RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9166
(77 letters)
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase)
catalyzes the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan
and various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 137 bits (348), Expect = 9e-43
Identities = 49/64 (76%), Positives = 55/64 (85%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MKALILVGGYGTRLRPLTL+ PKPLVEF NKPM+ HQIEAL +AGV+E+ILAV+YR E M
Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 71 EDEL 74
L
Sbjct: 61 VPFL 64
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 105 bits (265), Expect = 3e-29
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
MKA+IL GGYGTRLRPLT RPKPL+ A KP++ + +EAL AGV E++L V Y EQ
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQ 60
Query: 70 MEDELL 75
+E+
Sbjct: 61 IEEYFG 66
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer
of nucleotides onto phosphosugars.
Nucleotidyltransferases transfer nucleotides onto
phosphosugars. The enzyme family includes
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase. The products
are activated sugars that are precursors for synthesis
of lipopolysaccharide, glycolipids and polysaccharides.
Length = 217
Score = 98.4 bits (246), Expect = 1e-27
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTRLRPLT +RPKPL+ A KP+L + IE L AG+ E+IL V Y EQ+E+
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 73 EL 74
Sbjct: 61 YF 62
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a
member of the nucleotidyl transferase family. This is
a subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 89.6 bits (223), Expect = 4e-24
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
KA+IL G GTR+RPLT +RPKPLV A KP++ H ++ L AG+R +++ + A+Q+E
Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 72 DEL 74
L
Sbjct: 61 AHL 63
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of
dTDP-L-rhamnose, a cell wall constituent and a feedback
inhibitor of the enzyme.There are two forms of
Glucose-1-phosphate thymidylyltransferase in bacteria
and archeae; short form and long form. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which
dTDP-L-rhamnose is not necessarily produced.The long
from enzymes also have a left-handed parallel helix
domain at the c-terminus, whereas, th eshort form
enzymes do not have this domain. The homotetrameric,
feedback inhibited short form is found in numerous
bacterial species that produce dTDP-L-rhamnose.
Length = 236
Score = 88.8 bits (221), Expect = 1e-23
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK LIL GG GTRLRPLT +RPK L+ A KP++ + IE L EAG+ ++ + V E++
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 71 EDEL 74
++ L
Sbjct: 61 KEAL 64
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. The MJ_1101 protein from
Methanococcus jannaschii has been characterized as the
GlmU enzyme catalyzing the final two steps of
UDP-GlcNAc biosynthesis. Many of the genes identified
by this model are in proximity to the GlmS and GlmM
genes and are also presumed to be GlmU. However, some
archaeal genomes contain multiple closely-related
homologs from this family and it is not clear what the
substrate specificity is for each of them.
Length = 393
Score = 88.4 bits (220), Expect = 1e-22
Identities = 31/62 (50%), Positives = 44/62 (70%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MKA+IL G GTR+RPLT +RPKP++ A KP+L H IEAL +AG+ + + V Y E++
Sbjct: 1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 71 ED 72
+
Sbjct: 61 RE 62
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 82.6 bits (205), Expect = 6e-21
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRLRPLT PK L+ +KPM+ + +E L+ AG+R++++ V +
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 71 EDELL 75
ELL
Sbjct: 61 FKELL 65
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 81.1 bits (201), Expect = 9e-21
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL GG GTRLR + PKPL A +P L + +E L G+ ++L+V Y AEQ+E+
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In
addition cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a
key enzyme in the prokaryotic choline metabolism
pathway. It has been hypothesized to consist of a
choline transport system, a choline kinase,
CTP:phosphocholine cytidylyltransferase, and a choline
phosphotransferase that transfers P-Cho from CDP-Cho to
either lipoteichoic acid or lipopolysaccharide.
Length = 229
Score = 80.4 bits (199), Expect = 2e-20
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G G+RLRPLT RPK L+E KP+L QIE L EAG+ ++++ Y+ EQ+E+
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 73 EL 74
L
Sbjct: 61 LL 62
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. The family of known and putative
glucose-1-phosphate thymidyltransferase (also called
dTDP-glucose synthase) shows a deep split into a short
form (see TIGR01207) and a long form described by this
model. The homotetrameric short form is found in
numerous bacterial species that incorporate
dTDP-L-rhamnose, which it helps synthesize, into the
cell wall. It is subject to feedback inhibition. This
form, in contrast, is found in many species for which
it serves as a sugar-activating enzyme for antibiotic
biosynthesis and or other, unknown pathways, and in
which dTDP-L-rhamnose is not necessarily produced.
Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 81.3 bits (201), Expect = 4e-20
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65
KALIL G GTRLRPLT +RPK L+ ANKP+L + IE L EAG+ ++ + V
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGP 54
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 76.1 bits (188), Expect = 1e-18
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANK-PMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+IL GG GTRL PLT + KPLV +K PM+ + + L+ AG+RE I+ + +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 71 EDELL 75
E L
Sbjct: 61 VAEQL 65
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a
member of the nucleotidyl transferase family. This is
a subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 73.3 bits (181), Expect = 7e-18
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
+I+ GG GTRLRPLT + PKP+++ KP+L I+ + G R ++V+Y AE +ED
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60
>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved
in choline phosphorylation for cell surface LPS
epitopes [Cell envelope biogenesis, outer membrane].
Length = 231
Score = 71.7 bits (176), Expect = 3e-17
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
M A+IL G G+R PLT S PK L++ +P++ QIE L EAG+ ++ + V Y EQ
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF 60
Query: 71 E 71
E
Sbjct: 61 E 61
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma,
subunits of eukaryotic translation initiators, is a
subfamily of glycosyltranferase 2 and is predicted to
have glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes
such as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity
of eIF2B-epsilon leading to the idea that these
subunits form the catalytic subcomplex.
Length = 216
Score = 66.5 bits (163), Expect = 2e-15
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+A++L G+G+R PLT PK L+ AN P++ + +E L +AGV EV + ++ +
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 71 EDELL 75
+ LL
Sbjct: 61 IEHLL 65
>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 63.9 bits (156), Expect = 3e-14
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVRE-VILAVSYRAEQ 69
MKA+IL G+G+RL P PK LVE + ++ IE L +AG+ E V++ YRA+
Sbjct: 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60
Query: 70 MEDEL 74
+E+ L
Sbjct: 61 VEEFL 65
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a
isoform of GDP-mannose pyrophosphorylase. N-terminal
domain of the M1P-guanylyltransferase A-isoform like
proteins: The proteins of this family are likely to be
a isoform of GDP-mannose pyrophosphorylase. Their
sequences are highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase)
catalyzes the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective
cell wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 63.8 bits (156), Expect = 5e-14
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 13 ALILVGG--YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVE-AGVREVILAVSYRAEQ 69
A+ILVGG GTR RPL+L PKPL A KPM+ H IEA + ++EV+L Y
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 70 MEDEL 74
D +
Sbjct: 61 FSDFI 65
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four
of the five naturally occurring 3,6-dideoxy
sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety
of biological processes, including cell adhesion,
immune response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 59.5 bits (145), Expect = 2e-12
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+IL GG GTRL T +PKP+VE +P+L H ++ G + IL + Y+
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGH 56
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate
cytidylyltransferase. Members of this family are the
enzyme glucose-1-phosphate cytidylyltransferase, also
called CDP-glucose pyrophosphorylase, the product of
the rfbF gene [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 254
Score = 57.5 bits (139), Expect = 1e-11
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
KA+IL GG GTR+ T RPKP+VE KP+L H ++ G+ + I+ Y+ ++
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60
Query: 72 D 72
+
Sbjct: 61 E 61
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of
dTDP-L-rhamnose, a cell wall constituent and a feedback
inhibitor of the enzyme.There are two forms of
Glucose-1-phosphate thymidylyltransferase in bacteria
and archeae; short form and long form. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose. The long form, which has an extra 50
amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.
Length = 240
Score = 57.2 bits (139), Expect = 1e-11
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRL PLT K L+ +KPM+ + + L+ AG+RE IL +S E +
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIISTP-EDL 58
Query: 71 ED--ELL 75
ELL
Sbjct: 59 PLFKELL 65
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 55.4 bits (134), Expect = 4e-11
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
+A+IL GG G+RL PLT + PK L+ ANKPM+ + ++ L +AG +VI+ V
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVP 54
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon
subunit of the eIF-2B is a subfamily of
glycosyltransferase 2. N-terminal domain of epsilon
subunit of the eukaryotic translation initiation factor
2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange
factor which mediates the exchange of GDP (bound to
initiation factor eIF2) for GTP, generating active
eIF2.GTP complex. EIF2B is a complex multimeric protein
consisting of five subunits named alpha, beta, gamma,
delta and epsilon. Subunit epsilon shares sequence
similarity with gamma subunit, and with a family of
bifunctional nucleotide-binding enzymes such as
ADP-glucose pyrophosphorylase, suggesting that epsilon
subunit may play roles in nucleotide binding activity.
In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 217
Score = 54.9 bits (133), Expect = 6e-11
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A++L + R RPLT +P+ L+ AN P++ + +E L GV EV + ++Q+++
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKE 62
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 54.5 bits (132), Expect = 1e-10
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+I G GTR P T + PK ++ +KP++ + +E V AG+ ++I+ +
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 71 ED 72
ED
Sbjct: 61 ED 62
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU.
The N-terminal domain of
N-Acetylglucosamine-1-phosphate uridyltransferase
(GlmU). GlmU is an essential bacterial enzyme with both
an acetyltransferase and an uridyltransferase activity
which have been mapped to the C-terminal and N-terminal
domains, respectively. This family represents the
N-terminal uridyltransferase. GlmU performs the last
two steps in the synthesis of UDP-N-acetylglucosamine
(UDP-GlcNAc), which is an essential precursor in both
the peptidoglycan and the lipopolysaccharide metabolic
pathways in Gram-positive and Gram-negative bacteria,
respectively.
Length = 229
Score = 49.8 bits (120), Expect = 6e-09
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTR++ PK L A KPML H ++A G +++ V + AEQ++
Sbjct: 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKK 57
Query: 73 EL 74
L
Sbjct: 58 AL 59
>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 48.7 bits (117), Expect = 2e-08
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
++ A+IL G GTR++ PK L A KPML H I+A G ++++ V + AEQ
Sbjct: 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQ 58
Query: 70 MEDEL 74
+ + L
Sbjct: 59 VREAL 63
>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 260
Score = 48.5 bits (116), Expect = 2e-08
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KA+I G GTR P T + PK ++ +KP++ + +E VEAG+ ++++ +
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 71 ED 72
ED
Sbjct: 61 ED 62
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 47.5 bits (114), Expect = 5e-08
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 11 MKALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVILAVS 64
KA+I G GTR P T + PK P+V +KP++ + +E V AG+ E+++
Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVAAGIEEILIVTG 58
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 46.8 bits (112), Expect = 5e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G +R+ K L+ KP+L H ++A + AG+ VI+ + A+ +
Sbjct: 3 AIILAAGRSSRMG-----GNKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57
Query: 73 ELLLH 77
L
Sbjct: 58 ALAGL 62
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. Alternate name: dTDP-D-glucose synthase
homotetramer This model describes a tightly conserved
but broadly distributed subfamily (here designated as
short form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of
dTDP-L-rhamnose, a cell wall constituent and a feedback
inhibitor of the enzyme [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 286
Score = 47.4 bits (113), Expect = 6e-08
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
K +IL GG GTRL P+T + K L+ +KPM+ + + L+ AG+R++++
Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 50
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase
RfbA; Provisional.
Length = 292
Score = 47.0 bits (111), Expect = 6e-08
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
K +IL GG GTRL P+T++ K L+ +KPM+ + + L+ AG+R++++
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILI 54
>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis,
LPS biosynthesis in species with LPS, and certain other
processes [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides, Central intermediary
metabolism, Amino sugars].
Length = 451
Score = 47.3 bits (113), Expect = 6e-08
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+ +IL G GTR++ PK L A KPML H I+A G +++ + + AEQ+
Sbjct: 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 71 EDEL 74
L
Sbjct: 58 RKAL 61
>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 46.5 bits (111), Expect = 6e-08
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
M A+I+ GG GTR+ KPL+E KP++ +EAL V E+I+A+S
Sbjct: 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEAL-RKIVDEIIVAIS 49
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 46.4 bits (111), Expect = 1e-07
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
N A+IL G GTR++ PK L + KPM+ H ++++ +AG+ +++ V + AE
Sbjct: 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE 57
Query: 69 QMEDEL 74
++++ L
Sbjct: 58 EVKEVL 63
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose [Regulatory functions, Protein
interactions].
Length = 297
Score = 44.6 bits (105), Expect = 5e-07
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
N+KA+I V G G + P T + PK ++ +KPM+ + ++ +V AG++E++L
Sbjct: 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNA 62
Query: 70 MEDEL 74
+E+
Sbjct: 63 VENHF 67
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 44.6 bits (106), Expect = 5e-07
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
N+ A+IL GG G+RL PLT R KP V F K
Sbjct: 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGK 36
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is
also called ADP-glucose pyrophosphorylase. The plant
form is an alpha2,beta2 heterodimer, allosterically
regulated in plants. Both subunits are homologous and
included in this model. In bacteria, both homomeric
forms of GlgC and more active heterodimers of GlgC and
GlgD have been described. This model describes the GlgC
subunit only. This enzyme appears in variants of
glycogen synthesis pathways that use ADP-glucose,
rather than UDP-glucose as in animals [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 361
Score = 44.2 bits (105), Expect = 7e-07
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
A++L GG G+RL PLT R KP V F K
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGK 29
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 44.1 bits (104), Expect = 8e-07
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
N+KA+I V G G + P T + PK ++ +KPM+ + ++ +V AG++E++L
Sbjct: 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVL 54
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 429
Score = 43.7 bits (104), Expect = 9e-07
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 11 MK---ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
MK A+IL GG GTRL PLT R KP V A K
Sbjct: 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGK 34
>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain. This
family includes the MobA protein (Molybdopterin-guanine
dinucleotide biosynthesis protein A). The family also
includes a wide range of other NTP transferase domain.
Length = 178
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67
+IL GG +R+ K L+ KP+L ++ L A EV++ +
Sbjct: 1 GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE 49
>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 425
Score = 43.3 bits (103), Expect = 1e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
ALIL GG G+RL+ LT R KP V F K
Sbjct: 18 ALILAGGRGSRLKELTDKRAKPAVYFGGK 46
>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is
involved in the biosynthesis of glycogen or starch.
ADP-glucose pyrophosphorylase (glucose-1-phosphate
adenylyltransferase) catalyzes a very important step in
the biosynthesis of alpha 1,4-glucans (glycogen or
starch) in bacteria and plants: synthesis of the
activated glucosyl donor, ADP-glucose, from
glucose-1-phosphate and ATP. ADP-glucose
pyrophosphorylase is a tetrameric allosterically
regulated enzyme. While a homotetramer in bacteria, in
plant chloroplasts and amyloplasts, it is a
heterotetramer of two different, yet evolutionary
related, subunits. There are a number of conserved
regions in the sequence of bacterial and plant
ADP-glucose pyrophosphorylase subunits. It is a
subfamily of a very diverse glycosy transferase family
2.
Length = 200
Score = 42.5 bits (101), Expect = 2e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANK 41
A+IL GG GTRL PLT R KP V F +
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGR 29
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals.
Thus, CDP-ME synthetase is an attractive targets for
the structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 42.1 bits (100), Expect = 3e-06
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
A+IL G G+R+ PK +E KP+L H +EA + + E+++ V
Sbjct: 3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVP 52
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 42.0 bits (99), Expect = 4e-06
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+N+ A+IL G GTR++ K + A +PM+ + A EAG ++L V ++AE
Sbjct: 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAE 58
Query: 69 QMEDEL 74
++ +
Sbjct: 59 KVREHF 64
>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Reviewed.
Length = 227
Score = 41.7 bits (99), Expect = 5e-06
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
A+I G G+R+ RPK + KP+L H +EA + + E+I+ V
Sbjct: 6 AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVP 55
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 41.8 bits (99), Expect = 5e-06
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A+IL G GTR++ S PK L A +PML H + A G V + V AE +
Sbjct: 8 AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64
Query: 73 EL 74
Sbjct: 65 AA 66
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 41.4 bits (97), Expect = 6e-06
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 12 KALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
KA+I V G GTR+ P T + PK ++ +KP++ + + + AG+ E++L
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVL 59
>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein
occurs as IspDF, a bifunctional fusion protein
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 217
Score = 41.1 bits (97), Expect = 7e-06
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
A+I G GTR PK +E +P+L H ++A + + EV++ VS
Sbjct: 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 41.4 bits (98), Expect = 7e-06
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
M A+IL GG GTRL LT + KP V F K
Sbjct: 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 407
Score = 41.0 bits (97), Expect = 9e-06
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEF 38
A++L GG G RL PLT R KP V F
Sbjct: 8 AIVLAGGEGKRLMPLTADRAKPAVPF 33
>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 40.4 bits (95), Expect = 1e-05
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A++L G +R+ +PK L KP++ E + AG+ VI+ +R + +
Sbjct: 8 AVVLAAGRSSRMG-----QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVE 62
Query: 73 ELL 75
LL
Sbjct: 63 ALL 65
>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 39.9 bits (94), Expect = 2e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVSYRAEQME 71
A+IL G+G+R+ PK +E +P+L H +EA +E+ + E+++ VS E
Sbjct: 7 AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS--PEDDP 61
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase.
Length = 436
Score = 39.5 bits (93), Expect = 3e-05
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFA 39
P ++ A+IL GG GTRL PLT R KP V
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIG 32
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also
called GDP-mannose pyrophosphorylase (GDP-MP),
catalyzes the formation of GDP-Mannose from
mannose-1-phosphate and GTP. Mannose is a key
monosaccharide for glycosylation of proteins and
lipids. GDP-Mannose is the activated donor for
mannosylation of various biomolecules. This enzyme is
known to be bifunctional, as both mannose-6-phosphate
isomerase and mannose-1-phosphate guanylyltransferase.
This CD covers the N-terminal GDP-mannose-1-phosphate
guanylyltransferase domain, whereas the isomerase
function is located at the C-terminal half. GDP-MP is a
member of the nucleotidyltransferase family of enzymes.
Length = 274
Score = 39.5 bits (93), Expect = 3e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 11 MKALILVGGYGTRLRPLTLSR---PKPLVE-FANKPMLLHQIEALVEAGVREVILAV--- 63
+ +IL GG GTRL P LSR PK ++ F +K +L ++ L + IL V
Sbjct: 1 IYPVILAGGSGTRLWP--LSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNE 58
Query: 64 SYR---AEQMEDEL 74
YR EQ+ + L
Sbjct: 59 EYRFLVREQLPEGL 72
>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 39.2 bits (92), Expect = 4e-05
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
M +IL GG R+R K L+ +P++ H I+ L VI A
Sbjct: 1 MMTPMTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISANR 52
>gnl|CDD|200016 TIGR00454, TIGR00454, TIGR00454 family protein. At this time
this gene appears to be present only in Archea
[Hypothetical proteins, Conserved].
Length = 175
Score = 38.4 bits (89), Expect = 6e-05
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
ALI+ GG GTRL + KPL+E + ++ H + L+++ V +I+A S + E+
Sbjct: 2 ALIMAGGKGTRLGGVE----KPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEE 57
Query: 73 EL 74
+
Sbjct: 58 YI 59
>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin
guanine dinucleotide. The prokaryotic enzyme
molybdopterin-guanine dinucleotide biosynthesis protein
A (MobA). All mononuclear molybdoenzymes bind
molybdenum in complex with an organic cofactor termed
molybdopterin (MPT). In many bacteria, including
Escherichia coli, molybdopterin can be further modified
by attachment of a GMP group to the terminal phosphate
of molybdopterin to form molybdopterin guanine
dinucleotide (MGD). This GMP attachment step is
catalyzed by MobA, by linking a guanosine 5'-phosphate
to MPT forming molybdopterin guanine dinucleotide. This
reaction requires GTP, MgCl2, and the MPT form of the
cofactor. It is a reaction unique to prokaryotes, and
therefore may represent a potential drug target.
Length = 181
Score = 37.9 bits (89), Expect = 9e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVI 60
+ +IL GG R+ K L+E KP+L H +E L VI
Sbjct: 1 ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPLVDEVVI 45
>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 37.8 bits (88), Expect = 1e-04
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQME 71
ALIL G GTR+ +PK L +PML AL V V +RA+ +
Sbjct: 8 ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVR 63
>gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis
protein MobA; Reviewed.
Length = 193
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
+ +IL GG R+ K L E KP++ H IE L V E+++
Sbjct: 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERL-APQVDEIVI 49
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 36.5 bits (84), Expect = 4e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
+ +IL G GTR++ + PK L A +PM+ ++A + G R++++ + AEQ+
Sbjct: 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQV 64
Query: 71 EDEL 74
E L
Sbjct: 65 EAAL 68
>gnl|CDD|234166 TIGR03310, matur_ygfJ, molybdenum hydroxylase accessory protein,
YgfJ family. Members of this protein family are
probable accessory proteins for the biosynthesis of
enzymes related to xanthine dehydrogenase. Comparative
genomics suggests a role in the maturation of
selenium-dependent molybdenum hydroxylases, although a
tenuous alternative hypothesis is a role for this
protein (with a requirement for SelD, the selenium
donor protein in the selenocysteine and selenouridine
biosynthesis pathways) metabolizing a
selenium-containing substrate such as selenate.
Length = 188
Score = 35.4 bits (82), Expect = 9e-04
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
A+IL G +R+ + K L+ + K +L H ++ + EVIL + + A+
Sbjct: 2 AIILAAGLSSRMG-----QNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD 52
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 35.4 bits (82), Expect = 0.001
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
M +IL G GTR+ PK L A KPM+ H I+A E G + V L + + +
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62
Query: 71 EDEL 74
+ L
Sbjct: 63 KQTL 66
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 34.1 bits (79), Expect = 0.002
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
++L G GTR+R T PK L A + ML H + A + +++ V + E+
Sbjct: 7 VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRER 60
>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 245
Score = 34.3 bits (80), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL + KPM++ E +AG V++A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48
>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 430
Score = 33.8 bits (78), Expect = 0.003
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 14 LILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIE 49
+IL G GTR++ S PK L KPML + ++
Sbjct: 6 IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILK 38
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in
the capsule biosynthetic locus of Pasteurella
multocida. Its deducted product is likely involved in
the biosynthesis of the polysaccharide capsule, which
is found on surface of a wide range of bacteria. It is
a subfamily of Glycosyltransferase Family GT2, which
includes diverse families of glycosyltransferases with
a common GT-A type structural fold, which has two
tightly associated beta/alpha/beta domains that tend to
form a continuous central sheet of at least eight
beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 231
Score = 33.0 bits (76), Expect = 0.005
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 14 LILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73
+I + G G+R + + PKPL+E KPM+ IE+L + I R E
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFIC--RDEHNTKF 59
>gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide
biosynthesis protein A, proteobacterial. In many
molybdopterin-containing enzymes, including nitrate
reductase and dimethylsulfoxide reductase, the cofactor
is molybdopterin-guanine dinucleotide. The family
described here contains MobA, molybdopterin-guanine
dinucleotide biosynthesis protein A, from the
Proteobacteria only. MobA can reconstitute
molybdopterin-guanine dinucleotide biosynthesis without
the product of the neighboring gene MobB. The probable
MobA proteins of other lineages differ sufficiently
that they are not included in scope of this family
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 186
Score = 32.6 bits (75), Expect = 0.007
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
+IL GG R+ R K LVE KP++ H + L
Sbjct: 3 GVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARL 37
>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 32.6 bits (75), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 11 MKALILVGGYGTRLRPLTLSR---PKPLVEFA-NKPML 44
M +IL GG G+RL P LSR PK ++ + +L
Sbjct: 2 MIPVILAGGSGSRLWP--LSRKDYPKQFLKLFGDLSLL 37
>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the
activation of KDO which is an essential component of
the lipopolysaccharide. CMP-KDO Synthetase:
3-Deoxy-D-manno-octulosonate cytidylyltransferase
(CMP-KDO synthetase) catalyzes the conversion of CTP
and 3-deoxy-D-manno-octulosonate into
CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and
pyrophosphate. KDO is an essential component of the
lipopolysaccharide found in the outer surface of
gram-negative eubacteria. It is also a constituent of
the capsular polysaccharides of some gram-negative
eubacteria. Its presence in the cell wall
polysaccharides of green algae and plant were also
discovered. However, they have not been found in yeast
and animals. The absence of the enzyme in mammalian
cells makes it an attractive target molecule for drug
design.
Length = 239
Score = 30.9 bits (71), Expect = 0.032
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILA 62
KPL + A KPM+ H E +A G+ EV++A
Sbjct: 18 KPLADIAGKPMIQHVYERAKKAKGLDEVVVA 48
>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities:
1) 3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalyzing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43, catalyzing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized
describing kinetics and regulation by substrate charge,
energetic charge and amino-sugar demand.
Length = 197
Score = 30.4 bits (69), Expect = 0.043
Identities = 9/31 (29%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVRE-VILA 62
K L++ KP++ IEA +++ + + V++A
Sbjct: 16 KNLLKLGGKPLIARVIEAALQSKLFDKVVVA 46
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 30.5 bits (69), Expect = 0.054
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 11 MKALILVGGYGTRLRPLTLSR-PKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
M+AL+L G GTR++ S+ PK L + + KPM+ I+ + ++V + + + AE
Sbjct: 1 MRALVLAAGKGTRMK----SKIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAEL 55
Query: 70 MEDEL 74
++ L
Sbjct: 56 VKKLL 60
>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobA/MobB;
Provisional.
Length = 366
Score = 30.1 bits (68), Expect = 0.077
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
+IL GG R+ R K L+ KP++ ++ L
Sbjct: 8 GVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRL 42
>gnl|CDD|224133 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase
[Cell envelope biogenesis, outer membrane].
Length = 247
Score = 29.6 bits (67), Expect = 0.087
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILAV 63
KPL + KPM++ E +++G V++A
Sbjct: 20 KPLADIGGKPMIVRVAERALKSGADRVVVAT 50
>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate
cytidylyltransferase. [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 238
Score = 29.9 bits (67), Expect = 0.090
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL + KPM++H E E+G I+A
Sbjct: 16 KPLEDIFGKPMIVHVAENANESGADRCIVA 45
>gnl|CDD|218623 pfam05524, PEP-utilisers_N, PEP-utilising enzyme, N-terminal.
Length = 123
Score = 28.7 bits (65), Expect = 0.13
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 37 EFANKPMLLHQIEALVEAG------VREVILAVSYRAEQMEDELL 75
+ P LL ++E L+ G V+EVI + + E M+DE L
Sbjct: 75 MLLDDPELLEEVEELIREGLSAEAAVKEVIEEYAAQFEAMDDEYL 119
>gnl|CDD|223694 COG0621, MiaB, 2-methylthioadenine synthetase [Translation,
ribosomal structure and biogenesis].
Length = 437
Score = 29.1 bits (66), Expect = 0.14
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 45 LHQIEALVEAGVREVIL 61
L +++ LV GV+E++L
Sbjct: 179 LKEVKRLVAQGVKEIVL 195
>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007.
Length = 221
Score = 29.0 bits (65), Expect = 0.19
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS-YRAE 68
+ A+I G G R+ PK ++ +P+L H ++A + + V +++AVS
Sbjct: 1 VVAVIPAAGSGKRMGA---GVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTP 57
Query: 69 QMEDELLLH 77
+ LL
Sbjct: 58 EFRQ-LLGD 65
>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 238
Score = 28.0 bits (63), Expect = 0.35
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILA 62
KPL++ KPM+ H E +A GV EV +A
Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYVA 49
>gnl|CDD|222817 PHA00965, PHA00965, tail protein.
Length = 588
Score = 27.9 bits (62), Expect = 0.47
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 16 LVGGYGTRLRPLTLSRPKPLVEFAN-------KPMLLHQIEALVEAGVR 57
Y T++ P+ ++ PML+ + A++E+GVR
Sbjct: 519 ECNDYSTKIEPINSMTICNYLKCTGTYTLPNIDPMLMEMLRAILESGVR 567
>gnl|CDD|233480 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This
clade of sequences is closely related to MiaB, a
modifier of isopentenylated adenosine-37 of certain
eukaryotic and bacterial tRNAs (see TIGR01574). Sequence
alignments suggest that this equivalog performs the same
chemical transformation as MiaB, perhaps on a different
(or differently modified) tRNA base substrate. This
clade is a member of a subfamily (TIGR00089) and spans
low GC Gram positive bacteria, alpha and epsilon
proteobacteria, Campylobacter, Porphyromonas, Aquifex,
Thermotoga, Chlamydia, Treponema and Fusobacterium
[Protein synthesis, tRNA and rRNA base modification].
Length = 414
Score = 27.3 bits (61), Expect = 0.59
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 44 LLHQIEALVEAGVREVILA 62
+L Q++ LV G +E++L
Sbjct: 172 ILKQVKILVAKGYKEIVLT 190
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in
the synthesis of the spore coat. Spore coat
polysaccharide biosynthesis protein F (spsF) is a
glycosyltransferase implicated in the synthesis of the
spore coat in a variety of bacteria challenged by
stress as starvation. The spsF gene is expressed in the
late stage of coat development responsible for a
terminal step in coat formation that involves the
glycosylation of the coat. SpsF gene mutation resulted
in spores that appeared normal. But, the spores tended
to aggregate and had abnormal adsorption properties,
indicating a surface alteration.
Length = 233
Score = 27.2 bits (61), Expect = 0.77
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
K L KP+L H ++ L + + E+++A S
Sbjct: 16 KVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATS 48
>gnl|CDD|235063 PRK02726, PRK02726, molybdopterin-guanine dinucleotide
biosynthesis protein A; Provisional.
Length = 200
Score = 26.9 bits (60), Expect = 0.82
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPML 44
+N+ ALIL GG +R + + K L+ + P+L
Sbjct: 5 KNNLVALILAGGKSSR-----MGQDKALLPWQGVPLL 36
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase;
Provisional.
Length = 482
Score = 27.0 bits (60), Expect = 0.84
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 14 LILVGGYGTRLRPLTLSRPKPLVE 37
LIL GG GTRL +PK L+E
Sbjct: 110 LILAGGLGTRLG---SDKPKGLLE 130
>gnl|CDD|233431 TIGR01479, GMP_PMI, mannose-1-phosphate
guanylyltransferase/mannose-6-phosphate isomerase.
This enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and
mannose-1-phosphate guanylyltransferase (EC 2.7.7.22)
in Pseudomonas aeruginosa, Xanthomonas campestris, and
Gluconacetobacter xylinus. The literature on the enzyme
from E. coli attributes mannose-6-phosphate isomerase
activity to an adjacent gene, but the present sequence
has not been shown to lack the activity. The PMI domain
is C-terminal [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 468
Score = 26.9 bits (60), Expect = 0.99
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 15 ILVGGYGTRLRPLTLSR---PK---PLVEFANKPMLLHQIEALVEAGVRE--VILAVSYR 66
IL GG GTRL P LSR PK LV + ML ++ L VI +R
Sbjct: 5 ILAGGSGTRLWP--LSRELYPKQFLALV--GDLTMLQQTLKRLAGLPCSSPLVICNEEHR 60
Query: 67 ---AEQMEDELLLH 77
AEQ+ + L
Sbjct: 61 FIVAEQLREIGKLA 74
>gnl|CDD|234615 PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.
Length = 361
Score = 26.7 bits (60), Expect = 1.0
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 12 KALILV-GGYGTRL--RPLTLSRPKPLVEFANK--PMLLHQIEALVEAGVREVILA 62
++LV G G + L L +++ N PML +A GV++V+L
Sbjct: 202 DHVVLVTGNNGEDYARKLLGLP-EDAIIKMGNFVGPML----KAAARLGVKKVLLV 252
>gnl|CDD|220073 pfam08924, DUF1906, Domain of unknown function (DUF1906). This
domain is found in a set of uncharacterized
hypothetical bacterial proteins.
Length = 135
Score = 26.1 bits (58), Expect = 1.4
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 19 GYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVR 57
GY R L+ RP KP+ ++EA++ AG++
Sbjct: 17 GYAGVGRYLSGKRP---GSEFEKPLTRGELEAILAAGLK 52
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD
subunit. This family is GlgD, an apparent regulatory
protein that appears in an alpha2/beta2 heterotetramer
with GlgC (glucose-1-phosphate adenylyltransferase,
TIGR02091) in a subset of bacteria that use GlgC for
glycogen biosynthesis [Energy metabolism, Biosynthesis
and degradation of polysaccharides].
Length = 369
Score = 26.6 bits (59), Expect = 1.4
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLH-QIEALVEAGVREVILAVSYR 66
+ M A+I + L PLT RP + F + L+ + +V AG+R V + +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNK 59
>gnl|CDD|184017 PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase; Provisional.
Length = 230
Score = 26.4 bits (58), Expect = 1.5
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEA-LVEAGVREVILA 62
LI + + + K ++ +P+ +H + L + ++I+
Sbjct: 4 ELIFLAAGQGKR--MNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIV 52
>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 26.3 bits (59), Expect = 1.6
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 13 ALILVG-GYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
+L++V G TR + K + KP+ LH +E L A +E+++ +
Sbjct: 7 SLVIVAAGRSTRF---SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIH 57
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 26.2 bits (58), Expect = 1.9
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 16 LVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQI-EALVEAGVREVILAVS 64
L RL P +L+ P ++ LH+I + AG V + S
Sbjct: 147 LGARLDGRLIPGSLTTPDAII--------LHRILARMRAAGADAVAMEAS 188
>gnl|CDD|237092 PRK12408, PRK12408, glucokinase; Provisional.
Length = 336
Score = 25.9 bits (57), Expect = 2.2
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 42 PMLLHQIEALVEAGVREVIL-----AVSYRAEQMEDELLLH 77
+ QI A + G++ V L AV+Y A ME +L
Sbjct: 98 TLSPEQIRA--QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQ 136
>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family. The family includes the
protease PfpI. This domain is also found in
transcriptional regulators. This N-terminal region of
the full-length AdpA proteins is necessary for
dimerisation of the molecule.
Length = 142
Score = 25.8 bits (57), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
N D+ AL++ GG+ L + LV+F +
Sbjct: 32 NADDYDALVIPGGHAG---AEDLRDDEKLVKFVKE 63
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently
been shown to act instead as SEPHCHC synthase.
Conversion of SEPHCHC into SHCHC and pyruvate may occur
spontaneously but is catalyzed efficiently, at least in
some organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 25.6 bits (57), Expect = 2.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 48 IEALVEAGVREVILA 62
+E LV GVR V+++
Sbjct: 6 VEELVRLGVRHVVIS 20
>gnl|CDD|234585 PRK00035, hemH, ferrochelatase; Reviewed.
Length = 333
Score = 25.5 bits (57), Expect = 3.0
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 36 VEFANK---PMLLHQIEALVEAGVREVILAVSY 65
V + P + +EAL GV +++ Y
Sbjct: 96 VYLGMRYWNPSIEEALEALKADGVDRIVVLPLY 128
>gnl|CDD|224008 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 25.4 bits (56), Expect = 3.0
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVI 60
K + +F KP++ + IEA + + + + +
Sbjct: 20 KNIRKFGGKPLIGYTIEAALNSKLFDKV 47
>gnl|CDD|143492 cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Bacterial Cryptic D-Serine
Dehydratase. This subfamily is composed of
Burkholderia cepacia cryptic D-serine dehydratase
(cryptic DSD), which is also called D-serine deaminase,
and similar bacterial proteins. Members of this
subfamily are fold type III PLP-dependent enzymes with
similarity to bacterial alanine racemase (AR), which
contains an N-terminal PLP-binding TIM-barrel domain
and a C-terminal beta-sandwich domain. AR exists as
dimers with active sites that lie at the interface
between the TIM barrel domain of one subunit and the
beta-sandwich domain of the other subunit. Based on
similarity, it is possible cryptic DSDs may also form
dimers. Cryptic DSDs are distinct from the ubiquitous
bacterial DSDs coded by the dsdA gene, mammalian
L-serine dehydratases (LSD) and mammalian serine
racemase (SerRac), which are fold type II PLP-dependent
enzymes. At present, the enzymatic and biochemical
properties of cryptic DSDs are still poorly understood.
Typically, DSDs catalyze the dehydration of D-serine to
aminoacrylate, which is rapidly hydrolyzed to pyruvate
and ammonia.
Length = 382
Score = 25.3 bits (56), Expect = 3.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 45 LHQIEALVEAGVREVILA 62
+ Q + GVR V+LA
Sbjct: 60 VAQARVALAFGVRRVLLA 77
>gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 347
Score = 25.3 bits (56), Expect = 3.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 38 FANKPMLLHQIEALVEA 54
+A +P L H I A VE
Sbjct: 56 YAGEPFLRHLILAAVEE 72
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 25.2 bits (56), Expect = 3.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 33 KPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
K + KP++ IEA +E+ V+ VS
Sbjct: 18 KNIRPLGGKPLIAWTIEAALESKLFDRVV--VS 48
>gnl|CDD|237678 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 455
Score = 25.2 bits (55), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 44 LLHQIEALVEAGVREVIL----AVSYRAEQMEDELL 75
+L +I+ L E GVRE+ L SYR E ++
Sbjct: 186 ILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIV 221
>gnl|CDD|237673 PRK14325, PRK14325, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 444
Score = 25.1 bits (56), Expect = 4.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 48 IEALVEAGVREVIL 61
+ L E GVRE+ L
Sbjct: 185 VAQLAEQGVREITL 198
>gnl|CDD|110106 pfam01081, Aldolase, KDPG and KHG aldolase. This family includes
the following members: 4-hydroxy-2-oxoglutarate
aldolase (KHG-aldolase)
Phospho-2-dehydro-3-deoxygluconate aldolase
(KDPG-aldolase).
Length = 196
Score = 24.7 bits (54), Expect = 5.1
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 27 LTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
L ++ P++ +K L EAL G+R +L V+ R
Sbjct: 5 LREAKIVPVIVIKDKEDALPLAEALAAGGIR--VLEVTLRTP 44
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 472
Score = 24.7 bits (54), Expect = 5.2
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEAL-VEAGVR-EVILAVSYR 66
L L GG GTRL PK L E + L QI+ L + V + + S
Sbjct: 108 VLKLAGGQGTRLG---CDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLN 164
Query: 67 AEQMEDELLLH 77
E+ + +
Sbjct: 165 TEETDSYFKSN 175
>gnl|CDD|232820 TIGR00089, TIGR00089, radical SAM methylthiotransferase, MiaB/RimO
family. This subfamily contains the tRNA-i(6)A37
modification enzyme, MiaB (TIGR01574). The phylogenetic
tree indicates 4 distinct clades, one of which
corresponds to MiaB. The other three clades are modelled
by hypothetical equivalogs (TIGR01125, TIGR01579 and
TIGR01578). Together, the four models hit every sequence
hit by the subfamily model without any overlap between
them. This subfamily is aparrently a part of a larger
superfamily of enzymes utilizing both a 4Fe4S cluster
and S-adenosyl methionine (SAM) to initiate radical
reactions. MiaB acts on a particular isoprenylated
Adenine base of certain tRNAs causing thiolation at an
aromatic carbon, and probably also transferring a methyl
grouyp from SAM to the thiol. The particular substrate
of the three other clades is unknown but may be very
closely related.
Length = 429
Score = 24.9 bits (55), Expect = 5.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 45 LHQIEALVEAGVREVIL 61
L +++ LV GV+E++L
Sbjct: 174 LEEVKELVSKGVKEIVL 190
>gnl|CDD|238299 cd00537, MTHFR, Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase to convert homocysteine to methionine. The
enzymatic mechanism is a ping-pong bi-bi mechanism, in
which NAD(P)+ release precedes the binding of
methylenetetrahydrofolate and the acceptor is free FAD.
The family includes the 5,10-methylenetetrahydrofolate
reductase EC:1.7.99.5 from prokaryotes and
methylenetetrahydrofolate reductase EC: 1.5.1.20 from
eukaryotes. The bacterial enzyme is a homotetramer and
NADH is the preferred reductant while the eukaryotic
enzyme is a homodimer and NADPH is the preferred
reductant. In humans, there are several clinically
significant mutations in MTHFR that result in
hyperhomocysteinemia, which is a risk factor for the
development of cardiovascular disease.
Length = 274
Score = 24.5 bits (54), Expect = 5.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 39 ANKPMLLHQIEALVEAGVREVILAV 63
N+ L + G+R ILA+
Sbjct: 70 RNRIELQSILLGAHALGIRN-ILAL 93
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 24.4 bits (54), Expect = 6.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 20 YGTRLRPLTLSRPKPLVEFANKPMLLHQIEALV 52
+GTRL L +S K L F N P+ +I A V
Sbjct: 228 HGTRLHVLHISTAKELSLFENGPLAEKRITAEV 260
>gnl|CDD|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning].
Length = 298
Score = 24.4 bits (53), Expect = 6.9
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 3 GSGDNP-DNMKALILVGGYGTRLRPLTLSRPKPLVEFA 39
GSG M G +RPL R K + +A
Sbjct: 144 GSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELYA 181
>gnl|CDD|212109 cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of
mainly uncharacterized prokaryotic proteins similar to
archaeal thermoactive amylopullulanases; glycoside
hydrolase family 57 (GH57). This subfamily of mainly
uncharacterized bacterial proteins, shows high sequence
homology to GH57 archaeal thermoactive amylopullulanases
(APU, E.C 3.2.1.1/41). Thermoactive APUs are type II
pullulanases with both pullulanolytic and amylolytic
activities. They have an acid pH optimum and the
presence of Ca2+ might increase their activity,
thermostability, and substrate affinity.
Length = 327
Score = 24.5 bits (54), Expect = 7.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 48 IEALVEAGVREVILA 62
+EAL + G++ ILA
Sbjct: 158 LEALADEGIKFTILA 172
>gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate synthase (MenD) and related proteins.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate (SEPHCHC) synthase (MenD) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Escherichia coli MenD (EcMenD) is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. EcMenD catalyzes a Stetter-like conjugate
addition of alpha-ketoglutarate to isochorismate,
leading to the formation of SEPHCHC and carbon dioxide,
this addition is the first committed step in the
biosynthesis of vitamin K2 (menaquinone).
Length = 162
Score = 24.4 bits (54), Expect = 7.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 48 IEALVEAGVREVILA 62
+E L GVR+V+++
Sbjct: 4 VEELKRLGVRDVVIS 18
>gnl|CDD|144532 pfam00973, Paramyxo_ncap, Paramyxovirus nucleocapsid protein. The
nucleocapsid protein is referred to as NP. NP is is the
major structural component of the nucleocapsid. The
protein is approx. 58 kDa. 2600 NP molecules go to
tightly encapsidate the RNA. NP interacts with several
other viral encoded proteins, all of which are involved
in controlling replication. {NP-NP, NP-P, NP-(PL), and
NP-V}.
Length = 524
Score = 24.4 bits (53), Expect = 7.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 40 NKPMLLHQI----EALVEAGVREVILAVSYRAEQMEDELLLH 77
NKP + I +VEAG+ IL + + E M L LH
Sbjct: 246 NKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLH 287
>gnl|CDD|237064 PRK12333, PRK12333, nucleoside triphosphate pyrophosphohydrolase;
Reviewed.
Length = 204
Score = 24.4 bits (53), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 48 IEALVEAGVREVILAVS--YRAEQMEDELLL 76
I AL E GV E + AV RAE ++ E+ L
Sbjct: 158 IAALEEGGVAEALWAVVAWARAEGIDPEIAL 188
>gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 440
Score = 24.4 bits (53), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 44 LLHQIEALVEAGVREVIL 61
+L ++E L AGV+EV L
Sbjct: 172 ILRELELLKAAGVQEVTL 189
>gnl|CDD|237838 PRK14862, rimO, ribosomal protein S12 methylthiotransferase;
Provisional.
Length = 440
Score = 24.0 bits (53), Expect = 10.0
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 49 EALVEAGVREVILAVS 64
E LV+AGV+E +L +S
Sbjct: 178 ERLVKAGVKE-LLVIS 192
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.398
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,125,818
Number of extensions: 337956
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 126
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)