BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9168
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGK|A Chain A, Solution Structure Of Mouse Hypothetical Protein
2900073h19rik
Length = 114
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 33 IKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92
I+ L+ W+K N L ERPELF+QGDSVRPGILVLIN+ADWEL GEL Y+L++ D+I+FIST
Sbjct: 45 IRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104
Query: 93 LHGG 96
LHGG
Sbjct: 105 LHGG 108
>pdb|1XO3|A Chain A, Solution Structure Of Ubiquitin Like Protein From Mus
Musculus
Length = 101
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 33 IKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92
I+ L+ W+K N L ERPELF+QGDSVRPGILVLIN+ADWEL GEL Y+L++ D+I+FIST
Sbjct: 38 IRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 97
Query: 93 LHGG 96
LHGG
Sbjct: 98 LHGG 101
>pdb|2K9X|A Chain A, Solution Structure Of Urm1 From Trypanosoma Brucei
Length = 110
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 30 TGT-IKGLIEWLKLNKLTERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKENDT 86
TGT + GL++ LK N + ERP+L V G ++RPGILVL+N D E+ G + Y L + DT
Sbjct: 33 TGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDT 92
Query: 87 IMFISTLHGG 96
+ FISTLHGG
Sbjct: 93 VEFISTLHGG 102
>pdb|2QJL|A Chain A, Crystal Structure Of Urm1
pdb|2PKO|A Chain A, Crystal Structure Of Yeast Urm1 At 1.8 A Resolution
Length = 99
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 51 LFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96
+F++ DS+RPGI+ LIN+ DWEL GE Y L++ D I F STLHGG
Sbjct: 54 IFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99
>pdb|2AX5|A Chain A, Solution Structure Of Urm1 From Saccharomyces Cerevisiae
Length = 107
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 51 LFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96
+F++ DS+RPGI+ LIN+ DWEL GE Y L++ D I F STLHGG
Sbjct: 54 IFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHGG 99
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 62 ILVLINEADWELYGELTYELKENDTIMFISTLHGG 96
I VLINE D+ LK+ND + + T G
Sbjct: 459 ICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAG 493
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 62 ILVLINEADWELYGELTYELKENDTIMFISTLHGG 96
I VLINE D+ LK+ND + + T G
Sbjct: 457 ICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAG 491
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 39 WLKLNKLTERPELFVQGDSVRPGILVLINEA 69
WLK N +TE P+ F S P LVLI +A
Sbjct: 169 WLKENGITEHPDTFA---SHPPRSLVLIPKA 196
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 59 RPGILVLINEADWELYGELTYELKENDTIMFISTL 93
+PG+ V+I ++ G L +++ND ++F+ L
Sbjct: 139 QPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHL 173
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 59 RPGILVLINEADWELYGELTYELKENDTIMFISTL 93
+PG+ V+I ++ G L +++ND ++F+ L
Sbjct: 140 QPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHL 174
>pdb|2G1E|A Chain A, Solution Structure Of Ta0895
pdb|2K22|A Chain A, Automated Nmr Structure Of The Ta0895 By Fapsy
Length = 90
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 33 IKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92
I L+E LK+ +E + G+++ +++L+N + L E+K++D I
Sbjct: 27 ISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86
Query: 93 LHGG 96
+ GG
Sbjct: 87 VAGG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,235,667
Number of Sequences: 62578
Number of extensions: 117436
Number of successful extensions: 248
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 15
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)