-EEEEEcCCChHHHHHHHH
Confidence 355666667775 688888877666655543
No 288
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.20 E-value=1.8e+02 Score=16.64 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCeeHHHHHHHHHHhcCCC--eEEEEc
Q psy9166 39 ANKPMLLHQIEALVEAGVR--EVILAV 63 (77)
Q Consensus 39 ~g~~li~~~l~~l~~~~~~--~ivvv~ 63 (77)
+....++.+++++.+.... +|+|+-
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~evivvD 34 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVID 34 (202)
T ss_pred chHHHHHHHHHHHHhCCCCCceEEEEe
Confidence 3345678888888765433 455553
No 289
>PRK08617 acetolactate synthase; Reviewed
Probab=21.12 E-value=2.3e+02 Score=20.22 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.6
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-+..++.|.+.|++.|+.+.+.....+.+.+
T Consensus 6 ~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al 38 (552)
T PRK08617 6 YGADLVVDSLINQGVKYVFGIPGAKIDRVFDAL 38 (552)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence 346778888888888888888776655555444
No 290
>PRK13204 ureB urease subunit beta; Reviewed
Probab=21.12 E-value=25 Score=21.45 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.5
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCe
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANK 41 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~ 41 (77)
+.||.+.||.| ++...-.|.+++|.
T Consensus 86 IPAGTAVRFEP-G~~k~V~LV~~gG~ 110 (159)
T PRK13204 86 IPANTAVRFEP-GDEKEVTLVPFAGK 110 (159)
T ss_pred cCCCCeEeECC-CCeeEEEEEEccCc
Confidence 46788899987 22233356676654
No 291
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=20.95 E-value=1.8e+02 Score=16.91 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEcc
Q psy9166 43 MLLHQIEALVEAGVREVILAVS 64 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~ 64 (77)
.+..+++.+.++|+.+|.+++.
T Consensus 114 ~vv~vmd~l~~aG~~~v~l~t~ 135 (141)
T PRK11267 114 TLMKVMDTLHQAGYLKIGLVGE 135 (141)
T ss_pred HHHHHHHHHHHcCCCeEEEEec
Confidence 3778899999999999988773
No 292
>PRK08611 pyruvate oxidase; Provisional
Probab=20.92 E-value=2.3e+02 Score=20.43 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=23.7
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
+.-++.++.|.+.|++.++-+.+.....+.+.+
T Consensus 5 ~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal 37 (576)
T PRK08611 5 KAGEALVKLLQDWGIDHVYGIPGDSIDAVVDAL 37 (576)
T ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHHH
Confidence 346778888888888888888776655555554
No 293
>PF12163 HobA: DNA replication regulator; InterPro: IPR021011 This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The crystal structure of HobA from Helicobacter pylori has been reported at 1.7A resolution; HobA represents a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The closest structural homologue of HobA is a sugar isomerase (SIS) domain containing protein, the phosphoheptose isomerase from Pseudomonas aeruginosa. The SIS proteins share strong sequence homology with DiaA from Escherichia coli; yet, HobA and DiaA share no sequence homology []. HobA is a novel protein essential for initiation of H. pylori chromosome replication. It interacts specifically via DnaA with the oriC-DnaA complex. It is possible that HobA is essential for the correct formation and stabilisation of the orisome by facilitating the spatial positioning of DnaA at oriC [].; PDB: 2UVP_D 2WP0_A.
Probab=20.81 E-value=2.3e+02 Score=17.76 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=22.4
Q ss_pred eeHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHHh
Q psy9166 41 KPMLLHQIEALVEAGVREVILAVSYRAEQMEDELL 75 (77)
Q Consensus 41 ~~li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~ 75 (77)
.|++..+++.+.+- ..++|+|.++.+.+.+++-
T Consensus 30 ~pl~a~~l~~il~G--~s~iliTD~~R~WF~~Yil 62 (180)
T PF12163_consen 30 TPLIASALSHILNG--GSFILITDEEREWFEEYIL 62 (180)
T ss_dssp HHHHHHHHHHHHTT---EEEEEE-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CeEEEEeCchhHHHHHHHH
Confidence 47777888887763 4677888887777777653
No 294
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=20.67 E-value=1.6e+02 Score=18.69 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.3
Q ss_pred eHHHHHHHHHHhcCCCeEEEEccCC
Q psy9166 42 PMLLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 42 ~li~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
.-++++++.+.+.|++.|+.+....
T Consensus 88 ~~~d~il~katELGv~~i~p~~s~r 112 (240)
T TIGR00046 88 KKMEFIIRKLTELGVSKIIPFNAER 112 (240)
T ss_pred ccHHHHHHHHHHcCCCEEEEEEecc
Confidence 4799999999999999998876543
No 295
>PRK13198 ureB urease subunit beta; Reviewed
Probab=20.59 E-value=26 Score=21.33 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=16.8
Q ss_pred EeCCCCCCCCCCCCCCCcceeeeCCee
Q psy9166 16 LVGGYGTRLRPLTLSRPKPLVEFANKP 42 (77)
Q Consensus 16 laaG~~~R~~~~t~~~~K~ll~i~g~~ 42 (77)
+.||.+.||.| ++..--.|.+++|..
T Consensus 91 IPAGTAVRFEP-G~~k~V~LV~~gG~r 116 (158)
T PRK13198 91 ISSTTAIRFEP-GDETEVPLIPFGGKQ 116 (158)
T ss_pred cCCCCeEeeCC-CCeeEEEEEEccCce
Confidence 46788999988 223334577777653
No 296
>KOG2882|consensus
Probab=20.59 E-value=1.7e+02 Score=19.90 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCeEEEEccCCH
Q psy9166 44 LLHQIEALVEAGVREVILAVSYRA 67 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~~ 67 (77)
.-.+++.+.+.| ++++++++...
T Consensus 43 s~e~l~~L~~~g-K~i~fvTNNSt 65 (306)
T KOG2882|consen 43 SPEALNLLKSLG-KQIIFVTNNST 65 (306)
T ss_pred hHHHHHHHHHcC-CcEEEEeCCCc
Confidence 556778888887 88999888643
No 297
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=20.53 E-value=1.9e+02 Score=16.98 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCCeEEEEccC
Q psy9166 44 LLHQIEALVEAGVREVILAVSY 65 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~ 65 (77)
+-.+++.+.++|++++-+++..
T Consensus 113 vv~vm~~l~~aG~~~v~L~t~~ 134 (137)
T COG0848 113 VVKVMDLLKEAGFKKVGLVTEK 134 (137)
T ss_pred HHHHHHHHHHcCCceEEEEecC
Confidence 5567777777888888777654
No 298
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=20.40 E-value=2.2e+02 Score=17.44 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=22.3
Q ss_pred CeeH--HHHHHHHHHhcCCCeEEEEccCCHHHHHHHHhc
Q psy9166 40 NKPM--LLHQIEALVEAGVREVILAVSYRAEQMEDELLL 76 (77)
Q Consensus 40 g~~l--i~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~~~ 76 (77)
||+. ++++.+.+.+.|-+-+++.+.+..+++.+.+.+
T Consensus 31 GKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s 69 (226)
T PF06745_consen 31 GKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS 69 (226)
T ss_dssp SHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT
T ss_pred CcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH
Confidence 5665 345666666646666777777777777776653
No 299
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=20.38 E-value=2.1e+02 Score=17.08 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCC-C---eEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGV-R---EVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~-~---~ivvv~~~~~~~~~~~~ 74 (77)
++..+++++.+... . +++|+-+...+...+.+
T Consensus 16 ~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~ 51 (234)
T cd06421 16 IVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA 51 (234)
T ss_pred HHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH
Confidence 57788888876542 2 56666554444444333
No 300
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=20.25 E-value=2.9e+02 Score=18.67 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=29.4
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCcceeeeCCeeHHHHHHHHHH-hcCCCeEEEEccCC
Q psy9166 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALV-EAGVREVILAVSYR 66 (77)
Q Consensus 9 ~~~~~vIlaaG~~~R~~~~t~~~~K~ll~i~g~~li~~~l~~l~-~~~~~~ivvv~~~~ 66 (77)
..+..|++.++.|.||.. ....+.+..-+...+..+. +.++..|.+++++-
T Consensus 167 ~rlPlV~l~~SGGARmQE-------g~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt 218 (296)
T CHL00174 167 ESLPLIIVCASGGARMQE-------GSLSLMQMAKISSALYDYQSNKKLFYISILTSPT 218 (296)
T ss_pred cCCCEEEEECCCCccccc-------cchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 346688999999999932 1122223222333344434 34588888887653
No 301
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=20.09 E-value=2.8e+02 Score=20.12 Aligned_cols=32 Identities=25% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCCHHHHHHHH
Q psy9166 43 MLLHQIEALVEAGVREVILAVSYRAEQMEDEL 74 (77)
Q Consensus 43 li~~~l~~l~~~~~~~ivvv~~~~~~~~~~~~ 74 (77)
.-++.++.|.+.|++.|+-+.+.....+.+.+
T Consensus 5 ~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal 36 (597)
T PRK08273 5 VADFILERLREWGVRRVFGYPGDGINGLLGAL 36 (597)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCchHHHHHHH
Confidence 45677888888888888888776655555444
No 302
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=20.07 E-value=1.8e+02 Score=16.15 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=21.3
Q ss_pred eeCCeeHHHHHHHHHHhcCCCeEEEE
Q psy9166 37 EFANKPMLLHQIEALVEAGVREVILA 62 (77)
Q Consensus 37 ~i~g~~li~~~l~~l~~~~~~~ivvv 62 (77)
-+-.+..+..+++.|.++|.+.|.+.
T Consensus 69 ~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 69 AVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred EEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33466789999999999999988875
No 303
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=20.05 E-value=71 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=14.8
Q ss_pred eCCCCCCCCCCCCCCCcceeee
Q psy9166 17 VGGYGTRLRPLTLSRPKPLVEF 38 (77)
Q Consensus 17 aaG~~~R~~~~t~~~~K~ll~i 38 (77)
|||.|+|+...+ ..-|.|.++
T Consensus 1 aGG~SrRlP~~s-~~GK~Ft~l 21 (414)
T PF07959_consen 1 AGGYSRRLPNYS-ACGKAFTPL 21 (414)
T ss_pred CCCccccCCccc-cccceeecc
Confidence 789999996544 344777655
No 304
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.02 E-value=1.5e+02 Score=17.33 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEEEccCC
Q psy9166 44 LLHQIEALVEAGVREVILAVSYR 66 (77)
Q Consensus 44 i~~~l~~l~~~~~~~ivvv~~~~ 66 (77)
++..|+.+.+.|++..+|+.+-+
T Consensus 38 l~l~L~~~k~~g~~~lfVi~PvN 60 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQPVN 60 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE----
T ss_pred HHHHHHHHHHcCCceEEEecCCc
Confidence 67899999999998888877643
Done!