RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9166
(77 letters)
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Length = 291
Score = 94.4 bits (235), Expect = 5e-26
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
MK +IL GG GTRL P+T K L+ +KPM+ + + L+ AG+RE+++ + +
Sbjct: 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 71 EDELL 75
LL
Sbjct: 62 FQRLL 66
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
RfbF {Salmonella typhimurium [TaxId: 90371]}
Length = 259
Score = 93.6 bits (231), Expect = 6e-26
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
KA+IL GG GTRL T+ +PKP+VE KP+L H ++ G+++ I+ Y+
Sbjct: 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYV 61
Query: 70 MEDEL 74
+++
Sbjct: 62 IKEYF 66
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
287]}
Length = 292
Score = 93.7 bits (233), Expect = 9e-26
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 11 MKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
K +IL GG GTRL P TL+ K L+ +KPM+ + + L+ AG+RE+++ + +
Sbjct: 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 71 EDELL 75
+LL
Sbjct: 62 FQQLL 66
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 90.4 bits (224), Expect = 2e-24
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+MK ++L GG GTRL P+T + K L+ +KPM+ + + L+ AG+R++++ + R
Sbjct: 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLP 62
Query: 70 MEDELL 75
+ +LL
Sbjct: 63 LYRDLL 68
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate
adenylyltransferase small subunit, catalytic domain
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 307
Score = 85.1 bits (209), Expect = 3e-22
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 2 CGSGDNPDNMKALILVGGYGTRLRPLTLSRPKPLVEFA-NKPMLLHQIEALVEAGVREVI 60
C D ++ +IL GG GTRL PLT R KP V N ++ + + + + ++
Sbjct: 3 CLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIY 62
Query: 61 LAVSYRAEQMEDEL 74
+ + + + L
Sbjct: 63 VLTQFNSASLNRHL 76
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase
LicC {Streptococcus pneumoniae [TaxId: 1313]}
Length = 229
Score = 79.7 bits (195), Expect = 9e-21
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
+KA+IL G GTRLRPLT + PK LV+ KP++ +QIE L E G+ ++I+ V Y EQ
Sbjct: 3 RVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQ 62
Query: 70 MED 72
+
Sbjct: 63 FDY 65
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 248
Score = 69.7 bits (169), Expect = 8e-17
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
M +IL G GTR+ PK L A K M+ H I+A E G V L + +
Sbjct: 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDL 58
Query: 70 M 70
+
Sbjct: 59 L 59
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
uridyltransferase GlmU, N-terminal domain
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 250
Score = 67.0 bits (162), Expect = 6e-16
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
A+IL G GTR++ PK L + A ML H ++ + + V ++AE +
Sbjct: 4 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV 58
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase
TTHA1750 {Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 55.8 bits (133), Expect = 1e-11
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 11 MK--ALILVGGYGTRLRPL-TLSRPKPLVEFA-NKPMLLHQIEALVEAGVREVILAVSYR 66
MK AL++ GG G RL PL RPKP + K +L +E L E L R
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 67 AEQM 70
++
Sbjct: 61 DQEA 64
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 54.9 bits (131), Expect = 2e-11
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQ 69
A++L GG + K LV + +PM+ +EAL AG+ V + +
Sbjct: 2 RPSAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP 60
Query: 70 ME 71
Sbjct: 61 AP 62
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Thermotoga maritima
[TaxId: 2336]}
Length = 221
Score = 51.6 bits (122), Expect = 3e-10
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 10 NMK-ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAE 68
+M A++L G G R+ + PK +E + + + + +++ + ++ V+ R
Sbjct: 2 HMNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREW 58
Query: 69 QMEDE 73
E
Sbjct: 59 FEVVE 63
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Escherichia coli
[TaxId: 562]}
Length = 225
Score = 49.7 bits (117), Expect = 1e-09
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 10 NMK--ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEA 54
++ A++ G+G R++ PK + N+ +L H + AL+
Sbjct: 1 HLDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAH 44
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 226
Score = 48.9 bits (115), Expect = 3e-09
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
ALI G G R +PK VE +K +L H + ++ + V +
Sbjct: 6 ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTF 60
>d1w77a1 c.68.1.13 (A:75-300)
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
synthase (IspD, YgbP) {Thale cress (Arabidopsis
thaliana), chloroplast [TaxId: 3702]}
Length = 226
Score = 48.1 bits (113), Expect = 6e-09
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
++ ++L GG G R++ S PK + +P+ L+
Sbjct: 4 SVSVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTF 42
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me
synthase domain {Campylobacter jejuni [TaxId: 197]}
Length = 205
Score = 44.9 bits (105), Expect = 7e-08
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIEAL 51
M ++L G TR K + N P+ L+ + L
Sbjct: 1 EMSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNL 39
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId:
562]}
Length = 246
Score = 40.4 bits (93), Expect = 4e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KPLV+ KPM++H +E E+G +I+A +
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVAR 55
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Haemophilus influenzae [TaxId:
727]}
Length = 255
Score = 40.1 bits (92), Expect = 5e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 33 KPLVEFANKPMLLHQIEALVEAGVREVILAVSYRAEQM 70
KPL + KPM+ H E +++G VI+A
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein
MobA {Escherichia coli [TaxId: 562]}
Length = 188
Score = 38.8 bits (89), Expect = 1e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 10 NMKALILVGGYGTRLRPLTLSRPKPLVEFANKPMLLHQIE 49
+ ++L GG R+ K L+E KP+ H +
Sbjct: 3 TITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 228
Score = 34.6 bits (78), Expect = 3e-04
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVSYR 66
P ++ AL+L G + P K + A P++ + A ++AGV + + +
Sbjct: 1 PPHLAALVLARGGSKGI-------PLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH 53
Query: 67 AEQM 70
E
Sbjct: 54 DEIE 57
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId:
562]}
Length = 245
Score = 32.7 bits (73), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 33 KPLVEFANKPMLLHQIEALVEA-GVREVILAVSYRAEQM 70
KPL++ KPM+ H E ++ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQ 57
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 32.4 bits (72), Expect = 0.002
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 11 MK----ALILVGGYGTRLRPLTLSRP-KPLVEFANKPMLLHQIEALVEAGVREVILAVSY 65
M+ A+IL L P K L + +L H I A + + + I+ +
Sbjct: 1 MEKQNIAVILARQNSKGL-------PLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTD 53
Query: 66 RAEQM 70
Sbjct: 54 GGLIA 58
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 378
Score = 29.1 bits (65), Expect = 0.032
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 13 ALILVGGYGTRLRPLTLSRPKPLVEFANKPMLL----HQIEALVE 53
L L GG GT + + PK ++E + L QIE L
Sbjct: 77 VLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNN 118
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 26.2 bits (56), Expect = 0.38
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 47 QIEALVEAGVREVILAVSYRAEQME 71
+IEAL E GV + + ++ +
Sbjct: 285 KIEALGEMGVTQYVAGSPIGPDKEK 309
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.2 bits (56), Expect = 0.43
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 47 QIEALVEAGVREVILAVSYRAEQMED 72
+I G+ +L+ E+
Sbjct: 315 RINEYAALGIDSFVLSGYPHLEEAYR 340
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 347
Score = 25.1 bits (53), Expect = 1.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 47 QIEALVEAGVREVILAVSYRAEQME 71
+IE L++AGV +V++ ++ +
Sbjct: 309 KIEELLKAGVTQVVVGSPIGPDKEK 333
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 23.8 bits (52), Expect = 1.9
Identities = 8/24 (33%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 53 EAGVREVILAVSYRAEQMEDELLL 76
++GV ++ AV + E++++ELL
Sbjct: 1 KSGVSRLV-AVKHAPEEIKEELLC 23
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 23.6 bits (49), Expect = 3.0
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 47 QIEALVEAGVREVIL 61
+IE EAG+ L
Sbjct: 293 EIERFKEAGINHFCL 307
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 23.2 bits (48), Expect = 5.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 5 GDNPDNMKALILVGGYGTRLRPLTLSR 31
GD N + + V G R+ ++
Sbjct: 367 GDQRLNGRMVEDVLEIGVRIEGGVFTK 393
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 23.1 bits (49), Expect = 5.1
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 8 PDNMKALILVGGYGTRLRPLTLSRPKPLVEFANK------------PMLLHQIEALVEAG 55
KAL GG G + LT V K P + ++E LV+AG
Sbjct: 51 AALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAG 110
Query: 56 VREVILAVSY 65
V +++ ++
Sbjct: 111 VDVIVIDTAH 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.398
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,190
Number of extensions: 10756
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 31
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)