Query psy9168
Match_columns 96
No_of_seqs 112 out of 417
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 20:36:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01764 Urm1 Urm1-like ubuitin 99.9 3.6E-27 7.7E-32 157.5 7.6 73 24-96 22-94 (94)
2 PF09138 Urm1: Urm1 (Ubiquitin 99.9 2.6E-24 5.7E-29 145.4 4.5 83 14-96 13-96 (96)
3 KOG4146|consensus 99.8 4.7E-21 1E-25 129.5 7.3 82 15-96 19-101 (101)
4 TIGR01687 moaD_arch MoaD famil 99.8 8.9E-20 1.9E-24 118.0 7.0 76 18-96 13-88 (88)
5 COG5131 URM1 Ubiquitin-like pr 99.8 7E-19 1.5E-23 118.2 7.5 75 22-96 21-96 (96)
6 PF02597 ThiS: ThiS family; I 99.6 4.4E-16 9.4E-21 97.3 4.9 65 20-96 13-77 (77)
7 cd00754 MoaD Ubiquitin domain 99.6 9.7E-16 2.1E-20 96.5 6.0 67 19-96 14-80 (80)
8 TIGR01682 moaD molybdopterin c 99.5 1.5E-14 3.2E-19 92.5 6.6 67 18-96 13-80 (80)
9 PRK11130 moaD molybdopterin sy 99.5 2.9E-14 6.3E-19 91.8 6.6 68 18-96 14-81 (81)
10 PLN02799 Molybdopterin synthas 99.5 1.1E-13 2.4E-18 88.6 5.5 64 21-96 19-82 (82)
11 COG1977 MoaD Molybdopterin con 99.4 4.1E-13 8.8E-18 87.7 4.5 61 31-96 24-84 (84)
12 PRK06944 sulfur carrier protei 99.2 6.3E-11 1.4E-15 72.7 6.0 59 20-96 7-65 (65)
13 cd00565 ThiS ThiaminS ubiquiti 99.2 5.9E-11 1.3E-15 73.5 4.7 60 20-96 6-65 (65)
14 TIGR01683 thiS thiamine biosyn 99.0 4.6E-10 1E-14 69.3 4.5 60 20-96 5-64 (64)
15 PRK08364 sulfur carrier protei 98.9 2.8E-09 6E-14 67.3 6.2 57 19-96 14-70 (70)
16 PRK06488 sulfur carrier protei 98.8 8.1E-09 1.8E-13 63.8 5.5 58 21-96 8-65 (65)
17 PRK06437 hypothetical protein; 98.8 1.7E-08 3.6E-13 63.5 4.9 55 21-96 13-67 (67)
18 PRK08053 sulfur carrier protei 98.7 1.8E-08 3.9E-13 62.7 4.7 60 20-96 7-66 (66)
19 PRK05659 sulfur carrier protei 98.6 8.6E-08 1.9E-12 58.9 4.5 59 21-96 8-66 (66)
20 PRK05863 sulfur carrier protei 98.4 9E-07 2E-11 55.0 5.7 58 21-96 8-65 (65)
21 PRK07440 hypothetical protein; 98.4 5.9E-07 1.3E-11 56.9 4.3 60 20-96 11-70 (70)
22 COG2104 ThiS Sulfur transfer p 98.2 2.4E-06 5.3E-11 54.4 4.6 60 20-96 9-68 (68)
23 PRK07696 sulfur carrier protei 98.2 2.4E-06 5.3E-11 53.5 4.2 58 22-96 9-67 (67)
24 PRK01777 hypothetical protein; 98.2 4.6E-06 9.9E-11 56.1 5.5 59 24-94 20-78 (95)
25 PRK06083 sulfur carrier protei 98.1 3.8E-06 8.1E-11 55.3 4.2 60 20-96 25-84 (84)
26 PRK11840 bifunctional sulfur c 97.9 1.9E-05 4.1E-10 63.3 5.6 60 20-96 7-66 (326)
27 PF14451 Ub-Mut7C: Mut7-C ubiq 97.5 0.00012 2.6E-09 47.9 3.6 55 21-93 23-77 (81)
28 PF06805 Lambda_tail_I: Bacter 97.2 0.00094 2E-08 43.6 5.0 59 30-96 24-82 (82)
29 PF02824 TGS: TGS domain; Int 96.9 0.0019 4E-08 39.5 4.1 52 20-90 8-59 (60)
30 cd00196 UBQ Ubiquitin-like pro 96.8 0.009 1.9E-07 32.3 6.0 60 20-92 9-69 (69)
31 KOG3474|consensus 96.3 0.0027 5.9E-08 41.8 2.1 64 23-96 21-84 (84)
32 cd01616 TGS The TGS domain, na 95.8 0.075 1.6E-06 29.6 6.3 52 20-90 8-59 (60)
33 cd01666 TGS_DRG_C TGS_DRG_C: 95.8 0.042 9.1E-07 35.3 5.7 67 8-90 8-74 (75)
34 cd01668 TGS_RelA_SpoT TGS_RelA 95.6 0.058 1.3E-06 31.3 5.6 52 20-90 8-59 (60)
35 cd01806 Nedd8 Nebb8-like ubiq 94.5 0.16 3.4E-06 30.9 5.3 68 17-96 7-76 (76)
36 PF13085 Fer2_3: 2Fe-2S iron-s 94.5 0.17 3.6E-06 34.8 6.0 80 3-91 5-91 (110)
37 cd01804 midnolin_N Ubiquitin-l 94.1 0.15 3.3E-06 32.2 4.8 60 22-96 15-76 (78)
38 cd04938 TGS_Obg-like TGS_Obg-l 94.1 0.2 4.3E-06 32.1 5.4 64 5-90 5-75 (76)
39 cd01669 TGS_Ygr210_C TGS_Ygr21 93.7 0.24 5.2E-06 31.8 5.2 53 21-90 23-75 (76)
40 PRK07570 succinate dehydrogena 93.5 0.31 6.8E-06 37.5 6.5 84 3-92 8-102 (250)
41 TIGR00384 dhsB succinate dehyd 93.4 0.23 5E-06 36.9 5.5 76 3-91 2-84 (220)
42 PF03658 Ub-RnfH: RnfH family 93.1 0.43 9.4E-06 31.6 5.7 56 24-93 17-74 (84)
43 cd01803 Ubiquitin Ubiquitin. U 92.0 0.4 8.8E-06 29.0 4.3 64 21-96 11-76 (76)
44 cd01810 ISG15_repeat2 ISG15 ub 91.7 0.36 7.7E-06 29.9 3.9 69 16-96 4-74 (74)
45 PRK12385 fumarate reductase ir 91.2 0.5 1.1E-05 36.1 5.0 80 3-91 12-93 (244)
46 PRK05950 sdhB succinate dehydr 91.0 0.7 1.5E-05 34.6 5.5 76 3-91 5-88 (232)
47 PRK11507 ribosome-associated p 90.9 0.21 4.5E-06 32.2 2.2 57 24-89 5-61 (70)
48 PLN00129 succinate dehydrogena 90.1 1.2 2.5E-05 35.1 6.2 79 3-91 49-132 (276)
49 PF14453 ThiS-like: ThiS-like 90.0 0.32 6.9E-06 30.1 2.5 24 64-91 32-55 (57)
50 COG2501 S4-like RNA binding pr 88.4 0.36 7.8E-06 31.3 2.0 52 29-89 10-61 (73)
51 PRK13552 frdB fumarate reducta 88.4 1 2.2E-05 34.4 4.7 73 9-91 17-93 (239)
52 COG0479 FrdB Succinate dehydro 88.1 2.3 5E-05 32.9 6.5 55 12-71 16-70 (234)
53 PF01561 Hanta_G2: Hantavirus 86.8 0.6 1.3E-05 39.4 2.8 48 12-79 271-318 (485)
54 cd01763 Sumo Small ubiquitin-r 86.7 4.5 9.9E-05 25.8 6.4 66 20-96 21-87 (87)
55 cd01802 AN1_N ubiquitin-like d 86.1 2 4.3E-05 28.8 4.6 68 17-96 34-103 (103)
56 PRK12577 succinate dehydrogena 85.5 2 4.3E-05 34.1 5.1 72 12-92 15-99 (329)
57 PTZ00044 ubiquitin; Provisiona 85.4 3.4 7.4E-05 25.1 5.1 68 17-96 7-76 (76)
58 PF11543 UN_NPL4: Nuclear pore 84.7 1.8 3.9E-05 27.9 3.7 63 20-91 15-79 (80)
59 KOG1769|consensus 84.6 6.6 0.00014 26.9 6.6 61 22-96 32-96 (99)
60 PF00498 FHA: FHA domain; Int 84.3 0.67 1.4E-05 27.6 1.5 26 62-89 42-67 (68)
61 TIGR02988 YaaA_near_RecF S4 do 83.8 1.2 2.6E-05 26.5 2.5 23 64-89 36-58 (59)
62 cd01667 TGS_ThrRS_N TGS _ThrRS 82.2 6.5 0.00014 21.7 6.1 52 21-91 9-60 (61)
63 cd01800 SF3a120_C Ubiquitin-li 82.0 7.8 0.00017 23.9 5.8 65 20-96 7-73 (76)
64 PF13275 S4_2: S4 domain; PDB: 81.9 0.55 1.2E-05 29.6 0.5 52 29-89 6-57 (65)
65 COG0481 LepA Membrane GTPase L 81.9 5.3 0.00012 34.7 6.4 66 19-92 160-233 (603)
66 TIGR00691 spoT_relA (p)ppGpp s 81.8 5.4 0.00012 34.8 6.6 51 23-92 372-422 (683)
67 cd01812 BAG1_N Ubiquitin-like 81.7 3.5 7.6E-05 24.5 4.0 56 22-91 13-70 (71)
68 cd01805 RAD23_N Ubiquitin-like 81.4 6.1 0.00013 24.0 5.1 60 19-90 9-72 (77)
69 PF11834 DUF3354: Domain of un 81.2 8.1 0.00018 24.5 5.7 51 10-64 9-59 (69)
70 PRK12576 succinate dehydrogena 79.2 5.3 0.00011 31.1 5.2 74 3-91 14-97 (279)
71 PF00788 RA: Ras association ( 79.1 5.2 0.00011 24.7 4.3 24 20-45 18-41 (93)
72 COG1163 DRG Predicted GTPase [ 79.0 8.8 0.00019 31.7 6.5 67 6-91 295-364 (365)
73 smart00314 RA Ras association 78.1 9.3 0.0002 24.0 5.3 40 18-67 15-54 (90)
74 cd01793 Fubi Fubi ubiquitin-li 77.7 5.3 0.00012 24.5 4.0 62 21-96 11-74 (74)
75 PRK12575 succinate dehydrogena 77.5 5.9 0.00013 30.2 5.0 81 3-91 10-91 (235)
76 cd01784 rasfadin_RA Ubiquitin- 76.3 12 0.00025 25.1 5.5 31 12-46 8-38 (87)
77 COG4723 Phage-related protein, 76.3 2.6 5.6E-05 32.0 2.6 60 31-96 26-88 (198)
78 smart00363 S4 S4 RNA-binding d 75.9 2.9 6.2E-05 22.9 2.2 25 63-90 27-51 (60)
79 PF11976 Rad60-SLD: Ubiquitin- 75.1 9.3 0.0002 22.9 4.5 58 20-90 10-71 (72)
80 COG2914 Uncharacterized protei 73.6 7.6 0.00016 26.6 4.1 56 24-93 20-77 (99)
81 PF14478 DUF4430: Domain of un 73.1 3.7 8E-05 25.1 2.4 30 59-89 38-67 (68)
82 PF00240 ubiquitin: Ubiquitin 71.1 19 0.0004 21.2 5.7 57 21-90 6-65 (69)
83 PRK03955 hypothetical protein; 70.8 30 0.00066 24.5 6.9 80 8-91 39-121 (131)
84 PF01479 S4: S4 domain; Inter 69.4 3.5 7.5E-05 23.1 1.5 21 64-87 28-48 (48)
85 cd01791 Ubl5 UBL5 ubiquitin-li 69.2 15 0.00032 23.0 4.6 59 20-90 11-71 (73)
86 PRK09602 translation-associate 68.0 12 0.00027 30.4 5.0 55 21-92 341-395 (396)
87 PRK10872 relA (p)ppGpp synthet 67.8 14 0.0003 33.0 5.5 51 23-92 416-466 (743)
88 PRK08640 sdhB succinate dehydr 67.4 6.2 0.00013 30.3 3.0 80 3-91 11-98 (249)
89 KOG0126|consensus 64.1 5.5 0.00012 30.5 2.1 22 71-92 37-58 (219)
90 PRK12386 fumarate reductase ir 63.5 17 0.00038 28.0 4.8 54 13-72 17-71 (251)
91 TIGR00601 rad23 UV excision re 63.1 12 0.00026 30.6 4.1 62 17-90 7-73 (378)
92 cd01807 GDX_N ubiquitin-like d 62.6 13 0.00028 22.7 3.3 61 19-91 9-71 (74)
93 COG0024 Map Methionine aminope 62.4 18 0.00038 28.3 4.7 59 29-89 34-95 (255)
94 cd01815 BMSC_UbP_N Ubiquitin-l 62.2 14 0.0003 23.8 3.5 61 18-90 6-73 (75)
95 PF06071 YchF-GTPase_C: Protei 61.8 3.3 7.2E-05 27.5 0.5 16 74-89 66-81 (84)
96 cd01768 RA RA (Ras-associating 61.2 13 0.00029 23.1 3.2 26 18-45 12-37 (87)
97 PLN02856 fumarylacetoacetase 59.9 28 0.00061 29.1 5.7 62 31-93 331-403 (424)
98 cd01813 UBP_N UBP ubiquitin pr 59.4 23 0.00049 22.0 4.0 61 20-91 9-73 (74)
99 cd00165 S4 S4/Hsp/ tRNA synthe 58.4 12 0.00025 21.0 2.4 24 64-90 28-51 (70)
100 PRK11092 bifunctional (p)ppGpp 58.4 17 0.00037 32.1 4.4 27 62-92 422-448 (702)
101 cd04867 TGS_YchF_C TGS_YchF_C: 58.3 5.7 0.00012 26.4 1.2 16 74-89 66-81 (83)
102 PRK00413 thrS threonyl-tRNA sy 58.3 28 0.00061 29.4 5.5 53 20-91 9-61 (638)
103 PF09364 XFP_N: XFP N-terminal 57.6 2.4 5.3E-05 35.0 -0.8 58 2-62 283-342 (379)
104 COG5227 SMT3 Ubiquitin-like pr 57.3 7.8 0.00017 26.5 1.7 58 20-88 34-92 (103)
105 PF09379 FERM_N: FERM N-termin 56.8 20 0.00043 21.7 3.4 30 21-52 9-38 (80)
106 PF14950 DUF4502: Domain of un 56.7 15 0.00032 30.3 3.5 31 58-93 325-355 (358)
107 cd01809 Scythe_N Ubiquitin-lik 56.4 39 0.00084 19.8 4.8 59 21-91 11-71 (72)
108 PF13019 Telomere_Sde2: Telome 55.7 40 0.00086 24.9 5.3 29 21-49 15-43 (162)
109 cd01798 parkin_N amino-termina 55.2 30 0.00064 20.7 4.0 61 18-90 6-68 (70)
110 PRK12444 threonyl-tRNA synthet 54.6 38 0.00082 29.0 5.8 53 20-91 13-65 (639)
111 cd01792 ISG15_repeat1 ISG15 ub 53.8 30 0.00064 21.5 3.9 62 18-90 10-74 (80)
112 TIGR01266 fum_ac_acetase fumar 53.1 46 0.00099 27.8 5.9 59 32-91 324-393 (415)
113 PLN02560 enoyl-CoA reductase 52.2 38 0.00082 26.9 5.1 59 22-89 17-80 (308)
114 KOG1349|consensus 51.3 15 0.00033 29.5 2.7 47 20-69 98-148 (309)
115 PF02080 TrkA_C: TrkA-C domain 51.1 14 0.0003 21.7 2.0 20 72-91 39-58 (71)
116 TIGR03354 VI_FHA type VI secre 50.4 17 0.00037 29.8 2.9 28 64-91 69-96 (396)
117 cd01808 hPLIC_N Ubiquitin-like 50.3 54 0.0012 19.6 4.9 56 22-91 13-70 (71)
118 KOG0462|consensus 49.6 37 0.0008 30.0 4.9 69 14-90 204-280 (650)
119 cd00060 FHA Forkhead associate 48.7 19 0.00041 22.0 2.4 27 63-91 67-93 (102)
120 PF01957 NfeD: NfeD-like C-ter 47.7 22 0.00048 23.5 2.8 32 58-91 101-132 (144)
121 COG1188 Ribosome-associated he 46.2 22 0.00047 24.3 2.5 23 64-90 36-58 (100)
122 cd01787 GRB7_RA RA (RAS-associ 45.9 34 0.00073 22.7 3.3 28 15-44 9-36 (85)
123 cd05484 retropepsin_like_LTR_2 45.5 20 0.00044 22.4 2.2 26 61-92 2-27 (91)
124 PF01802 Herpes_V23: Herpesvir 45.5 16 0.00035 29.2 2.0 60 32-96 54-114 (296)
125 PF09014 Sushi_2: Beta-2-glyco 45.3 10 0.00023 25.3 0.8 29 62-90 11-39 (85)
126 PTZ00258 GTP-binding protein; 44.6 13 0.00029 30.5 1.5 17 74-90 369-385 (390)
127 cd01778 RASSF1_RA Ubiquitin-li 44.0 64 0.0014 21.9 4.5 25 19-45 17-41 (96)
128 PRK09601 GTP-binding protein Y 43.8 14 0.0003 30.2 1.5 16 74-89 345-360 (364)
129 TIGR01017 rpsD_bact ribosomal 43.8 22 0.00048 26.4 2.5 26 63-91 116-141 (200)
130 CHL00113 rps4 ribosomal protei 43.5 22 0.00047 26.7 2.4 58 30-90 77-139 (201)
131 TIGR02958 sec_mycoba_snm4 secr 43.3 1.2E+02 0.0025 25.3 6.8 70 19-92 10-80 (452)
132 PRK08671 methionine aminopepti 42.6 70 0.0015 24.6 5.2 54 29-90 25-81 (291)
133 PF00077 RVP: Retroviral aspar 41.7 11 0.00024 23.7 0.5 27 59-91 5-31 (100)
134 TIGR00501 met_pdase_II methion 41.7 63 0.0014 25.0 4.8 55 29-90 28-84 (295)
135 PHA03259 Capsid triplex subuni 41.6 20 0.00042 28.9 2.0 55 32-96 54-114 (302)
136 KOG1654|consensus 41.4 53 0.0012 23.1 3.9 40 19-70 45-84 (116)
137 cd01782 AF6_RA_repeat1 Ubiquit 41.0 28 0.0006 24.4 2.4 28 17-46 34-61 (112)
138 PHA03258 Capsid triplex subuni 41.0 20 0.00044 28.8 2.0 61 32-96 58-120 (304)
139 COG0522 RpsD Ribosomal protein 40.7 22 0.00047 26.9 2.0 24 63-89 120-143 (205)
140 PRK05327 rpsD 30S ribosomal pr 40.7 26 0.00056 26.1 2.4 26 63-91 119-144 (203)
141 PF03831 PhnA: PhnA protein; 40.1 15 0.00032 22.8 0.8 14 78-91 7-20 (56)
142 PHA03257 Capsid triplex subuni 39.8 22 0.00047 28.9 2.0 62 32-96 59-122 (316)
143 KOG1892|consensus 39.7 41 0.00089 32.0 3.9 48 17-69 53-100 (1629)
144 PF10844 DUF2577: Protein of u 39.3 27 0.00058 23.1 2.1 16 80-95 76-91 (100)
145 cd01796 DDI1_N DNA damage indu 38.9 89 0.0019 18.9 5.4 22 22-45 13-34 (71)
146 TIGR00495 crvDNA_42K 42K curve 38.9 69 0.0015 26.1 4.8 61 29-89 42-109 (389)
147 cd01794 DC_UbP_C dendritic cel 37.8 55 0.0012 20.0 3.2 58 21-90 9-68 (70)
148 KOG0785|consensus 37.7 45 0.00098 27.5 3.5 71 10-89 71-149 (365)
149 smart00455 RBD Raf-like Ras-bi 37.4 59 0.0013 20.2 3.4 24 22-45 11-34 (70)
150 cd01789 Alp11_N Ubiquitin-like 37.2 1.1E+02 0.0023 19.3 6.5 59 25-90 19-79 (84)
151 cd01769 UBL Ubiquitin-like dom 36.8 81 0.0018 17.8 6.6 60 20-90 7-67 (69)
152 COG1716 FOG: FHA domain [Signa 36.4 31 0.00068 24.0 2.2 30 59-92 128-157 (191)
153 smart00537 DCX Domain in the D 35.6 95 0.0021 20.0 4.3 45 9-56 12-60 (89)
154 COG1126 GlnQ ABC-type polar am 35.3 34 0.00075 26.8 2.4 27 70-96 14-40 (240)
155 PHA02101 hypothetical protein 35.3 66 0.0014 21.8 3.5 40 25-64 19-63 (101)
156 TIGR00686 phnA alkylphosphonat 34.7 39 0.00084 23.5 2.4 18 74-91 44-61 (109)
157 PRK11025 23S rRNA pseudouridyl 34.7 35 0.00077 26.6 2.4 25 63-91 46-70 (317)
158 COG0564 RluA Pseudouridylate s 34.6 40 0.00086 26.4 2.7 27 63-93 38-64 (289)
159 cd03864 M14_CPN Peptidase M14 33.6 79 0.0017 25.9 4.4 56 32-92 303-358 (392)
160 cd03869 M14_CPX_like Peptidase 33.4 1.1E+02 0.0023 25.5 5.1 57 31-92 315-371 (405)
161 TIGR02884 spore_pdaA delta-lac 32.9 72 0.0016 23.5 3.7 42 2-43 1-62 (224)
162 PLN00051 RNA-binding S4 domain 32.5 44 0.00096 26.1 2.6 23 64-89 218-240 (267)
163 cd01801 Tsc13_N Ubiquitin-like 32.3 1.2E+02 0.0027 18.5 4.3 51 28-89 20-74 (77)
164 PF08825 E2_bind: E2 binding d 32.2 38 0.00082 22.0 1.9 20 23-44 1-20 (84)
165 COG0146 HyuB N-methylhydantoin 32.1 61 0.0013 28.3 3.6 33 64-96 485-518 (563)
166 PF13510 Fer2_4: 2Fe-2S iron-s 31.8 71 0.0015 20.1 3.1 65 19-88 9-78 (82)
167 cd01088 MetAP2 Methionine Amin 31.4 1E+02 0.0022 23.7 4.5 55 29-90 24-80 (291)
168 PRK06259 succinate dehydrogena 31.1 1.7E+02 0.0037 23.9 6.0 77 3-89 9-86 (486)
169 PF10302 DUF2407: DUF2407 ubiq 31.1 1.3E+02 0.0029 19.9 4.5 31 17-47 10-40 (97)
170 TIGR00005 rluA_subfam pseudour 31.1 53 0.0012 25.0 2.8 25 63-90 32-56 (299)
171 PF03339 Pox_L3_FP4: Poxvirus 31.1 52 0.0011 26.8 2.9 40 57-96 252-291 (319)
172 PF01568 Molydop_binding: Moly 30.9 27 0.00058 22.2 1.0 27 62-93 30-56 (110)
173 PRK10839 16S rRNA pseudouridyl 30.7 48 0.001 24.4 2.5 25 63-90 26-50 (232)
174 PF06241 DUF1012: Protein of u 30.7 56 0.0012 25.0 2.8 30 65-95 123-152 (206)
175 COG4110 Uncharacterized protei 30.4 70 0.0015 24.2 3.3 41 34-74 65-111 (200)
176 COG3760 Uncharacterized conser 29.4 81 0.0017 23.4 3.4 69 19-92 18-87 (164)
177 cd01760 RBD Ubiquitin-like dom 29.3 95 0.0021 19.6 3.4 21 23-45 14-34 (72)
178 PRK10220 hypothetical protein; 29.2 54 0.0012 22.9 2.3 16 76-91 47-62 (111)
179 COG0490 Putative regulatory, l 29.0 73 0.0016 23.5 3.1 30 62-92 117-146 (162)
180 TIGR03069 PS_II_S4 photosystem 29.0 54 0.0012 25.3 2.6 23 64-89 210-232 (257)
181 COG4390 Uncharacterized protei 28.7 47 0.001 22.8 1.9 26 70-95 12-37 (106)
182 PF14560 Ubiquitin_2: Ubiquiti 28.4 1.5E+02 0.0033 18.4 5.2 63 22-90 17-81 (87)
183 PF07385 DUF1498: Protein of u 28.4 65 0.0014 25.0 2.9 35 59-93 136-170 (225)
184 TIGR03027 pepcterm_export puta 28.3 98 0.0021 21.7 3.7 15 77-91 148-162 (165)
185 PF05402 PqqD: Coenzyme PQQ sy 28.2 66 0.0014 18.9 2.4 19 30-48 29-47 (68)
186 TIGR00092 GTP-binding protein 27.6 33 0.00071 28.1 1.2 16 74-89 349-364 (368)
187 TIGR03802 Asp_Ala_antiprt aspa 27.6 1.8E+02 0.0039 24.8 5.6 60 15-91 214-276 (562)
188 PF11694 DUF3290: Protein of u 27.4 1.1E+02 0.0024 21.9 3.8 44 31-74 79-122 (149)
189 COG0012 Predicted GTPase, prob 27.4 39 0.00084 28.0 1.6 17 73-89 352-368 (372)
190 TIGR01393 lepA GTP-binding pro 27.1 2.7E+02 0.006 23.9 6.7 26 22-47 157-182 (595)
191 PF00842 Ala_racemase_C: Alani 26.8 86 0.0019 21.6 3.1 31 61-91 52-94 (129)
192 PF02311 AraC_binding: AraC-li 26.8 48 0.001 20.7 1.7 31 61-91 25-55 (136)
193 PF09358 UBA_e1_C: Ubiquitin-a 26.4 77 0.0017 21.8 2.8 21 23-45 37-57 (125)
194 KOG0324|consensus 26.4 86 0.0019 24.2 3.2 49 5-55 62-112 (214)
195 COG1917 Uncharacterized conser 26.2 75 0.0016 21.0 2.6 31 61-91 66-96 (131)
196 PF02991 Atg8: Autophagy prote 26.0 1.7E+02 0.0037 19.7 4.4 25 19-45 33-57 (104)
197 COG1886 FliN Flagellar motor s 26.0 1.4E+02 0.0031 20.8 4.1 35 31-72 84-118 (136)
198 COG1585 Membrane protein impli 25.8 76 0.0017 22.4 2.7 30 60-91 100-129 (140)
199 cd01797 NIRF_N amino-terminal 25.7 1.7E+02 0.0038 18.1 4.4 64 17-92 7-74 (78)
200 cd02974 AhpF_NTD_N Alkyl hydro 25.6 1.1E+02 0.0024 20.0 3.3 43 31-74 34-78 (94)
201 TIGR03680 eif2g_arch translati 25.5 3.6E+02 0.0077 21.7 6.9 66 21-92 172-251 (406)
202 TIGR03028 EpsE polysaccharide 25.5 1.5E+02 0.0032 22.2 4.3 51 29-89 181-234 (239)
203 PF06487 SAP18: Sin3 associate 25.4 47 0.001 23.1 1.5 74 16-89 32-118 (120)
204 COG4598 HisP ABC-type histidin 25.3 59 0.0013 25.4 2.2 25 72-96 20-44 (256)
205 PF09356 Phage_BR0599: Phage c 25.3 65 0.0014 20.6 2.1 26 67-92 27-52 (80)
206 PRK04000 translation initiatio 25.3 3.5E+02 0.0076 21.9 6.7 66 21-92 177-256 (411)
207 PRK06789 flagellar motor switc 25.0 1.2E+02 0.0027 19.4 3.3 42 23-72 13-54 (74)
208 TIGR00269 conserved hypothetic 24.7 46 0.001 22.0 1.3 29 31-59 40-68 (104)
209 cd02779 MopB_CT_Arsenite-Ox Th 24.5 54 0.0012 21.4 1.6 28 61-93 32-59 (115)
210 PHA02582 10 baseplate wedge su 24.4 84 0.0018 27.6 3.1 33 59-95 216-248 (604)
211 PRK14132 riboflavin kinase; Pr 24.4 49 0.0011 23.4 1.5 10 80-89 115-124 (126)
212 PRK05433 GTP-binding protein L 24.4 3.3E+02 0.0071 23.5 6.7 26 22-47 161-186 (600)
213 PF02601 Exonuc_VII_L: Exonucl 24.3 1.2E+02 0.0026 23.3 3.8 44 10-53 5-48 (319)
214 PRK11180 rluD 23S rRNA pseudou 24.3 72 0.0016 24.9 2.5 26 63-91 44-69 (325)
215 COG0317 SpoT Guanosine polypho 24.2 1.7E+02 0.0036 26.3 4.9 30 61-94 422-451 (701)
216 cd06095 RP_RTVL_H_like Retrope 24.2 55 0.0012 20.4 1.6 13 62-74 1-13 (86)
217 PF13684 Dak1_2: Dihydroxyacet 23.6 92 0.002 24.6 3.0 33 60-93 144-177 (313)
218 cd02790 MopB_CT_Formate-Dh_H F 23.6 58 0.0012 20.8 1.6 26 62-92 35-60 (116)
219 PF02196 RBD: Raf-like Ras-bin 23.5 1.2E+02 0.0027 18.7 3.1 20 26-45 16-35 (71)
220 cd06245 M14_CPD_III The third 23.3 1.5E+02 0.0033 23.9 4.3 38 32-69 274-311 (363)
221 PF11580 DUF3239: Protein of u 23.2 40 0.00087 23.8 0.9 34 49-83 8-41 (128)
222 PHA02609 uvsW.1 hypothetical p 23.2 32 0.00069 22.5 0.3 26 19-44 39-64 (76)
223 COG2824 PhnA Uncharacterized Z 23.2 56 0.0012 22.9 1.5 16 76-91 48-63 (112)
224 TIGR00492 alr alanine racemase 23.0 74 0.0016 24.9 2.4 29 63-91 296-335 (367)
225 COG3456 Predicted component of 22.5 81 0.0018 26.7 2.6 25 64-89 71-95 (430)
226 PF14533 USP7_C2: Ubiquitin-sp 22.2 74 0.0016 23.6 2.1 22 22-45 37-58 (213)
227 cd01617 DCX Ubiquitin-like dom 22.0 2.1E+02 0.0046 17.8 4.1 45 9-56 7-54 (80)
228 cd01089 PA2G4-like Related to 21.9 2.1E+02 0.0046 20.8 4.5 29 62-90 61-92 (228)
229 PF13180 PDZ_2: PDZ domain; PD 21.8 46 0.00099 20.3 0.8 29 61-89 36-67 (82)
230 PRK02079 pyrroloquinoline quin 21.6 1E+02 0.0022 20.1 2.5 31 17-47 26-65 (88)
231 COG3263 NhaP-type Na+/H+ and K 21.5 95 0.0021 27.0 2.9 29 62-92 442-470 (574)
232 PF01982 CTP-dep_RFKase: Domai 21.5 54 0.0012 23.0 1.2 10 80-89 110-119 (121)
233 cd02787 MopB_CT_ydeP The MopB_ 21.4 71 0.0015 20.6 1.7 28 62-94 31-58 (112)
234 PF07883 Cupin_2: Cupin domain 21.3 70 0.0015 18.3 1.5 30 61-90 21-50 (71)
235 PRK10475 23S rRNA pseudouridin 21.1 87 0.0019 24.6 2.4 23 63-89 32-54 (290)
236 smart00213 UBQ Ubiquitin homol 21.1 1.5E+02 0.0032 16.4 2.9 22 22-45 13-34 (64)
237 TIGR03859 PQQ_PqqD coenzyme PQ 20.9 1E+02 0.0022 19.4 2.3 17 30-46 43-59 (81)
238 PTZ00327 eukaryotic translatio 20.7 4E+02 0.0087 22.3 6.4 67 20-92 208-288 (460)
239 cd02558 PSRA_1 PSRA_1: Pseudou 20.5 1.1E+02 0.0023 23.1 2.7 25 63-91 3-27 (246)
240 PRK04950 ProP expression regul 20.5 97 0.0021 23.8 2.5 26 31-60 8-33 (213)
241 PTZ00062 glutaredoxin; Provisi 20.4 1.5E+02 0.0032 22.2 3.4 49 30-78 32-82 (204)
242 PF12141 DUF3589: Protein of u 20.2 76 0.0017 27.1 2.1 18 7-24 254-276 (498)
243 COG0787 Alr Alanine racemase [ 20.0 1.2E+02 0.0027 24.7 3.2 37 55-91 277-327 (360)
No 1
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=99.94 E-value=3.6e-27 Score=157.55 Aligned_cols=73 Identities=51% Similarity=0.940 Sum_probs=68.6
Q ss_pred EecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 24 LFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++...++||++||++|+++|++.++++|+++|++||+|+|||||+||++++|++|+|+|||+|+||||+|||
T Consensus 22 ~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 22 VLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred eccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 3454457999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=99.90 E-value=2.6e-24 Score=145.35 Aligned_cols=83 Identities=59% Similarity=0.920 Sum_probs=68.4
Q ss_pred CccCCCCceEEec-CCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 14 YFDSFPKPTVLFS-SYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 14 ~~~~~~~~~ve~~-~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
.|++-.++.+.++ .....|+++||++|++++...|+++|.+++++||||+||||+.||+++++.+|+|++||.|+|+|+
T Consensus 13 Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiST 92 (96)
T PF09138_consen 13 LFGNQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFIST 92 (96)
T ss_dssp GTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEET
T ss_pred HhCCceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEcc
Confidence 4666667788888 445799999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy9168 93 LHGG 96 (96)
Q Consensus 93 vaGG 96 (96)
+|||
T Consensus 93 LHGG 96 (96)
T PF09138_consen 93 LHGG 96 (96)
T ss_dssp TT--
T ss_pred CCCC
Confidence 9998
No 3
>KOG4146|consensus
Probab=99.84 E-value=4.7e-21 Score=129.48 Aligned_cols=82 Identities=39% Similarity=0.682 Sum_probs=71.5
Q ss_pred ccCCCCceEEec-CCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 15 FDSFPKPTVLFS-SYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 15 ~~~~~~~~ve~~-~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
|+.-..+.+-++ ....+||++||.++..+|.+.+..+|..+|++|||++|+||+.||++|+.++++|++||.|+|++++
T Consensus 19 fn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTl 98 (101)
T KOG4146|consen 19 FNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDSLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTL 98 (101)
T ss_pred ECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEec
Confidence 333333334444 3346899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9168 94 HGG 96 (96)
Q Consensus 94 aGG 96 (96)
|||
T Consensus 99 HGg 101 (101)
T KOG4146|consen 99 HGG 101 (101)
T ss_pred cCC
Confidence 998
No 4
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=99.81 E-value=8.9e-20 Score=118.01 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+++++++.. ++||++|++.|.++||.....+|+++|+++++++|+|||+.++...+ |+|+|||+|+|+||++||
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~--~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG--TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC--CCCCCCCEEEEeCCCcCC
Confidence 34556666554 79999999999999998888899999999999999999999988766 999999999999999998
No 5
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7e-19 Score=118.15 Aligned_cols=75 Identities=37% Similarity=0.668 Sum_probs=67.6
Q ss_pred eEEecCCCCCCHHHHHHHHHH-HcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKL-NKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~-~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++..+.-++.+|+.++++++. .|.+.+..+|.++|++|||++++||+.||++++..+++|+|||.|+|+|++|||
T Consensus 21 el~~~~~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfistlHGg 96 (96)
T COG5131 21 ELTREEVEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHGG 96 (96)
T ss_pred EEEEcccCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEecccCC
Confidence 556667778999999999988 333448899999999999999999999999999999999999999999999998
No 6
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=99.63 E-value=4.4e-16 Score=97.27 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=58.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++++.+. ++||++|++.|..+||... +++.+.|+|||+.++. ++.+|+|++||+|+|+||++||
T Consensus 13 ~~~~~~~~--~~tv~~ll~~l~~~~p~~~---------~~~~~~v~vN~~~v~~-~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPE--GSTVRDLLEALAERYPELA---------LRDRVAVAVNGEIVPD-DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESS--TSBHHHHHHHHCHHTGGGH---------TTTTEEEEETTEEEGG-GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCC--CCcHHHHHHHHHhhccccc---------cCccEEEEECCEEcCC-ccCCcCcCCCCEEEEECCCCCC
Confidence 34455555 9999999999999998655 6778999999999999 9999999999999999999998
No 7
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=99.62 E-value=9.7e-16 Score=96.49 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++++.+.+.||+||++.|..+||.. .+..++.+.|+|||+.++ .+++|++||+|+|+||++||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-------~~~~~~~~~v~vNg~~v~----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-------LEELLARVRIAVNGEYVR----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-------HHhhhhcEEEEECCeEcC----CCcccCCCCEEEEeCCCCCC
Confidence 34445555445899999999999999864 456778999999999998 68999999999999999998
No 8
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=99.55 E-value=1.5e-14 Score=92.50 Aligned_cols=67 Identities=24% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCCceEEecCCCC-CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 18 FPKPTVLFSSYLT-GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 18 ~~~~~ve~~~~~g-~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+++.+++...+ +||++|++.|.++||+ +++ .+..++|+||++.++ .+|+|++||+|+||||++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~----l~~----~~~~~~v~vn~~~v~----~~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE----LAA----SRGQVMVAVNEEYVT----DDALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch----hhh----hccceEEEECCEEcC----CCcCcCCCCEEEEeCCCCCC
Confidence 3444333333334 8999999999999974 332 356799999999987 38999999999999999998
No 9
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=99.53 E-value=2.9e-14 Score=91.84 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=53.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+++++++. .++||++|++.|.++||... ..+ ..++ +.+.||++- .+.+|+|+|||+|+||||++||
T Consensus 14 ~g~~~~~v~~-~~~tv~~l~~~L~~~~~~~~-~~~-~~~~----~~~aVN~~~----~~~~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 14 VGTDALELAA-DFPTVEALRQHLAQKGDRWA-LAL-EDGK----LLAAVNQTL----VSFDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred hCCceEEecC-CCCCHHHHHHHHHHhCccHH-hhh-cCCC----EEEEECCEE----cCCCCCCCCCCEEEEeCCCCCC
Confidence 4567777763 46999999999999997753 233 2343 569999854 3679999999999999999998
No 10
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=99.46 E-value=1.1e-13 Score=88.63 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=51.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+++...++||++|++.|..+||.+.+ ++..+.|+||++.+ +.+|+|+|||+|+|+||++||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~--------~~~~~~vavN~~~v----~~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEE--------VRSCCVLALNEEYT----TESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHH--------HhhCcEEEECCEEc----CCCcCcCCCCEEEEeCCCCCC
Confidence 33344333499999999999999976542 34468899999986 378999999999999999998
No 11
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=99.39 E-value=4.1e-13 Score=87.67 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++.++.|.+.+++..+.+..... + .+++|.++++.+.+++|+|+|||+|+||||++||
T Consensus 24 ~~~~~tv~~L~~~l~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 24 LTVGATVGELEELLPKEGERWLLALE---D--NIVVNAANNEFLVGLDTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHhccC---c--cceEEeeeceeeccccccCCCCCEEEEeCCCCCC
Confidence 45555555555555444332221111 1 6778999999999999999999999999999998
No 12
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=99.19 E-value=6.3e-11 Score=72.72 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=49.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
-++++++. ++|+.+|++.|.- ++.+.|.+||+-+......+|.|++||+|.|+|+++||
T Consensus 7 g~~~~~~~--~~tl~~ll~~l~~----------------~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 7 QQTLSLPD--GATVADALAAYGA----------------RPPFAVAVNGDFVARTQHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEECCC--CCcHHHHHHhhCC----------------CCCeEEEECCEEcCchhcccccCCCCCEEEEEeeccCC
Confidence 35566766 8999999997732 12477999999988778889999999999999999998
No 13
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=99.15 E-value=5.9e-11 Score=73.46 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=50.9
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.++++. ++||.+|++.|.-. ...+.|.|||+-+...++.+|+|++||+|.|||+++||
T Consensus 6 g~~~~~~~--~~tv~~ll~~l~~~---------------~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 6 GEPREVEE--GATLAELLEELGLD---------------PRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CeEEEcCC--CCCHHHHHHHcCCC---------------CCcEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 45566766 89999999988521 24688999999999888899999999999999999998
No 14
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=99.02 E-value=4.6e-10 Score=69.33 Aligned_cols=60 Identities=25% Similarity=0.188 Sum_probs=50.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++++. ++|+.||++.|.-. ...+.|.+|++-+.-.+..+|.|++||+|.|+|+++||
T Consensus 5 g~~~~~~~--~~tv~~ll~~l~~~---------------~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 5 GEPVEVED--GLTLAALLESLGLD---------------PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CeEEEcCC--CCcHHHHHHHcCCC---------------CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 46667766 89999999977421 13688999999988777888999999999999999998
No 15
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=98.95 E-value=2.8e-09 Score=67.25 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..++++++. +.||++|++.|. ++ ...+.|.+||+-+. .+|.|++||+|.|||+++||
T Consensus 14 ~~~~~~~~~--~~tv~~ll~~l~--~~-------------~~~v~v~vNg~iv~----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 14 IEKEIEWRK--GMKVADILRAVG--FN-------------TESAIAKVNGKVAL----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred cceEEEcCC--CCcHHHHHHHcC--CC-------------CccEEEEECCEECC----CCcCcCCCCEEEEEccccCC
Confidence 445667766 899999999883 11 13588999999873 48999999999999999998
No 16
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=98.84 E-value=8.1e-09 Score=63.81 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=46.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.++++ ..|+.+|++.|. + + ...+.|.+|++=+.-....+|+|+|||+|.|||+++||
T Consensus 8 ~~~~~~---~~tl~~Ll~~l~--~---------~----~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 8 ETLQTE---ATTLALLLAELD--Y---------E----GNWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred eEEEcC---cCcHHHHHHHcC--C---------C----CCeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence 455662 479999999771 1 0 02578999999988777789999999999999999998
No 17
>PRK06437 hypothetical protein; Provisional
Probab=98.76 E-value=1.7e-08 Score=63.52 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=44.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++++++. ++||+|||+.|. ++ ...+.|.+||+-+. .+|.|++||+|.|+|+++||
T Consensus 13 ~~~~i~~--~~tv~dLL~~Lg--i~-------------~~~vaV~vNg~iv~----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 13 KTIEIDH--ELTVNDIIKDLG--LD-------------EEEYVVIVNGSPVL----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred eEEEcCC--CCcHHHHHHHcC--CC-------------CccEEEEECCEECC----CceEcCCCCEEEEEecccCC
Confidence 4556655 899999999873 21 12567889999986 78999999999999999998
No 18
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=98.74 E-value=1.8e-08 Score=62.68 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=48.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
-++.+++. +.||.+||+.|.-.+ +++.|.+|++=+.--+..+|.|++||+|.|+++++||
T Consensus 7 g~~~~~~~--~~tl~~ll~~l~~~~---------------~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 7 DQPMQCAA--GQTVHELLEQLNQLQ---------------PGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CeEEEcCC--CCCHHHHHHHcCCCC---------------CcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence 34556655 889999998654321 3588999999877667778999999999999999998
No 19
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=98.59 E-value=8.6e-08 Score=58.95 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=45.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.++++. +.|+.+||+.|. ++ ...+.|.+||+=+.--...+|+|++||+|.|+++++||
T Consensus 8 ~~~~~~~--~~tl~~lL~~l~--~~-------------~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 8 EPRELPD--GESVAALLAREG--LA-------------GRRVAVEVNGEIVPRSQHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred eEEEcCC--CCCHHHHHHhcC--CC-------------CCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence 4456665 899999998753 11 12456889997666667789999999999999999998
No 20
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=98.41 E-value=9e-07 Score=54.99 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=44.2
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+..+++. +.|+.+||+.|. + -..+|.|.+|++=+..-+... .|++||+|.||++++||
T Consensus 8 ~~~~~~~--~~tl~~ll~~l~--~-------------~~~~vav~~N~~iv~r~~~~~-~L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 8 EQVEVDE--QTTVAALLDSLG--F-------------PEKGIAVAVDWSVLPRSDWAT-KLRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEEcCC--CCcHHHHHHHcC--C-------------CCCcEEEEECCcCcChhHhhh-hcCCCCEEEEEeeccCC
Confidence 3445555 799999999762 1 123688999999666655554 59999999999999998
No 21
>PRK07440 hypothetical protein; Provisional
Probab=98.37 E-value=5.9e-07 Score=56.94 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=49.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
-+.++++. +.||.+||+.|.- -..+|.|-+|++=+.--...+|.|++||.|.|+..++||
T Consensus 11 G~~~~~~~--~~tl~~lL~~l~~---------------~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 11 GETRTCSS--GTSLPDLLQQLGF---------------NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CEEEEcCC--CCCHHHHHHHcCC---------------CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 34566666 8999999986531 013789999999888888889999999999999999998
No 22
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=98.22 E-value=2.4e-06 Score=54.37 Aligned_cols=60 Identities=27% Similarity=0.262 Sum_probs=50.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.|+++++. +.|+.|||+.|.-+- +.+.|.+||.=+---+..++.|++||.|.|+.+++||
T Consensus 9 g~~~e~~~--~~tv~dLL~~l~~~~---------------~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GKEVEIAE--GTTVADLLAQLGLNP---------------EGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CEEEEcCC--CCcHHHHHHHhCCCC---------------ceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence 67788877 799999999775211 3688999999877667789999999999999999998
No 23
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=98.20 E-value=2.4e-06 Score=53.54 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=46.2
Q ss_pred eEEecCCCC-CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLT-GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g-~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..+++. + .||.|||+.|.- . ..++.|-+|++=+.--+..+|.|++||.|.|+..++||
T Consensus 9 ~~~~~~--~~~tv~~lL~~l~~--~-------------~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 9 QIEVPE--SVKTVAELLTHLEL--D-------------NKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred EEEcCC--CcccHHHHHHHcCC--C-------------CCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 345554 5 689999986531 0 12688999999888778889999999999999999998
No 24
>PRK01777 hypothetical protein; Validated
Probab=98.18 E-value=4.6e-06 Score=56.11 Aligned_cols=59 Identities=19% Similarity=0.082 Sum_probs=40.7
Q ss_pred EecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 24 LFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
+++..+|+||+|+|+.+. .+....++- +. .-.|.|||+... +|++|++||.|.|+||+.
T Consensus 20 ~l~vp~GtTv~dal~~sg--i~~~~pei~-----~~-~~~vgI~Gk~v~----~d~~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 20 RLTLQEGATVEEAIRASG--LLELRTDID-----LA-KNKVGIYSRPAK----LTDVLRDGDRVEIYRPLL 78 (95)
T ss_pred EEEcCCCCcHHHHHHHcC--CCccCcccc-----cc-cceEEEeCeECC----CCCcCCCCCEEEEecCCC
Confidence 444444999999999873 111111221 11 236899999985 589999999999999973
No 25
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=98.13 E-value=3.8e-06 Score=55.34 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=48.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
-+..+++. +.||.+||+.|. ++ ..+|.|.+||+=+.--....|.|++||.|.|+.+++||
T Consensus 25 G~~~~~~~--~~tl~~LL~~l~--~~-------------~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 25 DQSIQVDI--SSSLAQIIAQLS--LP-------------ELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CeEEEcCC--CCcHHHHHHHcC--CC-------------CceEEEEECCEEeCHHHcCcccCCCCCEEEEEEEecCC
Confidence 34556665 899999999752 21 12678999999888888889999999999999999998
No 26
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.93 E-value=1.9e-05 Score=63.31 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=49.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.++++. +.||.|||+.|. ++ ..+|.|.|||+-+.--+..+|+|+|||+|.||++++||
T Consensus 7 Gk~~el~e--~~TL~dLL~~L~--i~-------------~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 7 GEPRQVPA--GLTIAALLAELG--LA-------------PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CEEEecCC--CCcHHHHHHHcC--CC-------------CCeEEEEECCEECCHHHcCccccCCCCEEEEEEEecCC
Confidence 35556665 899999998762 11 12688999999999888899999999999999999998
No 27
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=97.51 E-value=0.00012 Score=47.89 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=42.0
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
+++..+...++||+++|+.|.-=++ ++ =.|+|||+.+.+ ++.+++||.|+++|.-
T Consensus 23 ~~~~~~~~~~~tvkd~IEsLGVP~t----EV----------~~i~vNG~~v~~----~~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIESLGVPHT----EV----------GLILVNGRPVDF----DYRLKDGDRVAVYPVF 77 (81)
T ss_pred CceEEecCCCCcHHHHHHHcCCChH----He----------EEEEECCEECCC----cccCCCCCEEEEEecc
Confidence 4566677779999999998863222 12 248899999865 6999999999999964
No 28
>PF06805 Lambda_tail_I: Bacteriophage lambda tail assembly protein I; InterPro: IPR010654 This family consists of several Bacteriophage lambda tail assembly protein I and related phage and bacterial sequences. Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=97.20 E-value=0.00094 Score=43.58 Aligned_cols=59 Identities=14% Similarity=-0.100 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 30 TGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..|.++.+..|+...|+.++. ..-.+.-.||++.---+..+..+++|++|.|+|-+.|+
T Consensus 24 v~t~~Eai~AL~~~~pGf~~~--------~~v~~~~~ng~~~l~~~~~~~~~~~g~~I~IvPvi~Gs 82 (82)
T PF06805_consen 24 VDTPAEAIRALCVQLPGFEQF--------FAVFIGKRNGEDELEARWHDERPKGGSVIRIVPVIAGS 82 (82)
T ss_pred cCCHHHHHHHHHhcChhhhhh--------cceEEeeeCChhhhhhhhhcccCCCCCEEEEEEecCCC
Confidence 689999999999999877554 22345667766653222223679999999999999996
No 29
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=96.90 E-value=0.0019 Score=39.51 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=39.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+..+++. |+|+.|+.+.+..... +..+...|||+-|. ++++|++||+|.|+
T Consensus 8 G~~~~~~~--g~T~~d~A~~I~~~l~-------------~~~~~A~Vng~~vd----l~~~L~~~d~v~ii 59 (60)
T PF02824_consen 8 GSIKELPE--GSTVLDVAYSIHSSLA-------------KRAVAAKVNGQLVD----LDHPLEDGDVVEII 59 (60)
T ss_dssp SCEEEEET--TBBHHHHHHHHSHHHH-------------HCEEEEEETTEEEE----TTSBB-SSEEEEEE
T ss_pred CCeeeCCC--CCCHHHHHHHHCHHHH-------------hheeEEEEcCEECC----CCCCcCCCCEEEEE
Confidence 34557777 9999999998876542 12466789997764 68999999999987
No 30
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=96.80 E-value=0.009 Score=32.32 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=40.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCC-cccccCCCCEEEEeec
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGE-LTYELKENDTIMFIST 92 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~G-ldT~L~dgD~V~iiP~ 92 (96)
.+++.++ ...|++++++.+.++++.. .....+++|+...+-..- .++.+.+|++|.+.++
T Consensus 9 ~~~~~~~--~~~tv~~l~~~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 69 (69)
T cd00196 9 TVELLVP--SGTTVADLKEKLAKKLGLP-----------PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVPR 69 (69)
T ss_pred EEEEEcC--CCCcHHHHHHHHHHHHCcC-----------hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 3444444 4899999999999998511 113445667765543332 3689999999999874
No 31
>KOG3474|consensus
Probab=96.32 E-value=0.0027 Score=41.79 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=45.2
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.-++.+++++-.+.++.|-.+||.+.+ ++.-+...+|.+-- --|....|..-|+|+||||++||
T Consensus 21 ~ai~~Pe~s~~ee~~deil~kfPaLee--------i~k~mmLAldeEYa--np~D~~~l~~~dEiAiIPPiSGG 84 (84)
T KOG3474|consen 21 EAIDFPEESDTEECLDEILEKFPALEE--------IEKCMMLALDEEYA--NPGDRAELQHFDEIAIIPPISGG 84 (84)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccHHH--------HHHHhheehhhhhc--CCCCceeeEeeceeeEcCCCCCC
Confidence 344444599999999999999997632 33334455554422 13455678889999999999998
No 32
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=95.77 E-value=0.075 Score=29.65 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+.++++. ++|+.++++.+...++ +..+.+.+||+-++ ++++|.+||+|.|+
T Consensus 8 ~~~~~~~~--g~t~~~~~~~~~~~~~-------------~~~~~~~vn~~~~~----l~~~l~~~~~i~~i 59 (60)
T cd01616 8 GSAVELPK--GATAMDFALKIHTDLG-------------KGFIGALVNGQLVD----LSYTLQDGDTVSIV 59 (60)
T ss_pred CCEEEcCC--CCCHHHHHHHHHHHHH-------------hheEEEEECCEECC----CCcCcCCCCEEEEe
Confidence 35566665 8999999987765331 12356778986543 57999999999987
No 33
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=95.76 E-value=0.042 Score=35.35 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=39.4
Q ss_pred ccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEE
Q psy9168 8 EKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTI 87 (96)
Q Consensus 8 ~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V 87 (96)
.++..|-|+ +.+.++. |+||.|+...+-.........-..- +-.+=+||+- -|++.+|+|||+|
T Consensus 8 ~~g~~~d~~----~~liL~~--GaTV~D~a~~iH~di~~~f~~A~v~------g~s~~~~gq~----Vgl~~~L~d~DvV 71 (75)
T cd01666 8 PKGQEPDFD----EPVILRR--GSTVEDVCNKIHKDLVKQFKYALVW------GSSVKHSPQR----VGLDHVLEDEDVV 71 (75)
T ss_pred CCCCCCCCC----CCEEECC--CCCHHHHHHHHHHHHHHhCCeeEEe------ccCCcCCCeE----CCCCCEecCCCEE
Confidence 344445443 4567877 9999999998775432211100000 0011124443 4789999999999
Q ss_pred EEe
Q psy9168 88 MFI 90 (96)
Q Consensus 88 ~ii 90 (96)
.|+
T Consensus 72 eI~ 74 (75)
T cd01666 72 QIV 74 (75)
T ss_pred EEe
Confidence 986
No 34
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=95.65 E-value=0.058 Score=31.27 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+.++++. +.|+.++++.+.... . +..+.+.+||+-++ ++++|++||.|.++
T Consensus 8 g~~~~~~~--~~t~~~~~~~~~~~~---~----------~~~va~~vng~~vd----l~~~l~~~~~ve~v 59 (60)
T cd01668 8 GEIIELPA--GATVLDFAYAIHTEI---G----------NRCVGAKVNGKLVP----LSTVLKDGDIVEII 59 (60)
T ss_pred CCEEEcCC--CCCHHHHHHHHChHh---h----------hheEEEEECCEECC----CCCCCCCCCEEEEE
Confidence 34456655 899999888654321 1 12356789999765 45999999999876
No 35
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=94.49 E-value=0.16 Score=30.86 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=43.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
+...+++++......||++|-+.|.++.. ..+-+|+- +|+ ++-++.. | .++.+++|+.|.++....
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~-~g~------~L~d~~t---l--~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDDKT---A--ADYKLEGGSVLHLVLALR 74 (76)
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE-CCe------EccCCCC---H--HHcCCCCCCEEEEEEEcc
Confidence 34445555555568999999999988763 22223332 222 1222222 2 357899999999999998
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 75 gg 76 (76)
T cd01806 75 GG 76 (76)
T ss_pred CC
Confidence 87
No 36
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=94.49 E-value=0.17 Score=34.83 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=44.9
Q ss_pred eeecCcc-CCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCC-CccceecCCccccceEEEEcCcCccccCCcccc
Q psy9168 3 WTFPLEK-NHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTE-RPELFVQGDSVRPGILVLINEADWELYGELTYE 80 (96)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~-~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~ 80 (96)
|.|--++ .-.|||++| +++...+.||-|+|.++.++.-+. .-+ ......+=..=.+.|||+..-.= .|.
T Consensus 5 ~R~~~~~~~~~~~~~~y-----~v~~~~~~tVLd~L~~Ik~~~D~sLafr-~sCr~giCGsCam~ING~~~LAC---~t~ 75 (110)
T PF13085_consen 5 FRFDPESDEGEPYYQEY-----EVPVEPGMTVLDALNYIKEEQDPSLAFR-YSCRSGICGSCAMRINGRPRLAC---KTQ 75 (110)
T ss_dssp EE--TTSTTSS-EEEEE-----EEEGGSTSBHHHHHHHHHHHT-TT--B---SSSSSSSSTTEEEETTEEEEGG---GSB
T ss_pred EEcCCCCCCCCCeEEEE-----EecCCCCCcHHHHHHHHHhccCCCeEEE-ecCCCCCCCCCEEEECCceecce---eeE
Confidence 3444433 238888876 455556999999999999987322 111 11111222345688999984321 355
Q ss_pred cCCCC-----EEEEee
Q psy9168 81 LKEND-----TIMFIS 91 (96)
Q Consensus 81 L~dgD-----~V~iiP 91 (96)
+++.. .|.|=|
T Consensus 76 v~~~~~~~~~~i~IeP 91 (110)
T PF13085_consen 76 VDDLIEKFGNVITIEP 91 (110)
T ss_dssp GGGCTTSETBEEEEEE
T ss_pred chhccCCCcceEEEEE
Confidence 65554 566655
No 37
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=94.09 E-value=0.15 Score=32.18 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=39.7
Q ss_pred eEEecCCCCCCHHHHHHHHHHHc--CCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNK--LTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~--~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++++. .+||++|=+.++++. +..+.++... |+ +| .+. .| .++-+++|+.|.+++++-||
T Consensus 15 ~l~v~~--~~TV~~LK~~I~~~~~~~~~~qrL~~~-Gk------~L-~d~---~L--~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 15 DLSVPP--DETVEGLKKRISQRLKVPKERLALLHR-ET------RL-SSG---KL--QDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred EEEECC--cCHHHHHHHHHHHHhCCChHHEEEEEC-Cc------CC-CCC---cH--HHcCCCCCCEEEEEeecccc
Confidence 345555 899999999998875 3333344322 33 11 221 13 25779999999999999887
No 38
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=94.08 E-value=0.2 Score=32.07 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred ecCccCCC-------CCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCc
Q psy9168 5 FPLEKNHT-------PYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGEL 77 (96)
Q Consensus 5 ~~~~~~~~-------~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~Gl 77 (96)
||-.+.++ |.| .+-+.++. |+|+.|+...+-...... -++. .+-+ .-.-|.
T Consensus 5 Ypv~~~~~~~~~~~g~d~----~~~~~l~~--g~tv~d~a~~IH~d~~~~--F~~A-----------~v~~---~~~vg~ 62 (76)
T cd04938 5 YPVKNIHTFTNGSGGNVF----RDCVLVKK--GTTVGDVARKIHGDLEKG--FIEA-----------VGGR---RRLEGK 62 (76)
T ss_pred EEcCCCccccCcCCCCcc----ceeEEEcC--CCCHHHHHHHHhHHHHhc--cEEE-----------EEcc---CEEECC
Confidence 56555554 444 34567777 899999998877644221 1111 1111 234688
Q ss_pred ccccCCCCEEEEe
Q psy9168 78 TYELKENDTIMFI 90 (96)
Q Consensus 78 dT~L~dgD~V~ii 90 (96)
+..|+|||+|.|+
T Consensus 63 d~~l~d~DVv~i~ 75 (76)
T cd04938 63 DVILGKNDILKFK 75 (76)
T ss_pred CEEecCCCEEEEE
Confidence 9999999999985
No 39
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=93.68 E-value=0.24 Score=31.81 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=35.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.-+.++. |+|+.|+-..+-.........- ++..|++ .-|++++|+|||+|.|+
T Consensus 23 d~~~l~~--GaTv~D~A~~IHtdi~~~f~~A-----------i~~k~~~----~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 23 DAFLLPK--GSTARDLAYAIHTDIGDGFLHA-----------IDARTGR----RVGEDYELKHRDVIKIV 75 (76)
T ss_pred ceEEECC--CCCHHHHHHHHHHHHHhcceee-----------EEeeCCE----EeCCCcEecCCCEEEEe
Confidence 3456777 9999999998776553221111 1122443 45789999999999997
No 40
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=93.53 E-value=0.31 Score=37.54 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=47.6
Q ss_pred eeecCccCCCCCccCCCCceEEec-CCCCCCHHHHHHHHHHHcCCC--CccceecCC--ccccceEEEEcCcCc-----c
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFS-SYLTGTIKGLIEWLKLNKLTE--RPELFVQGD--SVRPGILVLINEADW-----E 72 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~-~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g--~lr~~V~VlVNg~Di-----~ 72 (96)
|.|. .+.-.|||.+| +++ ..++.||-|+|.+|.+++... ..--|...- .+=..=-+.|||+.. +
T Consensus 8 ~R~~-~~~~~~~~q~y-----~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~~~ 81 (250)
T PRK07570 8 WRQK-GPDDKGKFETY-----EVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRGT 81 (250)
T ss_pred EecC-CCCCCceeEEE-----EecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCccc
Confidence 5554 34456888877 444 345899999999998765111 111122111 122234589999984 2
Q ss_pred ccCCcc-cccCCCCEEEEeec
Q psy9168 73 LYGELT-YELKENDTIMFIST 92 (96)
Q Consensus 73 ~L~Gld-T~L~dgD~V~iiP~ 92 (96)
+---.. -.+++|++|+|-|-
T Consensus 82 LAC~t~~~~~~~~~~i~iePl 102 (250)
T PRK07570 82 TTCQLHMRSFKDGDTITIEPW 102 (250)
T ss_pred chhhhhhhhcCCCCeEEEEEC
Confidence 221110 02456788888775
No 41
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=93.45 E-value=0.23 Score=36.90 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=47.0
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHc-CCCCccceecCCccccce----EEEEcCcCccccCCc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNK-LTERPELFVQGDSVRPGI----LVLINEADWELYGEL 77 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~V----~VlVNg~Di~~L~Gl 77 (96)
|.|--+..-.|||+.| +++. ..+.||-++|..+.+.+ |.+.-+ ..-+.|+ .|.|||+.+. .-
T Consensus 2 ~R~~~~~~~~~~~~~~---~v~~--~~~~tvl~~l~~i~~~~~~~l~~~-----~~C~~g~Cg~C~v~vnG~~~l---aC 68 (220)
T TIGR00384 2 LRFNPDVDEKPHLQSY---EVPA--DEGMTVLDALNYIKDEQDPSLAFR-----RSCRNGICGSCAMNVNGKPVL---AC 68 (220)
T ss_pred cCcCCCCCCCceeEEE---EEeC--CCCCcHHHHHHHHHHhcCCCceee-----cccCCCCCCCCeeEECCEEhh---hh
Confidence 4555455668899876 3444 45999999999998654 322111 1122233 5789998653 34
Q ss_pred ccccCC-CCE-EEEee
Q psy9168 78 TYELKE-NDT-IMFIS 91 (96)
Q Consensus 78 dT~L~d-gD~-V~iiP 91 (96)
.|++.+ |.. |+|-|
T Consensus 69 ~t~v~~~g~~~~~iep 84 (220)
T TIGR00384 69 KTKVEDLGQPVMKIEP 84 (220)
T ss_pred hChHHHcCCCcEEEee
Confidence 688888 876 44433
No 42
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=93.06 E-value=0.43 Score=31.58 Aligned_cols=56 Identities=16% Similarity=0.013 Sum_probs=27.5
Q ss_pred EecCCCCCCHHHHHHH--HHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 24 LFSSYLTGTIKGLIEW--LKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~--L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
.+..++|+||.|.|+. |.+.||+..- + ..+ +=|=|+-+ .++++|++||.|-|.=|+
T Consensus 17 ~l~vp~GtTv~~Ai~~Sgi~~~~p~idl----~--~~~----vGIfGk~~----~~d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 17 TLEVPEGTTVAQAIEASGILEQFPEIDL----E--KNK----VGIFGKLV----KLDTVLRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEETT-BHHHHHHHHTHHHH-TT--T----T--TSE----EEEEE-S------TT-B--TT-EEEEE-S-
T ss_pred EEECCCcCcHHHHHHHcCchhhCcccCc----c--cce----eeeeeeEc----CCCCcCCCCCEEEEeccC
Confidence 3344449999999985 6778876521 1 111 22234433 378999999999998664
No 43
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=91.96 E-value=0.4 Score=28.99 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=40.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+......||.+|-+.+.++.. ..+-+|+. +|+ +|-++. .| .++.+++|+.|.++..+-||
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~-~g~------~L~d~~---~L--~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL--SDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE-CCE------ECCCCC---cH--HHcCCCCCCEEEEEEEccCC
Confidence 4444444448999999999988753 22334442 232 122222 22 35679999999999999988
No 44
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=91.73 E-value=0.36 Score=29.86 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=42.9
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 16 DSFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 16 ~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
.++..+++.++.....||++|-+.+.+..+ ....+|. -+|+ +|-++ +.| .++-+++|+.|.+....
T Consensus 4 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~G~------~L~D~---~tL--~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 4 RNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FEGR------PMEDE---HPL--GEYGLKPGCTVFMNLRL 71 (74)
T ss_pred ECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECCE------ECCCC---CCH--HHcCCCCCCEEEEEEEc
Confidence 344445544444448999999999987653 2222333 2232 12222 333 35789999999999999
Q ss_pred CCC
Q psy9168 94 HGG 96 (96)
Q Consensus 94 aGG 96 (96)
.||
T Consensus 72 ~gg 74 (74)
T cd01810 72 RGG 74 (74)
T ss_pred cCC
Confidence 887
No 45
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=91.21 E-value=0.5 Score=36.07 Aligned_cols=80 Identities=9% Similarity=0.013 Sum_probs=46.0
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcC-CCCccceecCCccccceEEEEcCcCccccCCccccc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKL-TERPELFVQGDSVRPGILVLINEADWELYGELTYEL 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~-~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L 81 (96)
|.|--++.-.|||+.| +++..++.||-++|..+.+... .+.-+-+ -...+=..=.+.|||+... .-.|.+
T Consensus 12 ~R~~~~~~~~~~~~~~-----~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~-C~~giCGsC~v~InG~~~l---aC~t~~ 82 (244)
T PRK12385 12 LRYNPEVDTEPHSQTY-----EVPYDETTSLLDALGYIKDNLAPDLSYRWS-CRMAICGSCGMMVNNVPKL---ACKTFL 82 (244)
T ss_pred EeeCCCCCCCceeEEE-----EeeCCCCCcHHHHHHHHHHhcCCCceeccC-CCCCcCCCCcceECccChh---hHhhHH
Confidence 4555555667898766 4444559999999999998662 2211111 1111111245888998754 334666
Q ss_pred CC-CCEEEEee
Q psy9168 82 KE-NDTIMFIS 91 (96)
Q Consensus 82 ~d-gD~V~iiP 91 (96)
++ ++.+.|-|
T Consensus 83 ~~~~~~~~ieP 93 (244)
T PRK12385 83 RDYTGGMKVEA 93 (244)
T ss_pred HHcCCCeEEee
Confidence 65 23455544
No 46
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=90.99 E-value=0.7 Score=34.63 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=46.2
Q ss_pred eeecCccCCCCCccCCCCceEEecCC-CCCCHHHHHHHHHHHc-CCCCccceecCCccccce----EEEEcCcCccccCC
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSY-LTGTIKGLIEWLKLNK-LTERPELFVQGDSVRPGI----LVLINEADWELYGE 76 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~-~g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~V----~VlVNg~Di~~L~G 76 (96)
|.|--+..-.|||+.+ +++.. ++.||-++|..+.+.. |.+.-+. ..+.++ .|.|||+.+. .
T Consensus 5 ~r~~~~~~~~~~~~~~-----~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~-----~c~~g~Cg~C~v~vnG~~~l---a 71 (232)
T PRK05950 5 YRYNPDVDANPRMQTY-----EVDVDECGPMVLDALIKIKNEIDPTLTFRR-----SCREGVCGSDAMNINGKNGL---A 71 (232)
T ss_pred EecCCCCCCCceeEEE-----EeCCCCCCCHHHHHHHHhCCccCCcceeeC-----CCCCCCCCCCEEEECCcCcc---c
Confidence 5565555667899866 34444 5899999999987544 3221111 122233 6899998753 2
Q ss_pred cccccCC--CCEEEEee
Q psy9168 77 LTYELKE--NDTIMFIS 91 (96)
Q Consensus 77 ldT~L~d--gD~V~iiP 91 (96)
=.|++.+ +++++|=|
T Consensus 72 C~t~~~~~~~~~~tiep 88 (232)
T PRK05950 72 CITPISDLKKGKIVIRP 88 (232)
T ss_pred hhChHhHcCCCeEEEEE
Confidence 3466655 56666654
No 47
>PRK11507 ribosome-associated protein; Provisional
Probab=90.88 E-value=0.21 Score=32.17 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=34.1
Q ss_pred EecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 24 LFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++...+-+++.++|+...---.+.....|..+| .|.|||+- +.-- -.+|.+||.|.|
T Consensus 5 ~l~~~e~I~L~QlLK~~~~v~SGG~AK~~I~eg------~V~VNGev-e~rR--gkKl~~GD~V~~ 61 (70)
T PRK11507 5 SLGKHPHVELCDLLKLEGWSESGAQAKIAIAEG------QVKVDGAV-ETRK--RCKIVAGQTVSF 61 (70)
T ss_pred ecCCCCeEEHHHHHhhhCcccChHHHHHHHHcC------ceEECCEE-eccc--CCCCCCCCEEEE
Confidence 444444588999998764333222222232333 48899983 2222 358999999987
No 48
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=90.05 E-value=1.2 Score=35.08 Aligned_cols=79 Identities=6% Similarity=0.074 Sum_probs=45.0
Q ss_pred eeecCccCCCCCccCCCCceEEecCC-CCCCHHHHHHHHHHHcCCCCccceecC--CccccceEEEEcCcCccccCCccc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSY-LTGTIKGLIEWLKLNKLTERPELFVQG--DSVRPGILVLINEADWELYGELTY 79 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~-~g~TV~dLL~~L~~~~~~~~~~lf~~~--g~lr~~V~VlVNg~Di~~L~GldT 79 (96)
|.|--++.-.|||++| +++.. .+.||-|+|.+|.++..+.- -|... ..+=..=-+.|||+..-. =.|
T Consensus 49 ~R~~p~~~~~~~~~~y-----~v~~~~~~~tVLd~L~~Ik~~~D~sL--sfr~sCr~giCGsCam~ING~p~LA---C~t 118 (276)
T PLN00129 49 YRWNPDNPGKPHLQSY-----KVDLNDCGPMVLDVLIKIKNEQDPSL--TFRRSCREGICGSCAMNIDGKNTLA---CLT 118 (276)
T ss_pred EeeCCCCCCCceeEEE-----EeCCCCCCchHHHHHHHHHHcCCCCe--EEeccCCCCCCCCCeeEECCccccc---ccc
Confidence 3454445557899877 44443 37999999999998654321 12111 112224568899997522 135
Q ss_pred ccCCC--CEEEEee
Q psy9168 80 ELKEN--DTIMFIS 91 (96)
Q Consensus 80 ~L~dg--D~V~iiP 91 (96)
.|++. ++|.|=|
T Consensus 119 ~v~~~~~~~i~ieP 132 (276)
T PLN00129 119 KIDRDESGPTTITP 132 (276)
T ss_pred cHhhcCCCcEEEEE
Confidence 55543 3555544
No 49
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.04 E-value=0.32 Score=30.13 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.+||--+. .|++|++||+|.+|+
T Consensus 32 ~I~NGF~~~----~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 32 VILNGFPTK----EDIELKEGDEVFLIK 55 (57)
T ss_pred EEEcCcccC----CccccCCCCEEEEEe
Confidence 456887653 578999999999986
No 50
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=88.45 E-value=0.36 Score=31.33 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+-.|+.+||+.+.-...+.....|..+| .|+|||+--.- -..+|.+||+|.|
T Consensus 10 e~I~L~qlLK~~g~i~sGG~AK~~i~eg------~V~vNGe~EtR---RgkKlr~gd~V~i 61 (73)
T COG2501 10 EFITLGQLLKLAGLIESGGQAKAFIAEG------EVKVNGEVETR---RGKKLRDGDVVEI 61 (73)
T ss_pred ceEEHHHHHHHhCcccCcHHHHHHHHCC------eEEECCeeeec---cCCEeecCCEEEE
Confidence 3589999999886554444444444444 58999985322 2368999999987
No 51
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=88.40 E-value=1 Score=34.37 Aligned_cols=73 Identities=10% Similarity=0.002 Sum_probs=42.3
Q ss_pred cCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceec--CCccccceEEEEcCcCccccCCcccccCC-CC
Q psy9168 9 KNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKE-ND 85 (96)
Q Consensus 9 ~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~--~g~lr~~V~VlVNg~Di~~L~GldT~L~d-gD 85 (96)
+.-.|||++| +|+. ..+.||-|+|.+|.++..+. --|.- ...+=..=-+.|||+..-.= .|.+++ ++
T Consensus 17 ~~~~~~~~~y---~v~~--~~~~tvLdaL~~Ik~~~D~s--L~fr~sCr~giCGsCam~ING~~~LAC---~t~v~~~~~ 86 (239)
T PRK13552 17 PGSKPHMVTY---QLEE--TPGMTLFIALNRIREEQDPS--LQFDFVCRAGICGSCAMVINGRPTLAC---RTLTSDYPD 86 (239)
T ss_pred CCCCcceEEE---EecC--CCCCCHHHHHHHHHhcCCCC--eeEeccCCCCCCCCceeEECCeEhhhh---hccHhhcCC
Confidence 3456899887 3444 45999999999999865432 11211 11122244588999985221 244444 22
Q ss_pred -EEEEee
Q psy9168 86 -TIMFIS 91 (96)
Q Consensus 86 -~V~iiP 91 (96)
+|.|=|
T Consensus 87 ~~i~ieP 93 (239)
T PRK13552 87 GVITLMP 93 (239)
T ss_pred CcEEEEE
Confidence 566655
No 52
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=88.07 E-value=2.3 Score=32.85 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=35.0
Q ss_pred CCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCc
Q psy9168 12 TPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADW 71 (96)
Q Consensus 12 ~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di 71 (96)
.|||++| +++...+.||-|+|.+|.+..-+...--..-...+=..=-+.|||+..
T Consensus 16 ~p~~~~y-----ev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~pr 70 (234)
T COG0479 16 KPYWQTY-----EVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPR 70 (234)
T ss_pred CcceEEE-----EecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccc
Confidence 7899877 666667999999999999654322111111112233344588899985
No 53
>PF01561 Hanta_G2: Hantavirus glycoprotein G2; InterPro: IPR002532 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [], G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein.; GO: 0030683 evasion by virus of host immune response, 0044423 virion part
Probab=86.75 E-value=0.6 Score=39.38 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=34.6
Q ss_pred CCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCccc
Q psy9168 12 TPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTY 79 (96)
Q Consensus 12 ~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT 79 (96)
+-||.||...+.++.. .+-++.+.++.+|.+|+|+|| +|+++-+-.+.
T Consensus 271 ~DsfqSFN~t~~hiT~-------------------~~LEw~Dpds~~rdhINv~v~-rDi~f~dl~en 318 (485)
T PF01561_consen 271 KDSFQSFNVTEPHITA-------------------NQLEWKDPDSSLRDHINVLVN-RDISFQDLSEN 318 (485)
T ss_pred cccceeeeccCceeec-------------------ccceEeCCCCcccccEEEEEc-ccccchhcccC
Confidence 4566666666666644 133677889999999999999 99998654333
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=86.65 E-value=4.5 Score=25.83 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=43.6
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCC-cccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGE-LTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~G-ldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......|++.|.+.++++..-.. ..+..+-||+.++.-.- .+.-+++||.|.++-..-||
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~-----------~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSM-----------NSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCc-----------cceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 34455555558999999999998874221 13445557766543211 23459999999999888887
No 55
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=86.13 E-value=2 Score=28.78 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=43.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
....+++.+......||.+|-+.|.++.+ ....+|.. +|+ +|-+++- | .++.+++|+.|.+..++-
T Consensus 34 ~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~-~Gk------~L~D~~t---L--~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 34 TLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW-NNM------ELEDEYC---L--NDYNISEGCTLKLVLAMR 101 (103)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCCc---H--HHcCCCCCCEEEEEEecC
Confidence 33455555555558999999999988763 22223332 222 2223332 2 357899999999999988
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 102 GG 103 (103)
T cd01802 102 GG 103 (103)
T ss_pred CC
Confidence 87
No 56
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=85.47 E-value=2 Score=34.07 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCCccCCCCceEEecCCCCCCHHHHHHHHHHHcC-CCCccceecCCccccceEEEEcCcCccccCCcccccCC-------
Q psy9168 12 TPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKL-TERPELFVQGDSVRPGILVLINEADWELYGELTYELKE------- 83 (96)
Q Consensus 12 ~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~-~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~d------- 83 (96)
.|||++| +|+++. +.||-|+|..+....+ .+.-+--...| .=..-.|.|||+..- -=.|++.+
T Consensus 15 ~p~~~~~---~v~~~~--~~tvL~~l~~i~~~~d~tL~~~~~c~~~-~Cg~C~v~inG~~~l---aC~t~v~~~~~~~~~ 85 (329)
T PRK12577 15 APYVQTY---TLEVEP--GNTILDCLNRIKWEQDGSLAFRKNCRNT-ICGSCAMRINGRSAL---ACKENVGSELARLSD 85 (329)
T ss_pred CCeEEEE---EEECCC--CChHHHHHHHhCCcCCCCcEEcCCCCCC-CCCCCEEEECCeeec---Ccccchhhhhccccc
Confidence 7898875 455554 9999999999988774 33111100111 112345889998532 22355544
Q ss_pred -----CCEEEEeec
Q psy9168 84 -----NDTIMFIST 92 (96)
Q Consensus 84 -----gD~V~iiP~ 92 (96)
+++|.|=|-
T Consensus 86 ~~~~~~~~i~iePl 99 (329)
T PRK12577 86 SNSGAIPEITIAPL 99 (329)
T ss_pred cccCCCCeEEEEEC
Confidence 367777653
No 57
>PTZ00044 ubiquitin; Provisional
Probab=85.38 E-value=3.4 Score=25.12 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
.+..+++.+......||.+|=+.|.++..- ..-+|+- +|+. |-|+.. | .++.+++|+.|.++...-
T Consensus 7 ~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~~------L~d~~~---l--~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 7 TLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY-SGKQ------MSDDLK---L--SDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCEE------ccCCCc---H--HHcCCCCCCEEEEEEEcc
Confidence 344445545555589999999999887742 2334442 3332 323333 2 356899999999999988
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 75 gg 76 (76)
T PTZ00044 75 GG 76 (76)
T ss_pred CC
Confidence 87
No 58
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=84.68 E-value=1.8 Score=27.88 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=28.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+.|+++. .+|+++|.+.+.+.++-. .-.++.+... ...+ ..-+++-+. +.-|+.||.|-+.|
T Consensus 15 ~~Rie~~~--~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~-~~~l-~s~~~~tl~-----~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 15 MKRIEVSP--SSTLSDLKEKISEQLSIPDSSQSLSKDRNN-KEEL-KSSDSKTLS-----SLGLKHGDMLYLKP 79 (80)
T ss_dssp EEEEEE-T--TSBHHHHHHHHHHHS---TTT---BSSGGG-GGCS-SS-TT-CCC-----CT---TT-EEE---
T ss_pred CEEEEcCC--cccHHHHHHHHHHHcCCCCcceEEEecCCC-Cccc-ccCCcCCHH-----HcCCCCccEEEEec
Confidence 35688877 899999999999988644 2233332211 1000 001222222 35799999998776
No 59
>KOG1769|consensus
Probab=84.55 E-value=6.6 Score=26.87 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=44.1
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~vaGG 96 (96)
++++...-.+.++-|+++-+++-+-.- ..+.++.||+.|+-. +|| .++||+|..+-+--||
T Consensus 32 ~~~Fkikr~t~LkKLM~aYc~r~Gl~~-----------~s~RFlFdG~rI~~~---~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 32 VVVFKIKRHTPLKKLMKAYCERQGLSM-----------NSLRFLFDGQRIRET---HTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEeecCChHHHHHHHHHHHcCCcc-----------ceEEEEECCcCcCCC---CChhhhCCcCCcEEEEEeecccC
Confidence 445555557788999998888774322 135678899998643 455 8999999998877776
No 60
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=84.25 E-value=0.67 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=18.6
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
--++|||+.+. .+..++|++||+|.|
T Consensus 42 ngt~vng~~l~--~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLG--PGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEES--STSEEEE-TTEEEEE
T ss_pred CcEEECCEEcC--CCCEEECCCCCEEEc
Confidence 33677997664 467799999999986
No 61
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=83.83 E-value=1.2 Score=26.47 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=18.6
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
|+|||+-+. ...+.|+.||+|.|
T Consensus 36 V~VNg~~~~---~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELEN---RRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEcc---CCCCCCCCCCEEEe
Confidence 788999653 44689999999985
No 62
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=82.17 E-value=6.5 Score=21.66 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.2
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+..+++. ++|..++++.+....+ +.-+...+||+-++ +++++.+++.|.++-
T Consensus 9 ~~~~~~~--~~t~~~~~~~~~~~~~-------------~~~v~~~vng~~~d----L~~~l~~~~~ie~i~ 60 (61)
T cd01667 9 SVKEFPK--GTTPLDIAKSISPGLA-------------KKAVAAKVNGELVD----LSRPLEEDCELEIIT 60 (61)
T ss_pred CEEEeCC--CCCHHHHHHHHHHHHH-------------hheEEEEECCEEec----CCcCcCCCCEEEEEe
Confidence 4456655 8999998887765331 12356678888644 568999999998863
No 63
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=81.97 E-value=7.8 Score=23.94 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=40.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+.+......||.+|=+.|....+ ..+.+|.-. |+ ++-|++. | .++.+++|+.|.++...-||
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~-G~------~L~d~~t---L--~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE-GI------FIKDSNS---L--AYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC-CE------EcCCCCc---H--HHcCCCCCCEEEEEEecCCC
Confidence 34454555558999999998877653 223334322 21 3333333 3 25679999999999887665
No 64
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=81.93 E-value=0.55 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+-.++.+||+...-.-.+.....|..+| .|+|||+--.- -..+|.+||.|.|
T Consensus 6 e~I~L~qlLK~~glv~sGGeAK~~I~~g------~V~VNGe~e~r---rg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 6 EYITLGQLLKLAGLVSSGGEAKALIQEG------EVKVNGEVETR---RGKKLRPGDVVEI 57 (65)
T ss_dssp S---HHHHHHHHTS-SSSSTTSHHHHHH------HHEETTB-------SS----SSEEEEE
T ss_pred CcEEHHHHHhHcCCcccHHHHHHHHHcC------ceEECCEEccc---cCCcCCCCCEEEE
Confidence 3488999998765333222222222222 37889985422 2358999999987
No 65
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=81.91 E-value=5.3 Score=34.65 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCc--------cceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERP--------ELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~--------~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
++..+..+...|..|.|+|+.+.++.|+.+. -+|++-=.-..||+++| |..+| .|+.||.|.++
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~v-----Ri~dG---~ik~gdki~~m 231 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLV-----RIFDG---TLKKGDKIRMM 231 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEE-----EEeec---eecCCCEEEEE
Confidence 3456788888999999999999999986532 34443223445788776 56666 79999999988
Q ss_pred ec
Q psy9168 91 ST 92 (96)
Q Consensus 91 P~ 92 (96)
++
T Consensus 232 ~t 233 (603)
T COG0481 232 ST 233 (603)
T ss_pred ec
Confidence 76
No 66
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=81.85 E-value=5.4 Score=34.81 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=35.3
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+++|. |+|+-|+.-.+-...+. ..+-..|||+-+ .++|+|++||+|.|+-.
T Consensus 372 ~~lp~--gst~~DfAy~ih~~~g~-------------~~~~a~vng~~v----~l~~~l~~gd~vei~t~ 422 (683)
T TIGR00691 372 VELPS--GSTPVDFAYAVHTDVGN-------------KCTGAKVNGKIV----PLDKELENGDVVEIITG 422 (683)
T ss_pred EEcCC--CCCHHHHHHHHhHHhHh-------------ceeEEEECCEEC----CCCccCCCCCEEEEEeC
Confidence 36666 88888877655433211 124467899854 47899999999999854
No 67
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=81.68 E-value=3.5 Score=24.55 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=33.1
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+++++. ..||.+|-+.|.+... ..+.+|+.. |+. + . |-..| .++.+++|+.|.++.
T Consensus 13 ~i~v~~--~~tv~~lK~~i~~~~gi~~~~q~L~~~-g~~------l-~--d~~~L--~~~~i~~g~~l~v~~ 70 (71)
T cd01812 13 DLSISS--QATFGDLKKMLAPVTGVEPRDQKLIFK-GKE------R-D--DAETL--DMSGVKDGSKVMLLE 70 (71)
T ss_pred EEEECC--CCcHHHHHHHHHHhhCCChHHeEEeeC-Ccc------c-C--ccCcH--HHcCCCCCCEEEEec
Confidence 344544 8999999999988753 223344432 221 1 1 11223 245689999998763
No 68
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=81.42 E-value=6.1 Score=23.95 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=34.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcC----CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKL----TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~----~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
..+++.++.....||++|-+.+.+... ..+-+|+. +|+ +|-++. .| .++-+++||.|.++
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-~G~------~L~d~~---~L--~~~~i~~~~~i~~~ 72 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-SGK------ILKDDT---TL--EEYKIDEKDFVVVM 72 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-CCE------EccCCC---CH--HHcCCCCCCEEEEE
Confidence 334444444458999999999998763 12223322 222 222222 22 34678999988765
No 69
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=81.21 E-value=8.1 Score=24.52 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.1
Q ss_pred CCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEE
Q psy9168 10 NHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILV 64 (96)
Q Consensus 10 ~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~V 64 (96)
+|.|.=..-+.|-|.+| .|+.+|++.-++++......++.++|.--..|.+
T Consensus 9 ~~~~~~~~~~GKvi~lP----~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~ 59 (69)
T PF11834_consen 9 NHPPEKGRRAGKVIWLP----DSLEELLKIASEKFGFSATKVLNEDGAEIDDIDV 59 (69)
T ss_pred CCCCcccCcCCEEEEcC----ccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEE
Confidence 34433344456766774 5999999999999977666777776654444443
No 70
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.20 E-value=5.3 Score=31.10 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=42.1
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHc-CCCCccceecCCccccc----eEEEEcCcCccccCCc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNK-LTERPELFVQGDSVRPG----ILVLINEADWELYGEL 77 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~----V~VlVNg~Di~~L~Gl 77 (96)
|.|--+. .|||+.| +|+.+ .+.||-|+|..+..++ |.+..+.. .+.+ -.|.|||+... .=
T Consensus 14 ~R~~~~~--~~~~~~~---~v~~~--~~~tvLd~L~~i~~~~d~tl~~~~~-----C~~G~CgsC~v~ING~~~l---aC 78 (279)
T PRK12576 14 KRYDPEK--GSWWQEY---KVKVD--RFTQVTEALRRIKEEQDPTLSYRAS-----CHMAVCGSCGMKINGEPRL---AC 78 (279)
T ss_pred EecCCCC--CCeEEEE---EEecC--CCCHHHHHHHHhCCccCCCceecCC-----CCCCCCCCCEEEECCcEec---cc
Confidence 5553332 3888766 34444 4999999999998765 33322111 2233 35888998743 12
Q ss_pred ccccCC-----CCEEEEee
Q psy9168 78 TYELKE-----NDTIMFIS 91 (96)
Q Consensus 78 dT~L~d-----gD~V~iiP 91 (96)
.|.+.+ |++|+|=|
T Consensus 79 ~t~v~~~~~~~~~~~tieP 97 (279)
T PRK12576 79 KTLVLDVAKKYNSVITIEP 97 (279)
T ss_pred cCcHHHhhcCCCCcEEEEE
Confidence 345443 45555544
No 71
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=79.11 E-value=5.2 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.068 Sum_probs=21.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
.|.|-++. ..|++++|+.+.+++.
T Consensus 18 ~k~i~v~~--~tTa~evi~~~l~k~~ 41 (93)
T PF00788_consen 18 YKTIKVSS--STTAREVIEMALEKFG 41 (93)
T ss_dssp EEEEEEET--TSBHHHHHHHHHHHTT
T ss_pred EEEEEECC--CCCHHHHHHHHHHHhC
Confidence 68888888 8999999999999984
No 72
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=78.95 E-value=8.8 Score=31.67 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=43.5
Q ss_pred cCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc---CCcccccC
Q psy9168 6 PLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY---GELTYELK 82 (96)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L---~GldT~L~ 82 (96)
.-.+.--|+|+ . -+-+.. |+||+|+-+.|-+.+-...+ .-.|=|.++.|- =|++.+|+
T Consensus 295 tK~~g~~pd~~---~-PlIlr~--GsTV~Dvc~~IH~~l~~~Fr-------------yA~VWGkSvk~~~QrVG~dHvLe 355 (365)
T COG1163 295 TKPPGEEPDFD---E-PLILRR--GSTVGDVCRKIHRDLVENFR-------------YARVWGKSVKHPGQRVGLDHVLE 355 (365)
T ss_pred ecCCCCCCCCC---C-CeEEeC--CCcHHHHHHHHHHHHHHhcc-------------eEEEeccCCCCCccccCcCcCcc
Confidence 33455566663 2 345555 89999999998776533322 233344444443 38899999
Q ss_pred CCCEEEEee
Q psy9168 83 ENDTIMFIS 91 (96)
Q Consensus 83 dgD~V~iiP 91 (96)
|+|.|.|+.
T Consensus 356 D~DIV~I~~ 364 (365)
T COG1163 356 DEDIVEIHA 364 (365)
T ss_pred CCCeEEEee
Confidence 999999973
No 73
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=78.11 E-value=9.3 Score=24.03 Aligned_cols=40 Identities=23% Similarity=0.058 Sum_probs=28.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLIN 67 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVN 67 (96)
-+.|+|.++. ..|..|+|+.+.+++.- . +. .+.+.++.+-
T Consensus 15 ~~~kti~v~~--~tTa~~Vi~~~l~k~~l-~------~~-~~~y~L~e~~ 54 (90)
T smart00314 15 GTYKTLRVSS--RTTARDVIQQLLEKFHL-T------DD-PEEYVLVEVL 54 (90)
T ss_pred CcEEEEEECC--CCCHHHHHHHHHHHhCC-C------CC-cccEEEEEEe
Confidence 4568888887 99999999999998841 1 11 4456666664
No 74
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=77.66 E-value=5.3 Score=24.47 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..++++. ..||+++-+.+.+... ....+|.- +|+ +|-|+ +.| .++-+++++.|.+...+-||
T Consensus 11 ~~l~v~~--~~tV~~lK~~i~~~~gip~~~q~Li~-~Gk------~L~D~---~tL--~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 11 HTLEVTG--QETVSDIKAHVAGLEGIDVEDQVLLL-AGV------PLEDD---ATL--GQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred EEEEECC--cCcHHHHHHHHHhhhCCCHHHEEEEE-CCe------ECCCC---CCH--HHcCCCCCCEEEEEEecCCC
Confidence 3445544 8999999999988753 22223322 232 23333 233 24789999999999998887
No 75
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=77.53 E-value=5.9 Score=30.21 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=44.0
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccC
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELK 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~ 82 (96)
|.|--++.-.|||++| +|+... ...||-|+|.++.+.-+.+.-+- .-...+=..=-++|||+..-.= .|.++
T Consensus 10 ~R~~~~~~~~~~~~~y---~v~~~~-~~~tvld~L~~ik~~d~~l~fr~-sCr~giCGsCa~~iNG~~~LaC---~t~~~ 81 (235)
T PRK12575 10 YRYDPDDDAAPRMQRY---EIAPRA-EDRMLLDVLGRVKAQDETLSYRR-SCREGICGSDAMNINGRNGLAC---LTNMQ 81 (235)
T ss_pred EeeCCCCCCCceeEEE---EecCCC-CCCcHHHHHHHHHhcCCCeeeec-cCCCCCCCCCeeEECCeEcchh---hCcHh
Confidence 5664466668999877 333322 24799999999985333331111 1111222244588999965321 24444
Q ss_pred C-CCEEEEee
Q psy9168 83 E-NDTIMFIS 91 (96)
Q Consensus 83 d-gD~V~iiP 91 (96)
+ +++|.|=|
T Consensus 82 ~~~~~i~ieP 91 (235)
T PRK12575 82 ALPREIVLRP 91 (235)
T ss_pred HcCCCEEEeE
Confidence 2 24566555
No 76
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=76.30 E-value=12 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCC
Q psy9168 12 TPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLT 46 (96)
Q Consensus 12 ~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~ 46 (96)
||-|+|. +.|.+.+ ..|..|+|+.|-++|--
T Consensus 8 ~P~~gs~--~~v~VsS--~~tt~eVI~~LL~KFkv 38 (87)
T cd01784 8 TPAYGSV--TNVRINS--TMTTPQVLKLLLNKFKI 38 (87)
T ss_pred CCCCCce--eEEEEec--CCCHHHHHHHHHHhccc
Confidence 5666654 6789999 89999999999998853
No 77
>COG4723 Phage-related protein, tail component [Function unknown]
Probab=76.29 E-value=2.6 Score=32.02 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcC---ccccCCcccccCCCCEEEEeeccCCC
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEAD---WELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~D---i~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.|.+|.|+.|+.+.|+.+..+- +|. .-+.+-++| +..-.-+.-.+.+|++|.|+|-++|+
T Consensus 26 ~t~aEAi~AL~~q~pgfr~~m~--~~~----y~~~i~~~~~~~~~v~~~~~e~~~~g~~I~iVPrlaGa 88 (198)
T COG4723 26 NTAAEAIRALSLQMPGFRRQMN--EGW----YQIRIAGVDTAPENVTASLHESLGPGAVIHIVPRLAGA 88 (198)
T ss_pred CCHHHHHHHHHhcChhHHHHHh--cce----eeeEeeccccCcccccHhHhccCCCCcEEEecceeccC
Confidence 5789999999999998877664 232 222233332 22223344567899999999999984
No 78
>smart00363 S4 S4 RNA-binding domain.
Probab=75.92 E-value=2.9 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=19.1
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.|+|||+.+.. .++.|+.||.|.+.
T Consensus 27 ~i~vng~~~~~---~~~~l~~gd~i~~~ 51 (60)
T smart00363 27 RVKVNGKKVTK---PSYIVKPGDVISVR 51 (60)
T ss_pred CEEECCEEecC---CCeEeCCCCEEEEc
Confidence 37889997632 36789999999874
No 79
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=75.12 E-value=9.3 Score=22.89 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=36.9
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCccc----ccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTY----ELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT----~L~dgD~V~ii 90 (96)
.+.+.+......+++.|++..+++..-... ..+.++.+|+.++ ..+| -++|||.|.++
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~----------~~~~l~fdG~~L~---~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPE----------ESIRLIFDGKRLD---PNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT-----------TTEEEEETTEEE----TTSCHHHHT-STTEEEEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCcc----------ceEEEEECCEEcC---CCCCHHHCCCCCCCEEEEE
Confidence 345555555589999999999988742221 2455666776643 3344 49999998764
No 80
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.57 E-value=7.6 Score=26.62 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=30.8
Q ss_pred EecCCCCCCHHHHHHH--HHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 24 LFSSYLTGTIKGLIEW--LKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~--L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
.+...+|+||.|.+.. |.+.+++.. ...++ +-| =++.+ -++.+|+|||.|-|.=|+
T Consensus 20 ~v~v~egatV~dAi~~Sgll~~~~~id----l~~n~----~GI--~~k~~----kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 20 RVQLQEGATVEDAILASGLLELFPDID----LHENK----VGI--YSKPV----KLDDELHDGDRVEIYRPL 77 (99)
T ss_pred EEEeccCcCHHHHHHhcchhhccccCC----ccccc----eeE--Ecccc----CccccccCCCEEEEeccc
Confidence 4444559999999863 333333221 01111 112 12333 245689999999998654
No 81
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=73.12 E-value=3.7 Score=25.13 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=19.5
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+.+-..+|||+-... +=-+++|++||+|.+
T Consensus 38 ~~~W~~~vNG~~~~~-ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 38 GSYWMYYVNGESANV-GAGSYKLKDGDKITW 67 (68)
T ss_dssp TEEEEEEETTEE-SS--CCC-B--TTEEEEE
T ss_pred CceeEEEECCEEhhc-CcceeEeCCCCEEEe
Confidence 357789999997654 334689999999986
No 82
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=71.07 E-value=19 Score=21.21 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=35.2
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCc---CccccCCcccccCCCCEEEEe
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEA---DWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~---Di~~L~GldT~L~dgD~V~ii 90 (96)
+.+.+......||++|=+.+.+...-... ...++.||+ |-..|+ ++-+++|+.|.+.
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~-----------~~~L~~~G~~L~d~~tL~--~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPE-----------QQRLIYNGKELDDDKTLS--DYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGG-----------GEEEEETTEEESTTSBTG--GGTTSTTEEEEEE
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccc-----------cceeeeeeecccCcCcHH--HcCCCCCCEEEEE
Confidence 34555555589999999999987752211 122333443 333332 5689999988764
No 83
>PRK03955 hypothetical protein; Reviewed
Probab=70.83 E-value=30 Score=24.46 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=48.7
Q ss_pred ccCCCCCccCCCCceEEecCCCCCCHHHHHH-HHHHHcCCCCccceecCC-ccccceEEEEcCcCccccCCcc-cccCCC
Q psy9168 8 EKNHTPYFDSFPKPTVLFSSYLTGTIKGLIE-WLKLNKLTERPELFVQGD-SVRPGILVLINEADWELYGELT-YELKEN 84 (96)
Q Consensus 8 ~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~-~L~~~~~~~~~~lf~~~g-~lr~~V~VlVNg~Di~~L~Gld-T~L~dg 84 (96)
+++|-=|=.|++-|.+.++..-|+|++..+= .|..+.-.-+.-+|.+.+ -+..+.+|. .|-...+.+ +.|++|
T Consensus 39 d~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~~~~ils~GaIvA----gIP~V~~~~~~~l~~G 114 (131)
T PRK03955 39 DKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLEAEPIVATGAIIS----GIPLVDKVDISKLKDG 114 (131)
T ss_pred ecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEecCCceeEeeeeec----CCceEccccceecCCC
Confidence 3456556789999999999988888876544 444433222445555433 244444443 333333333 369999
Q ss_pred CEEEEee
Q psy9168 85 DTIMFIS 91 (96)
Q Consensus 85 D~V~iiP 91 (96)
|.|.+-+
T Consensus 115 ~~V~Vdg 121 (131)
T PRK03955 115 DRVVVDG 121 (131)
T ss_pred CEEEEeC
Confidence 9998753
No 84
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=69.41 E-value=3.5 Score=23.15 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=17.0
Q ss_pred EEEcCcCccccCCcccccCCCCEE
Q psy9168 64 VLINEADWELYGELTYELKENDTI 87 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V 87 (96)
|.|||+-+.- .+++++.||+|
T Consensus 28 V~VNg~~v~~---~~~~v~~~d~I 48 (48)
T PF01479_consen 28 VKVNGKVVKD---PSYIVKPGDVI 48 (48)
T ss_dssp EEETTEEESS---TTSBESTTEEE
T ss_pred EEECCEEEcC---CCCCCCCcCCC
Confidence 7889998753 46899999987
No 85
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=69.21 E-value=15 Score=22.97 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=35.0
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHc--CCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNK--LTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~--~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+.+.++....+||++|-+.+.+.. +..+-+|.- .|+ +|-++.-+ .++-+++|+.|.+.
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~-~Gk------~L~D~~tL-----~~ygi~~~stv~l~ 71 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK-WYT------IFKDHISL-----GDYEIHDGMNLELY 71 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe-CCc------CCCCCCCH-----HHcCCCCCCEEEEE
Confidence 3555555555899999999998775 333334432 232 12222222 24678999998764
No 86
>PRK09602 translation-associated GTPase; Reviewed
Probab=68.02 E-value=12 Score=30.41 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=36.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+.+.++. |+|+.|+-..+-..+.... +.... .+..+ ..|.+++|+|||+|.|+..
T Consensus 341 ~~~~l~~--g~t~~d~A~~IH~d~~~~f--i~A~~------------~~~~~-~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 341 DAFLLPK--GSTARDLAYKIHTDIGEGF--LYAID------------ARTKR-RIGEDYELKDGDVIKIVST 395 (396)
T ss_pred eeEEECC--CCCHHHHHHHHHHHHHhhc--eehhc------------ccCCc-ccCCCcEecCCCEEEEEeC
Confidence 3567777 9999999888766553221 11111 11223 5689999999999999853
No 87
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=67.78 E-value=14 Score=32.99 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=33.2
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+.+|. |+|+-|.--.+-...+. ..+-..|||+-+. ++|+|++||.|.|+-.
T Consensus 416 ~~Lp~--gaT~lDfAy~iHt~iG~-------------~~~gAkvng~~v~----l~~~L~~GD~VeIits 466 (743)
T PRK10872 416 VDLPA--GSTPLDFAYHIHSDVGH-------------RCIGAKIGGRIVP----FTYQLQMGDQIEIITQ 466 (743)
T ss_pred EEcCC--CCcHHHHHHHHhHHHHh-------------hceEEEECCEECC----CCcCCCCCCEEEEEeC
Confidence 35555 77777765544432211 1233578997653 6899999999999854
No 88
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=67.41 E-value=6.2 Score=30.27 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=44.7
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCC-----CccceecCC--ccccceEEEEcCcCccccC
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTE-----RPELFVQGD--SVRPGILVLINEADWELYG 75 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~-----~~~lf~~~g--~lr~~V~VlVNg~Di~~L~ 75 (96)
|.|.- +...|||++| +++..++.||-|+|.+|.++.-.. ..--|...- .+=..=-+.|||+..-.=
T Consensus 11 ~R~~~-~~~~~~~q~y-----~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~LAC- 83 (249)
T PRK08640 11 KRQDG-PDSKPYWEEF-----EIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPRQAC- 83 (249)
T ss_pred EeeCC-CCCCceeEEE-----EecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccchhh-
Confidence 55543 4567999877 344445899999999998762000 011121111 111234588999985221
Q ss_pred CcccccCC-CCEEEEee
Q psy9168 76 ELTYELKE-NDTIMFIS 91 (96)
Q Consensus 76 GldT~L~d-gD~V~iiP 91 (96)
.|.+++ +++|.|=|
T Consensus 84 --~t~v~~~~~~i~ieP 98 (249)
T PRK08640 84 --TALIDQLEQPIRLEP 98 (249)
T ss_pred --hChHHHcCCcEEEEE
Confidence 234432 46777765
No 89
>KOG0126|consensus
Probab=64.08 E-value=5.5 Score=30.54 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=18.9
Q ss_pred ccccCCcccccCCCCEEEEeec
Q psy9168 71 WELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 71 i~~L~GldT~L~dgD~V~iiP~ 92 (96)
|-+++|+.+.|.+||.|++|+-
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSq 58 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQ 58 (219)
T ss_pred EEEECCCcccccCCcEEEEeec
Confidence 4467899999999999999985
No 90
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=63.45 E-value=17 Score=28.03 Aligned_cols=54 Identities=11% Similarity=-0.050 Sum_probs=30.1
Q ss_pred CCccCCCCceEEecCCCCCCHHHHHHHHHHHcCC-CCccceecCCccccceEEEEcCcCcc
Q psy9168 13 PYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLT-ERPELFVQGDSVRPGILVLINEADWE 72 (96)
Q Consensus 13 ~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~-~~~~lf~~~g~lr~~V~VlVNg~Di~ 72 (96)
|||++| +|+. ..+.||-++|.+|..+.-+ +.-+. .-...+=..=.++|||+...
T Consensus 17 ~~~q~y---~v~~--~~~~tvLd~L~~i~~~~d~~l~~r~-~C~~g~CGsCa~~InG~p~l 71 (251)
T PRK12386 17 GELQDY---TVEV--NEGEVVLDVIHRLQATQAPDLAVRW-NCKAGKCGSCSAEINGRPRL 71 (251)
T ss_pred CceEEE---EEeC--CCCCCHHHHHHHhccccCCCCcccC-CCCCCcCCCCEEEECccEec
Confidence 466655 4444 4589999999997764221 11111 11111222345889999754
No 91
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.07 E-value=12 Score=30.62 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHc-----CCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNK-----LTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~-----~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+..+.+.+......||.+|-+.|.+.. +..+-+|.. .|+ ||-++.- | .++.|++||.|.++
T Consensus 7 tl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy-~Gk------iL~Dd~t---L--~dy~I~e~~~Ivvm 73 (378)
T TIGR00601 7 TLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY-SGK------ILSDDKT---V--REYKIKEKDFVVVM 73 (378)
T ss_pred eCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE-CCE------ECCCCCc---H--HHcCCCCCCEEEEE
Confidence 3444555555555899999999998874 323333332 232 3333332 2 24678888888776
No 92
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=62.56 E-value=13 Score=22.68 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
..+++.+......||++|-+.+++... ....+|+- +|+ +|-+++.+ .++-+++|+.|.++-
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~-~G~------~L~d~~~L-----~~~~i~~~~~l~l~~ 71 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF-KGK------ALADDKRL-----SDYSIGPNAKLNLVV 71 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCCCCH-----HHCCCCCCCEEEEEE
Confidence 344444444448999999999988753 22334442 232 23333332 256799999987753
No 93
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=62.40 E-value=18 Score=28.31 Aligned_cols=59 Identities=17% Similarity=-0.151 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHcCC---CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLT---ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~---~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.|.|..||=+...+..-+ ....+. ..| ..-.+.+-||..-.-..-+.+++|++||.|.|
T Consensus 34 pGvtt~Eld~~~~~~i~~~ga~pa~~g-y~g-~~~~~ciSvNe~v~HgiP~d~~vlk~GDiv~I 95 (255)
T COG0024 34 PGVTTLELDEIAEEFIREKGAYPAFLG-YKG-FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKI 95 (255)
T ss_pred CCCCHHHHHHHHHHHHHHcCceehhcc-CcC-CCcceEeehhheeeecCCCCCcccCCCCEEEE
Confidence 478888876655443322 111111 122 44568899999866555557799999999987
No 94
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=62.15 E-value=14 Score=23.82 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=36.7
Q ss_pred CCCceEEecC--CCCCCHHHHHHHHHHHcC-----CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 18 FPKPTVLFSS--YLTGTIKGLIEWLKLNKL-----TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 18 ~~~~~ve~~~--~~g~TV~dLL~~L~~~~~-----~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
||-++||+.. +...||.+|-+.+.++.+ ..+.+|.- .|+ +|-|++-+ .++-+++|+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy-~GK------iL~D~~TL-----~dygI~~gstlhLv 73 (75)
T cd01815 6 FPFPEVELGDVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIH-CGR------KLKDDQTL-----DFYGIQSGSTIHIL 73 (75)
T ss_pred ccCCCCCCCCcCCccCcHHHHHHHHHHhhccCCCChHHeEEEe-CCc------CCCCCCcH-----HHcCCCCCCEEEEE
Confidence 5556666543 335899999999999852 22223332 333 23344333 25678999988875
No 95
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=61.77 E-value=3.3 Score=27.46 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.0
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||+|.|
T Consensus 66 ~eGK~YivqDGDIi~f 81 (84)
T PF06071_consen 66 LEGKDYIVQDGDIIHF 81 (84)
T ss_dssp EEETT-B--TTEEEEE
T ss_pred ccCCceeEeCCCEEEE
Confidence 4688899999999976
No 96
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=61.15 E-value=13 Score=23.08 Aligned_cols=26 Identities=19% Similarity=-0.041 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
-..|+|.++. .+|.+++++.+.+++.
T Consensus 12 ~~~kti~V~~--~~t~~~Vi~~~l~k~~ 37 (87)
T cd01768 12 GTYKTLRVSK--DTTAQDVIQQLLKKFG 37 (87)
T ss_pred ccEEEEEECC--CCCHHHHHHHHHHHhC
Confidence 5668889988 9999999999999884
No 97
>PLN02856 fumarylacetoacetase
Probab=59.94 E-value=28 Score=29.15 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHcCCC-CccceecCCcc------c--cceEEEEcCcC-ccccCCc-ccccCCCCEEEEeecc
Q psy9168 31 GTIKGLIEWLKLNKLTE-RPELFVQGDSV------R--PGILVLINEAD-WELYGEL-TYELKENDTIMFISTL 93 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~-~~~lf~~~g~l------r--~~V~VlVNg~D-i~~L~Gl-dT~L~dgD~V~iiP~v 93 (96)
-|+.++|+.+..+.-.+ ..+|+.. |.+ . ..+-+..+|+. +++-+|. -+-|+|||+|.+--..
T Consensus 331 ws~~qlIah~~s~g~tL~pGDLi~T-GTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~ 403 (424)
T PLN02856 331 WTLAQQLAHHTVNGCNLRPGDLLGS-GTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWC 403 (424)
T ss_pred CCHHHHHHHHHhCCeecCCCCEEEe-CCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEE
Confidence 37889998765555455 4466642 332 2 23445567764 5554554 4669999999986543
No 98
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=59.37 E-value=23 Score=22.05 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=38.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHc--CCCCccceec--CCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNK--LTERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~--~~~~~~lf~~--~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.++.+++.....||++|=+.|.+.. |..+..|+.. .|+ ++-|+..++. ..+++|+.|.++-
T Consensus 9 g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk------~l~D~~~L~~-----~~i~~g~~i~lmG 73 (74)
T cd01813 9 GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGK------PAEDDVKISA-----LKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCC------cCCCCcCHHH-----cCCCCCCEEEEEe
Confidence 3444444545899999988888764 4445556531 233 3445555543 3688999998863
No 99
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=58.45 E-value=12 Score=20.95 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=17.8
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|+|||+-+.. .+++++.||.|.+.
T Consensus 28 V~vn~~~~~~---~~~~v~~~d~i~i~ 51 (70)
T cd00165 28 VLVNGKVVTK---PSYKVKPGDVIEVD 51 (70)
T ss_pred EEECCEEccC---CccCcCCCCEEEEc
Confidence 7789987632 35788899988774
No 100
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=58.40 E-value=17 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=22.3
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+-..|||+-+. ++|+|+.||.|.|+-.
T Consensus 422 ~gAkVNg~~vp----L~~~L~~Gd~VeIiT~ 448 (702)
T PRK11092 422 VGARVDRQPYP----LSQPLTSGQTVEIITA 448 (702)
T ss_pred EEEEECCEECC----CCccCCCCCEEEEEeC
Confidence 55788999875 4799999999999853
No 101
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=58.30 E-value=5.7 Score=26.35 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=13.9
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||++.|
T Consensus 66 ~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 66 QEGKDYVVQDGDIIFF 81 (83)
T ss_pred hhCCceEeeCCeEEEE
Confidence 5778999999999976
No 102
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=58.26 E-value=28 Score=29.43 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=38.6
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.++.+++. |+|+.|++..+...++ .+-+...|||+=+ .+++++..+++|.|+-
T Consensus 9 g~~~~~~~--gtt~~dia~~~~~~~~-------------~~~v~a~vng~l~----dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 9 GSVREFEA--GVTVADVAASISPGLA-------------KAAVAGKVNGELV----DLSTPIEEDASLEIIT 61 (638)
T ss_pred CCEEEeCC--CCCHHHHHHHhhhhch-------------hheEEEEECCEEe----eCCccccCCCceeeee
Confidence 44567776 8999999887766432 1247788898743 3678999999999875
No 103
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=57.59 E-value=2.4 Score=35.01 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=36.1
Q ss_pred ceeecCccCCCCCccCCCCceEEecCCC--CCCHHHHHHHHHHHcCCCCccceecCCccccce
Q psy9168 2 TWTFPLEKNHTPYFDSFPKPTVLFSSYL--TGTIKGLIEWLKLNKLTERPELFVQGDSVRPGI 62 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ve~~~~~--g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V 62 (96)
-||+|-+-+..|.=.+|-+++|-++... ...+..|-+.|++-.|+ +||+++|++.+.+
T Consensus 283 GWtgP~~vdG~~iEGt~raHQVPl~~~~~~~~~l~~Le~Wl~SY~Pe---eLFd~~G~~~~~i 342 (379)
T PF09364_consen 283 GWTGPKEVDGKPIEGTFRAHQVPLPDVRTDPEHLRLLEDWLRSYRPE---ELFDEDGRLVPEI 342 (379)
T ss_dssp TTTS-SEETTEE-TTSGGGSS-SSTTTTTSHHHHHHHHHHHHHT-GG---GTB-TTS-B-HHH
T ss_pred ccCCccccCCccccCcceeeeccccccCCCHHHHHHHHHHHHhCCHH---HhcCCCCCcCHHH
Confidence 3999988888888889999999777632 23555566666664443 8999999877654
No 104
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=7.8 Score=26.54 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=39.5
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCc-ccccCCCCEEE
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGEL-TYELKENDTIM 88 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~Gl-dT~L~dgD~V~ 88 (96)
..++.+.-.-..|.+-|+++.+++.+.... ...+|+||.+|+.-+-. |--.++||+|.
T Consensus 34 ~telfFkiKktT~f~klm~af~~rqGK~m~-----------slRfL~dG~rI~~dqTP~dldmEdnd~iE 92 (103)
T COG5227 34 GTELFFKIKKTTTFKKLMDAFSRRQGKNMS-----------SLRFLFDGKRIDLDQTPGDLDMEDNDEIE 92 (103)
T ss_pred CCEEEEEEeccchHHHHHHHHHHHhCcCcc-----------eeEEEEcceecCCCCChhhcCCccchHHH
Confidence 345555555578999999999998865443 34588999999864311 22367888764
No 105
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=56.83 E-value=20 Score=21.74 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=22.2
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccce
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELF 52 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf 52 (96)
++++++. .+|++||++.++++..=...+.|
T Consensus 9 ~~~~v~~--~~t~~~l~~~v~~~l~l~e~~~F 38 (80)
T PF09379_consen 9 KTFEVDP--KTTGQDLLEQVCDKLGLKEKEYF 38 (80)
T ss_dssp EEEEEET--TSBHHHHHHHHHHHHTTSSGGGE
T ss_pred EEEEEcC--CCcHHHHHHHHHHHcCCCCccEE
Confidence 4566666 89999999999999843344444
No 106
>PF14950 DUF4502: Domain of unknown function (DUF4502)
Probab=56.71 E-value=15 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=27.1
Q ss_pred cccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 58 VRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 58 lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
..+.+.||-|-+-+.+|.+ ..||+|.|+||=
T Consensus 325 ~g~~l~VLFTkETa~~L~~-----~P~DIIhIyPPW 355 (358)
T PF14950_consen 325 PGARLKVLFTKETAAHLRG-----RPGDIIHIYPPW 355 (358)
T ss_pred CCCcEEEEEeHHHHHHhCC-----CCCCEEEeCCCc
Confidence 5567999999999999964 799999999984
No 107
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=56.36 E-value=39 Score=19.78 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+++.+......||++|-+.+.++.+- .+-+|+. +|+ ++-+++ .| .++-+++|+.|.++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~------~L~d~~---~L--~~~~i~~~~~l~l~~ 71 (72)
T cd01809 11 QTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-SGR------VLKDDE---TL--SEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCE------ECCCcC---cH--HHCCCCCCCEEEEEe
Confidence 44444444489999999999887642 2223432 232 222222 22 246799999998764
No 108
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=55.69 E-value=40 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=21.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCc
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERP 49 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~ 49 (96)
.++.++.+..+||.+|.+.|.+++|....
T Consensus 15 ~tl~~~lp~~ttv~dL~~~l~~~~~~~~~ 43 (162)
T PF13019_consen 15 PTLSLSLPSTTTVSDLKDRLSERLPIPSS 43 (162)
T ss_pred CeEEeeCCCCCcHHHHHHHHHhhcCCCcc
Confidence 34455554589999999999999986533
No 109
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=55.19 E-value=30 Score=20.71 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=35.0
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
...+++.+......||+++-+.+++...-. .-+|. -.|+. |-+++- | .++-+++|+.|.+.
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G~~------L~d~~~---l--~~~~i~~~stl~l~ 68 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAGKE------LRNTTT---I--QECDLGQQSILHAV 68 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECCeE------CCCCCc---H--HHcCCCCCCEEEEE
Confidence 345556555556899999999998886322 22332 22321 222222 2 23677888887654
No 110
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=54.64 E-value=38 Score=28.97 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=38.8
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.++.+.+. |.|+.++++.+...++ ++-|...|||+=++ +++++.++..|.|+-
T Consensus 13 ~~~~~~~~--g~t~~~ia~~~~~~~~-------------~~iv~a~vn~~l~d----L~~~i~~d~~i~fv~ 65 (639)
T PRK12444 13 GSVKEFVK--GITLEEIAGSISSSLK-------------KKAVAGKVNDKLYD----LRRNLEEDAEVEIIT 65 (639)
T ss_pred CCEEEecC--CCCHHHHHHHhhhhcc-------------hheEEEEECCEEEE----cCcccCCCCeEEEec
Confidence 44556665 8999999988765432 23477889997554 578999999999874
No 111
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=53.83 E-value=30 Score=21.49 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=36.3
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccce-ecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELF-VQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf-~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
...+++.++....+||++|-+.+.+... ..+.+|- ..+|+ +|-+++ .| .++-+++|+.|.+.
T Consensus 10 ~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~------~L~D~~---tL--~~~gi~~gs~l~l~ 74 (80)
T cd01792 10 LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSRE------VLQDGV---PL--VSQGLGPGSTVLLV 74 (80)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCC------CCCCCC---CH--HHcCCCCCCEEEEE
Confidence 3446666655558999999999988763 2233441 12333 111222 23 25678899888765
No 112
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=53.06 E-value=46 Score=27.81 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHcCCC-CccceecCCcc--------ccceEEEEcCc-CccccCCcc-cccCCCCEEEEee
Q psy9168 32 TIKGLIEWLKLNKLTE-RPELFVQGDSV--------RPGILVLINEA-DWELYGELT-YELKENDTIMFIS 91 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~-~~~lf~~~g~l--------r~~V~VlVNg~-Di~~L~Gld-T~L~dgD~V~iiP 91 (96)
|+.++|+.++.+.-.+ ..+|+.. |.+ -..+-...+|+ .+.+-+|.. +-|+|||+|.+--
T Consensus 324 s~~qlIah~S~~g~tL~pGDLi~T-GTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~r~fL~dGD~V~~~~ 393 (415)
T TIGR01266 324 TMLQQLAHHSVNGCNLRPGDLLGS-GTISGSEPGSFGSMLELSWKGKKPIDVGQGETRTFLEDGDEVILRG 393 (415)
T ss_pred CHHHHHHHHhcCCcccCCCCEEEe-CCCCCCcccCCCcEEEEEeCCeeeeecCCCCCCCCCCCCCEEEEEE
Confidence 8899999999765566 4566643 322 23344556776 444444533 6699999999843
No 113
>PLN02560 enoyl-CoA reductase
Probab=52.25 E-value=38 Score=26.92 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=34.0
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCC---CCccceec--CCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLT---ERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~---~~~~lf~~--~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+|+++. .+||+||-+.+.++.+. .+.++..+ +|+-+ ++ ++.+++. | .++-+++|++|.+
T Consensus 17 ~lev~~--~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~-g~-~L~d~kt---L--~d~gv~~gstLy~ 80 (308)
T PLN02560 17 GLEVPD--SATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTR-PT-VLDDSKS---L--KDYGLGDGGTVVF 80 (308)
T ss_pred eEEcCC--CCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcC-cc-ccCCCCC---H--HhcCCCCCceEEE
Confidence 456655 89999999999987643 35555432 23222 11 2223332 2 2456788887654
No 114
>KOG1349|consensus
Probab=51.26 E-value=15 Score=29.49 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred CceEEecCCC-CCCHHHHHHHHHHHcCCC---CccceecCCccccceEEEEcCc
Q psy9168 20 KPTVLFSSYL-TGTIKGLIEWLKLNKLTE---RPELFVQGDSVRPGILVLINEA 69 (96)
Q Consensus 20 ~~~ve~~~~~-g~TV~dLL~~L~~~~~~~---~~~lf~~~g~lr~~V~VlVNg~ 69 (96)
.+.||++.-. ..||..+|..|..+++.. .++++.+++ ..|+|+.+|.
T Consensus 98 gd~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~---SNIlIYmtGH 148 (309)
T KOG1349|consen 98 GDDVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEG---SNILIYLTGH 148 (309)
T ss_pred CCcceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCC---CcEEEEEccC
Confidence 3455655422 269999999999999877 566766544 4899999997
No 115
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=51.11 E-value=14 Score=21.73 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=12.6
Q ss_pred cccCCcccccCCCCEEEEee
Q psy9168 72 ELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 72 ~~L~GldT~L~dgD~V~iiP 91 (96)
.+.-..+|.|+.||.|.++-
T Consensus 39 ~~~p~~~~~l~~gD~l~v~g 58 (71)
T PF02080_consen 39 IIIPDGDTVLQAGDILIVVG 58 (71)
T ss_dssp EES--TT-BE-TTEEEEEEE
T ss_pred EECCCCCCEECCCCEEEEEE
Confidence 34444599999999999874
No 116
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=50.43 E-value=17 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=21.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
++|||...++..|..++|++||+|.|=+
T Consensus 69 T~VN~sg~~l~~~~~~~L~~GD~I~iG~ 96 (396)
T TIGR03354 69 VFLNGSGSPLGRGNPVRLEQGDRLRLGD 96 (396)
T ss_pred eEECCCCCCCCCCCceEcCCCCEEEECC
Confidence 5779555555667778999999998743
No 117
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=50.32 E-value=54 Score=19.64 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=34.0
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCCc--cceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTERP--ELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~~~--~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+++++. ..||++|-+.+++..+-... ++. -+|+ +|-++. -| .++-+++|+.|.+..
T Consensus 13 ~l~v~~--~~TV~~lK~~I~~~~~i~~~~~~Li-~~Gk------~L~d~~---tL--~~~~i~~~stl~l~~ 70 (71)
T cd01808 13 EIEIAE--DASVKDFKEAVSKKFKANQEQLVLI-FAGK------ILKDTD---TL--TQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEECC--CChHHHHHHHHHHHhCCCHHHEEEE-ECCe------EcCCCC---cH--HHcCCCCCCEEEEEE
Confidence 466665 79999999999988742211 222 1232 222222 22 356789999988764
No 118
>KOG0462|consensus
Probab=49.57 E-value=37 Score=30.01 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=47.4
Q ss_pred CccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCc--------cceecCCccccceEEEEcCcCccccCCcccccCCCC
Q psy9168 14 YFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERP--------ELFVQGDSVRPGILVLINEADWELYGELTYELKEND 85 (96)
Q Consensus 14 ~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~--------~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD 85 (96)
-|+--+.+-+..+...|..|.++|+++.++.|+... -+|+.-=.-..|++.++ +..+| .|+.||
T Consensus 204 lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~v-----rv~~G---~vrkGd 275 (650)
T KOG0462|consen 204 LFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALV-----RVVDG---VVRKGD 275 (650)
T ss_pred HhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEE-----EEeee---eeecCC
Confidence 366677888899999999999999999999996532 22332222334666554 34444 677777
Q ss_pred EEEEe
Q psy9168 86 TIMFI 90 (96)
Q Consensus 86 ~V~ii 90 (96)
.|...
T Consensus 276 kV~~~ 280 (650)
T KOG0462|consen 276 KVQSA 280 (650)
T ss_pred EEEEe
Confidence 77654
No 119
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=48.69 E-value=19 Score=22.04 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=20.1
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
-++||++.+.. +..++|++||.|.|-+
T Consensus 67 g~~vn~~~~~~--~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 67 GTFVNGQRVSP--GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CeEECCEECCC--CCcEECCCCCEEEECC
Confidence 36678887654 3468899999998863
No 120
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=47.66 E-value=22 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=21.9
Q ss_pred cccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 58 VRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 58 lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.++.=.|.++|+.|+...-.+ ++.||.|.++-
T Consensus 101 ~~~~G~V~~~G~~w~A~s~~~--i~~G~~V~Vv~ 132 (144)
T PF01957_consen 101 LNGSGRVKVDGERWRARSEDE--IPKGDRVRVVG 132 (144)
T ss_dssp SSS-EEEEETTEEEEEEESST--B-TT-EEEEEE
T ss_pred cCCcEEEEECCeEEEEEeCCC--CCCCCEEEEEE
Confidence 345556889999999764433 99999998864
No 121
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=46.23 E-value=22 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|-|||.-. ...+.++.||+|.|-
T Consensus 36 V~vNG~~a----KpS~~VK~GD~l~i~ 58 (100)
T COG1188 36 VKVNGQRA----KPSKEVKVGDILTIR 58 (100)
T ss_pred EEECCEEc----ccccccCCCCEEEEE
Confidence 77899987 456899999999874
No 122
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=45.91 E-value=34 Score=22.70 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=22.7
Q ss_pred ccCCCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 15 FDSFPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 15 ~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
+..=.+|.|+++. ..|++|+.+.|..+.
T Consensus 9 ~~Dg~sK~l~V~~--~~Ta~dV~~~L~~K~ 36 (85)
T cd01787 9 SEDGASKSLEVDE--RMTARDVCQLLVDKN 36 (85)
T ss_pred ecCCCeeEEEEcC--CCcHHHHHHHHHHHh
Confidence 3344678888888 999999999998766
No 123
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=45.49 E-value=20 Score=22.41 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.8
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
++.+.|||+.+++| +--|..+++++.
T Consensus 2 ~~~~~Ing~~i~~l------vDTGA~~svis~ 27 (91)
T cd05484 2 TVTLLVNGKPLKFQ------LDTGSAITVISE 27 (91)
T ss_pred EEEEEECCEEEEEE------EcCCcceEEeCH
Confidence 46789999998875 445667776653
No 124
>PF01802 Herpes_V23: Herpesvirus VP23 like capsid protein; InterPro: IPR002690 This family consist of various capsid proteins from members of the Herpesviridae. The capsid protein VP23 in Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) forms a triplex together with VP19C these fit between and link together adjacent capsomers as formed by VP5 and VP26 []. VP3 along with the scaffolding proteins helps to form normal capsids by defining the curvature of the shell and size of the particle [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=45.48 E-value=16 Score=29.17 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccC-CcccccCCCCEEEEeeccCCC
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYG-ELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~-GldT~L~dgD~V~iiP~vaGG 96 (96)
.--.++.+++++++..-.++ +.+++. ...+-.|+-..+.+ |. -.+..||.|+++||+-|+
T Consensus 54 Dy~~l~~~lr~~t~aIl~~V--~p~~l~--l~~l~~g~~y~ikNTgP-f~w~ngd~l~liPPvf~~ 114 (296)
T PF01802_consen 54 DYLSLLSALRRRTLAILRRV--EPNQLI--LTVLDHGQGYQIKNTGP-FDWCNGDQLCLIPPVFGR 114 (296)
T ss_pred cHHHHHHHHHhhhHHHHhhh--cCCeEE--EEecCCCCceEEeecCC-eeccCCCEEEEeCCCCCC
Confidence 34467788888887654444 233321 11222333222221 33 578999999999999885
No 125
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=45.29 E-value=10 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=21.2
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
-.|+.||+.+..-+-..-.+..||.|+||
T Consensus 11 a~Vly~g~k~~i~d~~~~~v~Hge~Vsff 39 (85)
T PF09014_consen 11 ARVLYNGEKVWIQDLFKNGVLHGEIVSFF 39 (85)
T ss_dssp -EEEETTEEEEHHHHTTT-BETT-EEEEE
T ss_pred EEEEECCEEechhhcccCceeeCCEEEEE
Confidence 34788999887766666789999999997
No 126
>PTZ00258 GTP-binding protein; Provisional
Probab=44.56 E-value=13 Score=30.49 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.1
Q ss_pred cCCcccccCCCCEEEEe
Q psy9168 74 YGELTYELKENDTIMFI 90 (96)
Q Consensus 74 L~GldT~L~dgD~V~ii 90 (96)
+.|.|+.|+|||+|.|-
T Consensus 369 ~eGkdYiv~DGDIi~f~ 385 (390)
T PTZ00258 369 QEGKDYVVQDGDIIFFK 385 (390)
T ss_pred eeCCceEecCCCEEEEE
Confidence 56899999999999984
No 127
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=44.05 E-value=64 Score=21.86 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
..|.|++++ ..|..++|+.|-+++-
T Consensus 17 s~k~v~IsS--~tTt~eVI~~LL~KF~ 41 (96)
T cd01778 17 TAKHLHISS--KTTVREVIEALLKKFL 41 (96)
T ss_pred ceeEEEEec--CCcHHHHHHHHHHhhe
Confidence 357889999 8999999999999884
No 128
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=43.83 E-value=14 Score=30.16 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=14.6
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||.|.|
T Consensus 345 leGkdY~v~DGDIi~f 360 (364)
T PRK09601 345 LEGKDYIVQDGDVMHF 360 (364)
T ss_pred ccCCceEecCCCEEEE
Confidence 6789999999999987
No 129
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=43.80 E-value=22 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.|.|||+-+. -..+.|+.||+|++-.
T Consensus 116 ~V~VNgk~v~---~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 116 HILVNGKKVD---IPSYQVRPGDIISIKE 141 (200)
T ss_pred CEEECCEEeC---CCCCCCCCCCEEEEee
Confidence 3788998664 3467999999998753
No 130
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=43.53 E-value=22 Score=26.74 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHcCCC-CccceecC-C---ccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 30 TGTIKGLIEWLKLNKLTE-RPELFVQG-D---SVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~-~~~lf~~~-g---~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|.|-..||+.|..+.... .+..|... . .+...=.|.|||+-+.. ..+.|+.||+|.+-
T Consensus 77 g~tg~~ll~~LE~RLD~~L~r~g~~~SR~~ArqlI~~G~V~VNGk~v~~---ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDI---PSYRCKPKDIITVK 139 (201)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCcEEECCEEecC---ccccCCCCCEEEEc
Confidence 566677777776655322 11112111 0 11123347889997753 46899999999874
No 131
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=43.26 E-value=1.2e+02 Score=25.35 Aligned_cols=70 Identities=9% Similarity=-0.061 Sum_probs=50.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcc-cccCCCCEEEEeec
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELT-YELKENDTIMFIST 92 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~Gld-T~L~dgD~V~iiP~ 92 (96)
|++++.+--+....|.|++..|-+...+ ++. +.+.-.+..+.-.+|.-++.-.-++ ..+.|||++.+-|.
T Consensus 10 ~~~~~DlaLPa~~PvaellP~ll~~~~~---~~~-~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 10 GRRAVDVALPADVPVAELIPDLVDLLDD---RGA-AELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred CCeeeeeecCCCCcHHHHHHHHHHHhCc---ccc-cCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 4566766666689999999999986643 222 3344556778888888777654444 56999999999884
No 132
>PRK08671 methionine aminopeptidase; Provisional
Probab=42.62 E-value=70 Score=24.61 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc---CCcccccCCCCEEEEe
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY---GELTYELKENDTIMFI 90 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L---~GldT~L~dgD~V~ii 90 (96)
.|.|..|+-+.+.+..-... ..+.-..+|.+|..- .|- .+.+..|++||.|.|=
T Consensus 25 pG~se~ei~~~~~~~i~~~g-------~~~afp~~vs~n~~~-~H~~p~~~d~~~l~~GDvV~iD 81 (291)
T PRK08671 25 PGAKLLDVAEFVENRIRELG-------AKPAFPCNISINEVA-AHYTPSPGDERVFPEGDVVKLD 81 (291)
T ss_pred CCCcHHHHHHHHHHHHHHcC-------CccCCCCEEeeCCCc-cCCCCCCCCCcccCCCCEEEEE
Confidence 47899998888866543221 122213566778763 332 2346789999998763
No 133
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=41.67 E-value=11 Score=23.66 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=19.3
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
||.+.|.+||+.++.| |--|..|+++|
T Consensus 5 rp~i~v~i~g~~i~~L------lDTGA~vsiI~ 31 (100)
T PF00077_consen 5 RPYITVKINGKKIKAL------LDTGADVSIIS 31 (100)
T ss_dssp SSEEEEEETTEEEEEE------EETTBSSEEES
T ss_pred CceEEEeECCEEEEEE------EecCCCcceec
Confidence 7889999999988765 33355555554
No 134
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=41.67 E-value=63 Score=25.03 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCc--cccCCcccccCCCCEEEEe
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADW--ELYGELTYELKENDTIMFI 90 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di--~~L~GldT~L~dgD~V~ii 90 (96)
.|.|..||-+.+....-.. +++..=..+|.+|..-. ....+.++.|++||.|.|=
T Consensus 28 ~G~se~el~~~~e~~~~~~-------g~~~aFp~~vs~n~~~~H~~p~~~d~~~l~~GDvV~iD 84 (295)
T TIGR00501 28 PGVKLLEVAEFVENRIREL-------GAEPAFPCNISINECAAHFTPKAGDKTVFKDGDVVKLD 84 (295)
T ss_pred CCCCHHHHHHHHHHHHHHc-------CCCCCCCcceecCCEeeCCCCCCCcCccCCCCCEEEEE
Confidence 4788888888776654322 11121123455676532 2233446789999998874
No 135
>PHA03259 Capsid triplex subunit 2; Provisional
Probab=41.57 E-value=20 Score=28.92 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCccc------cceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVR------PGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr------~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.--.++.+++++++..-.++ +.+++. .+..-+-|=- ==.+..||.|+++||+-|+
T Consensus 54 Dyl~l~~~lr~~tlaIl~~V--~p~~L~L~~~~~~~~y~IkNTg--------PF~w~nGD~L~liPPvf~~ 114 (302)
T PHA03259 54 DYARIRTLLRNMTLTILRRV--EGNQLLLGVPTHGHLYTIKNTG--------PVLWEKGDTLTLLPPLFTG 114 (302)
T ss_pred cHHHHHHHHHHHhHHHHhhh--cCCeEEEeecCCCceEEEEecc--------ceeecCCCEEEEeCCcCCC
Confidence 44567888888887654443 233322 1222122211 1258899999999999875
No 136
>KOG1654|consensus
Probab=41.42 E-value=53 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEAD 70 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~D 70 (96)
.|+-..+|+ ..||++++..++.+. .+..+ .-+.++||+.-
T Consensus 45 DK~KyLVP~--dltvgqfi~iIRkRi-qL~~~---------kA~flfVn~~~ 84 (116)
T KOG1654|consen 45 DKKKYLVPD--DLTVGQFIKIIRKRI-QLSPE---------KAFFLFVNNTS 84 (116)
T ss_pred ccceeeccc--cccHHHHHHHHHHHh-ccChh---------HeEEEEEcCcC
Confidence 455566777 799999999999987 23111 13457888874
No 137
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=41.03 E-value=28 Score=24.35 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=24.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLT 46 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~ 46 (96)
.+.+|-|.+.+ .+|.+++|+.|.++|-.
T Consensus 34 k~atK~VrVsS--~~tt~eVI~~LLeKFk~ 61 (112)
T cd01782 34 KVATKCIRVSS--TATTRDVIDTLSEKFRP 61 (112)
T ss_pred cEEEEEEEEec--CCCHHHHHHHHHHHhcc
Confidence 46678899999 89999999999999853
No 138
>PHA03258 Capsid triplex subunit 2; Provisional
Probab=41.03 E-value=20 Score=28.85 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCC--cccccCCCCEEEEeeccCCC
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGE--LTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~G--ldT~L~dgD~V~iiP~vaGG 96 (96)
.--.++.+++++++..-.++ +.+++.-..+- -|.-..+.+- .==.+..||.|+++||+-|+
T Consensus 58 Dyl~l~~~lr~~tlaIl~~V--~p~~lil~~l~--~~~~y~IkNTg~P~F~w~nGD~L~liPPvf~~ 120 (304)
T PHA03258 58 DYVAMYNYLSKCTLAILEEV--NPDSLVLTRID--PGQTYQIKNKYQPFFQWDSHTQLSVIPPVFGR 120 (304)
T ss_pred cHHHHHHHHHHHHHHHHhhh--cCCeEEEEecC--CCceEEEEecCCCceeccCCCEEEEeCCcCCC
Confidence 34567778888887654444 23332211111 1111111110 01248899999999999775
No 139
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=40.73 E-value=22 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=19.6
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.|+|||+-|.. ..+.++.||+|.|
T Consensus 120 HI~VnGk~V~i---PSy~V~~gdei~V 143 (205)
T COG0522 120 HILVNGKRVNI---PSYLVSPGDEISV 143 (205)
T ss_pred eEEECCEEecc---CcEEecCCCEEEe
Confidence 48899998765 3578999999987
No 140
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=40.73 E-value=26 Score=26.09 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.|+|||+-+. -..+.|+.||+|++-.
T Consensus 119 ~V~VNgk~v~---~ps~~v~~GD~I~v~~ 144 (203)
T PRK05327 119 HILVNGKKVN---IPSYRVKPGDVIEVRE 144 (203)
T ss_pred cEEECCEEEC---CCCcCCCCCCEEEECC
Confidence 4889998653 3467999999999864
No 141
>PF03831 PhnA: PhnA protein; InterPro: IPR013988 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the C-terminal domain of PhnA.; PDB: 2AKK_A 2AKL_A.
Probab=40.09 E-value=15 Score=22.81 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=9.1
Q ss_pred ccccCCCCEEEEee
Q psy9168 78 TYELKENDTIMFIS 91 (96)
Q Consensus 78 dT~L~dgD~V~iiP 91 (96)
-++|++||.|+++-
T Consensus 7 Gn~L~dGDsV~~iK 20 (56)
T PF03831_consen 7 GNELQDGDSVTLIK 20 (56)
T ss_dssp S-B--TTEEEEESS
T ss_pred CCCccCCCEEEEEe
Confidence 37899999999873
No 142
>PHA03257 Capsid triplex subunit 2; Provisional
Probab=39.84 E-value=22 Score=28.86 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCcccc-ceEEEEcCcCcccc-CCcccccCCCCEEEEeeccCCC
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVRP-GILVLINEADWELY-GELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr~-~V~VlVNg~Di~~L-~GldT~L~dgD~V~iiP~vaGG 96 (96)
.--.++.+++++++..-.++ +.+++.- -+-+-..++-..+. -|. =.+..||.|+++||+-|+
T Consensus 59 Dyl~l~~~lr~rtlAVl~rV--~p~~Lia~~L~~g~~~~~y~IkNTgP-F~w~nGD~LcllPPvF~~ 122 (316)
T PHA03257 59 DTLSLLAAYRRRFPAVITRV--LPGRMSAVALGVGPLPPGLFLQNTGP-FDLCNGDAVCLLPPIFGG 122 (316)
T ss_pred cHHHHHHHHHHHhHHHHhhh--cCCeEEEEeccCCCCCCceEEEecCC-eeecCCCEEEEeCCcCCC
Confidence 34567778888887654433 2333210 00000011111111 122 468899999999999875
No 143
>KOG1892|consensus
Probab=39.68 E-value=41 Score=31.96 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=33.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCc
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEA 69 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~ 69 (96)
.+-+|-|-+.+ .+|+.|+|+.|+++|-+..+.|=...=.| .-|-+||+
T Consensus 53 kvaTKCiRVsS--tATt~dVidtL~EKFrPDmrMLS~p~YsL---yEVH~nGE 100 (1629)
T KOG1892|consen 53 KVATKCIRVSS--TATTQDVIDTLAEKFRPDMRMLSSPKYSL---YEVHVNGE 100 (1629)
T ss_pred hhhhheeEecc--cccHHHHHHHHHHHhCcchhhhcCCCcee---eeeecCcc
Confidence 46788888888 89999999999999977655442221112 23566777
No 144
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=39.26 E-value=27 Score=23.08 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.4
Q ss_pred ccCCCCEEEEeeccCC
Q psy9168 80 ELKENDTIMFISTLHG 95 (96)
Q Consensus 80 ~L~dgD~V~iiP~vaG 95 (96)
.|+.||.|.++|.-.|
T Consensus 76 ~Lk~GD~V~ll~~~~g 91 (100)
T PF10844_consen 76 GLKVGDKVLLLRVQGG 91 (100)
T ss_pred CCcCCCEEEEEEecCC
Confidence 7999999999995444
No 145
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=38.93 E-value=89 Score=18.89 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=16.8
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
.++++. ..||++|-+.+.+..+
T Consensus 13 ~l~v~~--~~TV~~lK~~I~~~~g 34 (71)
T cd01796 13 SLDVDP--DLELENFKALCEAESG 34 (71)
T ss_pred EEEECC--cCCHHHHHHHHHHHhC
Confidence 345544 8999999999988763
No 146
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=38.90 E-value=69 Score=26.09 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceec----CCccccceEEEEcCcCccccC--Cc-ccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQ----GDSVRPGILVLINEADWELYG--EL-TYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~----~g~lr~~V~VlVNg~Di~~L~--Gl-dT~L~dgD~V~i 89 (96)
.|+|..||-+...+..-......|.. ...+.-..+|.+|..-.-+.- +. ++.|++||.|.|
T Consensus 42 pG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~~d~~~~Lk~GDvVkI 109 (389)
T TIGR00495 42 PGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKI 109 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCCCCCCcCcCCCCEEEE
Confidence 37888887764333222111112211 011333366778866433222 32 488999999987
No 147
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=37.76 E-value=55 Score=20.04 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=32.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHc--CCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNK--LTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~--~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
+++.++.....||+++=+.+.+.. |....+|+- .|+ +|=+++-+. ++-+++|.+|.++
T Consensus 9 ~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~-~G~------~L~D~~~l~-----~~~i~~~~tv~~~ 68 (70)
T cd01794 9 KDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF-SGK------LLTDKTRLQ-----ETKIQKDYVVQVI 68 (70)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE-CCe------ECCCCCCHH-----HcCCCCCCEEEEE
Confidence 444444444899999999988774 333334442 233 122333221 3567777777664
No 148
>KOG0785|consensus
Probab=37.68 E-value=45 Score=27.49 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=52.3
Q ss_pred CCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCC--------ccccceEEEEcCcCccccCCccccc
Q psy9168 10 NHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGD--------SVRPGILVLINEADWELYGELTYEL 81 (96)
Q Consensus 10 ~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g--------~lr~~V~VlVNg~Di~~L~GldT~L 81 (96)
+-+|-|++|.++ -++. +.++.|..+..+++.-+-..-| .||.....+-|=|...+++|.+|+-
T Consensus 71 dv~~~~~~~~~~--~ip~-------~~~esl~~nkvgLkGp~~tPi~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y 141 (365)
T KOG0785|consen 71 DVTPIKGPFGGK--AIPD-------EAVESLRKNKVGLKGPVATPIGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPY 141 (365)
T ss_pred eccccccCCCCc--cCCH-------HHHHHHHhhcccccCcccCccccccccHHHHHHHHhchhccceecccccCCcCCC
Confidence 346677777555 3333 5677787777666665544333 3778888899999999999999999
Q ss_pred CCCCEEEE
Q psy9168 82 KENDTIMF 89 (96)
Q Consensus 82 ~dgD~V~i 89 (96)
+|=|.|.|
T Consensus 142 ~~vD~V~I 149 (365)
T KOG0785|consen 142 DDVDLVII 149 (365)
T ss_pred CCceEEEE
Confidence 99999886
No 149
>smart00455 RBD Raf-like Ras-binding domain.
Probab=37.40 E-value=59 Score=20.18 Aligned_cols=24 Identities=4% Similarity=-0.071 Sum_probs=19.1
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
..-+....|.|++|+|+.+.+++.
T Consensus 11 ~~~V~vrpg~tl~e~L~~~~~kr~ 34 (70)
T smart00455 11 RTVVKVRPGKTVRDALAKALKKRG 34 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcC
Confidence 344555569999999999999984
No 150
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=37.15 E-value=1.1e+02 Score=19.32 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=35.2
Q ss_pred ecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 25 FSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 25 ~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
++. ..||.+|=+.|....+-. .-+|..-+++ ...+..+-|+. ..|+ .+.++||.+|.++
T Consensus 19 ~~~--~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~-~~~~~~l~~d~--~~L~--~y~~~dg~~IhVv 79 (84)
T cd01789 19 YSR--GLTIAELKKKLELVVGTPASSMRLQLFDGD-DKLVSKLDDDD--ALLG--SYPVDDGCRIHVI 79 (84)
T ss_pred cCC--CCcHHHHHHHHHHHHCCCccceEEEEEcCC-CCeEeecCCCc--cEee--eccCCCCCEEEEE
Confidence 555 899999999998887533 2233112222 22233333333 3453 4689999999875
No 151
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=36.80 E-value=81 Score=17.81 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=33.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc-CCcccccCCCCEEEEe
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY-GELTYELKENDTIMFI 90 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L-~GldT~L~dgD~V~ii 90 (96)
.++..+......||++|-+.+.++.+-...+ +.++.||+...-. .=.+..+++|+.|.++
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~-----------~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQ-----------QRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHH-----------EEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 3444444444899999999999877422111 1223344322110 0123567899988775
No 152
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=36.44 E-value=31 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.067 Sum_probs=22.5
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+..--.+|||+.+.. .-.+++||.|.|-..
T Consensus 128 ~S~nGt~vn~~~v~~----~~~l~~gd~i~i~~~ 157 (191)
T COG1716 128 GSTNGTYVNGEKVRQ----RVLLQDGDVIRLGGT 157 (191)
T ss_pred CCCcceEECCeEccC----cEEcCCCCEEEECcc
Confidence 344468889998875 568999999988543
No 153
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=35.62 E-value=95 Score=19.97 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=31.4
Q ss_pred cCCCCCccCCCCceEEecCCCCCCHHHHHHHHHH--HcCC--CCccceecCC
Q psy9168 9 KNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKL--NKLT--ERPELFVQGD 56 (96)
Q Consensus 9 ~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~--~~~~--~~~~lf~~~g 56 (96)
+|..||| +...+.++...-.|...||+.|.+ ...- .-+.++..+|
T Consensus 12 rNGD~~~---~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G 60 (89)
T smart00537 12 RNGDRFF---KGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDG 60 (89)
T ss_pred eCCCCCC---CCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCC
Confidence 6777776 556677877666899999999999 4322 2456666555
No 154
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=35.32 E-value=34 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=23.2
Q ss_pred CccccCCcccccCCCCEEEEeeccCCC
Q psy9168 70 DWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 70 Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+-+.|.|.+..++.|++|+|+-|-+.|
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSG 40 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSG 40 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCC
Confidence 345689999999999999999988776
No 155
>PHA02101 hypothetical protein
Probab=35.27 E-value=66 Score=21.77 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=26.6
Q ss_pred ecCCCCCCHHHHHHHHHHHcCCCC-----ccceecCCccccceEE
Q psy9168 25 FSSYLTGTIKGLIEWLKLNKLTER-----PELFVQGDSVRPGILV 64 (96)
Q Consensus 25 ~~~~~g~TV~dLL~~L~~~~~~~~-----~~lf~~~g~lr~~V~V 64 (96)
-...+|..|+++|+.+..-+++.. .+.+.++|.+..+|-+
T Consensus 19 gkey~gt~vg~~l~~i~~~~gpgd~y~veyr~~~~~g~v~t~vg~ 63 (101)
T PHA02101 19 GKEYEGTSVGQMLKLIHVLHGPGDSYDVEYREMVENGHVKTRVGL 63 (101)
T ss_pred CcccCCccHHHHHHHHHHHcCCCchheeehhheecCCceEeeeec
Confidence 344568999999999988776541 2344567766555543
No 156
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=34.73 E-value=39 Score=23.53 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.3
Q ss_pred cCCcccccCCCCEEEEee
Q psy9168 74 YGELTYELKENDTIMFIS 91 (96)
Q Consensus 74 L~GldT~L~dgD~V~iiP 91 (96)
.+---+.|++||.|+++=
T Consensus 44 kDsnG~~L~dGDsV~liK 61 (109)
T TIGR00686 44 KDCNGNLLANGDSVILIK 61 (109)
T ss_pred EcCCCCCccCCCEEEEEe
Confidence 344457899999999873
No 157
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=34.67 E-value=35 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.|.|||+.+. .++.|+.||+|.+.+
T Consensus 46 ~V~VNg~~v~----~~~~v~~GD~I~i~~ 70 (317)
T PRK11025 46 EVRVNKKRIK----PEYKLEAGDEVRIPP 70 (317)
T ss_pred CEEECCEEcC----cccccCCCCEEEeCC
Confidence 4678999763 478999999999853
No 158
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=34.56 E-value=40 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.6
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
-|.|||+-+. .++.|+.||+|.+-.+.
T Consensus 38 ~v~vNg~~v~----~~~~l~~gd~i~~~~~~ 64 (289)
T COG0564 38 RVRVNGKKVK----PSYKLKPGDVVRIPLPE 64 (289)
T ss_pred CEEECCEEcc----CCeeeCCCCEEEEeccc
Confidence 5889999886 46899999999987754
No 159
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=33.62 E-value=79 Score=25.93 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+-..||++|...+.+.+..+.+.+|+.-++..|.|.|.+... .| =.+||-+.++||
T Consensus 303 n~~all~~~~~~~~gI~G~V~D~~g~pi~~A~V~v~g~~~~~----~T-~~~G~y~r~l~p 358 (392)
T cd03864 303 NREALISYIEQVHQGIKGMVTDENNNGIANAVISVSGISHDV----TS-GTLGDYFRLLLP 358 (392)
T ss_pred HHHHHHHHHHHhcCeEEEEEECCCCCccCCeEEEEECCccce----EE-CCCCcEEecCCC
Confidence 556899999999988888898888888899999998886422 22 245666555443
No 160
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=33.35 E-value=1.1e+02 Score=25.47 Aligned_cols=57 Identities=5% Similarity=0.113 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
.+-..||.+|...+.+.+..+.+..|..-+.-.|.|.|.+-.. |.-++||-=.+++|
T Consensus 315 ~N~~all~~~~~vh~GikG~V~d~~g~~i~~a~i~v~g~~~~v-----~t~~~GdywRll~p 371 (405)
T cd03869 315 NNKESLLVFMEQVHRGIKGVVRDKTGKGIPNAIISVEGINHDI-----RTASDGDYWRLLNP 371 (405)
T ss_pred HHHHHHHHHHHHHhcCceEEEECCCCCcCCCcEEEEecCccce-----eeCCCCceEEecCC
Confidence 3567889999999999999999888887777888998865322 23577887777655
No 161
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=32.89 E-value=72 Score=23.51 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=28.9
Q ss_pred ceeecCccCCCC-----------------CccCCCCceEEecCCCCC---CHHHHHHHHHHH
Q psy9168 2 TWTFPLEKNHTP-----------------YFDSFPKPTVLFSSYLTG---TIKGLIEWLKLN 43 (96)
Q Consensus 2 ~~~~~~~~~~~~-----------------~~~~~~~~~ve~~~~~g~---TV~dLL~~L~~~ 43 (96)
.|.|--.||||| |...-++|.|-+..+.|- ....+|+.|.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VaLTFDDGp~~~~t~~lL~~L~~~ 62 (224)
T TIGR02884 1 NWGYKRKKNHTPPDAGKEYTELLKKYNAYYLGDTSKKVIYLTFDNGYENGYTPKILDVLKEK 62 (224)
T ss_pred CCCcCcCCCCCCCCCchHHHHHHHhcCCEEecCCCCCEEEEEEECCCCccchHHHHHHHHHc
Confidence 488888999997 334457788877665553 235678877764
No 162
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=32.50 E-value=44 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=18.5
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
|.||++-+. -.++.++.||.|++
T Consensus 218 V~vN~~~v~---~~s~~v~~gD~isi 240 (267)
T PLN00051 218 VRVNWREVT---KNGTTLKTGDVVSV 240 (267)
T ss_pred EEECCEEcC---CCCCCCCCCCEEEE
Confidence 788988763 45689999999986
No 163
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=32.32 E-value=1.2e+02 Score=18.51 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHcCC---CCccceec-CCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 28 YLTGTIKGLIEWLKLNKLT---ERPELFVQ-GDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 28 ~~g~TV~dLL~~L~~~~~~---~~~~lf~~-~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
...+||.||-+.+...... .+.++... .|+ ++.+++- | .++-+++|++|.|
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~------~L~d~~t---L--~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGK------SLKDDDT---L--VDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCc------ccCCccc---H--hhcCCCCCCEEEE
Confidence 3468999999999887543 34445422 232 3334432 2 2345678887654
No 164
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=32.19 E-value=38 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.4
Q ss_pred EEecCCCCCCHHHHHHHHHHHc
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
|+++. ..|++++|+.|+++.
T Consensus 1 i~v~~--~~TL~~lid~L~~~~ 20 (84)
T PF08825_consen 1 IEVSP--SWTLQDLIDSLCEKP 20 (84)
T ss_dssp EEEST--TSBSHHHHHHHHHST
T ss_pred CCcCc--cchHHHHHHHHHhCh
Confidence 35555 799999999999974
No 165
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.08 E-value=61 Score=28.29 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=23.4
Q ss_pred EEEcCcCccccCCcc-cccCCCCEEEEeeccCCC
Q psy9168 64 VLINEADWELYGELT-YELKENDTIMFISTLHGG 96 (96)
Q Consensus 64 VlVNg~Di~~L~Gld-T~L~dgD~V~iiP~vaGG 96 (96)
+...+-+.+.+++.+ ++|+.||++.|-.|=+||
T Consensus 485 v~~~~g~~~~l~~~~t~~l~~GD~~~i~tpGGGG 518 (563)
T COG0146 485 VARKDGDVERLGSKDTTELEPGDVVIIETPGGGG 518 (563)
T ss_pred EEeCCCCeEecCceeeeEcCCCCEEEEECCCCCc
Confidence 333334455555554 779999999999998887
No 166
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=31.79 E-value=71 Score=20.15 Aligned_cols=65 Identities=9% Similarity=-0.107 Sum_probs=34.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCc-----cceecCCccccceEEEEcCcCccccCCcccccCCCCEEE
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERP-----ELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIM 88 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~-----~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ 88 (96)
.-++++.+. |.||-+++....-..|.... ..|...|.= .--+|-|||+.. .--=.|++++|-+|.
T Consensus 9 dG~~v~~~~--G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C-~~C~Vev~g~~~--v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 9 DGKPVEVPP--GETILEALLAAGIDIPRLCYHGRPRGGLCPIGSC-RLCLVEVDGEPN--VRACSTPVEDGMVVE 78 (82)
T ss_dssp TTEEEEEEE--T-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT--SS-EEEESSEEE--EETTT-B--TTEEEE
T ss_pred CCEEEEEcC--CCHHHHHHHHCCCeEEEeeeccCcccccCCcccc-ceEEEEECCCcc--eEcccCCCcCCcEEE
Confidence 456777776 99999999988777664311 222222211 135688998872 123458999998875
No 167
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=31.39 E-value=1e+02 Score=23.70 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcC--ccccCCcccccCCCCEEEEe
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEAD--WELYGELTYELKENDTIMFI 90 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~D--i~~L~GldT~L~dgD~V~ii 90 (96)
.|.|..|+-+.+.+..-... ....-..++-+|..- .....+.++.|++||.|.|=
T Consensus 24 pG~te~ei~~~~~~~i~~~G-------~~~afp~~is~n~~~~H~~p~~~d~~~l~~GDvV~iD 80 (291)
T cd01088 24 PGMTLLEIAEFVENRIRELG-------AGPAFPVNLSINECAAHYTPNAGDDTVLKEGDVVKLD 80 (291)
T ss_pred CCCcHHHHHHHHHHHHHHcC-------CCCCCCceeccCCEeeCCCCCCCCCcccCCCCEEEEE
Confidence 37888888887765442221 111112345566542 12234556899999998864
No 168
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=31.09 E-value=1.7e+02 Score=23.92 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=42.4
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHc-CCCCccceecCCccccceEEEEcCcCccccCCccccc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNK-LTERPELFVQGDSVRPGILVLINEADWELYGELTYEL 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L 81 (96)
|+|--+.. .|||+.| +++..++.||-|++..+...+ +.+.-+---..|.=+. =.+.|||+.+. .=.|++
T Consensus 9 ~r~~~~~~-~~~~~~~-----~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~-C~v~v~G~~~l---aC~~~~ 78 (486)
T PRK06259 9 KRFDPEKD-EPHFESY-----EVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGS-CAVTINGEPVL---ACKTEV 78 (486)
T ss_pred EecCCCCC-CceeEEE-----EEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCC-CEEEECCeEec---ccccCC
Confidence 56644444 7999765 555556999999999877652 2221111111222111 23457997542 234677
Q ss_pred CCCCEEEE
Q psy9168 82 KENDTIMF 89 (96)
Q Consensus 82 ~dgD~V~i 89 (96)
.+|-+|.-
T Consensus 79 ~~~~~i~~ 86 (486)
T PRK06259 79 EDGMIIEP 86 (486)
T ss_pred CCCCEEEe
Confidence 77755543
No 169
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=31.08 E-value=1.3e+02 Score=19.89 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
|.|--++.+++....||.+|-+.+++..|..
T Consensus 10 sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~ 40 (97)
T PF10302_consen 10 SIPDLPLDIPSPNTTTVAWLKQLIRERLPPE 40 (97)
T ss_pred CCCCceeecCCCCcccHHHHHHHHHhhcCCC
Confidence 6788888888777899999999999999544
No 170
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family. modifies uracil-65 in transfer RNAs to pseudouridine.
Probab=31.06 E-value=53 Score=24.98 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=18.2
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.|.|||+-+ ...++.|+.||+|.+.
T Consensus 32 ~V~VNg~~~---~~~~~~v~~gd~I~i~ 56 (299)
T TIGR00005 32 QVKVNGKVT---ANPKLKVKDGDRITVR 56 (299)
T ss_pred cEEECCEec---cCcccCCCCCCEEEEe
Confidence 477899533 2347899999999883
No 171
>PF03339 Pox_L3_FP4: Poxvirus L3/FP4 protein; InterPro: IPR005007 This is a family of proteins expressed by members of the Poxviridae.
Probab=31.05 E-value=52 Score=26.77 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=34.6
Q ss_pred ccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 57 SVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 57 ~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
...||.+|+|...|.-..|=.=|.+...|.|.++=..-||
T Consensus 252 ~~epGtlV~v~~~D~~~~GItlt~vsisdnVrvi~S~dgg 291 (319)
T PF03339_consen 252 FTEPGTLVYVPRNDAYVYGITLTEVSISDNVRVIFSSDGG 291 (319)
T ss_pred cCCCceEEEEEcCCeEEEeeEEEEEeccccEEEEEecCCC
Confidence 3679999999988887778788999999999998887776
No 172
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=30.88 E-value=27 Score=22.21 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=20.2
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
-.|++|-+|.+-+ -|+|||.|.+..+-
T Consensus 30 ~~v~inp~dA~~~-----Gi~~Gd~V~v~s~~ 56 (110)
T PF01568_consen 30 PFVEINPEDAAKL-----GIKDGDWVRVSSPR 56 (110)
T ss_dssp EEEEEEHHHHHHC-----T--TTCEEEEEETT
T ss_pred CEEEEcHHHHHHh-----cCcCCCEEEEEecc
Confidence 4788899998876 49999999998753
No 173
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=30.75 E-value=48 Score=24.43 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=18.5
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.|+|||+-+. -.++.|+.||.|.+.
T Consensus 26 ~V~VNg~~~~---~~~~~l~~gd~I~l~ 50 (232)
T PRK10839 26 RVTVDGEIVK---NGAFKLLPEHDVAYD 50 (232)
T ss_pred eEEECCEEec---cCCcCcCCCCEEEEC
Confidence 4778998653 235789999998874
No 174
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=30.72 E-value=56 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 65 LINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 65 lVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+-|| -|-+---.++.|++||++.++.+++|
T Consensus 123 ~r~G-kI~fhP~Dd~vL~e~DklLvIa~~~~ 152 (206)
T PF06241_consen 123 KRDG-KIVFHPDDDYVLREGDKLLVIAPVNG 152 (206)
T ss_pred eeCC-eeEECCCCCceeecCCEEEEEeecCC
Confidence 3444 33333445788999999999999886
No 175
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=30.44 E-value=70 Score=24.17 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCc--cceec----CCccccceEEEEcCcCcccc
Q psy9168 34 KGLIEWLKLNKLTERP--ELFVQ----GDSVRPGILVLINEADWELY 74 (96)
Q Consensus 34 ~dLL~~L~~~~~~~~~--~lf~~----~g~lr~~V~VlVNg~Di~~L 74 (96)
+.+|++|.++++..+. .++.+ +|..+.+=+.-|||++|.|.
T Consensus 65 kGviQALGN~FGSy~~~Pyi~LdgDDRtG~~~dGE~l~Ing~~~khi 111 (200)
T COG4110 65 KGVIQALGNAFGSYRDEPYVQLDGDDRTGDVSDGEWLHINGREWKHI 111 (200)
T ss_pred hHHHHHHhhhhcccccCceEEecCCcCCCcccCCceEEEcchhhhhh
Confidence 6799999999987643 44442 36688899999999998875
No 176
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=29.43 E-value=81 Score=23.39 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCC-CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTE-RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~-~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+.++++.|. -.||.|=.+ +...+|+. .++||..+-+= .+.+|.+.++-.--|.++.-.+..+ +|+|-++
T Consensus 18 ~~~tveHpp--v~tveEs~~-~~~eipgghtKnLfLkdkK~-q~~lv~~~e~~~vDLk~ih~~IG~~-RlsFg~~ 87 (164)
T COG3760 18 DHTTVEHPP--VFTVEESQA-LRDEIPGGHTKNLFLKDKKD-QFFLVTVDEDAVVDLKSIHETIGAA-RLSFGSP 87 (164)
T ss_pred CcccccCCC--ceehHHHHH-HHhhcCCCccceeEeecCCC-CEEEEEecccceecHHHHHHHhcee-eeecCCH
Confidence 455666666 678877655 45557666 78899876554 6788888888766677777677777 7777654
No 177
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=29.30 E-value=95 Score=19.56 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=17.1
Q ss_pred EEecCCCCCCHHHHHHHHHHHcC
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
|.+.. |.|++|+|+.+.++..
T Consensus 14 V~vrp--g~ti~d~L~~~c~kr~ 34 (72)
T cd01760 14 VPVRP--GMSVRDVLAKACKKRG 34 (72)
T ss_pred EEECC--CCCHHHHHHHHHHHcC
Confidence 45544 9999999999999884
No 178
>PRK10220 hypothetical protein; Provisional
Probab=29.16 E-value=54 Score=22.87 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=11.6
Q ss_pred CcccccCCCCEEEEee
Q psy9168 76 ELTYELKENDTIMFIS 91 (96)
Q Consensus 76 GldT~L~dgD~V~iiP 91 (96)
---+.|.+||.|+++=
T Consensus 47 snG~~L~dGDsV~viK 62 (111)
T PRK10220 47 ANGNLLADGDSVTIVK 62 (111)
T ss_pred CCCCCccCCCEEEEEe
Confidence 3347888888888873
No 179
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=29.05 E-value=73 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=22.5
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
|-|.-|++=| .--|..++|+.||++.++-.
T Consensus 117 IAI~r~~e~I-~SPgPy~vle~gDtlvviG~ 146 (162)
T COG0490 117 IAIVRNEEKI-LSPGPYTVLEAGDTLVVIGE 146 (162)
T ss_pred EEEEecCcEe-cCCCchhhhcCCCEEEEEec
Confidence 4456666554 45789999999999998753
No 180
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=29.05 E-value=54 Score=25.27 Aligned_cols=23 Identities=22% Similarity=0.227 Sum_probs=18.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
|.|||+-+. -.++.|+.||.|++
T Consensus 210 V~VNg~~v~---~~s~~v~~gD~Isv 232 (257)
T TIGR03069 210 LRLNWKTVT---QPSRELKVGDRLQL 232 (257)
T ss_pred EEECCEEcC---CCCCcCCCCCEEEE
Confidence 788997663 34679999999986
No 181
>COG4390 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.66 E-value=47 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.3
Q ss_pred CccccCCcccccCCCCEEEEeeccCC
Q psy9168 70 DWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 70 Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
.|+.++|++-.=.+|.+|.-||.+.|
T Consensus 12 ~Id~l~gldi~DG~g~~vh~Ipa~~G 37 (106)
T COG4390 12 SIDHLGGLDVQDGDGKTVHHIPAVQG 37 (106)
T ss_pred CcccccceeeecCCCceEeecccccC
Confidence 36778888777778888999999887
No 182
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=28.45 E-value=1.5e+02 Score=18.41 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=35.8
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|+.++. ..||++|=+.|...++-. .-+|...+.. .+-.+...+.|-+.|+ .+.++||++|.+.
T Consensus 17 ekr~~~--~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~--~~~~~~~~~dd~~~L~--~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 17 EKRFPK--SITVSELKQKLEKLTGIPPSDMRLQLKSDK--DDSKIEELDDDDATLG--SYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEET--TSBHHHHHHHHHHHHTS-TTTEEEEEE-TS--SSSEEEESSGSSSBCC--HHT-STTEEEEEE
T ss_pred EEEcCC--CCCHHHHHHHHHHHhCCCcccEEEEEEecC--CCccccccCCCccEee--cCCCCCCCEEEEE
Confidence 344554 899999999998888644 2233322111 1112222344555564 4679999999875
No 183
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=28.35 E-value=65 Score=25.01 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=25.6
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
...|.|.++|+-..+--|..-.|++|..|++.|-+
T Consensus 136 ~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 136 DTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred CCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 46899999999988888989999999999998854
No 184
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=28.28 E-value=98 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.0
Q ss_pred cccccCCCCEEEEee
Q psy9168 77 LTYELKENDTIMFIS 91 (96)
Q Consensus 77 ldT~L~dgD~V~iiP 91 (96)
.+..|++||.|.+-.
T Consensus 148 ~n~~L~~gD~I~Vp~ 162 (165)
T TIGR03027 148 ANVELKPGDVLIIPE 162 (165)
T ss_pred CCceeCCCCEEEEec
Confidence 567899999998743
No 185
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=28.20 E-value=66 Score=18.85 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q psy9168 30 TGTIKGLIEWLKLNKLTER 48 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~~ 48 (96)
+.|+.++++.|.++|....
T Consensus 29 ~~t~~ei~~~l~~~y~~~~ 47 (68)
T PF05402_consen 29 PRTVEEIVDALAEEYDVDP 47 (68)
T ss_dssp SS-HHHHHHHHHHHTT--H
T ss_pred CCCHHHHHHHHHHHcCCCH
Confidence 6899999999999995443
No 186
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=27.63 E-value=33 Score=28.11 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=14.1
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
++|.++.++|||.|.|
T Consensus 349 ~eGK~YivqDGDIi~f 364 (368)
T TIGR00092 349 LEGKYYVVDDGDVLFF 364 (368)
T ss_pred hcCCeEEeeCCeEEEE
Confidence 5788999999999887
No 187
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=27.59 E-value=1.8e+02 Score=24.85 Aligned_cols=60 Identities=7% Similarity=0.009 Sum_probs=34.1
Q ss_pred ccCCCCceEEecCCC---CCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 15 FDSFPKPTVLFSSYL---TGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 15 ~~~~~~~~ve~~~~~---g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+..+-.+.++++.+. |.|++|+-..- ++ .+.. +.|..+|+-+ .-..+|.|+.||.+.+.-
T Consensus 214 ~~~~~~r~~~V~~~s~liGkTl~el~~~~--~~-----~v~I--------~~I~R~g~~~--~p~~dtvL~~GD~L~V~G 276 (562)
T TIGR03802 214 LPELVGRAYRVNRASSLIGKTVGDLENLF--AG-----RVTI--------ERIRRDGKLL--TVSPDLVLNAGDVVLVVG 276 (562)
T ss_pred cCceeeEEEEECCCcccCCCcHHHHHhhh--CC-----CeEE--------EEEEECCEEE--cCCCCCeeCCCCEEEEEE
Confidence 344556777887755 67888876322 11 1110 1122344433 245678899999988753
No 188
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.40 E-value=1.1e+02 Score=21.87 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY 74 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L 74 (96)
..+-..|+.+++...-..++++...-.+..|.+|-++++..|..
T Consensus 79 ~~~~~fi~~vA~~~~V~~~~v~VNst~l~dG~iVki~~~yYrV~ 122 (149)
T PF11694_consen 79 SQMVHFIESVAKDLGVSKEEVYVNSTALTDGMIVKIGDKYYRVI 122 (149)
T ss_pred HHHHHHHHHHHHHhCCChheEEEecccccCCeEEEECCccEEEE
Confidence 45677889999998777889999888999999999999988864
No 189
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=39 Score=27.97 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.1
Q ss_pred ccCCcccccCCCCEEEE
Q psy9168 73 LYGELTYELKENDTIMF 89 (96)
Q Consensus 73 ~L~GldT~L~dgD~V~i 89 (96)
.+.|.|+.++|||+|.|
T Consensus 352 r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 352 RLEGKDYIVQDGDVIHF 368 (372)
T ss_pred eeccccceecCCCEEEE
Confidence 35788999999999954
No 190
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=27.15 E-value=2.7e+02 Score=23.92 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.2
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
.++.+...+..|.+|++.|.+..|..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 46788888999999999999988754
No 191
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=26.79 E-value=86 Score=21.58 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred ceEEEEcCcCccccCCc------------ccccCCCCEEEEee
Q psy9168 61 GILVLINEADWELYGEL------------TYELKENDTIMFIS 91 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~Gl------------dT~L~dgD~V~iiP 91 (96)
+..|++||+....++.. +-.++.||+|.++-
T Consensus 52 ~~~v~i~G~~~pivG~v~MD~~~vdvt~~~~~v~~GD~V~l~G 94 (129)
T PF00842_consen 52 GGYVLINGKRCPIVGRVCMDMTMVDVTDIEPDVKVGDEVTLFG 94 (129)
T ss_dssp TEEEEETTEEEEEES---SS-EEEEESTSTST--TT-EEEEEE
T ss_pred CcEEEECCEEEEEEEEEEeeEEEEEcCCCCCCCCCCCEEEEEC
Confidence 45788999987776642 13678899999985
No 192
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=26.76 E-value=48 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=19.7
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+.+.+.|.-.-..+|....++.||.+.|-|
T Consensus 25 ~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p 55 (136)
T PF02311_consen 25 EIIYVLSGEGTLHIDGQEYPLKPGDLFLIPP 55 (136)
T ss_dssp EEEEEEEE-EEEEETTEEEEE-TT-EEEE-T
T ss_pred EEEEEeCCEEEEEECCEEEEEECCEEEEecC
Confidence 3556666776666788889999999886655
No 193
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=26.41 E-value=77 Score=21.82 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=15.6
Q ss_pred EEecCCCCCCHHHHHHHHHHHcC
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
++++. ..|++++|+++.++|.
T Consensus 37 ~~v~~--~~Tl~~li~~~~~~~~ 57 (125)
T PF09358_consen 37 IEVNG--DMTLQELIDYFKEKYG 57 (125)
T ss_dssp EEEES----BHHHHHHHHHHTTS
T ss_pred EEEcC--CCCHHHHHHHHHHHhC
Confidence 34544 6999999999999995
No 194
>KOG0324|consensus
Probab=26.37 E-value=86 Score=24.17 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=35.7
Q ss_pred ecCccCCCCCccCCCCceEEecCCCC--CCHHHHHHHHHHHcCCCCccceecC
Q psy9168 5 FPLEKNHTPYFDSFPKPTVLFSSYLT--GTIKGLIEWLKLNKLTERPELFVQG 55 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ve~~~~~g--~TV~dLL~~L~~~~~~~~~~lf~~~ 55 (96)
|-.+..-+|+|. ++|.|.+....- .-|++.|+.|.+.|.+...+|+..+
T Consensus 62 fe~~P~~~~~f~--fr~sI~lG~Td~~~~~v~~~le~L~~ey~G~~YhL~~kN 112 (214)
T KOG0324|consen 62 FEVEPGNCPEFT--FRKSILLGSTDLTEDDVRRILEELSEEYRGNSYHLLTKN 112 (214)
T ss_pred EeeCCCCCCCCc--eeEEEEecCCCCCHHHHHHHHHHHHhhcCCceehhhhhc
Confidence 445666778853 566677755332 3689999999999999999998754
No 195
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.22 E-value=75 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=23.1
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+++-+-|+=.-.++|....|++||.|.+-|
T Consensus 66 ~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~ 96 (131)
T COG1917 66 QTIYVLEGEGTVQLEGEKKELKAGDVIIIPP 96 (131)
T ss_pred eEEEEEecEEEEEecCCceEecCCCEEEECC
Confidence 4555556665555678889999999998877
No 196
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=26.03 E-value=1.7e+02 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
.++-..+|. ..||++++..|+.+..
T Consensus 33 dk~KfLvp~--~~tv~qf~~~ir~rl~ 57 (104)
T PF02991_consen 33 DKKKFLVPK--DLTVGQFVYIIRKRLQ 57 (104)
T ss_dssp SSSEEEEET--TSBHHHHHHHHHHHTT
T ss_pred CccEEEEcC--CCchhhHHHHhhhhhc
Confidence 445566777 8999999999999883
No 197
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.03 E-value=1.4e+02 Score=20.76 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcc
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWE 72 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~ 72 (96)
.+|++|++. ....++.-+......|-|+|||+=|.
T Consensus 84 ~~l~ell~l-------~~Gsvi~Ld~~~~~~VdI~vNg~~Ig 118 (136)
T COG1886 84 MPLGELLAL-------GKGSVIELDKLAGEPVDILVNGRLIG 118 (136)
T ss_pred eeHHHHHhc-------CCCCEEEcCCcCCCceEEEECCEEEE
Confidence 456666652 24466666656677899999999764
No 198
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.81 E-value=76 Score=22.39 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=23.3
Q ss_pred cceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 60 PGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 60 ~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
..-.|-+.|..|+.....+.+ .||.|.++-
T Consensus 100 g~g~Vkv~g~~Wra~~~~~l~--~G~~V~Vv~ 129 (140)
T COG1585 100 GRGRVKVEGESWRARSDEDLP--AGDRVEVVG 129 (140)
T ss_pred CeEEEEECCeEeEEecCCCCC--CCCEEEEEE
Confidence 456688999999988654444 999998864
No 199
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=25.74 E-value=1.7e+02 Score=18.13 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=36.9
Q ss_pred CCCCce-EEec-CCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 17 SFPKPT-VLFS-SYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 17 ~~~~~~-ve~~-~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
....++ +.++ .....||+++=+.+.+..+ ....+|+- .|+ +|=+++- | .++-+++|+.|.+.-.
T Consensus 7 ~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~-~Gk------~L~D~~t---L--~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 7 TMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY-RGK------QMEDGHT---L--FDYNVGLNDIIQLLVR 74 (78)
T ss_pred cCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe-CCE------ECCCCCC---H--HHcCCCCCCEEEEEEe
Confidence 344444 3453 3447899999999988763 22334443 232 2223222 2 3567899999887653
No 200
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=25.65 E-value=1.1e+02 Score=20.02 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcC--cccc
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEAD--WELY 74 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~D--i~~L 74 (96)
..++++++.+++..+...-... +..+-.|.+.++-+|++ |++.
T Consensus 34 ~e~~~ll~e~a~lSdkI~~~~~-~~~~~~P~~~i~~~~~~~gIrF~ 78 (94)
T cd02974 34 AELLELLEEIASLSDKITLEED-NDDERKPSFSINRPGEDTGIRFA 78 (94)
T ss_pred HHHHHHHHHHHHhCCceEEEEe-cCCCCCCEEEEecCCCcccEEEE
Confidence 4578888888887765432222 22234688888777755 6664
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=25.54 E-value=3.6e+02 Score=21.68 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=39.6
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceE--EEEcCcCc------------cccCCcccccCCCCE
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGIL--VLINEADW------------ELYGELTYELKENDT 86 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~--VlVNg~Di------------~~L~GldT~L~dgD~ 86 (96)
+.+.++...+..+.+|++.|.+..+...+.. +..+|=.|- ..|+|... +...| .|+.||.
T Consensus 172 ~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~---~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G---~i~~gd~ 245 (406)
T TIGR03680 172 PIIPVSALHNANIDALLEAIEKFIPTPERDL---DKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG---KLKVGDE 245 (406)
T ss_pred eEEEEECCCCCChHHHHHHHHHhCCCCCCCC---CCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC---EEeCCCE
Confidence 4567787778999999999998765332211 112221111 12444211 22344 6899999
Q ss_pred EEEeec
Q psy9168 87 IMFIST 92 (96)
Q Consensus 87 V~iiP~ 92 (96)
|.|.|.
T Consensus 246 v~i~P~ 251 (406)
T TIGR03680 246 IEIRPG 251 (406)
T ss_pred EEEccC
Confidence 999986
No 202
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.49 E-value=1.5e+02 Score=22.17 Aligned_cols=51 Identities=22% Similarity=0.083 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEE---cCcCccccCCcccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLI---NEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlV---Ng~Di~~L~GldT~L~dgD~V~i 89 (96)
.+.|+.++|..-..--+. +.. ..+.|+. ||+-......+...|++||.|.+
T Consensus 181 ~~~tl~~al~~aGG~~~~---------a~~-~~v~i~R~~~~g~~~~~~~~~~~~l~~gDii~V 234 (239)
T TIGR03028 181 RNMTVMQALAQGGGLTPR---------GTE-RGIRVMRRDDKGAVEEVSGELGDLVQPDDVIYV 234 (239)
T ss_pred CCCCHHHHHHhcCCCCcc---------cCc-ceEEEEEECCCCcEEEEecCCCcccCCCCEEEE
Confidence 378998888765422211 111 1222321 22212222334457999999876
No 203
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=25.40 E-value=47 Score=23.09 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=37.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCc--------cceec--CCc-cccceEEEEcCcC--ccccCCcccccC
Q psy9168 16 DSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERP--------ELFVQ--GDS-VRPGILVLINEAD--WELYGELTYELK 82 (96)
Q Consensus 16 ~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~--------~lf~~--~g~-lr~~V~VlVNg~D--i~~L~GldT~L~ 82 (96)
++.|+.|+.+=-=..+|++||...|.+..++.++ .++-+ .|+ ....+-..+.|+. -+..--.+....
T Consensus 32 ~~~P~~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~ 111 (120)
T PF06487_consen 32 GSLPRNELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFV 111 (120)
T ss_dssp CS-TTTEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--
T ss_pred CCCCcCeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcc
Confidence 4567778876655689999999999998876532 12212 233 2233445555542 111122345677
Q ss_pred CCCEEEE
Q psy9168 83 ENDTIMF 89 (96)
Q Consensus 83 dgD~V~i 89 (96)
-||-|.+
T Consensus 112 iGDyidv 118 (120)
T PF06487_consen 112 IGDYIDV 118 (120)
T ss_dssp TT-EEEE
T ss_pred cCCEEEE
Confidence 7887764
No 204
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=25.33 E-value=59 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=18.8
Q ss_pred cccCCcccccCCCCEEEEeeccCCC
Q psy9168 72 ELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 72 ~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.|.|..-.-++||+|+||-.-+-|
T Consensus 20 eVLKGvSL~A~~GdVisIIGsSGSG 44 (256)
T COG4598 20 EVLKGVSLQANAGDVISIIGSSGSG 44 (256)
T ss_pred hhhcceeeecCCCCEEEEecCCCCc
Confidence 4567777788999999999765443
No 205
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=25.31 E-value=65 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.9
Q ss_pred cCcCccccCCcccccCCCCEEEEeec
Q psy9168 67 NEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 67 Ng~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
.+..+++...+...+..||.|++.|-
T Consensus 27 ~~~~l~L~~p~~~~~~~G~~v~l~~G 52 (80)
T PF09356_consen 27 EGGTLTLWRPLPAGLAVGDTVTLYPG 52 (80)
T ss_pred cCCEEEEeccCcccCCCCCEEEEEeC
Confidence 44567777888888999999999884
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=25.26 E-value=3.5e+02 Score=21.89 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=39.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceE-E-EEcCcCc------------cccCCcccccCCCCE
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGIL-V-LINEADW------------ELYGELTYELKENDT 86 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~-V-lVNg~Di------------~~L~GldT~L~dgD~ 86 (96)
+.+.++...+..+.+|++.|.+..+...+.. +..+|=.|. + .|+|... +...| .|+.||.
T Consensus 177 ~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~---~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G---~l~~gd~ 250 (411)
T PRK04000 177 PIIPVSALHKVNIDALIEAIEEEIPTPERDL---DKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG---VLKVGDE 250 (411)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCCCCCC---CCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC---EEecCCE
Confidence 4567888788999999999998766432211 122221111 1 2333211 23344 6899999
Q ss_pred EEEeec
Q psy9168 87 IMFIST 92 (96)
Q Consensus 87 V~iiP~ 92 (96)
|.|.|.
T Consensus 251 v~i~P~ 256 (411)
T PRK04000 251 IEIRPG 256 (411)
T ss_pred EEEcCC
Confidence 999985
No 207
>PRK06789 flagellar motor switch protein; Validated
Probab=24.99 E-value=1.2e+02 Score=19.42 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=26.0
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcc
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWE 72 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~ 72 (96)
+|+.. ...+++||++. ....++.=+......+.|++||+-+.
T Consensus 13 velGr-~~~~i~dll~L-------~~Gsvi~Ldk~~~epvdI~vNg~lia 54 (74)
T PRK06789 13 FEIGN-TKKKIEDLLHI-------TKGTLYRLENSTKNTVRLMLENEEIG 54 (74)
T ss_pred EEEee-eEeEHHHHhcC-------CCCCEEEeCCcCCCCEEEEECCEEEe
Confidence 34443 22577777752 23355554555667899999998764
No 208
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=24.67 E-value=46 Score=21.96 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCccc
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVR 59 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr 59 (96)
..++++|+.|.+.+|+.+.+++..-.+++
T Consensus 40 ~~~k~~L~~LE~~~P~~k~~i~~s~~~~~ 68 (104)
T TIGR00269 40 ARIRDFLYDLENKKPGVKFSVLRGFEKLI 68 (104)
T ss_pred HHHHHHHHHHHHHCcChHHHHHHHHHHHH
Confidence 68999999999999999888876433444
No 209
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=24.47 E-value=54 Score=21.40 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=19.9
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
.-.|.+|-.|-+-+ -|++||.|.+..+.
T Consensus 32 ~~~v~in~~dA~~l-----gi~~Gd~V~v~s~~ 59 (115)
T cd02779 32 LPYIEVNPEDAKRE-----GLKNGDLVEVYNDY 59 (115)
T ss_pred CCEEEECHHHHHHc-----CCCCCCEEEEEeCC
Confidence 34577888887655 58888888887653
No 210
>PHA02582 10 baseplate wedge subunit and tail pin; Provisional
Probab=24.44 E-value=84 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.4
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
.++=+|-++|++||+- .|.+.||.|.|..-+.|
T Consensus 216 ~~g~l~~LdG~~Irlr----~pc~~gDtv~i~ty~dg 248 (604)
T PHA02582 216 NPGELVPLDGKSIRLR----QPCNAGDTVQIVTYMDG 248 (604)
T ss_pred CCCceeccCCceeEee----cccCCCCeEEEEEeecc
Confidence 6788999999999975 69999999999876654
No 211
>PRK14132 riboflavin kinase; Provisional
Probab=24.40 E-value=49 Score=23.38 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=8.9
Q ss_pred ccCCCCEEEE
Q psy9168 80 ELKENDTIMF 89 (96)
Q Consensus 80 ~L~dgD~V~i 89 (96)
.|+|||+|.|
T Consensus 115 ~LkDGD~V~I 124 (126)
T PRK14132 115 NLKDGDVVKI 124 (126)
T ss_pred CCCCCCEEEE
Confidence 6999999987
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=24.35 E-value=3.3e+02 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=21.8
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
.+..+...+..|.+|++.|.+..|..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCccc
Confidence 46788888899999999999888754
No 213
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.31 E-value=1.2e+02 Score=23.28 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCcccee
Q psy9168 10 NHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFV 53 (96)
Q Consensus 10 ~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~ 53 (96)
||.--.-.||++.-.+.+..|+-++|.+..|.+++|...-.+|.
T Consensus 5 ~~k~~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p 48 (319)
T PF02601_consen 5 NRKKPLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYP 48 (319)
T ss_pred ccCCCCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33333446899988999999999999999999999866545543
No 214
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=24.26 E-value=72 Score=24.93 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=19.7
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.|.|||+.+. ..++.|+.||+|.+..
T Consensus 44 ~V~VNg~~v~---~~~~~v~~gD~I~v~~ 69 (325)
T PRK11180 44 RVLVNGKVIN---KPKEKVLGGEQVAIDA 69 (325)
T ss_pred CEEECCEEcc---CCCcCcCCCCEEEEee
Confidence 4778998763 2467899999998864
No 215
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=24.21 E-value=1.7e+02 Score=26.32 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=23.2
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
-+-.-|||+=+- ++|+|+.||.|-|+-.=+
T Consensus 422 c~gAkVnG~ivp----l~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 422 CIGAKVNGRIVP----LTTKLQTGDQVEIITSKH 451 (701)
T ss_pred eeEEEECCEEec----cceecCCCCEEEEEeCCC
Confidence 355788997654 479999999999986543
No 216
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=24.19 E-value=55 Score=20.42 Aligned_cols=13 Identities=0% Similarity=0.118 Sum_probs=10.3
Q ss_pred eEEEEcCcCcccc
Q psy9168 62 ILVLINEADWELY 74 (96)
Q Consensus 62 V~VlVNg~Di~~L 74 (96)
+.+.|||+.+++|
T Consensus 1 ~~v~InG~~~~fL 13 (86)
T cd06095 1 VTITVEGVPIVFL 13 (86)
T ss_pred CEEEECCEEEEEE
Confidence 3578899988876
No 217
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=23.59 E-value=92 Score=24.58 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=23.0
Q ss_pred cceEEEEcCcCcccc-CCcccccCCCCEEEEeecc
Q psy9168 60 PGILVLINEADWELY-GELTYELKENDTIMFISTL 93 (96)
Q Consensus 60 ~~V~VlVNg~Di~~L-~GldT~L~dgD~V~iiP~v 93 (96)
..|+||=|+.++... ......+++. .|.++|+-
T Consensus 144 ~~VivLPNn~ni~~aa~qa~~~~~~~-~v~VipTk 177 (313)
T PF13684_consen 144 DEVIVLPNNKNIILAAEQAARLSEDK-NVVVIPTK 177 (313)
T ss_pred CeEEEEeCCchHHHHHHHHHHHhcCC-CEEEEecC
Confidence 478999999998754 3333444455 49999974
No 218
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.59 E-value=58 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=19.0
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
-.|++|-.|-+-+ -|++||.|.+...
T Consensus 35 ~~v~in~~dA~~l-----gi~~Gd~V~v~~~ 60 (116)
T cd02790 35 EYVEINPEDAKRL-----GIEDGEKVRVSSR 60 (116)
T ss_pred cEEEECHHHHHHc-----CCCCCCEEEEEcC
Confidence 3477788877655 5788998888765
No 219
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=23.53 E-value=1.2e+02 Score=18.68 Aligned_cols=20 Identities=10% Similarity=-0.145 Sum_probs=16.0
Q ss_pred cCCCCCCHHHHHHHHHHHcC
Q psy9168 26 SSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 26 ~~~~g~TV~dLL~~L~~~~~ 45 (96)
....|.|++|+|+.+.+++.
T Consensus 16 ~vrpg~ti~d~L~~~~~kr~ 35 (71)
T PF02196_consen 16 QVRPGMTIRDALSKACKKRG 35 (71)
T ss_dssp EE-TTSBHHHHHHHHHHTTT
T ss_pred EEcCCCCHHHHHHHHHHHcC
Confidence 33449999999999999884
No 220
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=23.29 E-value=1.5e+02 Score=23.92 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCc
Q psy9168 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEA 69 (96)
Q Consensus 32 TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~ 69 (96)
+-..||.+|...+.+.+..+.+..|+.-++..|.|.|.
T Consensus 274 n~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~ 311 (363)
T cd06245 274 NKKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGG 311 (363)
T ss_pred HHHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCC
Confidence 45668999999998888889888888888999999985
No 221
>PF11580 DUF3239: Protein of unknown function (DUF3239); InterPro: IPR021632 This entry contains possible membrane proteins, however this cannot be confirmed. Currently they have no known function. ; PDB: 3C8I_B.
Probab=23.20 E-value=40 Score=23.83 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=19.0
Q ss_pred ccceecCCccccceEEEEcCcCccccCCcccccCC
Q psy9168 49 PELFVQGDSVRPGILVLINEADWELYGELTYELKE 83 (96)
Q Consensus 49 ~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~d 83 (96)
+++| ++|.|-|.|++-+|.+++.+|-=.|+-..+
T Consensus 8 ~~~Y-~~~~LvPavV~ev~pr~v~llalvd~~~d~ 41 (128)
T PF11580_consen 8 QSLY-DNGPLVPAVVAEVNPRDVVLLALVDTAVDP 41 (128)
T ss_dssp ---------EEEEEEEEE-SS-EEEEEEEE-BSST
T ss_pred hhhh-hcCCCCcEEEEEecCcceehhhhhhhcCCC
Confidence 4566 578999999999999999988666665554
No 222
>PHA02609 uvsW.1 hypothetical protein; Provisional
Probab=23.19 E-value=32 Score=22.49 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=20.5
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
.+|++++.....++|+|+|+--+..+
T Consensus 39 R~KE~elk~sdDIsvRDAlaGrr~el 64 (76)
T PHA02609 39 RVKEVELKDSDDISVRDALAGRRAEL 64 (76)
T ss_pred HHHhhcCCccccchHHHHHccHHHHH
Confidence 46889999888999999998554443
No 223
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.17 E-value=56 Score=22.85 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=12.7
Q ss_pred CcccccCCCCEEEEee
Q psy9168 76 ELTYELKENDTIMFIS 91 (96)
Q Consensus 76 GldT~L~dgD~V~iiP 91 (96)
-....|+|||.|++|-
T Consensus 48 snGn~L~dGDsV~lIK 63 (112)
T COG2824 48 SNGNLLADGDSVTLIK 63 (112)
T ss_pred CCCcEeccCCeEEEEE
Confidence 3346899999999984
No 224
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=22.96 E-value=74 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEcCcCccccCC---------c-c-cccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGE---------L-T-YELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~G---------l-d-T~L~dgD~V~iiP 91 (96)
-|+|||+.+..+|. + + -.++-||+|.||-
T Consensus 296 ~v~i~g~~~~i~G~i~MD~~~vdv~~~~~~~~Gd~v~l~g 335 (367)
T TIGR00492 296 PVLVNGKRVPIVGRVCMDMIMVDLGPDLQDKTGDEVILWG 335 (367)
T ss_pred EEEECCEEeeeeeEEecceEEEECCCCCCCCCCCEEEEEC
Confidence 58999999988774 1 1 1366799999984
No 225
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.53 E-value=81 Score=26.70 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.+|||.+...=.| --+|.+||+|.|
T Consensus 71 l~VNgs~~~~g~~-~~RLqqGd~i~i 95 (430)
T COG3456 71 LLVNGSDLPLGEG-SARLQQGDEILI 95 (430)
T ss_pred eeecccccCCCCC-ccccccCCEEee
Confidence 6789999765444 589999999986
No 226
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=22.18 E-value=74 Score=23.57 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=14.3
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
++.++. ..||+||++.+..+..
T Consensus 37 ~~~vpk--~~tV~Dll~~l~~k~~ 58 (213)
T PF14533_consen 37 ELLVPK--TGTVSDLLEELQKKVG 58 (213)
T ss_dssp EE--BT--T-BHHHHHHHHHTT--
T ss_pred EEEECC--CCCHHHHHHHHHHHcC
Confidence 344555 8999999999999874
No 227
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=22.02 E-value=2.1e+02 Score=17.84 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=31.0
Q ss_pred cCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcC---CCCccceecCC
Q psy9168 9 KNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKL---TERPELFVQGD 56 (96)
Q Consensus 9 ~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~---~~~~~lf~~~g 56 (96)
+|-.||| +...+.++...-.|...||+.|.+... ..-+.|+.-+|
T Consensus 7 rNGD~~~---~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g 54 (80)
T cd01617 7 RNGDPFF---KGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDG 54 (80)
T ss_pred ECCCCCC---CCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCC
Confidence 5667776 345566666444699999999999885 23456776555
No 228
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=21.87 E-value=2.1e+02 Score=20.78 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=17.2
Q ss_pred eEEEEcCcCccccC---CcccccCCCCEEEEe
Q psy9168 62 ILVLINEADWELYG---ELTYELKENDTIMFI 90 (96)
Q Consensus 62 V~VlVNg~Di~~L~---GldT~L~dgD~V~ii 90 (96)
.+|.+|.......- ..+.+|++||.|.+=
T Consensus 61 ~~v~~n~~~~H~~p~~~~~~~~l~~Gd~v~iD 92 (228)
T cd01089 61 TCISVNNCVCHFSPLKSDATYTLKDGDVVKID 92 (228)
T ss_pred eEeccCceeecCCCCCCCCCcccCCCCEEEEE
Confidence 45666643222211 346789999998763
No 229
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=21.76 E-value=46 Score=20.28 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=20.0
Q ss_pred ceEEEEcCcCccccCCcccc---cCCCCEEEE
Q psy9168 61 GILVLINEADWELYGELTYE---LKENDTIMF 89 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~---L~dgD~V~i 89 (96)
.+++-|||+.+.-...+... .+.|+.|.+
T Consensus 36 D~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l 67 (82)
T PF13180_consen 36 DIILAINGKPVNSSEDLVNILSKGKPGDTVTL 67 (82)
T ss_dssp EEEEEETTEESSSHHHHHHHHHCSSTTSEEEE
T ss_pred cEEEEECCEEcCCHHHHHHHHHhCCCCCEEEE
Confidence 68999999988554444333 467777765
No 230
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=21.56 E-value=1e+02 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCCCceEEecC---------CCCCCHHHHHHHHHHHcCCC
Q psy9168 17 SFPKPTVLFSS---------YLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 17 ~~~~~~ve~~~---------~~g~TV~dLL~~L~~~~~~~ 47 (96)
-+|..-|.++. +...||.++++.|.++|++.
T Consensus 26 L~PEgmi~Lnetg~~Iw~~~DG~~tv~eIi~~L~~~y~~~ 65 (88)
T PRK02079 26 LYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDV 65 (88)
T ss_pred EcCCeeeeechHHHHHHHHccCCCCHHHHHHHHHHHccch
Confidence 35666666633 23579999999999999654
No 231
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=21.53 E-value=95 Score=27.04 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=23.4
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
..|..||+.++.-+ +|.|++||.+.++-+
T Consensus 442 ~~v~Rd~q~i~p~g--~t~l~~gD~l~v~~~ 470 (574)
T COG3263 442 AAVFRDGQLIHPQG--STRLREGDVLCVIGS 470 (574)
T ss_pred eeEEecCceeccCC--CceeecCCEEEEEec
Confidence 45788999987654 699999999998743
No 232
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=21.47 E-value=54 Score=22.97 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=5.8
Q ss_pred ccCCCCEEEE
Q psy9168 80 ELKENDTIMF 89 (96)
Q Consensus 80 ~L~dgD~V~i 89 (96)
.|+|||+|.+
T Consensus 110 ~L~DGD~V~v 119 (121)
T PF01982_consen 110 GLKDGDEVEV 119 (121)
T ss_dssp T--TT-EEEE
T ss_pred CCCCCCEEEE
Confidence 5899999986
No 233
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.38 E-value=71 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=22.0
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
-.|.+|-+|-+-+ -|+|||.|.+..+.+
T Consensus 31 ~~v~i~p~dA~~l-----gI~dGd~V~v~s~~G 58 (112)
T cd02787 31 DVVFMNPDDIARL-----GLKAGDRVDLESAFG 58 (112)
T ss_pred cEEEECHHHHHHh-----CCCCCCEEEEEecCC
Confidence 3588899887766 589999999987653
No 234
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=21.34 E-value=70 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+++.+.|+=.-.++|....|+.||.+.+=
T Consensus 21 e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~ 50 (71)
T PF07883_consen 21 EFFYVLSGEGTLTVDGERVELKPGDAIYIP 50 (71)
T ss_dssp EEEEEEESEEEEEETTEEEEEETTEEEEEE
T ss_pred EEEEEEECCEEEEEccEEeEccCCEEEEEC
Confidence 455666776433367778899999877653
No 235
>PRK10475 23S rRNA pseudouridine synthase F; Provisional
Probab=21.11 E-value=87 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.7
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.|.|||+-+. ..+.|.+||+|.+
T Consensus 32 ~V~VNGk~v~----~~~~V~~gD~V~v 54 (290)
T PRK10475 32 NVFINGKRAT----IGDQVKAGDVVKV 54 (290)
T ss_pred cEEECCEEcc----CCCCcCCCCEEEE
Confidence 4778997542 3567888898876
No 236
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=21.10 E-value=1.5e+02 Score=16.42 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=17.0
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
+++++. ..||++|-+.|.+...
T Consensus 13 ~~~v~~--~~tv~~lk~~i~~~~~ 34 (64)
T smart00213 13 TLEVKP--SDTVSELKEKIAELTG 34 (64)
T ss_pred EEEECC--CCcHHHHHHHHHHHHC
Confidence 345554 8899999999998763
No 237
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=20.88 E-value=1e+02 Score=19.42 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHcCC
Q psy9168 30 TGTIKGLIEWLKLNKLT 46 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~ 46 (96)
..||.++++.|.++|+.
T Consensus 43 ~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 43 KRSLAEIIQELAQRFPA 59 (81)
T ss_pred CCcHHHHHHHHHHHcCC
Confidence 57999999999999976
No 238
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=20.68 E-value=4e+02 Score=22.26 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=40.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceE--EEEcCc--C----------ccccCCcccccCCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGIL--VLINEA--D----------WELYGELTYELKEND 85 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~--VlVNg~--D----------i~~L~GldT~L~dgD 85 (96)
.+.+.++...+..+..|+++|.+..|...+.. +..+|=.|. .-|++- + =....| .|+.||
T Consensus 208 ~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~---~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G---~l~~Gd 281 (460)
T PTZ00327 208 APIIPISAQLKYNIDVVLEYICTQIPIPKRDL---TSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQG---VLKVGD 281 (460)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCC---CCCcEEEEEEEEeecccCCcccCCceEEEEEEEeec---eEecCC
Confidence 35677888888999999999998776543221 122221111 123321 1 023344 589999
Q ss_pred EEEEeec
Q psy9168 86 TIMFIST 92 (96)
Q Consensus 86 ~V~iiP~ 92 (96)
+|.|.|.
T Consensus 282 ~v~i~P~ 288 (460)
T PTZ00327 282 EIEIRPG 288 (460)
T ss_pred EEEEccC
Confidence 9999995
No 239
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=20.51 E-value=1.1e+02 Score=23.09 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=17.3
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+|-.||+-++ .++.|+.||+|.+..
T Consensus 3 ~~~~ng~~~~----~~~~l~~gd~i~~~~ 27 (246)
T cd02558 3 VVDADGEPLD----PDSPYRPGTFVWYYR 27 (246)
T ss_pred eECCCCcCCC----CCceecCCCEEEEeC
Confidence 4556777764 267888888887753
No 240
>PRK04950 ProP expression regulator; Provisional
Probab=20.46 E-value=97 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHcCCCCccceecCCcccc
Q psy9168 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRP 60 (96)
Q Consensus 31 ~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~ 60 (96)
.+..++|++|.+.||. +|...|+.+|
T Consensus 8 ~~~keiia~L~e~fP~----~F~~eg~~kP 33 (213)
T PRK04950 8 TSSKEVIAYLAERFPL----CFSAEGEAKP 33 (213)
T ss_pred CCHHHHHHHHHHhChh----hcCcCCCCcC
Confidence 5789999999999984 6666666666
No 241
>PTZ00062 glutaredoxin; Provisional
Probab=20.35 E-value=1.5e+02 Score=22.19 Aligned_cols=49 Identities=6% Similarity=-0.190 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHcCCCCccceecCCcc--ccceEEEEcCcCccccCCcc
Q psy9168 30 TGTIKGLIEWLKLNKLTERPELFVQGDSV--RPGILVLINEADWELYGELT 78 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~~~~lf~~~g~l--r~~V~VlVNg~Di~~L~Gld 78 (96)
...+.+++..|++.||..+---.+.+-.+ -|.++++-||+-+.-+.|.+
T Consensus 32 C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~r~~G~~ 82 (204)
T PTZ00062 32 YEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLINSLEGCN 82 (204)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEeeeeCCC
Confidence 45899999999999986532222222223 37888999999887777754
No 242
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=20.22 E-value=76 Score=27.12 Aligned_cols=18 Identities=39% Similarity=0.600 Sum_probs=13.2
Q ss_pred CccCCCCCcc-----CCCCceEE
Q psy9168 7 LEKNHTPYFD-----SFPKPTVL 24 (96)
Q Consensus 7 ~~~~~~~~~~-----~~~~~~ve 24 (96)
.|||-||+|+ ....+.|+
T Consensus 254 ~EKNWtPF~~~~~~~~~~d~~I~ 276 (498)
T PF12141_consen 254 TEKNWTPFFDPERESKGSDGHIY 276 (498)
T ss_pred cccCccccCccccccCCCCCEEE
Confidence 5899999999 45555553
No 243
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=1.2e+02 Score=24.73 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCcccc---ceEEEEcCcCccccCCc----------cc-ccCCCCEEEEee
Q psy9168 55 GDSVRP---GILVLINEADWELYGEL----------TY-ELKENDTIMFIS 91 (96)
Q Consensus 55 ~g~lr~---~V~VlVNg~Di~~L~Gl----------dT-~L~dgD~V~iiP 91 (96)
||=.|. +.-|+|||+.....|-. +- .++.||+|.++-
T Consensus 277 DG~pR~~~~~~~Vli~G~r~pivGrVsMD~~~Vdl~~~~~~~~Gd~V~L~G 327 (360)
T COG0787 277 DGYPRALSNGTPVLINGKRVPIVGRVSMDMIMVDLTDLPQVKVGDEVELFG 327 (360)
T ss_pred CCchhhcCCCCEEEECCEEeeEeeEEeeeeEEEECCCCCCCCCCCEEEEEC
Confidence 554443 68899999987776521 22 378899999984
Done!