RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9166
(77 letters)
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D
structure, CTP:phosphocholine cytidylyltransferase;
1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB:
1jyl_A*
Length = 254
Score = 117 bits (294), Expect = 1e-34
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
+KA+IL G GTRLRPLT + PK LV+ KP++ +QIE L E G+ ++I+ V Y
Sbjct: 22 KEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYL 81
Query: 67 AEQME 71
EQ +
Sbjct: 82 KEQFD 86
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase;
pyrophosphorylase binding motif, pyrophosphorylase;
HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Length = 196
Score = 94.0 bits (234), Expect = 3e-26
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
M ALI+ GG GTR+ + KPL++ + ++ + + L+++ V + +A S +
Sbjct: 1 MDALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 71 EDEL 74
++ +
Sbjct: 57 KEYI 60
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 95.2 bits (237), Expect = 4e-26
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
KA+IL GG GTRL T+ +PKP+VE KP+L H ++ G+++ I+ Y+
Sbjct: 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYV 61
Query: 70 MED 72
+++
Sbjct: 62 IKE 64
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 90.3 bits (225), Expect = 2e-24
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
MKA+IL G GTRL + PKPLV ++L ++ L V E I+ S A+
Sbjct: 18 LMKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLL-SPHVSEFIIVASRYADD 72
Query: 70 MED 72
++
Sbjct: 73 IDA 75
>2ggo_A 401AA long hypothetical glucose-1-phosphate
thymidylyltransferase; beta barrel; 1.80A {Sulfolobus
tokodaii} PDB: 2ggq_A*
Length = 401
Score = 89.6 bits (223), Expect = 2e-23
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MKA IL G G RL P+T +RPK V +KP++ +QIE L + G+R++ + VS + ++
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNKEY 60
Query: 71 EDELL 75
++ L
Sbjct: 61 FEKKL 65
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural
genomics, PSI-biology; HET: MSE; 1.90A {Vibrio
cholerae}
Length = 255
Score = 67.0 bits (162), Expect = 2e-15
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 14 LILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMEDE 73
+I + G +R ++PK ++E + + H + + L +
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62
Query: 74 L 74
+
Sbjct: 63 V 63
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 54.2 bits (131), Expect = 5e-11
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67
+ ++L G RL PK L+ + + +L ++ +AG ++IL + A
Sbjct: 3 ATQITGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAA 57
Query: 68 EQMEDEL 74
+ +
Sbjct: 58 SAVRAAM 64
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 52.7 bits (127), Expect = 2e-10
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+ ++L GY RL PK L+ + +L + ++I+ + A+
Sbjct: 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAAD 58
Query: 69 QMEDEL 74
++ +++
Sbjct: 59 EVLEKV 64
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe;
acetyltransferase, bifunctional, drug design; HET: ACO
UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4
c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A*
1g95_A*
Length = 468
Score = 51.7 bits (125), Expect = 9e-10
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
+ + A+IL G GTR++ PK L + A ML H ++ + + V ++
Sbjct: 8 HHHSNFAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHK 64
Query: 67 AEQMEDEL 74
AE +E+ L
Sbjct: 65 AELVEEVL 72
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project O structural and functional
analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Length = 232
Score = 50.6 bits (121), Expect = 2e-09
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQMED 72
A++L GG + K LV + +PM+ +EAL AG+ V + +
Sbjct: 5 AIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPAPA 63
Query: 73 ELL 75
L
Sbjct: 64 LTL 66
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A
{Bacillus anthracis} PDB: 3hl3_A*
Length = 269
Score = 50.6 bits (122), Expect = 2e-09
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
+ MK +IL GG G+RL P+T K L+ PM+ H + L + + + I+ ++
Sbjct: 21 QSNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITD-IMIIT 77
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold; HET: TYD; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.68.1.6
Length = 295
Score = 49.8 bits (120), Expect = 5e-09
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
+MK ++L GG GTRL P+T + K L+ +KPM+ + + L+ AG+R+ IL +S
Sbjct: 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRD-ILIIS 56
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A
{Escherichia coli} SCOP: c.68.1.6
Length = 296
Score = 49.0 bits (118), Expect = 7e-09
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
+MK +IL GG GTRL P+T K L+ +KPM+ + + L+ AG+RE IL ++
Sbjct: 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIRE-ILIIT 56
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A*
...
Length = 293
Score = 49.0 bits (118), Expect = 7e-09
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
K +IL GG GTRL P TL+ K L+ +KPM+ + + L+ AG+RE IL +S
Sbjct: 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIIS 55
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis}
PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A*
1fwy_A*
Length = 459
Score = 49.0 bits (118), Expect = 8e-09
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+M +IL G GTR+ PK L A KPM+ H I+A ++ G + V L + E
Sbjct: 8 SMSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGEL 64
Query: 70 MEDEL 74
++ L
Sbjct: 65 LKKTL 69
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Length = 456
Score = 49.0 bits (118), Expect = 1e-08
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+ A+IL G GTR+ PK L A KPM+ H I+ + G + L + +
Sbjct: 5 ALSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDL 61
Query: 70 MEDEL 74
M L
Sbjct: 62 MRTHL 66
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 48.3 bits (116), Expect = 2e-08
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67
P + L+L G GTR+R PK L A + ML H + A+ + + +I+ + +
Sbjct: 10 PGDTAVLVLAAGPGTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDH 66
Query: 68 EQMEDEL 74
+++ +
Sbjct: 67 QRIAPLV 73
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 46.8 bits (112), Expect = 5e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
+ A +L GG G+RL+ LT R KP V F K
Sbjct: 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGK 43
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit;
ADP-glucose synthase, ADP-glucose pyrophosphorylase,
agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP:
b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 45.7 bits (109), Expect = 1e-07
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 6 DNPDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK 41
D ++ +IL GG GTRL PLT R KP V
Sbjct: 16 DASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 51
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase,
MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis}
PDB: 2xwm_A*
Length = 223
Score = 42.5 bits (101), Expect = 1e-06
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 11 MK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
M A++ G G RLR RPK V P+L H + L +G + +++AV
Sbjct: 1 MATVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVP 54
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
++L GG G R++ S PK + +P+ L+ V+E+++
Sbjct: 7 VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCD 56
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 41.8 bits (99), Expect = 2e-06
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 10 NMK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
++ A++ G+G R++ PK + N+ +L H + AL+ V+ V++A+S
Sbjct: 5 HLDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS 59
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 41.7 bits (99), Expect = 3e-06
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
ALI G G R +PK VE +K +L H + V ++ VS
Sbjct: 9 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 41.6 bits (98), Expect = 3e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
N+ +IL G G R K L + N P+++ I + ++I+ Y E
Sbjct: 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNTPIIMRTIRIY--GDLEKIIIVGKYVNEM 54
Query: 70 MEDEL 74
+ +
Sbjct: 55 LPLLM 59
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG,
joint center for structural GENO PSI, protein structure
initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP:
c.68.1.13
Length = 234
Score = 41.8 bits (99), Expect = 3e-06
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 3 GSGDNPDNMK----ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVR 57
GS + A++L G G R+ + PK +E + + + + +++ +
Sbjct: 2 GSDKIHHHHHHMNVAILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAID 58
Query: 58 EVILAVS 64
V++
Sbjct: 59 GVVIVTR 65
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
TTHA0171, ISPD_THET8, ISPD, structural genomics PSI;
2.20A {Thermus thermophilus HB8}
Length = 236
Score = 41.8 bits (99), Expect = 3e-06
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 5 GDNPDNMK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA 62
D+ +M+ LI G G RL PK ++ + +L + A +A EV++A
Sbjct: 18 DDDDKHMEVSVLIPAAGNGLRLG----RGPKAFLQVGGRTLLEWTLAAFRDAA--EVLVA 71
Query: 63 VS 64
+
Sbjct: 72 LP 73
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 41.4 bits (98), Expect = 3e-06
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
A IL GG GTR+ +S PK + KP+++H +E + +++++
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP 56
>3pnn_A Conserved domain protein; structural genomics, PSI-biology,
protein structure initiati midwest center for
structural genomics, MCSG; HET: MSE GOL; 1.90A
{Porphyromonas gingivalis}
Length = 303
Score = 41.6 bits (97), Expect = 3e-06
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 9 DNMK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
+ MK +L G G+R +L + + ++ + + + AG ++ + +
Sbjct: 2 NAMKPTLFVLAAGMGSRYG--SLKQLDGIGP-GGDTIMDYSVYDAIRAGFGRLVFVIRHS 58
Query: 67 AEQMEDELL 75
E+ E +
Sbjct: 59 FEKEFREKI 67
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 41.0 bits (97), Expect = 5e-06
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAG-VREVILAVS 64
A++ G G RL PK + + ++ ++ L+++G V V++AV
Sbjct: 10 AIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVP 59
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 41.0 bits (97), Expect = 6e-06
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 10 NMK-ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA-GVREVILAVS 64
+M A IL GG GTR+ PK +E ++P+L+H IE V + ++++ V
Sbjct: 1 HMIYAGILAGGTGTRMGISN--LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVH 55
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 40.1 bits (95), Expect = 1e-05
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 12 KALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVIL 61
K L GYGTR P+T + PK P+V +KP++ + +E +EAG + +
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEAGCEVMAI 53
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA);
alpha-beta protein, structural genomics, PSI-2, protein
STRU initiative; 2.31A {Archaeoglobus fulgidus}
Length = 208
Score = 39.6 bits (93), Expect = 2e-05
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
MK +LVGG G R+ K V K ++ +E + + V + +
Sbjct: 1 MKVAVLVGGVGRRI-----GMEKTEVMLCGKKLIEWVLEKY--SPFQTVFVCRDEK 49
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 39.4 bits (93), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 12 KALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVIL 61
KA+ V G GTR P T + PK P+V ++P++ + ++ VEAG+ ++I
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEAGIEQMIF 65
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 39.4 bits (93), Expect = 2e-05
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 12 KALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVIL 61
KA+I V G GTR+ P T + PK PLV +KP++ + + + AG+ E++L
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAAGITEIVL 59
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 38.4 bits (90), Expect = 5e-05
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS 64
M ++L G TR K + N P+ L+ + L + I+ S
Sbjct: 3 EMSLIMLAAGNSTRFN---TKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTS 54
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A;
putative protein, molybdenum cofactor, structural G
NPPSFA; 1.61A {Aquifex aeolicus}
Length = 201
Score = 37.2 bits (87), Expect = 1e-04
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
+L GG R K L E K ++ E +EV +
Sbjct: 17 CYVLAGGKSKRF-----GEDKLLYEIKGKKVIERVYETAKSV-FKEVYI 59
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics,
PSI, protein structure initi nysgrc; 2.30A
{Helicobacter pylori}
Length = 308
Score = 37.1 bits (87), Expect = 1e-04
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 10 NMKALILVGGYGTRLRPLTLSR---PKPLVEFANKPMLLHQ----IEALVEAGVREVILA 62
+K ++L GG G RL P LSR PK ++ + L +LV+ + ++
Sbjct: 4 KIKNILLSGGSGKRLWP--LSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETL--IVCN 59
Query: 63 VSYR---AEQMEDEL 74
+ E++++E+
Sbjct: 60 EKHYFLALEEIKNEI 74
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A;
molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A
{Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A*
1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Length = 201
Score = 37.3 bits (87), Expect = 1e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVIL 61
+ ++L GG R+ K L+E KP+ H +AL + V++
Sbjct: 6 TITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADAL-MTQLSHVVV 52
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 36.8 bits (86), Expect = 2e-04
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 12 KALILVGGYGTRLRPLTLSRPK---PLVEFANKPMLLHQIEALVEAGVREVIL 61
++ G GTR P T + PK P+V + P + E G + +
Sbjct: 14 TVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAELGATRLAI 63
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 35.2 bits (82), Expect = 6e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL + KPM+ E ++AG VI+A
Sbjct: 19 KPLADIGGKPMIQWVYEQAMQAGADRVIIA 48
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide
biosynthesis, magnesium; HET: KDO CTP; 1.90A
{Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 35.2 bits (82), Expect = 7e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPLV+ KPM++H +E E+G +I+A
Sbjct: 35 KPLVDINGKPMIVHVLERARESGAERIIVA 64
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope;
1.80A {Coxiella burnetii}
Length = 256
Score = 34.4 bits (80), Expect = 0.001
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
K LV+ A KPM+ H E+ +++G EV++A
Sbjct: 26 KALVDIAGKPMIQHVYESAIKSGAEEVVIA 55
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP:
c.68.1.13 PDB: 1vh3_A 3duv_A*
Length = 262
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL + KPM+ H E +++G VI+A
Sbjct: 19 KPLADIKGKPMIQHVFEKALQSGASRVIIA 48
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase;
HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A*
2x60_A* 2x5s_A*
Length = 336
Score = 33.2 bits (77), Expect = 0.003
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 11 MKALILVGGYGTRLRPLTLSR---PKPLVEFA-NKPML 44
MKALIL GG G R P LS PK ++ NK ++
Sbjct: 2 MKALILAGGSGERFWP--LSTPETPKQFLKLFGNKSLM 37
>2cu2_A Putative mannose-1-phosphate guanylyl transferase;
mannose-1-phosphate geranyltransferase, thermus
thermophilus structural genomics; 2.20A {Thermus
thermophilus} SCOP: b.81.4.1 c.68.1.20
Length = 337
Score = 32.9 bits (76), Expect = 0.004
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 10 NMKALILVGGYGTRLRPLTLSR---PKPLVEFANKPMLLHQ----IEALVEAGVREVILA 62
AL++ GG G RL P LSR PKP + LL + LV + +
Sbjct: 2 KTYALVMAGGRGERLWP--LSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVR 59
Query: 63 VSYR---AEQMEDE 73
+
Sbjct: 60 RDQEAVARPYADGI 73
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 1.90A {Acinetobacter baumannii}
PDB: 3pol_A
Length = 253
Score = 30.6 bits (70), Expect = 0.024
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILA 62
KPL+ ++PM+L ++ + G ++ +A
Sbjct: 18 KPLLLIHDRPMILRVVDQAKKVEGFDDLCVA 48
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli}
SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A*
1h7g_A* 1h7h_A* 1h7t_A*
Length = 245
Score = 30.5 bits (70), Expect = 0.027
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILA 62
KPL++ KPM+ H E ++ GV EV +A
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVA 49
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET:
CTP; 2.10A {Aquifex aeolicus}
Length = 234
Score = 28.6 bits (65), Expect = 0.12
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILA 62
KPL KP++ +E LV+ G VILA
Sbjct: 19 KPLKNLLGKPLIRWVVEGLVKTG-ERVILA 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.25
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 27/54 (50%)
Query: 24 LRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVS----YRAEQMEDE 73
RPLTLS H G E +L V + A Q++++
Sbjct: 6 TRPLTLS---------------H--------GSLEHVLLVPTASFFIASQLQEQ 36
Score = 26.6 bits (58), Expect = 0.95
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 22/60 (36%)
Query: 35 LVEFAN---KPMLLHQI---------EALVEA-------GVREVILAVSYRAEQMEDELL 75
LVE N + Q + + + + L S E++E L
Sbjct: 1840 LVEIVNYNVENQ---QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2b81_A Luciferase-like monooxygenase; TIM barrel, structural genomics,
PSI, protein structure INIT midwest center for
structural genomics, MCSG; HET: MES; 2.50A {Bacillus
cereus}
Length = 323
Score = 27.1 bits (60), Expect = 0.51
Identities = 13/67 (19%), Positives = 21/67 (31%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRA 67
PD K I P P L + L+ ++ GV + LA+
Sbjct: 243 PDVFKPFIQPMHLDLSEDPNERPTPIRLGYRTGRKALIELLDIYKSIGVNHLFLALFDGQ 302
Query: 68 EQMEDEL 74
++ L
Sbjct: 303 RPADEVL 309
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250,
UDP, putative UDP-glucose pyrophosphorylase; HET: UPG
U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4
c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Length = 469
Score = 26.7 bits (58), Expect = 0.73
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEAL 51
L L GG GT + + PK ++E + L QIE L
Sbjct: 82 VLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENL 121
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative;
rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG;
2.30A {Leishmania major} PDB: 2oef_A*
Length = 505
Score = 26.6 bits (58), Expect = 0.89
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLH----QIEALVEAGVREVILAV 63
L L GG GT + L K L+E + L Q++ L + + +
Sbjct: 78 VLKLNGGLGTGMG---LCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFML 129
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 26.3 bits (57), Expect = 0.92
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEAL 51
+ L GG GT + PK L+ N+ L QIE L
Sbjct: 130 VVKLNGGLGTSMG---CKGPKSLIGVRNENTFLDLTVQQIEHL 169
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; HET: CXS; 2.00A {Thermotoga
maritima MSB8}
Length = 304
Score = 26.0 bits (58), Expect = 1.3
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 44 LLHQIEALVEAGVREVIL 61
+ ++E L++ G +E+IL
Sbjct: 38 ITREVEDLLKEGKKEIIL 55
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 25.4 bits (56), Expect = 2.0
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 6 DNPDNMKALILVGGYG---TRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA 62
+ PD + LIL+G G + P+ + K L + +P +++++
Sbjct: 124 EYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSY---------ETLKQMLQV 174
Query: 63 VSYRAEQMEDELL 75
Y + +ELL
Sbjct: 175 FLYDQSLITEELL 187
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomi europe, spine,
hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB:
2obc_A* 2o7p_A*
Length = 402
Score = 25.2 bits (56), Expect = 2.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 49 EALVEAGVREVILAV 63
+AL+ AGV V+ ++
Sbjct: 113 DALIAAGVARVVASM 127
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP,
structural GE structural genomics consortium, SGC; HET:
UPG PG4; 1.92A {Trypanosoma brucei}
Length = 484
Score = 25.1 bits (54), Expect = 2.7
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEAL 51
L L GG GT + L+ PK L++ N L Q+E
Sbjct: 79 VLKLNGGLGTGMG---LNGPKSLLQVKNGQTFLDFTALQLEHF 118
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
{Streptococcus mutans} PDB: 2hvv_A*
Length = 184
Score = 24.7 bits (54), Expect = 3.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 50 ALVEAGVREVILAVSYRAEQMEDELL 75
AL++AGV+++ +YR EL+
Sbjct: 139 ALLQAGVKKITYNTAYRIHPFAIELM 164
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 24.6 bits (54), Expect = 3.2
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 6 DNPDNMKALILVGGYG---TRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILA 62
P+ + L+L+GG + P+ K L + +P + ++ ++
Sbjct: 127 KWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTI---------ENLKLMMDI 177
Query: 63 VSYRAEQMEDELL 75
+ + D L
Sbjct: 178 FVFDTSDLTDALF 190
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 24.8 bits (55), Expect = 3.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 42 PMLLHQIEALVEAG-------VREVILAVSYRAEQMEDELL 75
L +I AL++ EVI + E+++DE L
Sbjct: 83 EELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYL 123
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 24.8 bits (55), Expect = 3.3
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 36 VEFANK---PMLLHQIEALVEAGVREVILAVSY 65
P + + + + G+ E + V
Sbjct: 82 AYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLA 114
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Length = 488
Score = 24.7 bits (53), Expect = 3.4
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEAL-VEAGVR 57
L L GG GT + PK ++E L QIE L +
Sbjct: 95 VLKLNGGLGTSMG---CVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSD 141
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold,
UDP sugar pyrophospho transferase; 2.03A {Leishmania
major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Length = 630
Score = 24.9 bits (53), Expect = 3.6
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 9 DNMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAV 63
+++ GG G RL ++ P+ N L + + G +EV +
Sbjct: 113 CKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVI 167
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP:
a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A
2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Length = 258
Score = 24.5 bits (54), Expect = 3.8
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 42 PMLLHQIEALVEAG-------VREVILAVSYRAEQMEDELL 75
L +I AL++ EVI + E+++DE L
Sbjct: 83 EELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYL 123
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
domain and reductase domain, hydrolase, oxidoreductase;
2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
2d5n_A* 3ex8_A*
Length = 373
Score = 24.4 bits (54), Expect = 4.2
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 49 EALVEAGVREVILAV 63
E ++ +G++ V +A+
Sbjct: 97 ELIINSGIKRVFVAM 111
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 24.4 bits (54), Expect = 4.8
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 42 PMLLHQIEALV-------EAGVREVILAVSYRAEQMEDELL 75
P L+ I+ + + +V E M++E +
Sbjct: 85 PELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYM 125
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily),
rossmann fold, NAD binding, oxidoreductase; HET: NAP;
1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 23.5 bits (51), Expect = 8.1
Identities = 5/27 (18%), Positives = 6/27 (22%), Gaps = 1/27 (3%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKP 34
P AL V + P
Sbjct: 9 PPQQTALT-VNDHDEVTVWNAAPCPML 34
>3c8n_A Probable F420-dependent glucose-6-phosphate dehyd FGD1; TIM barrel,
non-prolyl CIS-peptide, oxidoreductase; 1.90A
{Mycobacterium tuberculosis} PDB: 3b4y_A
Length = 356
Score = 23.6 bits (51), Expect = 8.2
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 47 QIEALVEAGVREVIL 61
++ V G+ ++
Sbjct: 316 KVGQYVTWGLNHLVF 330
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 23.6 bits (52), Expect = 9.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 48 IEALVEAGVREVILAVS 64
+E + E G R + L VS
Sbjct: 179 MEFIKEVGGRAIKLPVS 195
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami
amino-6-(5-phosphoribosylamino)uracil...;
oxidoreductase, structural genomics; HET: NDP; 1.80A
{Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Length = 360
Score = 23.7 bits (52), Expect = 9.1
Identities = 3/15 (20%), Positives = 11/15 (73%)
Query: 49 EALVEAGVREVILAV 63
+ ++E+G++ V++
Sbjct: 100 DLIIESGIKTVVIGT 114
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 23.4 bits (51), Expect = 9.3
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 7 NPDNMKALILVGGYGTRLRPLTLSRPKPLVEF------ANKPMLL--HQIEALVEAGV 56
P AL+L GG+ P L V F + KP+ H + L+ A V
Sbjct: 83 TPAEFDALLLPGGHS----PDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADV 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.398
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,216,287
Number of extensions: 63443
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 85
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)