Query psy9168
Match_columns 96
No_of_seqs 112 out of 417
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 20:37:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgk_A Riken cDNA 2900073H19 p 99.9 3.7E-27 1.3E-31 161.2 6.4 75 22-96 33-108 (114)
2 2k9x_A Tburm1, uncharacterized 99.9 1.2E-26 4E-31 158.1 5.4 77 20-96 22-102 (110)
3 2qjl_A URM1, ubiquitin-related 99.9 3.5E-23 1.2E-27 136.6 8.3 77 20-96 19-99 (99)
4 3dwg_C 9.5 kDa culture filtrat 99.9 7.4E-22 2.5E-26 128.0 7.2 74 20-96 18-93 (93)
5 3po0_A Small archaeal modifier 99.8 7.6E-20 2.6E-24 117.4 6.8 74 19-96 16-89 (89)
6 2g1e_A Hypothetical protein TA 99.8 1.4E-19 4.8E-24 115.6 6.9 75 19-96 15-90 (90)
7 2l52_A Methanosarcina acetivor 99.8 9.1E-19 3.1E-23 115.6 8.2 74 19-96 19-99 (99)
8 1vjk_A Molybdopterin convertin 99.8 2.3E-18 7.7E-23 113.1 7.4 70 21-96 29-98 (98)
9 1v8c_A MOAD related protein; r 99.6 4.3E-16 1.5E-20 112.1 5.7 74 19-96 14-87 (168)
10 3rpf_C Molybdopterin convertin 99.6 6.4E-15 2.2E-19 92.2 6.9 68 14-96 7-74 (74)
11 1fm0_D Molybdopterin convertin 99.5 1.9E-14 6.4E-19 90.2 4.6 67 19-96 15-81 (81)
12 2q5w_D Molybdopterin convertin 99.4 5.1E-13 1.7E-17 83.0 6.1 64 19-96 14-77 (77)
13 2cu3_A Unknown function protei 99.3 1.2E-12 4E-17 80.0 4.9 59 20-96 6-64 (64)
14 1f0z_A THis protein; ubiquitin 99.3 4.9E-13 1.7E-17 82.0 2.8 60 20-96 7-66 (66)
15 1tyg_B YJBS; alpha beta barrel 99.1 3.1E-11 1.1E-15 78.9 4.3 60 20-96 27-87 (87)
16 1rws_A Hypothetical protein PF 99.0 1.1E-10 3.9E-15 73.5 0.9 56 20-96 22-77 (77)
17 1ryj_A Unknown; beta/alpha pro 98.9 2.8E-09 9.6E-14 66.0 6.4 55 21-96 16-70 (70)
18 2kl0_A Putative thiamin biosyn 98.7 9.9E-09 3.4E-13 64.6 4.2 58 21-96 8-65 (73)
19 2k5p_A THis protein, thiamine- 98.7 8E-09 2.7E-13 65.8 2.7 62 21-96 8-69 (78)
20 2l32_A Small archaeal modifier 98.1 5.5E-06 1.9E-10 52.0 5.3 56 19-96 11-66 (74)
21 2hj1_A Hypothetical protein; s 98.0 1E-05 3.5E-10 53.6 6.1 54 24-93 31-86 (97)
22 2kmm_A Guanosine-3',5'-BIS(dip 97.1 0.00094 3.2E-08 40.0 4.6 56 21-95 11-66 (73)
23 3hvz_A Uncharacterized protein 96.2 0.0072 2.5E-07 38.1 4.6 53 21-92 16-68 (78)
24 2eki_A DRG 1, developmentally- 95.4 0.06 2.1E-06 35.3 6.7 71 5-94 15-89 (93)
25 3a9j_A Ubiquitin; protein comp 92.6 0.67 2.3E-05 26.6 6.7 64 21-96 11-76 (76)
26 1ndd_A NEDD8, protein (ubiquit 92.4 0.9 3.1E-05 26.1 7.5 65 20-96 10-76 (76)
27 3dbh_I NEDD8; cell cycle, acti 91.7 0.42 1.4E-05 28.6 5.2 67 18-96 20-88 (88)
28 3mtn_B UBA80, ubcep1, ubiquiti 91.6 0.46 1.6E-05 28.1 5.2 64 21-96 14-79 (85)
29 3n3k_B Ubiquitin; hydrolase, p 90.5 0.54 1.8E-05 27.9 4.8 64 21-96 14-79 (85)
30 1sif_A Ubiquitin; hydrophobic 90.1 0.97 3.3E-05 27.7 5.8 68 17-96 16-85 (88)
31 3va4_A Mediator of DNA damage 89.3 0.26 8.9E-06 33.2 2.9 26 64-89 91-116 (132)
32 2io0_B Small ubiquitin-related 88.9 2 6.7E-05 27.2 6.7 64 19-96 14-81 (91)
33 4hcn_B Polyubiquitin, ubiquiti 88.8 0.87 3E-05 28.4 5.0 67 18-96 30-98 (98)
34 3k9o_B Ubiquitin, UBB+1; E2-25 88.6 0.93 3.2E-05 27.7 4.9 64 21-96 12-77 (96)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 88.3 1.8 6.1E-05 25.8 6.0 65 20-96 17-83 (87)
36 4fbj_B NEDD8; effector-HOST ta 87.6 1.2 4E-05 27.3 4.9 66 19-96 9-76 (88)
37 1yx5_B Ubiquitin; proteasome, 87.1 3 0.0001 25.7 6.7 64 21-96 11-76 (98)
38 3fm8_A Kinesin-like protein KI 86.7 0.36 1.2E-05 32.4 2.2 23 63-89 91-113 (124)
39 2l7r_A Ubiquitin-like protein 86.3 1.2 4.3E-05 27.5 4.5 64 21-96 28-93 (93)
40 1wwt_A Threonyl-tRNA synthetas 86.3 0.81 2.8E-05 28.0 3.6 53 21-91 20-72 (88)
41 2ojr_A Ubiquitin; lanthide-bin 86.1 3.1 0.00011 26.5 6.6 65 20-96 45-111 (111)
42 2d07_B Ubiquitin-like protein 86.0 3.3 0.00011 26.0 6.5 64 19-96 26-93 (93)
43 4ejq_A Kinesin-like protein KI 85.2 0.48 1.6E-05 32.6 2.3 22 64-89 112-133 (154)
44 1wln_A Afadin; beta sandwich, 85.1 0.58 2E-05 30.5 2.6 25 63-91 81-105 (120)
45 2bs2_B Quinol-fumarate reducta 84.9 5.5 0.00019 28.3 8.0 76 3-91 10-93 (241)
46 2uyz_B Small ubiquitin-related 84.9 0.65 2.2E-05 27.4 2.6 64 20-96 13-79 (79)
47 1tke_A Threonyl-tRNA synthetas 84.3 1.2 4.1E-05 31.8 4.2 52 21-91 10-61 (224)
48 2io1_B Small ubiquitin-related 84.1 3.9 0.00013 25.8 6.2 67 19-96 16-83 (94)
49 1wz0_A Ubiquitin-like protein 83.8 3.5 0.00012 26.7 6.0 64 19-96 33-100 (104)
50 1wyw_B Ubiquitin-like protein 82.7 1.2 4.1E-05 27.8 3.3 65 19-96 30-97 (97)
51 1wy8_A NP95-like ring finger p 82.6 2.5 8.6E-05 25.3 4.7 64 21-96 19-85 (89)
52 1uel_A HHR23B, UV excision rep 82.5 5 0.00017 24.7 6.1 60 20-91 10-74 (95)
53 3goe_A DNA repair protein RAD6 82.2 1.7 5.9E-05 27.9 3.8 64 17-90 16-80 (82)
54 2hj8_A Interferon-induced 17 k 81.9 1.7 5.7E-05 26.5 3.7 64 21-96 15-80 (88)
55 2h88_B Succinate dehydrogenase 81.7 3.7 0.00013 29.7 6.1 76 3-91 17-101 (252)
56 3vdz_A Ubiquitin-40S ribosomal 81.3 2.9 9.9E-05 26.8 4.8 66 19-96 44-111 (111)
57 2kdi_A Ubiquitin, vacuolar pro 80.9 5.7 0.0002 25.5 6.2 69 16-96 15-85 (114)
58 3kwl_A Uncharacterized protein 80.8 0.77 2.6E-05 37.2 2.2 68 3-92 30-102 (514)
59 3b08_A Polyubiquitin-C, ubiqui 80.4 4.9 0.00017 25.9 5.8 65 20-96 86-152 (152)
60 2k8h_A Small ubiquitin protein 80.3 3.7 0.00013 26.9 5.1 63 20-96 36-102 (110)
61 4egx_A Kinesin-like protein KI 80.2 0.92 3.1E-05 32.2 2.3 25 61-89 139-163 (184)
62 4h87_A Kanadaptin; FHA domain 79.6 1.2 4E-05 29.8 2.5 24 64-89 96-119 (130)
63 2eke_C Ubiquitin-like protein 79.5 5.1 0.00018 26.1 5.6 64 19-96 39-106 (106)
64 1v5o_A 1700011N24RIK protein; 78.7 6.4 0.00022 24.6 5.8 65 21-96 22-88 (102)
65 3po8_A RV0020C protein, putati 77.8 0.93 3.2E-05 28.4 1.5 21 64-89 67-87 (100)
66 1lgp_A Cell cycle checkpoint p 77.6 0.92 3.2E-05 29.1 1.5 27 64-92 70-96 (116)
67 1wgd_A Homocysteine-responsive 77.1 3 0.0001 25.5 3.7 63 22-96 21-89 (93)
68 2bps_A YUKD protein; ubiquitin 76.8 6.1 0.00021 24.8 5.1 63 19-90 15-81 (81)
69 1wm3_A Ubiquitin-like protein 76.6 9.2 0.00031 22.5 6.1 58 19-90 10-71 (72)
70 1gxc_A CHK2, CDS1, serine/thre 76.4 1.3 4.5E-05 29.9 2.0 26 64-91 105-130 (149)
71 3phx_B Ubiquitin-like protein 76.4 5.9 0.0002 23.0 4.8 64 20-95 14-79 (79)
72 1uht_A Expressed protein; FHA 76.0 1.2 4.1E-05 28.7 1.7 25 64-90 78-102 (118)
73 2wyq_A HHR23A, UV excision rep 75.8 3.9 0.00013 24.1 3.9 59 21-91 16-79 (85)
74 2xt9_B Putative signal transdu 75.6 1.5 5.1E-05 28.2 2.1 21 64-89 75-95 (115)
75 1we6_A Splicing factor, putati 75.5 8 0.00027 24.4 5.6 64 21-96 41-107 (111)
76 3hx1_A SLR1951 protein; P74513 75.2 1.1 3.9E-05 29.8 1.5 22 64-90 84-105 (131)
77 3vr8_B Iron-sulfur subunit of 74.8 4.1 0.00014 30.8 4.6 80 3-91 41-125 (282)
78 3q3f_A Ribonuclease/ubiquitin 73.9 6.4 0.00022 28.1 5.2 67 18-96 113-181 (189)
79 2jqj_A DNA damage response pro 73.8 1.6 5.5E-05 29.5 1.9 25 64-91 89-113 (151)
80 1j8c_A Ubiquitin-like protein 73.5 11 0.00037 24.7 6.0 65 20-96 41-107 (125)
81 4a9a_A Ribosome-interacting GT 73.2 3.7 0.00013 32.0 4.2 30 62-91 343-375 (376)
82 2kan_A Uncharacterized protein 72.9 12 0.00041 23.1 5.8 63 22-96 26-91 (94)
83 3v6c_B Ubiquitin; structural g 72.7 7.3 0.00025 23.5 4.7 62 18-91 25-88 (91)
84 1we7_A SF3A1 protein; structur 72.6 11 0.00038 23.9 5.8 65 20-96 45-111 (115)
85 3l0w_B Monoubiquitinated proli 71.9 8 0.00027 26.6 5.3 64 21-96 11-76 (169)
86 1wjn_A Tubulin-folding protein 71.5 15 0.00051 22.5 6.8 63 23-91 27-91 (97)
87 2kfu_A RV1827 PThr 22; FHA dom 71.1 2.6 8.8E-05 29.3 2.5 21 64-89 119-139 (162)
88 2pie_A E3 ubiquitin-protein li 70.6 3.8 0.00013 27.2 3.2 29 64-94 77-105 (138)
89 2pmv_A Gastric intrinsic facto 70.4 12 0.00042 29.8 6.6 76 14-90 306-395 (399)
90 3rt3_B Ubiquitin-like protein 70.4 7.8 0.00027 25.6 4.8 65 20-96 91-157 (159)
91 3gqs_A Adenylate cyclase-like 70.1 1.5 5E-05 27.8 1.0 22 64-89 71-92 (106)
92 3u30_A Ubiquitin, linear DI-ub 69.8 6.3 0.00021 26.6 4.2 68 17-96 103-172 (172)
93 3a4r_A Nfatc2-interacting prot 69.5 16 0.00053 22.0 6.5 55 22-90 20-78 (79)
94 3m62_B UV excision repair prot 69.3 11 0.00038 23.7 5.1 61 18-90 9-71 (106)
95 3oun_A Putative uncharacterize 69.2 1.9 6.6E-05 30.1 1.5 21 64-89 129-149 (157)
96 3pge_A SUMO-modified prolifera 68.8 16 0.00056 26.3 6.5 64 19-96 37-104 (200)
97 1wx8_A Riken cDNA 4931431F19; 68.8 5 0.00017 24.5 3.3 65 20-96 26-92 (96)
98 2pjh_A Protein NPL4, nuclear p 68.8 5.4 0.00018 24.4 3.4 62 21-91 16-79 (80)
99 3tix_A Ubiquitin-like protein 68.1 10 0.00036 27.9 5.3 64 19-96 65-132 (207)
100 2csw_A Ubiquitin ligase protei 67.9 3.7 0.00013 27.5 2.7 27 64-92 85-111 (145)
101 2kb3_A Oxoglutarate dehydrogen 67.8 1.7 5.8E-05 29.5 1.0 21 64-89 110-130 (143)
102 3b08_A Polyubiquitin-C, ubiqui 67.0 22 0.00075 22.7 6.4 64 21-96 11-76 (152)
103 1g6g_A Protein kinase RAD53; b 66.2 3 0.0001 27.3 1.9 28 64-93 81-108 (127)
104 2jxx_A Nfatc2-interacting prot 66.2 20 0.00068 22.9 5.9 55 22-90 38-96 (97)
105 1dmz_A Protein (protein kinase 66.0 1.8 6.2E-05 29.6 0.9 25 64-90 85-109 (158)
106 1r21_A Antigen KI-67; beta san 66.0 1.6 5.5E-05 28.5 0.6 22 64-89 77-98 (128)
107 2k6p_A Uncharacterized protein 65.9 3.4 0.00012 25.3 2.1 23 64-90 28-50 (92)
108 1g3g_A Protien kinase SPK1; FH 65.5 3.5 0.00012 28.3 2.2 27 64-92 109-135 (164)
109 3kyd_D Small ubiquitin-related 64.4 25 0.00084 23.3 6.2 59 20-92 50-112 (115)
110 3kt9_A Aprataxin; FHA domain, 64.2 2.8 9.5E-05 27.4 1.4 28 64-93 66-93 (102)
111 2bb6_A TCII, TC II, transcobal 63.7 15 0.00053 29.3 6.0 64 20-89 331-409 (414)
112 1qu5_A Protein kinase SPK1; FH 63.7 2 6.9E-05 30.3 0.7 25 64-90 109-133 (182)
113 1wx7_A Ubiquilin 3; ubiquitin- 61.8 26 0.00088 21.7 6.3 61 22-96 30-92 (106)
114 2bwf_A Ubiquitin-like protein 61.2 20 0.00069 20.3 6.2 60 21-92 14-75 (77)
115 1mzk_A Kinase associated prote 61.1 2.7 9.1E-05 28.0 0.9 26 64-89 78-109 (139)
116 3u30_A Ubiquitin, linear DI-ub 60.6 14 0.00048 24.8 4.6 67 18-96 28-96 (172)
117 1yqb_A Ubiquilin 3; structural 60.3 13 0.00043 23.2 4.1 61 22-96 35-97 (100)
118 1dm9_A Hypothetical 15.5 KD pr 59.8 6.3 0.00022 26.4 2.7 23 64-90 36-58 (133)
119 3u5e_m 60S ribosomal protein L 59.2 2 6.7E-05 28.2 0.0 63 22-96 12-76 (128)
120 1wgr_A Growth factor receptor- 56.5 7.1 0.00024 25.5 2.4 29 14-44 15-43 (100)
121 2kk8_A Uncharacterized protein 56.3 8.2 0.00028 23.4 2.6 64 16-90 16-81 (84)
122 3m63_B Ubiquitin domain-contai 56.2 9.9 0.00034 23.8 3.0 60 19-90 36-97 (101)
123 2kd0_A LRR repeats and ubiquit 55.7 13 0.00044 22.4 3.4 62 18-91 19-82 (85)
124 2brf_A Bifunctional polynucleo 55.7 5.7 0.00019 26.3 1.8 27 64-92 72-98 (110)
125 3jxo_A TRKA-N domain protein; 55.7 12 0.00041 22.0 3.2 27 64-92 46-72 (86)
126 1c05_A Ribosomal protein S4 de 55.6 9.9 0.00034 26.1 3.1 27 64-93 78-104 (159)
127 1wgg_A Ubiquitin carboxyl-term 55.0 23 0.00079 21.9 4.6 54 23-91 22-77 (96)
128 3els_A PRE-mRNA leakage protei 54.6 3.9 0.00013 28.2 0.9 26 64-91 119-144 (158)
129 2jpe_A Nuclear inhibitor of pr 54.3 2.3 7.8E-05 28.3 -0.3 24 64-89 102-125 (140)
130 2dzj_A Synaptic glycoprotein S 54.2 22 0.00074 21.8 4.3 53 24-89 29-85 (88)
131 1v5t_A 8430435I17RIK protein; 53.9 34 0.0012 20.6 5.2 63 19-92 15-82 (90)
132 3u5c_f 40S ribosomal protein S 53.7 2.7 9.4E-05 28.9 0.0 63 22-96 12-76 (152)
133 1wia_A Hypothetical ubiquitin- 53.6 11 0.00037 22.9 2.8 61 20-92 17-77 (95)
134 2dzi_A Ubiquitin-like protein 52.0 31 0.0011 19.6 5.1 59 21-91 18-78 (81)
135 2vqe_D 30S ribosomal protein S 52.0 9.5 0.00032 27.5 2.7 25 64-91 126-150 (209)
136 2l76_A Nfatc2-interacting prot 51.5 46 0.0016 21.5 5.7 59 20-92 30-92 (95)
137 2ff4_A Probable regulatory pro 50.1 6.5 0.00022 29.9 1.6 22 64-89 350-371 (388)
138 1oqy_A HHR23A, UV excision rep 48.9 47 0.0016 25.8 6.4 63 17-91 14-82 (368)
139 1v2y_A 3300001G02RIK protein; 48.7 17 0.00056 23.5 3.2 68 17-95 14-98 (105)
140 3elv_A PRE-mRNA leakage protei 48.6 6.6 0.00023 28.6 1.4 26 64-91 166-191 (205)
141 1wxq_A GTP-binding protein; st 48.5 7.5 0.00026 30.1 1.8 55 21-92 341-395 (397)
142 1kf6_B Fumarate reductase iron 47.4 54 0.0018 23.0 6.1 74 2-84 10-84 (243)
143 1jal_A YCHF protein; nucleotid 46.4 8 0.00027 30.0 1.6 16 74-89 344-359 (363)
144 2exd_A NFED short homolog; mem 45.7 26 0.0009 21.4 3.7 32 58-91 27-58 (80)
145 3u7z_A Putative metal binding 45.1 20 0.00067 23.3 3.1 61 28-90 27-96 (101)
146 1p9k_A ORF, hypothetical prote 45.1 9.8 0.00034 22.7 1.6 23 64-89 48-70 (79)
147 4a20_A Ubiquitin-like protein 44.6 24 0.00082 22.2 3.5 58 22-91 33-94 (98)
148 4dbg_A Ranbp-type and C3HC4-ty 44.4 62 0.0021 20.9 5.7 65 14-90 28-97 (105)
149 2dby_A GTP-binding protein; GD 43.9 7.5 0.00026 30.0 1.1 16 74-89 349-364 (368)
150 2akk_A RP4479, PHNA-like prote 43.6 12 0.0004 23.5 1.8 17 75-91 7-23 (74)
151 4a6q_A Histone deacetylase com 43.5 22 0.00076 24.7 3.4 76 16-93 49-141 (143)
152 2ohf_A Protein OLA1, GTP-bindi 42.8 9.8 0.00033 29.9 1.6 20 74-93 370-389 (396)
153 1v86_A DNA segment, CHR 7, way 42.0 36 0.0012 20.8 4.0 59 20-91 26-86 (95)
154 2k5h_A Conserved protein; stru 41.2 20 0.0007 22.8 2.7 28 62-91 57-84 (101)
155 4gdk_A Ubiquitin-like protein 41.0 65 0.0022 20.2 5.6 25 18-44 19-43 (91)
156 1wv3_A Similar to DNA segregat 40.8 13 0.00044 27.0 1.9 22 64-89 137-159 (238)
157 3w1s_C Ubiquitin-like protein 40.6 48 0.0016 21.0 4.4 37 18-69 22-58 (91)
158 4ar0_A Type IV pilus biogenesi 39.1 42 0.0014 22.1 4.1 69 18-92 29-104 (128)
159 3b1l_X E3 ubiquitin-protein li 45.0 6.5 0.00022 22.6 0.0 61 23-95 13-75 (76)
160 3rt3_B Ubiquitin-like protein 38.7 79 0.0027 20.5 6.6 64 18-92 10-76 (159)
161 4dwf_A HLA-B-associated transc 38.4 35 0.0012 20.1 3.4 61 21-94 16-78 (90)
162 2wdq_B Succinate dehydrogenase 38.2 32 0.0011 24.1 3.6 59 3-71 8-72 (238)
163 3mub_A Alanine racemase; alpha 38.0 23 0.00078 27.1 3.0 30 63-92 294-332 (367)
164 1ni3_A YCHF GTPase, YCHF GTP-b 38.0 8.8 0.0003 30.0 0.7 16 74-89 372-387 (392)
165 3sjy_A Translation initiation 38.0 65 0.0022 24.3 5.6 27 21-47 167-193 (403)
166 3plu_A Ubiquitin-like modifier 37.6 71 0.0024 20.3 4.9 60 19-90 30-91 (93)
167 2v31_A Ubiquitin-activating en 37.4 39 0.0013 22.1 3.7 40 51-90 8-51 (112)
168 3bbn_D Ribosomal protein S4; s 37.3 19 0.00064 26.0 2.3 25 64-91 116-140 (201)
169 2fl8_A Baseplate structural pr 36.6 22 0.00076 30.0 2.9 33 59-95 218-250 (602)
170 2klc_A Ubiquilin-1; ubiquitin- 36.3 74 0.0025 19.5 7.1 63 20-94 34-98 (101)
171 3v7o_A Minor nucleoprotein VP3 35.2 8.5 0.00029 28.8 0.2 63 20-96 30-96 (227)
172 1ksk_A Ribosomal small subunit 35.1 18 0.00063 25.5 1.9 24 64-90 30-53 (234)
173 1yj5_C 5' polynucleotide kinas 34.8 15 0.00051 25.5 1.4 29 64-94 72-100 (143)
174 3ec0_A Protease; HIV-2, inhibi 34.6 22 0.00075 23.0 2.1 27 59-85 8-37 (99)
175 3soe_A Membrane-associated gua 34.3 15 0.00053 23.9 1.3 36 55-90 47-88 (113)
176 2hs1_A HIV-1 protease; ultra-h 33.9 21 0.00072 23.0 1.9 25 59-83 8-35 (99)
177 2k14_A YUAF protein; NFED-like 33.8 37 0.0013 20.5 2.9 29 63-91 38-70 (84)
178 3cp0_A Membrane protein implic 33.3 30 0.001 20.6 2.5 30 62-91 40-70 (82)
179 1y8x_B Ubiquitin-activating en 32.8 29 0.001 22.3 2.5 22 21-44 7-28 (98)
180 2faz_A Ubiquitin-like containi 32.4 70 0.0024 18.0 4.8 53 28-92 22-76 (78)
181 3e5p_A Alanine racemase; ALR, 32.0 23 0.00078 27.2 2.1 30 63-92 298-336 (371)
182 1ttn_A DC-UBP, dendritic cell- 31.2 38 0.0013 21.0 2.8 60 20-91 33-94 (106)
183 3hur_A Alanine racemase; struc 30.9 33 0.0011 26.7 2.9 30 62-92 301-340 (395)
184 1vio_A Ribosomal small subunit 30.8 23 0.0008 25.2 1.9 24 64-90 29-52 (243)
185 3h9d_A ATG8, microtubule-assoc 30.5 1.1E+02 0.0037 20.1 5.1 25 18-44 47-71 (119)
186 3tla_A MCCF; serine protease, 30.0 27 0.00091 27.1 2.2 16 80-95 39-54 (371)
187 3rui_B Autophagy-related prote 28.9 1.1E+02 0.0036 20.1 4.8 25 18-44 46-70 (118)
188 4a3q_A Alanine racemase 1; iso 28.9 38 0.0013 26.1 2.9 31 62-92 295-334 (382)
189 3dh3_A Ribosomal large subunit 28.3 27 0.00093 26.1 1.9 23 64-90 33-55 (290)
190 1kk1_A EIF2gamma; initiation o 27.9 1.2E+02 0.0041 22.8 5.6 27 21-47 175-201 (410)
191 1wz3_A Autophagy 12B, ATG12B, 27.7 91 0.0031 19.7 4.2 25 18-44 27-51 (96)
192 1cl8_A Protein (endonuclease); 27.6 89 0.003 23.8 4.6 34 30-63 59-94 (276)
193 3m95_A Autophagy related prote 27.3 1.2E+02 0.004 20.2 4.8 24 19-44 53-76 (125)
194 3ix6_A TS, tsase, thymidylate 27.0 13 0.00045 29.2 0.0 62 21-96 31-96 (360)
195 3slz_A GAG-Pro-POL polyprotein 26.9 34 0.0012 23.1 2.0 28 57-84 20-50 (132)
196 1wju_A NEDD8 ultimate buster-1 26.2 1.2E+02 0.004 19.3 4.5 55 22-90 33-89 (100)
197 1uh6_A Ubiquitin-like 5; beta- 26.1 95 0.0032 19.8 4.1 58 21-90 39-98 (100)
198 4eew_A Large proline-rich prot 26.1 59 0.002 18.9 2.9 26 20-45 27-52 (88)
199 3ivf_A Talin-1; FERM domain, c 26.0 1.2E+02 0.0043 22.5 5.3 64 20-91 14-83 (371)
200 3kw3_A Alanine racemase; niaid 25.3 50 0.0017 25.3 3.0 32 60-91 301-344 (376)
201 2arc_A ARAC, arabinose operon 24.8 39 0.0013 21.1 2.0 30 62-91 41-70 (164)
202 1xgs_A Methionine aminopeptida 24.2 1.2E+02 0.0042 22.1 4.9 54 29-89 26-81 (295)
203 4ecl_A Serine racemase, vantg; 24.0 51 0.0017 25.1 2.8 33 60-92 294-338 (374)
204 3l4b_C TRKA K+ channel protien 23.9 59 0.002 21.9 2.9 25 66-92 180-204 (218)
205 3r8n_D 30S ribosomal protein S 23.7 9.6 0.00033 27.7 -1.3 25 63-90 121-145 (205)
206 1v70_A Probable antibiotics sy 23.5 62 0.0021 18.3 2.6 29 62-90 52-80 (105)
207 3kmh_A D-lyxose isomerase; cup 23.5 76 0.0026 23.9 3.6 35 59-93 154-188 (246)
208 1s0u_A EIF-2-gamma, translatio 23.4 1.7E+02 0.0059 21.9 5.7 27 21-47 173-199 (408)
209 2vsp_A PDZ domain-containing p 23.4 27 0.00092 20.6 0.9 32 58-89 45-80 (91)
210 2akl_A PHNA-like protein PA012 23.3 43 0.0015 23.2 2.0 18 74-91 70-87 (138)
211 2xzm_9 RPS31E; ribosome, trans 22.6 18 0.00062 25.9 0.0 24 21-44 11-34 (189)
212 3ddc_B RAS association domain- 22.5 1.1E+02 0.0038 21.6 4.1 24 20-45 88-111 (163)
213 1eo6_A GATE-16, golgi-associat 22.4 1.5E+02 0.0053 19.1 4.6 24 19-44 45-68 (117)
214 1vct_A Hypothetical protein PH 22.4 82 0.0028 21.8 3.4 19 74-92 164-182 (205)
215 2opk_A Hypothetical protein; p 22.2 52 0.0018 20.3 2.2 30 61-90 55-86 (112)
216 3g2b_A Coenzyme PQQ synthesis 22.1 47 0.0016 20.8 1.9 18 30-47 55-72 (95)
217 2iaa_C Azurin; quinoprotein, t 21.9 25 0.00086 23.2 0.6 20 2-21 95-116 (128)
218 1oey_A P67-PHOX, neutrophil cy 21.8 1.5E+02 0.0052 18.4 4.6 49 22-72 15-65 (83)
219 2hah_A Protease, retropepsin; 21.3 23 0.00078 23.5 0.3 24 59-83 14-40 (116)
220 2r2q_A Gamma-aminobutyric acid 21.0 1.7E+02 0.0058 18.6 5.0 23 20-44 45-67 (110)
221 1pqs_A Cell division control p 21.0 93 0.0032 19.0 3.1 45 23-73 6-59 (77)
222 2gu9_A Tetracenomycin polyketi 20.8 60 0.002 18.9 2.1 30 61-90 46-75 (113)
223 1qf6_A THRRS, threonyl-tRNA sy 20.7 65 0.0022 26.5 3.0 52 21-91 10-61 (642)
224 4i4a_A Similar to unknown prot 20.7 52 0.0018 20.1 1.9 31 61-91 56-86 (128)
225 1ug1_A KIAA1010 protein; struc 20.6 76 0.0026 20.5 2.7 19 74-92 29-47 (92)
226 1d2z_A Death domain of pelle; 20.6 55 0.0019 21.3 2.0 13 30-42 74-86 (108)
227 1o5u_A Novel thermotoga mariti 20.1 47 0.0016 20.6 1.6 31 61-91 51-82 (101)
No 1
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=99.94 E-value=3.7e-27 Score=161.16 Aligned_cols=75 Identities=63% Similarity=1.083 Sum_probs=68.9
Q ss_pred eEEecCC-CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSY-LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~-~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+|+++.. .++||++||++|+++||+.++++|+++|++||+|+|||||+||++++|++|+|+|||+|+||||+|||
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEECSCCC
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCCCCCC
Confidence 3666621 24799999999999999999999999999999999999999999999999999999999999999998
No 2
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=99.93 E-value=1.2e-26 Score=158.11 Aligned_cols=77 Identities=43% Similarity=0.770 Sum_probs=69.8
Q ss_pred CceEEecCC--CCCCHHHHHHHHHHHcCCCCccceecCC--ccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 20 KPTVLFSSY--LTGTIKGLIEWLKLNKLTERPELFVQGD--SVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 20 ~~~ve~~~~--~g~TV~dLL~~L~~~~~~~~~~lf~~~g--~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+++++++.. .++||++||++|+++|++.++++|+++| ++||+|+|||||+||++++|++|+|+|||+|+||||+||
T Consensus 22 ~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fistlhg 101 (110)
T 2k9x_A 22 QTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTLHG 101 (110)
T ss_dssp CSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEECCCC
T ss_pred eEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCCCcc
Confidence 455666631 3469999999999999999999999888 899999999999999999999999999999999999999
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 102 ~ 102 (110)
T 2k9x_A 102 G 102 (110)
T ss_dssp C
T ss_pred c
Confidence 8
No 3
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=99.89 E-value=3.5e-23 Score=136.57 Aligned_cols=77 Identities=39% Similarity=0.670 Sum_probs=69.0
Q ss_pred CceEEecCC--CCCCHHHHHHHHHHHcCCCCccc--eecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 20 KPTVLFSSY--LTGTIKGLIEWLKLNKLTERPEL--FVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 20 ~~~ve~~~~--~g~TV~dLL~~L~~~~~~~~~~l--f~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+++++++.. .++||++|++.|.++||+.++++ |.++|++|++++|+||+++|+++++++|+|++||+|+||||+||
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEECTTC
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEECCCCC
Confidence 555555322 47999999999999998877778 88889999999999999999999999999999999999999999
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 8
No 4
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=99.86 E-value=7.4e-22 Score=127.97 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceec--CCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~--~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++. .++||++|++.|.++||..++.++++ +|++|++++|+|||++|++++|.+|+|++||+|+||||++||
T Consensus 18 ~~~~~~---~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 18 QKSVSA---SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp CSEEEE---CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEECCTTC
T ss_pred CeEEec---CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECCCCCC
Confidence 355663 37999999999999999888889876 799999999999999999999999999999999999999998
No 5
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=99.80 E-value=7.6e-20 Score=117.44 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+++...++||++|++.|..+||+.+..+|+++|++|++++|+|||+.++. +|+|++||+|+||||++||
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT----TSBCCTTCEEEEECCCSCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC----CcccCCCCEEEEECCCCCC
Confidence 4455555555589999999999999998887899888999999999999999974 8999999999999999998
No 6
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=99.79 E-value=1.4e-19 Score=115.60 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=69.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCcc-ceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPE-LFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~-lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++++. +.||++|++.|..+||+.++. +|+++| +++.+.|+|||+.++.+++.+|+|++||+|.||||++||
T Consensus 15 g~~~~~~~~--~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 15 KKKEETFNG--ISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp TCSEEEESS--CCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECCTTCC
T ss_pred CCCEEEcCC--CCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccCCCCcCCCCCCEEEEeCCCCCC
Confidence 467778875 799999999999999887777 888888 999999999999999999999999999999999999998
No 7
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=99.77 E-value=9.1e-19 Score=115.64 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=68.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccce-------EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGI-------LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V-------~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+++++++ +.||+||++.|..+||+.++.++ ++|++++.+ +|+|||+.++++++.+|+|++||+|.|+|
T Consensus 19 g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 19 GTPELPLS---GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp SSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred CCCeEEEe---CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 45677776 58999999999999998888888 778899999 99999999999999999999999999999
Q ss_pred ccCCC
Q psy9168 92 TLHGG 96 (96)
Q Consensus 92 ~vaGG 96 (96)
|++||
T Consensus 95 pv~GG 99 (99)
T 2l52_A 95 PVSGG 99 (99)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 99998
No 8
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=99.75 E-value=2.3e-18 Score=113.08 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=60.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++. ++||++|++.|..+||+.++.+|+++|++++.++|+|||+.+. .+|+|++||+|+||||++||
T Consensus 29 ~~~e~~~--~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~----~~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 29 EEIELPE--GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----WDEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp EEEEECT--TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----TTCBCCTTCEEEEESCC---
T ss_pred EEEECCC--CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC----CCCCCCCCCEEEEECCCCCC
Confidence 3445544 8999999999999999999999999999999999999999996 48999999999999999998
No 9
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=99.62 E-value=4.3e-16 Score=112.05 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=66.5
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++++. .||++|++.|..+||..+..++++ +.+++.++|+|||+.+..+++.+|+|++||+|.||||++||
T Consensus 14 G~~~~ev~~---~TV~dLl~~L~~~~p~l~~~l~~~-~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 14 GKSQLELPG---ATVGEVLENLVRAYPALKEELFEG-EGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp TCSEEECCC---SBHHHHHHHHHHHCGGGHHHHEET-TEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECSCCSE
T ss_pred CCCeEEECC---CcHHHHHHHHHhhChhhhhhhhcc-cccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECccccc
Confidence 457777762 899999999999999888888854 45999999999999999999999999999999999999998
No 10
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=99.57 E-value=6.4e-15 Score=92.20 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=54.9
Q ss_pred CccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 14 YFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 14 ~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
||-.+..+++++ . ++||++|++.|..+ ++.++. ...+.|+||++.+. +.+|+|++||+|+||||+
T Consensus 7 ~fa~l~~~~~e~-~--~~tv~~ll~~L~~~-~~l~~~--------l~~~~vavN~~~v~---~~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 7 FFGPIKEENFFI-K--ANDLKELRAILQEK-EGLKEW--------LGVCAIALNDHLID---NLNTPLKDGDVISLLPPV 71 (74)
T ss_dssp ECTTCCCCCEEE-E--CSSHHHHHHHHHTC-TTTTTT--------TTTCEEEESSSEEC---CTTCCCCTTCEEEEECCB
T ss_pred EEeecceeEEee-C--CCcHHHHHHHHHHC-cCHHHH--------hhccEEEECCEEcC---CCCcCCCCCCEEEEECCC
Confidence 566665577887 4 79999999999975 444332 24799999999874 579999999999999999
Q ss_pred CCC
Q psy9168 94 HGG 96 (96)
Q Consensus 94 aGG 96 (96)
+||
T Consensus 72 sGG 74 (74)
T 3rpf_C 72 CGG 74 (74)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 11
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=99.49 E-value=1.9e-14 Score=90.20 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++++ ..+.||++|++.|..+||..++.+ +.+ .+.|+|||+.+. .+|+|++||+|.||||++||
T Consensus 15 g~~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l--~~~----~~~v~vN~~~v~----~~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 15 GTDATEVA-ADFPTVEALRQHMAAQSDRWALAL--EDG----KLLAAVNQTLVS----FDHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp TCSEEEEC-SCCSBHHHHHHHHHTTCHHHHHHH--CCT----TCEEEETTEECC----TTCBCCTTCEEEEECCCCCC
T ss_pred CCCeEEEc-CCCCCHHHHHHHHHHHChhHHHHh--cCC----CEEEEECCEECC----CCCCCCCCCEEEEeCCCCCC
Confidence 45677776 568999999999999998665444 222 468999999874 58999999999999999998
No 12
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=99.40 E-value=5.1e-13 Score=83.05 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+++...++||++|++.|..+||+.. .+ .+.|+|||+.+.. +|+|++||+|.|+||++||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~p~~~--------~v--~~~v~vNg~~v~~----~~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 14 QKAQEDIVLEQALTVQQFEDLLFERYPQIN--------NK--KFQVAVNEEFVQK----SDFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp TCSEEECCCSSCEEHHHHHHHHHHHCGGGT--------TC--CCEEEETTEEECT----TSEECTTCEEEEECSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCcchh--------cc--eEEEEECCEECCC----CCCcCCCCEEEEECCCCCC
Confidence 445555554458999999999999997431 12 3589999998863 6999999999999999998
No 13
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=99.34 E-value=1.2e-12 Score=80.00 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=49.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++++ . ++||.+|++.|.- + +..+.|.||++-+...++.+|+|++||+|.|||+++||
T Consensus 6 g~~~~~-~--~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 6 GEPRPL-E--GKTLKEVLEEMGV--E-------------LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TEEECC-T--TCCHHHHHHHHTB--C-------------GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred CEEEEc-C--CCcHHHHHHHcCC--C-------------CCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence 345555 4 7999999999841 1 35788999999999999999999999999999999998
No 14
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=99.33 E-value=4.9e-13 Score=82.05 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=50.8
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++++. ++||.+|++.|.- + +..+.|.||++-+...++.+|+|++||+|.|||+++||
T Consensus 7 g~~~~~~~--~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 7 DQAMQCAA--GQTVHELLEQLDQ--R-------------QAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SCEECCCT--TCCHHHHHHHHTC--C-------------CSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEEcCC--CCcHHHHHHHcCC--C-------------CCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence 35556655 8999999999831 0 35788999999999888889999999999999999998
No 15
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=99.14 E-value=3.1e-11 Score=78.91 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=48.7
Q ss_pred CceEEecCCCC-CCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLT-GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g-~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++++. + .||.+||+.|. ++ ...+.|.||++-+...+..+|+|+|||+|.|||+|+||
T Consensus 27 Ge~~el~~--~~~Tv~dLL~~L~--~~-------------~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 27 GKDVKWKK--DTGTIQDLLASYQ--LE-------------NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TEEECCSS--SCCBHHHHHHHTT--CT-------------TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred CEEEECCC--CCCcHHHHHHHhC--CC-------------CCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence 45555655 6 89999999883 11 23678999999998888889999999999999999998
No 16
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=98.95 E-value=1.1e-10 Score=73.48 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=44.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.++++++. ++||.+|++.|. ++ ...+.|.|||+-+.. +|+|++||+|.||||++||
T Consensus 22 ~~~~~~~~--~~Tv~dLl~~L~--~~-------------~~~v~VavNg~~v~~----~~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 22 EKEIEWRE--GMKVRDILRAVG--FN-------------TESAIAKVNGKVVLE----DDEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCCCS--SCCHHHHHHTTT--CS-------------SCSSCEEETTEEECS----SSCCCSSCCCBCSCCCCCC
T ss_pred CEEEECCC--CCcHHHHHHHhC--CC-------------CcCEEEEECCEECCC----CCCcCCCCEEEEEcccccC
Confidence 44555555 899999999875 11 235679999998763 5999999999999999998
No 17
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=98.92 E-value=2.8e-09 Score=66.05 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=43.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++++++. +.||.+|++.|.- + ...+.|.||++-+.. +++|++||+|.|||+++||
T Consensus 16 ~~~~~~~--~~tv~~Ll~~l~~--~-------------~~~v~vavN~~~v~~----~~~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 16 KILESGA--PRRIKDVLGELEI--P-------------IETVVVKKNGQIVID----EEEIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEESS--CCBHHHHHHHTTC--C-------------TTTEEEEETTEECCT----TSBCCTTCEEEEEECTTCC
T ss_pred eeEECCC--CCcHHHHHHHhCC--C-------------CCCEEEEECCEECCC----cccCCCCCEEEEEeccccC
Confidence 3466766 7999999998831 0 235789999997753 4599999999999999998
No 18
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=98.73 E-value=9.9e-09 Score=64.59 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=46.6
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+++ . +.||.+||+.|. ++ ...+.|.|||+=+.--+..+|.|++||.|.|+|+++||
T Consensus 8 ~~~e~-~--~~Tl~~LL~~l~--~~-------------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 8 EQREV-Q--SASVAALMTELD--CT-------------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp EEECC-C--CSBHHHHHHHTT--CC-------------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEEEc-C--CCcHHHHHHHcC--CC-------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 44455 3 799999999763 11 13578999999887777778999999999999999998
No 19
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=98.68 E-value=8e-09 Score=65.83 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=48.1
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.++++...+.||.+||+.|.-.. ..++.|.|||+=+.--+..+|.|++||.|.|+++++||
T Consensus 8 e~~e~~~~~~~Tl~~LL~~l~~~~--------------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 8 KPSTVDGAESLNVTELLSALKVAQ--------------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEEECSSCSCEEHHHHHHHHTCSC--------------TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred EEEEcCCCCCCcHHHHHHHcCCCC--------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 455665112799999999884210 23577999999887777778999999999999999998
No 20
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=98.09 E-value=5.5e-06 Score=52.05 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.6
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..++++++. ++||+|||+.|.-. ...+.|++||+-+..- ..+ +||.|.|++.++||
T Consensus 11 ~~~~~ev~~--g~Tv~dLL~~Lgl~---------------~~~VvV~vNG~~v~~d----~~l-~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 11 ETSEVAVDD--DGTYADLVRAVDLS---------------PHEVTVLVDGRPVPED----QSV-EVDRVKVLRLIKGG 66 (74)
T ss_dssp SEEEEECST--TCSHHHHHHTTCCC---------------SSCCCEECCCCCCCTT----SSS-CCCCEEECSSCSCC
T ss_pred cceeEEcCC--CCcHHHHHHHcCCC---------------cceEEEEECCEECCHH----HCC-CCCEEEEEEeeccc
Confidence 445567766 99999999965410 1146799999987543 355 59999999999998
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=98.05 E-value=1e-05 Score=53.58 Aligned_cols=54 Identities=20% Similarity=0.058 Sum_probs=42.3
Q ss_pred EecCCCCCCHHHHHHHHHH--HcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 24 LFSSYLTGTIKGLIEWLKL--NKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~L~~--~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
+++. |+||.|+|+.+.- .+|+.. + ..+.|.|||+-+. .+|+|+|||.|.|++++
T Consensus 31 ~v~~--g~TV~daI~~~gi~~~~peId---------l-~~~~V~Vng~~v~----~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 31 QVDE--GITVQTAITQSGILSQFPEID---------L-STNKIGIFSRPIK----LTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEET--TCBHHHHHHHHTHHHHCTTCC---------T-TTSEEEEEECSCC----TTCBCCTTCEEEECCCC
T ss_pred EcCC--CCcHHHHHHHcCCCccCCccc---------c-cccEEEEcCEECC----CCccCCCCCEEEEEecc
Confidence 4444 9999999998853 555421 1 1467999999986 78999999999999987
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.05 E-value=0.00094 Score=40.01 Aligned_cols=56 Identities=16% Similarity=0.042 Sum_probs=42.1
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+.++++. |+|+.|+++.+...++ +..+.+.|||+-++. +++|++||.|.|+....+
T Consensus 11 ~~~~~~~--g~T~~dla~~i~~~l~-------------~~~vaa~vNg~lvdl----~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 11 EIKRLPQ--GATALDFAYSLHSDLG-------------DHCIGAKVNHKLVPL----SYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp CEEEECT--TCBHHHHHHHHCSHHH-------------HTEEEEEETTEECCT----TCBCCSSSBEEEEECCCC
T ss_pred CEEEcCC--CCcHHHHHHHHhhccc-------------cceEEEEECCEEeCC----CcCcCCCCEEEEEECCCC
Confidence 5567777 9999999988743221 124667899986654 699999999999987653
No 23
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=96.20 E-value=0.0072 Score=38.12 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=39.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+.++++. |+|+.|+...+..... + ..+-..|||+-+. ++|+|++||.|.|+..
T Consensus 16 ~~~~lp~--GaT~~D~A~~Ih~~lg---~----------~~v~AkVNG~~v~----L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 16 DVISLPI--GSTVIDFAYAIHSAVG---N----------RMIGAKVDGRIVP----IDYKVKTGEIIDVLTT 68 (78)
T ss_dssp CEEEEET--TCBHHHHHHHHCHHHH---H----------TEEEEEETTEEEC----TTCBCCTTCBEEEEEC
T ss_pred CEEEecC--CCCHHHHHHHhhhhhh---c----------ceEEEEECCEEcC----CCcccCCCCEEEEEcc
Confidence 4558888 9999999887754331 1 1244677998775 4799999999999864
No 24
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=95.43 E-value=0.06 Score=35.35 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=45.6
Q ss_pred ecCccCCCCCccCCCCceEEe-cCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc---CCcccc
Q psy9168 5 FPLEKNHTPYFDSFPKPTVLF-SSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY---GELTYE 80 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ve~-~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L---~GldT~ 80 (96)
||-.+...|.|+ . -+.+ +. |+||.|+...|-...... +..-+|=|.+.+|- =|++++
T Consensus 15 Ytk~~G~~pd~~---d-pviL~~~--GsTv~Dfa~~IH~di~~~-------------fkyA~VwG~saK~~~qrVgldh~ 75 (93)
T 2eki_A 15 YTKPKGQLPDYT---S-PVVLPYS--RTTVEDFCMKIHKNLIKE-------------FKYALVWGLSVKHNPQKVGKDHT 75 (93)
T ss_dssp EECCTTSCCCSS---S-CEEEETT--SCCHHHHHHHHCTTCTTT-------------EEEEEEBSTTSSSSSEEECSSCC
T ss_pred EeCCCCCCCCCC---C-CEEEecC--CCCHHHHHHHHHHHHHhh-------------ccEEEEecccccCCCEECCCCcE
Confidence 454555566553 2 3555 76 999999998876644321 22344444444332 378999
Q ss_pred cCCCCEEEEeeccC
Q psy9168 81 LKENDTIMFISTLH 94 (96)
Q Consensus 81 L~dgD~V~iiP~va 94 (96)
|+|||+|.|+..-.
T Consensus 76 L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 76 LEDEDVIQIVKKSG 89 (93)
T ss_dssp CCSSEEECEEECCS
T ss_pred ecCCCEEEEEeCCC
Confidence 99999999997643
No 25
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=92.58 E-value=0.67 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.9
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+......||++|-+.+.+...-. +-+|+. .|+ +|-++ ..| .++-+++|+.|.++...-||
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~------~L~d~---~tL--~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTL--SDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTT---CBT--GGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCe------ECCCC---CcH--HHcCCCCCCEEEEEEeCCCC
Confidence 444444445899999999998876321 223332 221 11121 122 24678999999999999998
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=92.38 E-value=0.9 Score=26.08 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=38.8
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......||++|-+.+.+...- .+-+|+. .|+ +|-++ ..| .++.+++|+.|.++....||
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~------~L~d~---~tL--~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDE---KTA--ADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTT---SBG--GGGTCCTTCEEEEEECCC--
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCC---CcH--HHcCCCCCCEEEEEEeCCCC
Confidence 344445555589999999999887632 2223332 222 11122 122 24678999999999999998
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=91.70 E-value=0.42 Score=28.64 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
...+.+.+......||.+|-+.+.+...- .+.+|+- .|+ +|-++. .| .++.+++|+.|.++-.+-|
T Consensus 20 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~---tL--~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 20 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEK---TA--ADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTS---BG--GGGTCCTTCEEEECCCCCC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCe------ECCCCC---cH--HHcCCCCCCEEEEEEeCCC
Confidence 33455555555589999999999887642 2333432 222 121222 22 2467899999999999998
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 88 G 88 (88)
T 3dbh_I 88 G 88 (88)
T ss_dssp C
T ss_pred C
Confidence 8
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=91.61 E-value=0.46 Score=28.15 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=39.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++.+......||.+|-+.+.+...- .+.+|+. .|+ +|-++ ..| .++.+++|+.|.++..+-||
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~------~L~d~---~tL--~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTL--SDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTT---SBT--GGGTCCTTCEEEEECCCCCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCC---CCH--HHcCCCCCCEEEEEEECcCC
Confidence 44444444589999999999887642 2333332 222 11122 222 24578999999999888876
No 29
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.50 E-value=0.54 Score=27.90 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=38.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+......||.+|-+.+.+...-. +.+|+. +|+ +|-++ ..|. ++.+++|+.|.++..+-||
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~------~L~d~---~tL~--~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTLS--DYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TBE------ECCTT---CBTT--TTTCCTTCEEEEEECCC--
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CCe------ECCCC---CCHH--HCCCCCCCEEEEEEeccCC
Confidence 444455555899999999998876322 223332 222 11121 2232 4578999999999888776
No 30
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=90.13 E-value=0.97 Score=27.66 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
....+++.+......||++|-+.+.+... ..+.+|+. .|+ +|-++ ..| .++.+++|+.|.++...-
T Consensus 16 ~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~---~tL--~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 16 TLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTL--SDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp ETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTT---SBS--GGGTCCTTCEEEEEC---
T ss_pred eCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCC---CcH--HHcCCCCCCEEEEEEeCC
Confidence 44556666666668999999999988763 22333432 222 12122 222 245789999999998888
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 84 GG 85 (88)
T 1sif_A 84 GG 85 (88)
T ss_dssp --
T ss_pred CC
Confidence 87
No 31
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=89.32 E-value=0.26 Score=33.21 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+++-.+..++|++||+|.|
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEE
T ss_pred eEECCEEcccCCCCEEECCCCCEEEE
Confidence 78899997666777889999999987
No 32
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=88.90 E-value=2 Score=27.16 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~va 94 (96)
..+++.+......+++.|++..+++..-.. ..+.++-+|+.++ +.+|+ ++|||.|.++...-
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~-----------~~~rf~FdG~~l~---~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPIN---ETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCS-----------TTEEEEETTEECC---TTCCTTTTTCCTTEEEEEEECCC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcC---CCCCHHHcCCCCCCEEEEEEecc
Confidence 345677776668999999999998764211 2345555776543 33444 88999999998777
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 80 gg 81 (91)
T 2io0_B 80 GG 81 (91)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 33
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.87 Score=28.43 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=42.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
...+++.+......||.+|-+.|.+...- .+.+|+. .|+ +|-+++ .| .++.+++|+.|.++-.+-|
T Consensus 30 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~---tL--~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 30 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL--SDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTC---BS--GGGTCCTTEEEEEECBCSC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCE------ECCCCC---cH--HHCCCCCCCEEEEEEecCC
Confidence 33455555555689999999999887642 2333432 222 121222 22 2467999999999999988
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 98 G 98 (98)
T 4hcn_B 98 G 98 (98)
T ss_dssp C
T ss_pred C
Confidence 7
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=88.55 E-value=0.93 Score=27.71 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=39.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++.+......||.+|-+.|.+...-. +-+|+. +|+ +|-++. .| .++-+++|+.|.++..+-||
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~-~G~------~L~d~~---tL--~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL--SDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTS---BT--GGGTCCTTCEEEEEECCCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE-CCE------ECCCCC---cH--HHcCCCCCCEEEEEEEcCCC
Confidence 445555555899999999998876422 223332 222 121222 22 24678999999999888776
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.28 E-value=1.8 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=39.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......||.+|-+.+.+...- .+.+|+. .|+ .|-+++ .| .++.+++|+.|.++....||
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk------~L~d~~---tL--~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF-QGQ------VLQDWL---GL--GIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE-TTE------ECCSSS---BH--HHHTCCTTEEEEEEECSCCC
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE-CCE------EccCCC---CH--HHCCCCCCCEEEEEEeccCC
Confidence 344444444589999999999987632 2223332 222 111221 12 24568899999999998887
No 36
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=87.60 E-value=1.2 Score=27.29 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..+++.+......||.+|-+.|.+...- .+.+|+- .|+ +|-|+. .|. ++.+++|+.|.++-.+-||
T Consensus 9 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~---tL~--~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEK---TAA--DYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTS---BTT--TTTCCTTCEEEEECBCC--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-CCe------ECCCCC---cHH--HcCCCCCCEEEEEEECCCC
Confidence 3455556665689999999999887642 2333332 222 111222 222 4678999999999888776
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=87.09 E-value=3 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=38.9
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+......||++|-+.+.+...-. +.+|+. +|+ +|-++ ..| .++.+++|+.|.++....||
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~-~Gk------~L~D~---~tL--~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTL--SDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE-TTE------ECCTT---SBT--GGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCC---CCH--HHcCCCCCCEEEEEEeCCCC
Confidence 444455555899999999999876422 223332 222 11121 122 24568899999998888776
No 38
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=86.66 E-value=0.36 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
-++|||+.|. ..++|++||+|.|
T Consensus 91 gt~VNG~~V~----~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVS----SPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECC----SCEEECTTCEEEE
T ss_pred CEEECCEEcC----CcEECCCCCEEEE
Confidence 4889999885 2589999999987
No 39
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=86.31 E-value=1.2 Score=27.55 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=40.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++.+......||.+|-+.|.+... ..+.+|+.. |+ +|-+++ .| .++.+++|+.|.++..+-||
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~---tL--~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA-GA------PLEDEA---TL--GQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET-TE------ECCTTS---BH--HHHTCCSSCEEEEECCCCCC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC-CE------ECCCCC---cH--HHCCCCCCCEEEEEEecCCC
Confidence 4555555568999999999988763 223333322 22 111221 12 24678999999999999998
No 40
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=86.26 E-value=0.81 Score=28.03 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=35.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.++++. .++|+.|+.+.+...+ . +.-+.+.|||+=++ ++++|++++.|.|+.
T Consensus 20 ~~~~~~~-~~~T~~dia~~i~~~l---~----------~~~vaakvNg~l~d----L~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 20 KQVDAES-WKTTPYQIACGISQGL---A----------DNTVIAKVNNVVWD----LDRPLEEDCTLELLK 72 (88)
T ss_dssp CEEEEET-TTCCHHHHHHHSSTTT---G----------GGCCCEEESSSEEC----SSSCCCSSEEEEECS
T ss_pred CEEEccc-CCCCHHHHHHHhhhcc---c----------cceEEEEECCEEEC----CCcCcCCCCEEEEEe
Confidence 4445552 1589988887664322 1 12355678998665 689999999999875
No 41
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=86.15 E-value=3.1 Score=26.46 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=39.6
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+.+......||.+|-+.+.+...- .+.+|+. .|+ +|-++ ..|. ++.+++|+.|.++..+-||
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~---~tL~--~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTLS--DYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCSS---CBTT--TTTCCTTCEEEEEECCCC-
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCC---CcHH--HcCCCCCCEEEEEEeCCCC
Confidence 344444444589999999999887642 2223332 222 11121 2232 4578999999999999998
No 42
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=86.04 E-value=3.3 Score=25.98 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=42.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~va 94 (96)
..+++++......+++.|++..+++..-. ...+.++-+|+.+. +.+|+ ++|||.|.++...-
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~---~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPIN---ETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCC-----------GGGEEEEETTEECC---TTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCC-----------ccceEEEECCEEcC---CCCCHHHcCCCCCCEEEEEeecc
Confidence 34566666666889999999999887422 12355666777654 33444 88999999999888
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 92 GG 93 (93)
T 2d07_B 92 GG 93 (93)
T ss_dssp --
T ss_pred CC
Confidence 77
No 43
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=85.17 E-value=0.48 Score=32.56 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.|. ..+.|++||+|.|
T Consensus 112 t~VNG~~i~----~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 112 TYVNGKKVT----EPSILRSGNRIIM 133 (154)
T ss_dssp EEETTEECC----SCEECCTTCEEEE
T ss_pred eEECCEEcC----CceECCCCCEEEE
Confidence 789999873 2578999999987
No 44
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=85.11 E-value=0.58 Score=30.51 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=19.5
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
-++|||+.+. ..++|++||+|.|=+
T Consensus 81 gt~vNg~~i~----~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 81 ETYVDGQRIS----ETTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEETSCBCS----SCEEECTTCEEEETT
T ss_pred CEEECCEEcC----CCEECCCCCEEEECC
Confidence 3688999885 347999999998743
No 45
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=84.89 E-value=5.5 Score=28.33 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=45.2
Q ss_pred eeecCccC-CCCCccCCCCceEEecCCCCCCHHHHHHHHHHHc-CCCCccceecCCccccce----EEEEcCcCccccCC
Q psy9168 3 WTFPLEKN-HTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNK-LTERPELFVQGDSVRPGI----LVLINEADWELYGE 76 (96)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~V----~VlVNg~Di~~L~G 76 (96)
|.|--++. ..|||+.+ +|+. ..+.||-|++..+.... |.+. |.. ..+.|+ .|.|||+....
T Consensus 10 ~R~~~~~~~~~~~~~~~---~v~~--~~~~tlL~~l~~~~~~~~~~l~---~~~--~c~~g~Cg~C~v~i~G~~~~a--- 76 (241)
T 2bs2_B 10 FKYDPQSAVSKPHFQEY---KIEE--APSMTIFIVLNMIRETYDPDLN---FDF--VCRAGICGSCGMMINGRPSLA--- 76 (241)
T ss_dssp EECCTTCTTCCCEEEEE---EEEC--CTTCBHHHHHHHHHHHTCTTCC---CCC--SSSSSSSCTTEEEETTEEEEG---
T ss_pred EEeCCCCCCCCceEEEE---EEeC--CCCChHHHHHHHhchhcCCCCc---cCC--CCCCCCCCCCEeEECCCeecc---
Confidence 66655554 67888643 4444 45999999999988664 2221 111 123344 67789986532
Q ss_pred cccccCC--CCEEEEee
Q psy9168 77 LTYELKE--NDTIMFIS 91 (96)
Q Consensus 77 ldT~L~d--gD~V~iiP 91 (96)
=.|++.+ |++++|=|
T Consensus 77 C~~~~~~~~g~~~~ie~ 93 (241)
T 2bs2_B 77 CRTLTKDFEDGVITLLP 93 (241)
T ss_dssp GGCBGGGCTTSEEEEEC
T ss_pred hhCcHhHcCCCeEEEec
Confidence 1356666 56676655
No 46
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=84.87 E-value=0.65 Score=27.43 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=38.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcc---ccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWE---LYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~---~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......||++|-+.++++..-... ...++-+|+-.+ -+ .++-+++||.|.++-..-||
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~-----------~qrL~~~G~~L~d~~tl--~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMN-----------SLRFLFEGQRIADNHTP--KELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGG-----------GEEEEETTEECCTTCCH--HHHTCCTTEEEEEEECCCC-
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcc-----------cEEEEECCEEeCCCCCH--HHcCCCCCCEEEEEEeccCC
Confidence 344444444489999999999887532110 122233443221 11 14568999999999998887
No 47
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=84.29 E-value=1.2 Score=31.81 Aligned_cols=52 Identities=6% Similarity=-0.034 Sum_probs=38.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.++++. |+|+.|+.+.+..... +.-+...|||+=++ ++++|++|+.|.|+-
T Consensus 10 ~~~~~~~--g~T~~dia~~i~~~l~-------------~~~vaakvNg~l~d----L~~~l~~~~~ve~it 61 (224)
T 1tke_A 10 SQRHYDH--AVSPMDVALDIGPGLA-------------KACIAGRVNGELVD----ACDLIENDAQLSIIT 61 (224)
T ss_dssp CEEECSS--CBCHHHHHHHHCHHHH-------------HHCCEEEETTEEEE----TTCCBCSCEEEEEEC
T ss_pred CEEEecC--CCCHHHHHHHHhhhcc-------------cceEEEEECCEEec----cceEcCCCCeEEEEe
Confidence 5567777 8999999988754331 12356778998665 479999999999874
No 48
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=84.13 E-value=3.9 Score=25.76 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=44.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccC-CcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYG-ELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~-GldT~L~dgD~V~iiP~vaGG 96 (96)
..+++++......+++.|++..+++..-. ...+.++-+|+.++--+ =.+..++|||.|.++...-||
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~-----------~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 45667777666899999999999887421 12344555666543211 112348999999999877665
No 49
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.84 E-value=3.5 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=42.6
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCccc----ccCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTY----ELKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT----~L~dgD~V~iiP~va 94 (96)
..++|.+......+++.|++..+++..-... .+.++.+|+.+. +.+| -++|||.|.++...-
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~-----------~~rf~FdG~~l~---~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMR-----------QIRFRFDGQPIN---ETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTT-----------TSCEESSSSBCC---TTSCTTTTTCCTTEEEEECCCCC
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcc-----------eEEEEECCEEcC---CCCCHHHcCCCCCCEEEEEEecc
Confidence 3456777777789999999999988742211 122333454432 2233 489999999998877
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 99 GG 100 (104)
T 1wz0_A 99 SG 100 (104)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 50
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=82.70 E-value=1.2 Score=27.83 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcc---ccCCcccccCCCCEEEEeeccCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWE---LYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~---~L~GldT~L~dgD~V~iiP~vaG 95 (96)
..+++.+......||++|-+.++++..-.. ....++.+|+-.+ -| .++-+++||.|.++-..-|
T Consensus 30 ~g~~~~l~v~~~~tv~~lK~~i~~~~gip~-----------~~qrLif~Gk~L~d~~tl--~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 30 DSSEIHFKVKMTTHLKKLKESYCQRQGVPM-----------NSLRFLFEGQRIADNHTP--KELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCH--HHHTCCTTCEEEEEESSSC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCh-----------hhEEEEECCeEcCCCCCH--HHCCCCCCCEEEEEEecCC
Confidence 345554554458999999999988763211 1122333443221 11 1457899999999999988
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 8
No 51
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.65 E-value=2.5 Score=25.31 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=38.8
Q ss_pred ceEEe-cCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLF-SSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~-~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+ +.....||.+|-+.|.+... ..+.+|+. .|+ +|-+++ .| .++.+++|+.|.++....||
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk------~L~d~~---tL--~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY-RGK------QLENGY---TL--FDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE-TTE------ECCSSS---BH--HHHTCCTTCEEEEEECCCCS
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE-CCe------ECCCCC---CH--HHCCCCCCCEEEEEEeCCCC
Confidence 34444 24448999999999988763 22333332 221 111221 12 24568999999999888876
No 52
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.49 E-value=5 Score=24.65 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=36.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHH-----cCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLN-----KLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~-----~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+.+.+......||.+|-+.|.+. .|..+.+|+.. |+ +|-+++ .| .++.+++|+.|.++-
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~-Gk------~L~D~~---tL--~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA-GK------ILNDDT---AL--KEYKIDEKNFVVVMV 74 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET-TE------ECCTTS---BG--GGGTCCSSSEEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC-CE------ECCCcC---cH--HHCCCCCCCEEEEEE
Confidence 344555555589999999999987 44444444432 32 222222 23 246789999997753
No 53
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=82.17 E-value=1.7 Score=27.88 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=37.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCcccc-CCcccccCCCCEEEEe
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELY-GELTYELKENDTIMFI 90 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L-~GldT~L~dgD~V~ii 90 (96)
|-.+..+.+.....++|++|++.-+.+..-...+ .|..+..|..++-- .=.|+.++|||.|..+
T Consensus 16 ~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~----------~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 16 SSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHE----------RIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp ESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCT----------TCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCc----------eEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 3344445555555999999999998877533220 12233333332221 1236789999999764
No 54
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=81.95 E-value=1.7 Score=26.51 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=35.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++.+......||.+|-+.|.+... ..+.+|+. .|+. |-+++ .| .++.+++|+.|.++-...||
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk~------L~D~~---tL--~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGKP------LEDQL---PL--GEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES-SSSC------CCTTS---BH--HHHHCSTTCEEEEEEC----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE-CCEE------CCCCC---cH--HHcCCCCCCEEEEEEEcCCC
Confidence 4444444448999999999988764 22333432 2321 11221 12 24578899999998887776
No 55
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=81.71 E-value=3.7 Score=29.67 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=43.9
Q ss_pred eeecCccCC-CCCccCCCCceEEecCCC-CCCHHHHHHHHHHHc-CCCCccceecCCccccce----EEEEcCcCccccC
Q psy9168 3 WTFPLEKNH-TPYFDSFPKPTVLFSSYL-TGTIKGLIEWLKLNK-LTERPELFVQGDSVRPGI----LVLINEADWELYG 75 (96)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~ve~~~~~-g~TV~dLL~~L~~~~-~~~~~~lf~~~g~lr~~V----~VlVNg~Di~~L~ 75 (96)
|.|--++.. .|||+++ +++... +.||-|+|..+...+ |.+.-+- + -+.|+ .|.|||+.+..
T Consensus 17 ~R~~~~~~~~~~~~~~~-----~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~---~--c~~g~Cg~C~v~i~G~~~~a-- 84 (252)
T 2h88_B 17 YRWDPDKPGDKPRMQTY-----EVDLNKCGPMVLDALIKIKNELDSTLTFRR---S--CREGICGSCAMNIAGGNTLA-- 84 (252)
T ss_dssp EECCTTSTTSCCEEEEE-----EEEGGGSCSBHHHHHHHHHHHTCTTCCCCC---S--CSSSSSCTTEEEETTEEEEG--
T ss_pred EEeCCCCCCCCceEEEE-----EEecCCCCChHHHHHHHhCcccCCCccccC---C--CCCCCCCCCEEEECCcEEcc--
Confidence 666444444 7888654 455555 899999999987643 3332111 1 13344 67899985432
Q ss_pred CcccccCC--CCEEEEee
Q psy9168 76 ELTYELKE--NDTIMFIS 91 (96)
Q Consensus 76 GldT~L~d--gD~V~iiP 91 (96)
=.|++.+ |+.++|=|
T Consensus 85 -C~~~~~~~~g~~~~iep 101 (252)
T 2h88_B 85 -CTKKIDPDLSKTTKIYP 101 (252)
T ss_dssp -GGSBCCCCTTSCEEEEC
T ss_pred -ccCCHhHcCCCceEEec
Confidence 2355555 45566544
No 56
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=81.30 E-value=2.9 Score=26.76 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
..+++.+......||++|-+.|.++..-. +.+|+- .|+ +|-+++ .|. ++.+++|+.|.++-.+-||
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL~--~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TLS--DYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTS---BTT--TTTCCTTCEEEEEECCCC-
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCC---cHH--HCCCCCCCEEEEEEecCCC
Confidence 33555555555899999999998876422 333332 222 121222 232 4578999999999999887
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=80.92 E-value=5.7 Score=25.53 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=43.5
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 16 DSFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 16 ~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
.....+++.++.....||.+|-+.|.+... ..+.+|+.. |+ +|-++ ..|. ++.+++|+.|.++-..
T Consensus 15 k~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~---~tL~--~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 15 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA-GK------QLEDG---RTLS--DYNIQRESTLHLVLRL 82 (114)
T ss_dssp EETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTT---CBTT--TTTCCSSCEEEEEECC
T ss_pred EeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCC---CcHH--HCCCCCCCEEEEEEEc
Confidence 344556666666668999999999988763 223334322 22 12122 2232 4678899999998887
Q ss_pred CCC
Q psy9168 94 HGG 96 (96)
Q Consensus 94 aGG 96 (96)
.||
T Consensus 83 ~GG 85 (114)
T 2kdi_A 83 RGG 85 (114)
T ss_dssp CSS
T ss_pred CCC
Confidence 776
No 58
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=80.75 E-value=0.77 Score=37.18 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=45.5
Q ss_pred eeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccC
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELK 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~ 82 (96)
|.|--++...|||++| +++...+.||-|+|..|. .. ..++ .--+.|||+..- . .|.++
T Consensus 30 ~R~~p~~~~~p~~~~y-----~v~~~~~~~vLd~L~~ik-~l-~fr~-----------sCam~ING~~~l--a--~t~~~ 87 (514)
T 3kwl_A 30 FRFETNKDYNPAYESY-----FLEYQEDQYLLDLLKQLK-GV-SYSE-----------NIALKINQIAVF--E--DAKVS 87 (514)
T ss_dssp EECBTTSCSCCEEEEE-----EEECCTTCBHHHHHTTST-TC-CCCS-----------SCCEEETTEEEC--S--CCBHH
T ss_pred EEeCCCCCCCCceEEE-----EEeCCCCCcHHHHHHHhh-hC-eeec-----------cceEEECCEehh--h--hhhHH
Confidence 6776677778999876 334445899999999887 11 1121 344778999853 2 46655
Q ss_pred C-----CCEEEEeec
Q psy9168 83 E-----NDTIMFIST 92 (96)
Q Consensus 83 d-----gD~V~iiP~ 92 (96)
+ |+.|.|-|-
T Consensus 88 ~~~~~~~~~i~iePl 102 (514)
T 3kwl_A 88 DLVAFFSKEWVLDPL 102 (514)
T ss_dssp HHHHHHCSEEEEECS
T ss_pred HHhhccCCcEEEEEC
Confidence 4 788888773
No 59
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=80.35 E-value=4.9 Score=25.90 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=40.0
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......||.+|-+.+.+... ..+.+++- .|+ .|-++ ..| .++.+++|+.|.++-..-||
T Consensus 86 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~------~L~d~---~tL--~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 86 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTL--SDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTT---SBT--GGGTCCTTCEEEEEECCCC-
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE-CCE------ECCCC---CCH--HHcCCCCCCEEEEEEecCCC
Confidence 34555555558999999999988753 22333332 222 11122 122 24578999999999999887
No 60
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=80.35 E-value=3.7 Score=26.93 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=43.5
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLHG 95 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~vaG 95 (96)
.+++.+......+++.|++..+++..-.. ..+.++.+|+.+. +.+|+ ++|||.|.++...-|
T Consensus 36 g~~i~fkVk~~t~l~kL~~ay~ek~gi~~-----------~~~rfiFdG~~L~---~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 36 GAEMFFRIKSRTALKKLIDTYCKKQGISR-----------NSVRFLFDGTPID---ETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp SCCEEEEECTTSSHHHHHHHHHHHHTCCS-----------SSCEEESSSCBCC---SSSHHHHHHCSSEEEEEEECCCCC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcC---CCCCHHHcCCCCCCEEEEEEcccC
Confidence 45666666668999999999998764221 1233444665543 33455 899999999998888
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 102 g 102 (110)
T 2k8h_A 102 G 102 (110)
T ss_dssp C
T ss_pred c
Confidence 7
No 61
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=80.21 E-value=0.92 Score=32.24 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.2
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+-.++|||+.|. ..|.|+.||.|.|
T Consensus 139 ~a~t~VNG~~I~----~~~~L~~GDrI~l 163 (184)
T 4egx_A 139 GADTYVNGKKVT----EPSILRSGNRIIM 163 (184)
T ss_dssp TCCEEETTEECC----SCEECCTTCEEEE
T ss_pred CCeEEEcCEEcc----ccEEcCCCCEEEE
Confidence 345899999884 3589999999986
No 62
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=79.62 E-value=1.2 Score=29.82 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=18.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.+|||+.+. .+.-++|++||+|.|
T Consensus 96 T~vNg~ri~--~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 96 TFLNKTRIP--PRTYCRVHVGHVVRF 119 (130)
T ss_dssp EEETTEECC--TTCCEECCTTCEEEE
T ss_pred eEECCEECC--CCceeECCCCCEEEE
Confidence 667998764 344568999999987
No 63
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=79.54 E-value=5.1 Score=26.10 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~va 94 (96)
..+++.+......+++.|++..+++..-. ...+.++-+|+.+. +.+|+ ++|||.|.++...-
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~-----------~~~~rF~FdG~rl~---~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQ---ADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECC---TTCCTTTTTCCTTEEEEEEECC-
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCC-----------cccEEEEECCeEcC---CCCCHHHcCCCCCCEEEEEeecc
Confidence 35666666656889999999999877421 12445555776553 33444 88999999998877
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 105 GG 106 (106)
T 2eke_C 105 GG 106 (106)
T ss_dssp --
T ss_pred cC
Confidence 76
No 64
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.73 E-value=6.4 Score=24.56 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=38.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.++.....||.+|-+.|.+... ..+.+|+.. |+ +|-|+. .-| .++.+++|+.|.+.-...||
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~-gk------~L~D~~--~tL--~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM-EQ------LLTDDH--CSL--GSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET-TE------EECCSS--SBH--HHHTCCTTEEEEECBCCCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC-CE------ECCCCc--ccH--HHCCCCCCCEEEEEECCCCC
Confidence 3433333348999999999988764 223344432 21 222221 112 24678999999998777665
No 65
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=77.84 E-value=0.93 Score=28.38 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. .++|++||+|.|
T Consensus 67 t~vng~~i~-----~~~L~~gd~i~i 87 (100)
T 3po8_A 67 TTVNNAPVQ-----EWQLADGDVIRL 87 (100)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred EEECCEECc-----eEECCCCCEEEE
Confidence 667988764 579999999987
No 66
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=77.62 E-value=0.92 Score=29.09 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
++|||+.+. .+..++|++||+|.|-.+
T Consensus 70 t~vng~~l~--~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 70 TVINKLKVV--KKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCC--CSSCCCCCTTCEEEEECC
T ss_pred cEECCEEcC--CCCcEECCCCCEEEEecc
Confidence 466887553 455789999999998764
No 67
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.09 E-value=3 Score=25.47 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=39.4
Q ss_pred eEEecCCCCCCHHHHHHHHHHHc----CCCCccceecCCccccceEEEEcCcCccccCCccc--ccCCCCEEEEeeccCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNK----LTERPELFVQGDSVRPGILVLINEADWELYGELTY--ELKENDTIMFISTLHG 95 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~----~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT--~L~dgD~V~iiP~vaG 95 (96)
.+.++.....||.+|-+.|.+.. |..+.+|+.. |+ +|-+++.+. ++ .+++|+.|.++-..-|
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~-Gk------~L~D~~tL~-----~~~~~i~~~~~i~lv~~~~g 88 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS-GK------LLLDHQCLR-----DLLPKQEKRHVLHLVCNVKS 88 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET-TE------ECCSSSCHH-----HHSCSSSCSEEEEEECCCCC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC-CE------ECcCcCCHH-----HHhcCCCCCCEEEEEeCCCC
Confidence 45666445899999999999975 2334444432 32 222332222 34 6789999998877766
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 89 g 89 (93)
T 1wgd_A 89 G 89 (93)
T ss_dssp C
T ss_pred C
Confidence 5
No 68
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=76.77 E-value=6.1 Score=24.80 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=37.5
Q ss_pred CCceE--EecCCCCCCHHHHHHHHHHHcCCCCccceecCCccc--cceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 19 PKPTV--LFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVR--PGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 19 ~~~~v--e~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr--~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
..+++ .+|. ..||+.|++.+.+.+.-..... ++..+| -.-.+ +.|.+. | .|+++.+||.+.|.
T Consensus 15 ~~~~~DLRIP~--~~tvK~Li~~l~ea~~l~~~~~--~~~~irv~NK~~~-L~~~~~--L--~d~~ItnGD~Leil 81 (81)
T 2bps_A 15 NGSVFDLRLSD--YHPVKKVIDIAWQAQSVSMPPR--EGHWIRVVNKDKV-FSGECK--L--SDCGITNGDRLEIL 81 (81)
T ss_dssp TCCEEEEEEET--TSBTTHHHHHHHHHSCCCSCCC--TTCEEEEGGGTEE-EETTSB--T--GGGTCCTTCEEEEC
T ss_pred CCceEEEECCC--chhHHHHHHHHHHHhCCCcCCC--CCCEEEEecCCEE-EcCCCE--E--eeCCcCCCCEEEEC
Confidence 34444 5555 8999999999999995332111 112222 22222 334333 2 27899999999863
No 69
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=76.64 E-value=9.2 Score=22.46 Aligned_cols=58 Identities=14% Similarity=0.061 Sum_probs=39.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEe
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFI 90 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~ii 90 (96)
..+++.+......+++.|++..+++..-.. ..+.++-+|+.+. +.+|+ ++|||.|.++
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~-----------~~~rf~fdG~~l~---~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPIN---ETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCT-----------TTCEEEETTEECC---TTCCTTTTTCCTTEEEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCc-----------ceEEEEECCEEcC---CCCCHHHcCCCCCCEEEEE
Confidence 346777777778999999999998764211 2344555666543 33444 8899999875
No 70
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=76.38 E-value=1.3 Score=29.92 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=20.5
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+|||+.+. .|..++|++||+|.|-.
T Consensus 105 T~VNg~~i~--~~~~~~L~~GD~I~lG~ 130 (149)
T 1gxc_A 105 TFVNTELVG--KGKRRPLNNNSEIALSL 130 (149)
T ss_dssp EEETTEECC--TTCEEECCTTEEEEESS
T ss_pred eEECCEECC--CCCeEECCCCCEEEECC
Confidence 578998653 45678999999999865
No 71
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=76.36 E-value=5.9 Score=23.05 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=38.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
.+++.+......||.+|-+.+.+...- .+.+|+- .|+ .|-++ ..| .++-+++|+.|.++-.+-|
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~---~tL--~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQ---LPL--GEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTT---SBG--GGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-CCE------ECCCC---CcH--HHCCCCCCCEEEEEEecCC
Confidence 344545555589999999999876542 2333332 222 11122 223 2467999999999877655
No 72
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=75.96 E-value=1.2 Score=28.68 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
++|||+.+. .+..++|++||+|.|=
T Consensus 78 T~vng~~l~--~~~~~~L~~gd~i~lG 102 (118)
T 1uht_A 78 TLLNSNALD--PETSVNLGDGDVIKLG 102 (118)
T ss_dssp CEESSSBCC--TTCEEECCTTEEEEET
T ss_pred eEECCEECC--CCCeEEcCCCCEEEEC
Confidence 567988753 4557899999999873
No 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=75.83 E-value=3.9 Score=24.07 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=34.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHH-----cCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLN-----KLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~-----~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.+.+......||.+|-+.+.+. .|..+.+|+. .|+ +|-+++ .| .++.+++|+.|.++-
T Consensus 16 ~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~-~Gk------~L~D~~---tL--~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDV---PI--RDYRIDEKNFVVVMV 79 (85)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE-TTE------ECCTTS---BG--GGGCCCTTSEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE-CCE------ECcCCC---CH--HHcCCCCCCEEEEEE
Confidence 34444444489999999999987 3333434443 232 222222 22 246788999998763
No 74
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=75.59 E-value=1.5 Score=28.20 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.4
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. .++|++||+|.|
T Consensus 75 t~vng~~i~-----~~~L~~gd~i~i 95 (115)
T 2xt9_B 75 TYVNREPVD-----SAVLANGDEVQI 95 (115)
T ss_dssp EEETTEECS-----EEEECTTCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 567998775 479999999987
No 75
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=75.53 E-value=8 Score=24.43 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=40.5
Q ss_pred ceEEecCCC-CCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYL-TGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~-g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+.... ..||.+|-+.|.+... ..+.+|+. .|+ +|-++ ..| .++.+++|+.|.++-..-||
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~---~tL--~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAG------FLKDN---MSL--AHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSS------BCCTT---SBT--TTTTCSSSCEEEEECSSCCS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCC---CcH--HHCCCCCCCEEEEEEEcCCC
Confidence 445555554 7899999999988763 22334443 232 11122 223 24678999999999888887
No 76
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=75.15 E-value=1.1 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.7
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
++|||+.+.- ++|++||+|.|=
T Consensus 84 T~vNg~~i~~-----~~L~~GD~I~iG 105 (131)
T 3hx1_A 84 LMINGKKVQE-----HIIQTGDEIVMG 105 (131)
T ss_dssp EEETTEEESE-----EECCTTCEEECS
T ss_pred eEECCEEeEe-----EECCCCCEEEEC
Confidence 5679988752 899999999873
No 77
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=74.77 E-value=4.1 Score=30.80 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=42.7
Q ss_pred eeecCc-cCCCCCccCCCCceEEecCCC-CCCHHHHHHHHHHHcC-CCCccceecCCccccceEEEEcCcCccccCCccc
Q psy9168 3 WTFPLE-KNHTPYFDSFPKPTVLFSSYL-TGTIKGLIEWLKLNKL-TERPELFVQGDSVRPGILVLINEADWELYGELTY 79 (96)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~~ve~~~~~-g~TV~dLL~~L~~~~~-~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT 79 (96)
|.|--+ ....|||+.| +++... +.||-|+|..+...+. .+.-+--...|.= .-=.|.|||+.+.. =.|
T Consensus 41 ~R~~p~~~~~~p~~~~~-----~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~C-GsC~V~InG~~~la---C~t 111 (282)
T 3vr8_B 41 YRFNPEEPGAKPKLQKF-----DVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGIC-GSCAMNIAGENTLA---CIC 111 (282)
T ss_pred EEeCCCCCCCCCCcEEE-----EEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCC-CCCEEEECCEEecc---hhh
Confidence 444333 3567888754 454444 7999999998876432 2211100011111 22468899997642 234
Q ss_pred ccC--CCCEEEEee
Q psy9168 80 ELK--ENDTIMFIS 91 (96)
Q Consensus 80 ~L~--dgD~V~iiP 91 (96)
++. .|++++|=|
T Consensus 112 ~v~~~~~~~~tIep 125 (282)
T 3vr8_B 112 NIDQNTSKTTKIYP 125 (282)
T ss_pred hHhHhcCCcEEecc
Confidence 554 255666644
No 78
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=73.91 E-value=6.4 Score=28.07 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=42.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
...+++.+......||.+|-+.|.+... ..+.+|+- .|+ +|-+++ .|. ++.+++|+.|.++-.+-|
T Consensus 113 l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~-~Gk------~L~D~~---tL~--dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 113 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TLS--DYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTC---BGG--GGTCCTTCEEEECCCCCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE-CCE------ECCCCC---CHH--HCCCCCCCEEEEEEEcCC
Confidence 3445555555568999999999987753 22334442 232 121222 232 467999999999988887
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 181 G 181 (189)
T 3q3f_A 181 G 181 (189)
T ss_dssp C
T ss_pred C
Confidence 6
No 79
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=73.77 E-value=1.6 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
++|||+.+. .+ .++|++||+|.|=.
T Consensus 89 T~VNg~~i~--~~-~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 89 TFINGNRLV--KK-DYILKNGDRIVFGK 113 (151)
T ss_dssp EEETTEECC--SS-CEEECSSEEEEETT
T ss_pred eEECCEEcC--CC-ceECCCCCEEEECC
Confidence 678988764 44 78999999998843
No 80
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.53 E-value=11 Score=24.70 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=37.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+.+......||.+|-+.|.+... ..+.+|+. .|+ +|-+++ .| .++-+++|+.|.++-...||
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL--~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF-AGK------ILKDQD---TL--IQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE-TTE------EESTTS---CG--GGTTCSSSEEEEEEEC----
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE-CCE------EcCCCC---CH--HHcCCCCCCEEEEEeccCCC
Confidence 44555555558999999999988764 22333432 222 222222 23 24678899999998777665
No 81
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=73.23 E-value=3.7 Score=31.98 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=20.9
Q ss_pred eEEEEcCcCccc---cCCcccccCCCCEEEEee
Q psy9168 62 ILVLINEADWEL---YGELTYELKENDTIMFIS 91 (96)
Q Consensus 62 V~VlVNg~Di~~---L~GldT~L~dgD~V~iiP 91 (96)
+.-.|-|....+ ..|.|+.|+|||+|.|+.
T Consensus 343 ~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 343 RNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp EEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred hHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 333444554443 359999999999999974
No 82
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=72.95 E-value=12 Score=23.10 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=38.7
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcC-cCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINE-ADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg-~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++.++.....||.+|-+.|.+... ..+.+|+. .|+ +|-++ +- | .++.+++|+.|.++-...||
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~~t---L--~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY-SGI------ELADDYRN---L--NEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE-TTE------EECCTTSB---H--HHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCE------ECCCCccc---H--HHCCCCCCCEEEEEEeCCCC
Confidence 344444448999999999988753 22334432 222 22222 22 2 24578999999998887776
No 83
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=72.68 E-value=7.3 Score=23.51 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
...+++.+......||.+|-+.|.+...- .+.+|+- .|+ +|-++. .| .++-+++|+.|.++-
T Consensus 25 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~---tL--~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 25 LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL--SDYNIQKESTLHLVL 88 (91)
T ss_dssp TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTC---BT--GGGTCCTTCEEEEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CCe------ECCCcC---cH--HHCCCCCCCEEEEEE
Confidence 34455555555589999999999887642 2334432 232 122222 22 246789999998864
No 84
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=72.59 E-value=11 Score=23.92 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=41.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+.+......||.+|-+.|.+... ..+.+|+. .|+ +|-+++. | .++.+++|+.|.++-.+-||
T Consensus 45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~t---L--~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 45 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-EGI------FIKDSNS---L--AYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp SEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-TTE------EECTTSB---H--HHHTCCSSCEEEEEECCCSC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE-CCE------ECCCCCC---H--HHCCCCCCCEEEEEEEcCCC
Confidence 34555555558999999999988764 22334443 232 2223222 2 24678999999999888887
No 85
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=71.92 E-value=8 Score=26.61 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=39.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++.+......||.+|-+.+.+..+ ..+.+|+- .|+ +|-+++ .|. ++.+++|+.|.++-.+-||
T Consensus 11 k~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL~--~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TLS--DYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCTTS---BGG--GGTCCTTCEEEEEECCCC-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-CCc------cccCcC---cHH--HcCCCCCCEEEEEEEeccc
Confidence 4555555558999999999987764 22334432 232 121222 232 4678999999998888776
No 86
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.53 E-value=15 Score=22.55 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=38.5
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.++. ..||++|=+.|.+.+.-. .-+|+..++. .+...+.+++.+ +.|+ .+.+.+||.|.+.-
T Consensus 27 ~~l~~--~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~-~~L~--~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 27 KQLPD--SMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDL-QPLQ--FYSVENGDCLLVRW 91 (97)
T ss_dssp EEEET--TSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSS-SBSG--GGTCCTTCEEEEEC
T ss_pred EECCC--CCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCc-ccHh--hcCCCCCCEEEEEe
Confidence 34444 899999999999888522 4456654332 222333333322 3342 57899999998753
No 87
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=71.07 E-value=2.6 Score=29.33 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. ..+|++||+|.|
T Consensus 119 T~VNg~~i~-----~~~L~~GD~I~i 139 (162)
T 2kfu_A 119 TYVNREPVD-----SAVLANGDEVQI 139 (162)
T ss_dssp EEETTBCCS-----EEECCSSCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 577888775 478999999987
No 88
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=70.59 E-value=3.8 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
++|||+.+. .+..++|++||+|.|=.+..
T Consensus 77 T~vNg~~l~--~~~~~~L~~GD~I~lG~~~~ 105 (138)
T 2pie_A 77 VWLNRARLE--PLRVYSIHQGDYIQLGVPLE 105 (138)
T ss_dssp EEETTEECC--TTCCEECCTTCEEEESCCCT
T ss_pred eEECCEEcC--CCCcEECCCCCEEEECCCCC
Confidence 678997653 45678999999999976543
No 89
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=70.40 E-value=12 Score=29.78 Aligned_cols=76 Identities=12% Similarity=-0.023 Sum_probs=42.1
Q ss_pred CccCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCccc-------eec--CC-----ccccceEEEEcCcCccccCCccc
Q psy9168 14 YFDSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPEL-------FVQ--GD-----SVRPGILVLINEADWELYGELTY 79 (96)
Q Consensus 14 ~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~l-------f~~--~g-----~lr~~V~VlVNg~Di~~L~GldT 79 (96)
++.+.+..+..+..+.|.++-++++...+..+..+-.. |.. +| +=|.+=..++||.-.. .|=.++
T Consensus 306 ~~~~~~~~~~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~-~G~~~y 384 (399)
T 2pmv_A 306 GVELLFNETINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLN-EGVADY 384 (399)
T ss_dssp SCCCCEECCEEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECS-SCTTTC
T ss_pred cccCCCCcceEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeecc-cchhhe
Confidence 33333333334445559999999999988754332111 110 11 1223444566644322 234458
Q ss_pred ccCCCCEEEEe
Q psy9168 80 ELKENDTIMFI 90 (96)
Q Consensus 80 ~L~dgD~V~ii 90 (96)
.+++||.|.|-
T Consensus 385 ~~~~gd~I~f~ 395 (399)
T 2pmv_A 385 IPFNHEHITAN 395 (399)
T ss_dssp CCCTTCEEEEE
T ss_pred ecCCCCEEEEE
Confidence 89999999873
No 90
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=70.36 E-value=7.8 Score=25.57 Aligned_cols=65 Identities=20% Similarity=0.112 Sum_probs=38.9
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+++.+......||.+|=+.+.+... ....+|+- +|+ +|-++ ..| .++-+++|+.|.++-.+-||
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~------~L~d~---~tL--~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQ---LPL--GEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTT---SBG--GGGTCCTTCEEEEEECCC--
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE-CCe------ecCCC---CCH--HHcCCCCCCEEEEEEecCCC
Confidence 45555555568999999999987653 22323332 221 12122 223 25679999999999777776
No 91
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=70.08 E-value=1.5 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=17.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+.- .++|++||+|.|
T Consensus 71 t~vng~~i~~----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 71 VIVEGRKIEH----QSTLSANQVVAL 92 (106)
T ss_dssp CEETTEECSS----EEECCTTCCEEE
T ss_pred eEECCEECCC----CeECCCCCEEEE
Confidence 5679887653 368999999986
No 92
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=69.80 E-value=6.3 Score=26.58 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=39.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
....+.+.+......||.+|=+.+.++.. ....+|+- .|+ .|- |-..|. ++-+++|+.|.++-.+-
T Consensus 103 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g~------~L~---D~~tL~--~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 103 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLE---DGRTLS--DYNIQKESTLHLVLRLR 170 (172)
T ss_dssp ESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECC---TTSBSG--GGTCCTTCEEEECC---
T ss_pred cccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE-CCc------cCC---CCCcHH--HhCCCCCCEEEEEEecC
Confidence 34455666666668999999999988753 22334432 222 111 222332 56799999999999888
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 171 gG 172 (172)
T 3u30_A 171 GG 172 (172)
T ss_dssp --
T ss_pred CC
Confidence 87
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=69.52 E-value=16 Score=21.96 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=37.4
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEe
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFI 90 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~ii 90 (96)
++.+......+++.|++..+++..-.. ..+.++-+|+.+ .+.+|+ ++|||.|.++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~-----------~~~rf~fdG~~l---~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSG-----------HKLSFFFDGTKL---SGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTT-----------CCCEEEETTEEC---CSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc-----------ccEEEEECCEEc---CCCCCHHHcCCCCCCEEEEe
Confidence 677766668999999999998874211 124455566654 333455 8899999875
No 94
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=69.26 E-value=11 Score=23.70 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
...+.+.+......||++|-+.|.+...-. +.+|+- .|+ +|-|+ ..|. ++-+++|+.|.++
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~---~tL~--~~~i~~g~~i~lv 71 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY-SGK------VLQDS---KTVS--ECGLKDGDQVVFM 71 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-TTE------ECCTT---SBTT--TTTCCTTCEEEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCE------ECCCc---CCHH--HcCCCCCCEEEEE
Confidence 345666677766899999999998876422 333332 232 12222 2232 4678999999887
No 95
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=69.20 E-value=1.9 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.4
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. .++|++||+|.|
T Consensus 129 T~VNG~~i~-----~~~L~~GD~I~l 149 (157)
T 3oun_A 129 TTVNNAPVQ-----EWQLADGDVIRL 149 (157)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred eEECCEECc-----eEECCCCCEEEE
Confidence 567988775 579999999987
No 96
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=68.83 E-value=16 Score=26.32 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~va 94 (96)
..++|.+.-....+++.|+++.+++.+-. ...+..+-+|+.+. +.+|| ++|||.|.++-..-
T Consensus 37 ~g~~v~fkIk~~t~l~kL~~ay~er~Gi~-----------~~~~RF~FdG~rI~---~~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 37 GSSEIFFKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQ---ADQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp SSCEEEEEECTTSCTHHHHHHHHHHHSSC-----------GGGEEEEETTEECC---TTCCTTTTTCCTTEEEEEEECCS
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHhCCC-----------hhhEEEEECCEEcC---CCCCHHHcCCCCCCEEEEEeccC
Confidence 45667777767899999999999987432 22455666787764 34454 99999999988776
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 103 gg 104 (200)
T 3pge_A 103 GG 104 (200)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 97
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.78 E-value=5 Score=24.48 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=39.1
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
.+.+.+......||.+|-+.|.+... ..+.+|+. .|+ +|-+++- | .++-+++|+.|.++-...||
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L--~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-TGK------ILRDQDI---L--SQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-TTE------ECCTTSC---H--HHHTCCTTEEEECCBCCSSC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCcCC---H--HHCCCCCCCEEEEEEeCCCC
Confidence 34444444448999999999988764 22334432 222 1212222 2 14568899999988777765
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=68.77 E-value=5.4 Score=24.37 Aligned_cols=62 Identities=6% Similarity=0.102 Sum_probs=33.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.|+++. .+|+++|.+.|.+..+-. ...++..... +..+ .+..+.-+. +..|+.||.|.+.|
T Consensus 16 ~Ri~v~~--~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p-~~~l-~~~~~~~l~-----~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 16 KRITATK--RETAATFLKKVAKEFGFQNNGFSVYINRNK-TGEI-TASSSKSLH-----LLKIKHGDLLFLFP 79 (80)
T ss_dssp EECCCCS--SCCHHHHHHHHHHHTCCCTTTCCCCCSCCG-GGGS-SSCCCCTTT-----TTCCCTTCCEEC--
T ss_pred EEEEcCC--cChHHHHHHHHHHHcCCCCCcceEEecCCC-CCcc-cCCCCCCHH-----HcCCCCCCEEEEec
Confidence 3455544 789999999999988643 2234433221 1111 001222222 23589999998877
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=68.08 E-value=10 Score=27.94 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccC
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLH 94 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~va 94 (96)
..++|.+......+++.|+++.+++..-.. ..+..+-+|+.|. +.+|| ++|||.|.++-..-
T Consensus 65 dG~eV~FKIKrtTpL~KLmeAYcERqGL~~-----------~sIRFLFDGqRI~---~ddTPeDLdMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 65 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-----------DSLTFLYDGIEIQ---ADQTPEDLDMEDNDIIEAHREQI 130 (207)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHTTCCG-----------GGSCEEETTEECC---SSCCTTTTTCCTTEEEEECCCCC
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCCc-----------ccEEEEECCeecC---CCCCHHHcCCCCCCEEEEEEecc
Confidence 345666666667899999999999874221 1344555776654 33454 99999999988777
Q ss_pred CC
Q psy9168 95 GG 96 (96)
Q Consensus 95 GG 96 (96)
||
T Consensus 131 GG 132 (207)
T 3tix_A 131 GG 132 (207)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 100
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=67.87 E-value=3.7 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
++|||+.+. .+..++|++||+|.|=.+
T Consensus 85 T~vNg~~i~--~~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 85 VWLNRARLE--PLRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp EEESSCBCC--BTCCEECCSSCCEEESCC
T ss_pred eEECCEECC--CCccEECCCCCEEEECCC
Confidence 678998764 455689999999998654
No 101
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=67.84 E-value=1.7 Score=29.47 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=16.8
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. ..+|++||+|.|
T Consensus 110 T~VNg~~i~-----~~~L~~GD~I~i 130 (143)
T 2kb3_A 110 TYVNREPRN-----AQVMQTGDEIQI 130 (143)
T ss_dssp CEETTEECS-----EEECCTTEEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 467888765 478999999987
No 102
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=66.96 E-value=22 Score=22.69 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+.+.+......||.+|-+.+.+...- .+.+|+.. |+ +|-++. .| .++.+++|+.|.++....||
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~-g~------~L~d~~---tL--~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--SDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTS---BT--GGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC-Ce------ECcCcc---cH--HHhccCCCCeeEEEeecccc
Confidence 34444555589999999999887642 22333322 21 111221 12 24567888888887766553
No 103
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=66.24 E-value=3 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=20.8
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
++|||+.+. .+..++|++||+|.|=.+.
T Consensus 81 T~vNg~~l~--~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 81 TWLNGQKVE--KNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEETTEECC--TTCCEECCTTCEEEECTTS
T ss_pred eEECCEEcC--CCCeEEcCCCCEEEECCCc
Confidence 467887653 4556899999999986543
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=66.24 E-value=20 Score=22.93 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=38.4
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEe
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFI 90 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~ii 90 (96)
++.+.-....+++-|+++.+++..-.. ..+.++.+|+.+ .+.+|| ++|||.|-++
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~-----------~~vrF~FDG~rI---~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSG-----------RKLSFFFDGTKL---SGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSS-----------SCCEEEETTEEC---CSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCc-----------ccEEEEECCEEc---CCCCCHHHcCCCCCCEEEEe
Confidence 455555557899999999998774211 245667788765 455676 8999999875
No 105
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=66.01 E-value=1.8 Score=29.64 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+|||+.+. .|..++|++||+|.|+
T Consensus 85 T~VNg~ri~--~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 85 SYLNNNRMI--QGTKFLLQDGDEIKII 109 (158)
T ss_dssp CEETTEECC--SSEEEECCSSCCEESC
T ss_pred eEECCEEcC--CCceEEcCCCCEEEEe
Confidence 467988663 5667899999999983
No 106
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=66.00 E-value=1.6 Score=28.50 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.5
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. ..++|++||+|.|
T Consensus 77 t~vNg~~i~----~~~~L~~Gd~i~i 98 (128)
T 1r21_A 77 TQVNGSVID----EPVRLKHGDVITI 98 (128)
T ss_dssp CEETTEECS----SCEECCTTEEEEC
T ss_pred EEECCEECC----CcEEcCCCCEEEE
Confidence 567998875 2578999999987
No 107
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=65.90 E-value=3.4 Score=25.34 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=18.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|+|||+-+ -..+.|+.||+|.|.
T Consensus 28 V~VNg~~~----~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 28 VWLNGSCA----KASKEVKAGDTISLH 50 (92)
T ss_dssp CEETTEEC----CTTCBCCTTCEEEEC
T ss_pred EEECCEEc----CCCCCcCCCCEEEEE
Confidence 78999854 246889999999884
No 108
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=65.49 E-value=3.5 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=20.4
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
++|||+.+. .+..++|++||+|.|=.+
T Consensus 109 T~vNg~~i~--~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNGQKVE--KNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETTEEEC--TTEEEECCTTCEEEESCS
T ss_pred eEECCEEcC--CCCceEcCCCCEEEECCC
Confidence 578987653 455689999999998553
No 109
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=64.36 E-value=25 Score=23.30 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=41.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeec
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFIST 92 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~ 92 (96)
.++|.+......+++-|+++.+++..-. ...+.++-+|+.+. +.+|| ++|||.|.++-.
T Consensus 50 g~ev~fkIk~tt~L~KLm~aY~er~Gl~-----------~~~irFlFDG~rI~---~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 50 SSEIHFKVKMTTHLKKLKESYCQRQGVP-----------MNSLRFLFEGQRIA---DNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCC-----------TTSEEEEETTEECC---TTCCTTTTTCCTTCEEEEEEC
T ss_pred CCEEEEEEccCChHHHHHHHHHHHhCCC-----------hhhEEEEECCeECC---CCCCHHHcCCCCCCEEEEEee
Confidence 4566666666889999999999987421 22455666777653 34555 999999998754
No 110
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=64.15 E-value=2.8 Score=27.40 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=20.9
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
..|||+. +-.+..+.|++||.+.++|-.
T Consensus 66 ~~vng~~--l~k~~~~~L~~GD~l~Ll~~~ 93 (102)
T 3kt9_A 66 TSIDSVV--IGKDQEVKLQPGQVLHMVNEL 93 (102)
T ss_dssp CEETTEE--CCBTCEEEECTTCCEEEETTE
T ss_pred CeECCEE--cCCCCeEEeCCCCEEEEccCC
Confidence 3447643 447788999999999998743
No 111
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=63.68 E-value=15 Score=29.30 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=38.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcC------ccccC--------C-cccccCCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEAD------WELYG--------E-LTYELKEN 84 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~D------i~~L~--------G-ldT~L~dg 84 (96)
+++|.++. |+++-++++...+. +.. -|.-......+.+--|||.- |.++. | .++.+++|
T Consensus 331 ~~~Vtv~~--gssll~vLk~A~e~-~~F---~F~~~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~~Gv~~y~~~~g 404 (414)
T 2bb6_A 331 RHSVSVPA--GSSLEDILKNAQEH-GRF---RFRTQASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQQGIADYRPKDG 404 (414)
T ss_dssp EEEEEEET--TCCHHHHHHHHHHS-SSC---CEEEECCTTSCEEEEETTEECCTTEEEEEEETTTEECSSCTTTCCCCTT
T ss_pred ceEEEecC--CCCHHHHHHHHHhc-cCC---ceEeeecCCCceEEEECCCccCCCceEEEEECCCCcccccccceecCCC
Confidence 34566666 99999999999887 432 13222233334555555432 33332 2 34778999
Q ss_pred CEEEE
Q psy9168 85 DTIMF 89 (96)
Q Consensus 85 D~V~i 89 (96)
|.|.|
T Consensus 405 e~I~f 409 (414)
T 2bb6_A 405 ETIEL 409 (414)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99987
No 112
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=63.66 E-value=2 Score=30.34 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+|||+.+. .|..++|++||+|.|+
T Consensus 109 T~VNg~ri~--~~~~~~L~~GD~I~l~ 133 (182)
T 1qu5_A 109 SYLNNNRMI--QGTKFLLQDGDEIKII 133 (182)
T ss_dssp CEETTEECC--SSEEEECCTTBCCEEE
T ss_pred eEECCEEcC--CCcceEcCCCCEEEEE
Confidence 467888663 4567899999999993
No 113
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=61.75 E-value=26 Score=21.71 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=36.6
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++++. ..||.+|-+.|.+... ..+.+|+. .|+ +|-+++- | .++.+++|+.|.++-...||
T Consensus 30 ~l~v~~--~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L--~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 30 DFSVTD--TCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPDS---L--AQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEET--TCCHHHHHHHHHHHHTCCTTTEEEEE-TTE------ECCTTSC---H--HHHTCCTTEEEEEEECCCCC
T ss_pred EEEECC--CCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCc---H--HHcCCCCCCEEEEEEcCCCC
Confidence 455555 7999999999987763 22333332 221 1112221 2 14568899999998776664
No 114
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=61.20 E-value=20 Score=20.27 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=34.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+.+.+......||++|-+.+.+...- .+.+|+. .|+ +|-|++ .| .++.+++|+.|.++..
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk------~L~d~~---tL--~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQ---TV--ESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTS---BT--GGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE-CCe------EcCCCC---CH--HHcCCCCCCEEEEEEc
Confidence 33444444489999999999887632 2223332 222 122222 22 2456889999988754
No 115
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=61.10 E-value=2.7 Score=27.99 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=19.3
Q ss_pred EEEcCcCccc------cCCcccccCCCCEEEE
Q psy9168 64 VLINEADWEL------YGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~------L~GldT~L~dgD~V~i 89 (96)
++|||+.+.- ..+..++|++||+|.|
T Consensus 78 T~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 78 TLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred EEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 5779987753 1245789999999986
No 116
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=60.58 E-value=14 Score=24.80 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=39.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+..+++.+......||.+|-+.+.+...- .+.+|+-. |+ .|-++ ..| .++.+++|+.|.++-...|
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~-g~------~L~d~---~tL--~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDG---RTL--SDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTT---CBT--GGGTCCTTCEEEEEECCCC
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC-Cc------ccccc---CCH--hHcCCcccceeeeeecccc
Confidence 44455555555589999999999887642 23344322 21 11111 122 2467888888888876665
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 96 g 96 (172)
T 3u30_A 96 G 96 (172)
T ss_dssp C
T ss_pred c
Confidence 4
No 117
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=60.32 E-value=13 Score=23.23 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=36.6
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
+++++. ..||.+|-+.|.+...- .+.+|+. .|+ +|-+++ .| .++.+++|+.|.++-...||
T Consensus 35 ~l~v~~--~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL--~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 35 DFSVTD--TCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPD---SL--AQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEET--TCBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTS---BH--HHHTCCTTCEEEEEECCCCS
T ss_pred EEEECC--CCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcC---cH--HHCCCCCCCEEEEEEcCCCC
Confidence 455554 89999999999887632 2323332 222 111221 22 24568899999998776664
No 118
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=59.83 E-value=6.3 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=18.4
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|.|||+-+ -..+.|+.||+|.|.
T Consensus 36 V~VNG~~v----k~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 36 VHYNGQRS----KPSKIVELNATLTLR 58 (133)
T ss_dssp EEETTEEC----CTTCBCCTTCEEEEE
T ss_pred EEECCEEc----CCCCEeCCCCEEEEE
Confidence 78899864 346889999999884
No 119
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=59.20 E-value=2 Score=28.21 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++.+......||.+|-+.|.+... ....+|+- .|+ +|-++ ..|. ++-+++|+.|.++-..-||
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~---~tL~--~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDG---RTLS--DYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE-CCE------ECCCC---Cchh--hhccCCCCEEEEEEEcCCC
Confidence 344444447899999998876543 22333432 222 11122 2232 4578999999998877776
No 120
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=56.45 E-value=7.1 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=24.0
Q ss_pred CccCCCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 14 YFDSFPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 14 ~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
|+..=.+|+|.++. ..|++|+++.|.++.
T Consensus 15 f~~Dgssksi~V~~--~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 15 YSEDGACRSVEVAA--GATARHVCEMLVQRA 43 (100)
T ss_dssp EETTSCEEEEEECT--TCCHHHHHHHHHCSS
T ss_pred EecCCCEEEEEECC--CCcHHHHHHHHHHHc
Confidence 45555678888888 999999999999766
No 121
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=56.30 E-value=8.2 Score=23.37 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=37.4
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 16 DSFPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 16 ~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.....++++++.....||.+|=+.|.+..+ ..+.+|+.. |+. +|-+++. | .++.+++|+.|.++
T Consensus 16 k~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk~-----lL~D~~t---L--~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 16 ENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD-GIV-----ILREDLT---V--EQCQIVPTSDIQLE 81 (84)
T ss_dssp EETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET-TEE-----CCCSSSB---H--HHHTCCTTSCEEEE
T ss_pred EecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC-CEE-----ecCCcCC---H--HHcCCCCCCEEEEE
Confidence 344556666666668999999999988754 223344422 220 0212222 2 24568899888765
No 122
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.21 E-value=9.9 Score=23.84 Aligned_cols=60 Identities=8% Similarity=0.153 Sum_probs=35.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
..+++.+......||++|-+.|.+... ..+.+|+- .|+ +|-+++ .|. ++-+++|+.|.++
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL~--~~gI~~g~tI~lv 97 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQ---TVE--SYHIQDGHSVHLV 97 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-TTE------ECCTTS---BTT--TTTCCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCcC---cHH--HCCCCCCCEEEEE
Confidence 344455555568999999999988764 22334443 232 122222 222 4578999998876
No 123
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=55.74 E-value=13 Score=22.38 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+..+++.+......||++|-+.|.+... ..+.+|+. .|+ +|-++ ..|. ++.+++|+.|.++-
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~---~tL~--~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF-KGK------VLVET---STLK--QSDVGSGAKLMLMA 82 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE-TTE------ECCTT---CBTT--TTTCCTTEEEEEEC
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE-CCe------ECCCc---CCHH--HCCCCCCCEEEEEE
Confidence 4455555555558999999999987653 33444442 232 11122 2232 45688999988764
No 124
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=55.70 E-value=5.7 Score=26.34 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=20.3
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
..+||+. +-.+....|++||.+.++|-
T Consensus 72 ~~vng~~--l~k~~~~~L~~GD~leLl~g 98 (110)
T 2brf_A 72 STTGTQE--LKPGLEGSLGVGDTLYLVNG 98 (110)
T ss_dssp CEEC-CB--CCTTCEEEEETTCEEEEETT
T ss_pred cEECCEE--cCCCCEEEecCCCEEEEccC
Confidence 4567744 45678899999999999874
No 125
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=55.67 E-value=12 Score=22.00 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=18.9
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
|.-+|+-+ .-..+|.|+.||.+.++-+
T Consensus 46 I~R~~~~~--~p~~~~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 46 IVRGGVLV--VPRGDTEILSGDKLYVIVS 72 (86)
T ss_dssp EEETTEEE--CCCTTCBCCTTCEEEEEEE
T ss_pred EEECCEEE--CCCCCCEECCCCEEEEEEC
Confidence 33455443 3556899999999998754
No 126
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=55.61 E-value=9.9 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
|.|||+-+. -..+.++.||+|.+-.+.
T Consensus 78 V~VNG~~v~---~ps~~V~~gD~I~V~~~~ 104 (159)
T 1c05_A 78 ILVDGSRVN---IPSYRVKPGQTIAVREKS 104 (159)
T ss_dssp EEETTEECC---CSSCBCCTTCEEEECGGG
T ss_pred EEECCEEeC---cCCcEeCCCCEEEEeCce
Confidence 789998763 235789999999986543
No 127
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.05 E-value=23 Score=21.87 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=32.3
Q ss_pred EEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
++++. ..||.+|-+.|.+... ..+.+|+. .|+ +|-++ .|. ++.+++|+.|.++-
T Consensus 22 l~v~~--~~TV~~lK~~I~~~tgip~~~QkLi~-~Gk------~L~D~----tL~--~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 22 VELNT--DEPPMVFKAQLFALTGVQPARQKVMV-KGG------TLKDD----DWG--NIKMKNGMTVLMMG 77 (96)
T ss_dssp EEEES--SSCHHHHHHHHHHHTCCCTTTSCCEE-TTE------ECCSS----CCC--SCCCCSSCEEECCC
T ss_pred EEECC--CCcHHHHHHHHHHHHCcCHHHeEEEE-CCc------CCCCC----CHH--HCCCCCCCEEEEEe
Confidence 45554 8999999999987754 33445553 232 11122 222 35678888887753
No 128
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=54.60 E-value=3.9 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=18.6
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+|||+.+. .+..++|++||+|.|=.
T Consensus 119 T~VNg~ri~--~~~~~~L~~GD~I~~G~ 144 (158)
T 3els_A 119 TCLNNVVIP--GARYIELRSGDVLTLSE 144 (158)
T ss_dssp CEETTEECC--TTCCEECCTTEEEESSS
T ss_pred cEECCEEcC--CCceEEcCCCCEEEECC
Confidence 466887654 34457899999998743
No 129
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=54.29 E-value=2.3 Score=28.31 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=18.0
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
.+|||+.+. .+..++|++||+|.|
T Consensus 102 T~vNg~~l~--~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 102 TFLGHIRLE--PHKPQQIPIDSTVSF 125 (140)
T ss_dssp EESSSCEEC--SSSCCEECTTCCBBC
T ss_pred eEECCEECC--CCccEECCCCCEEEE
Confidence 567887654 345688999999876
No 130
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.24 E-value=22 Score=21.78 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=31.0
Q ss_pred EecCCCCCCHHHHHHHHHHHc---CCCCccce-ecCCccccceEEEEcCcCccccCCcccccCCCCEEEE
Q psy9168 24 LFSSYLTGTIKGLIEWLKLNK---LTERPELF-VQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 24 e~~~~~g~TV~dLL~~L~~~~---~~~~~~lf-~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
+++. .+||.+|-+.+.+.. +..+.+|. ...|+ +|-++ +-|. ++.+++|+.|.|
T Consensus 29 ~v~~--~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk------~L~D~---~tL~--~y~i~~~stl~~ 85 (88)
T 2dzj_A 29 KVEP--HATIAEIKNLFTKTHPQWYPARQSLRLDPKGK------SLKDE---DVLQ--KLPVGTTATLYF 85 (88)
T ss_dssp EECS--SCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC------CCCTT---CBTT--TSSCCSEEEEEE
T ss_pred EcCC--CCcHHHHHHHHHHHhcCCChHHeEEEecCCCc------CcCCC---CCHH--HcCCCCCCEEEE
Confidence 5655 899999999998853 34455554 33343 12122 2232 456777777654
No 131
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=53.93 E-value=34 Score=20.61 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=37.3
Q ss_pred CCceEEe-cCCCCCCHHHHHHHHHHHcC--CCCcccee--cCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 19 PKPTVLF-SSYLTGTIKGLIEWLKLNKL--TERPELFV--QGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 19 ~~~~ve~-~~~~g~TV~dLL~~L~~~~~--~~~~~lf~--~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
..+.+.+ +....+||.+|-+.|.+... ..+.+|+. -.|+ +|-+++.+. ++.+++|+.|.++-+
T Consensus 15 ~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk------~L~D~~~L~-----~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 15 GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKLG-----ALKLKPNTKIMMMGT 82 (90)
T ss_dssp TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBHH-----HHTCCTTEEEEEECC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc------CcCCCCCHH-----HcCCCCCCEEEEEec
Confidence 3455556 66668999999999987753 33445541 1222 121222222 356889999888743
No 132
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=53.68 E-value=2.7 Score=28.90 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=0.0
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCCC
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHGG 96 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaGG 96 (96)
++.+......||.+|-+.|.+... ..+.+|+- .|+ +|-++. .|. ++-+++|+.|.++-.+-||
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL~--dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TLS--DYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------EccccC---cHH--HcCCCCCCEEEEEeeccCC
Confidence 334444447899999988877653 22333432 222 122222 232 4568899999998887776
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.59 E-value=11 Score=22.90 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=35.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
.+.+.+......||.+|-+.|.+.. ..+.+|+. .|+ +|-++ + ..|. ++.+++|+.|.++-.
T Consensus 17 g~~~~~~v~~~~TV~~LK~~i~~~~-~~~qrLi~-~Gk------~L~D~-~-~tL~--~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 17 DTEELAVARPEDTVGTLKSKYFPGQ-ESQMKLIY-QGR------LLQDP-A-RTLS--SLNITNNCVIHCHRS 77 (95)
T ss_dssp TEEEEEEECSSSBHHHHHHHHSSST-TTTCEEEE-TTE------ECCCS-S-CBTT--TTTCCTTEEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHhhC-cCcEEEEE-CCE------EccCC-c-CCHH--HcCCCCCCEEEEEEC
Confidence 3444444445899999999998776 33333432 222 22222 0 1222 467889999988743
No 134
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.03 E-value=31 Score=19.63 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=33.5
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+.+.+......||++|-+.+.+... ..+.+|+. .|+ +|-+++ .| .++-+++|+.|.++-
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk------~L~d~~---tL--~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-KGK------ALADGK---RL--SDYSIGPNSKLNLVV 78 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-TTE------ECCTTS---BG--GGGTCCSSBCCEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-CCe------ECCCCC---cH--HHcCCCCCCEEEEEE
Confidence 3333444448999999999988764 22333432 222 111222 22 245688999887764
No 135
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=51.99 E-value=9.5 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
|+|||+-+. -..+.|+.||+|++-.
T Consensus 126 V~VNG~~v~---~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVD---LPSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECC---CTTCBCCTTCEEEECG
T ss_pred EEECCEEeC---cCCcCcCCCCEEEEcC
Confidence 889998763 2467899999999854
No 136
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=51.52 E-value=46 Score=21.49 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=41.5
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeec
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFIST 92 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~ 92 (96)
..++.+.-.-..-++-|++..+++.+-.. ..+.++.+|..|. +.+|| ++|||.|-.+-.
T Consensus 30 g~ev~FkIK~tt~l~KL~~aYc~r~gv~~-----------~sirFlfDG~rI~---~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 30 ADLVRLPLRMSEPLQSVVDHMATHLGVSP-----------SRILLLFGETELS---PTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp SSEEEEEECSSSCTHHHHHHHHHHHTSCG-----------GGEEEEETTEECC---TTSCHHHHTCCSSCEEEEEEC
T ss_pred CcEEEEEEecCChHHHHHHHHHhhcCCCh-----------hhEEEEECCcCCC---CCCCHhHcCCCCCCEEEEEEe
Confidence 45666666667788888888888774322 2466777888774 44566 999999987753
No 137
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=50.13 E-value=6.5 Score=29.93 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.6
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
++|||+.+. ..++|++||+|.|
T Consensus 350 t~vng~~i~----~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 350 VHVQHERIR----SAVTLNDGDHIRI 371 (388)
T ss_dssp CEETTEECS----SEEEECTTCEEEE
T ss_pred eEECCEECC----CceECCCCCEEEE
Confidence 567888773 3579999999987
No 138
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=48.94 E-value=47 Score=25.81 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHH-----cCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEE-EEe
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLN-----KLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTI-MFI 90 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~-----~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V-~ii 90 (96)
....+.+.+......||.+|-+.|.+. ++..+-+|+. .|+ +|-+++. |. ++.+++|+.| .++
T Consensus 14 tl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy-~GK------~L~D~~t---L~--dygI~~gstIv~lv 81 (368)
T 1oqy_A 14 TLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVP---IR--DYRIDEKNFVVVMV 81 (368)
T ss_dssp ETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES-SSS------EECSSSB---TT--TTCCCTTSCEEEEE
T ss_pred eCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE-CCe------ecCCcCC---HH--HcCCCCCCEEEEEE
Confidence 344566677777789999999999985 3333444442 232 2323322 22 4578888877 444
Q ss_pred e
Q psy9168 91 S 91 (96)
Q Consensus 91 P 91 (96)
.
T Consensus 82 ~ 82 (368)
T 1oqy_A 82 T 82 (368)
T ss_dssp E
T ss_pred e
Confidence 3
No 139
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.65 E-value=17 Score=23.52 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=40.1
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHHHHcCC--CCc---------------cceecCCccccceEEEEcCcCccccCCccc
Q psy9168 17 SFPKPTVLFSSYLTGTIKGLIEWLKLNKLT--ERP---------------ELFVQGDSVRPGILVLINEADWELYGELTY 79 (96)
Q Consensus 17 ~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~---------------~lf~~~g~lr~~V~VlVNg~Di~~L~GldT 79 (96)
....+++++.....+||.+|=+.+.+...- .+. .|. -.|+ +|.+|. +-| .++
T Consensus 14 ~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~Gk------~L~dD~--~tL--~dy 82 (105)
T 1v2y_A 14 KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAGE------KLTEDR--KKL--RDY 82 (105)
T ss_dssp CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSSC------EECCSS--SBH--HHH
T ss_pred ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCCc------CccCCc--CCH--HHc
Confidence 344566666655689999999999877621 010 121 1222 222221 112 256
Q ss_pred ccCCCCEEEEeeccCC
Q psy9168 80 ELKENDTIMFISTLHG 95 (96)
Q Consensus 80 ~L~dgD~V~iiP~vaG 95 (96)
-+++||.|.|+..+-|
T Consensus 83 gI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp TCCSSEEEEEEECSCS
T ss_pred CCCCCCEEEEEehhcc
Confidence 7999999999987765
No 140
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=48.62 E-value=6.6 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=18.4
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+|||+.+. .+..++|++||+|.|=.
T Consensus 166 TfVNG~rI~--~~~~~~L~~GD~I~fG~ 191 (205)
T 3elv_A 166 TCLNNVVIP--GARYIELRSGDVLTLSE 191 (205)
T ss_dssp CEETTEECC--BTSCEECCTTCEEESSS
T ss_pred CeECCEECC--CCceeECCCCCEEEECC
Confidence 467887664 33346899999998854
No 141
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=48.53 E-value=7.5 Score=30.07 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=34.2
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
+-+.++. |+|+.|+...+-+.+... -+... --+|++. -|++++|+|||+|.|+..
T Consensus 341 ~~~~l~~--G~t~~d~a~~iH~d~~~~--f~~a~---------~~~~~~~----~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKK--GSTPRDLAFKVHTDLGKG--FLYAI---------NARTKRR----VGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEET--TCCHHHHHHHHCHHHHHT--EEEEE---------ETTTCSB----CCTTCCCCTTEEEEEEEC
T ss_pred eeEEeCC--CCCHHHHHHHHhHHHHhh--hhhhH---------HhcCCEE----cCCCccccCCCEEEEEeC
Confidence 3456666 888888887775544211 11111 0135542 289999999999999853
No 142
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=47.41 E-value=54 Score=23.00 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=42.1
Q ss_pred ceeecCccCCCCCccCCCCceEEecCCCCCCHHHHHHHHHHH-cCCCCccceecCCccccceEEEEcCcCccccCCcccc
Q psy9168 2 TWTFPLEKNHTPYFDSFPKPTVLFSSYLTGTIKGLIEWLKLN-KLTERPELFVQGDSVRPGILVLINEADWELYGELTYE 80 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ve~~~~~g~TV~dLL~~L~~~-~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~ 80 (96)
-|.|--++...|||+.+ +++.+. +.||-|++..+... .|.+.-+---..|.=+ -=.|.|||+.+.. =.|+
T Consensus 10 i~R~~~~~~~~~~~~~~---~~~~~~--~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg-~C~v~v~G~~~~a---C~~~ 80 (243)
T 1kf6_B 10 VVRYNPEVDTAPHSAFY---EVPYDA--TTSLLDALGYIKDNLAPDLSYRWSCRMAICG-SCGMMVNNVPKLA---CKTF 80 (243)
T ss_dssp EEECCTTTCSSCEEEEE---EEEECT--TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSC-CCEEEETTEEEEG---GGCB
T ss_pred EEEcCCCCCCCCeeEEE---EEecCC--CChHHHHHHHcCcccCCCcccccCCCCCcCC-CCEeEECCEEEee---eeeE
Confidence 36675555567898754 555555 99999999998755 3333111100112111 2356789985432 2366
Q ss_pred cCCC
Q psy9168 81 LKEN 84 (96)
Q Consensus 81 L~dg 84 (96)
+.+|
T Consensus 81 ~~~~ 84 (243)
T 1kf6_B 81 LRDY 84 (243)
T ss_dssp GGGC
T ss_pred HhhC
Confidence 6666
No 143
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=46.39 E-value=8 Score=29.97 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=14.4
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||+|.|
T Consensus 344 ~egk~y~v~dgDii~f 359 (363)
T 1jal_A 344 LEGKDYIVQDGDVMHF 359 (363)
T ss_dssp EECTTCBCCTTCEEEE
T ss_pred ccCCccEecCCCEEEE
Confidence 5689999999999987
No 144
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=45.71 E-value=26 Score=21.43 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=25.5
Q ss_pred cccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 58 VRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 58 lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+++.=.|.++|..|+.... .+|+.|+.|.++-
T Consensus 27 i~~~G~V~i~Ge~W~A~s~--~~i~~G~~V~Vv~ 58 (80)
T 2exd_A 27 AEDHYLVEVEGDKWIAYSD--EKLSLGDRVMVVD 58 (80)
T ss_dssp CTTCEEEEETTEEEEECCS--SCCCTTCEEEEEE
T ss_pred cCCCEEEEECCEEEEEEEC--CccCCCCEEEEEE
Confidence 4445568999999998754 6799999999874
No 145
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=45.12 E-value=20 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCc--ccee-------cCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 28 YLTGTIKGLIEWLKLNKLTERP--ELFV-------QGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 28 ~~g~TV~dLL~~L~~~~~~~~~--~lf~-------~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
+.+.|+.++|+.... +..... -.|. .+.+=|++-...+||+-..- +-.+++|+|||.|.|-
T Consensus 27 t~g~tL~dvLk~~~~-ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~-Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 27 TDAKYLGEVLESENL-VDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNT-SADQTPVSDGDAFELT 96 (101)
T ss_dssp ECCSBHHHHHHHTTC-EEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCS-CGGGCBCCTTCEEEEE
T ss_pred CCccHHHHHHHHcCc-cccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhh-chhheEecCCCEEEEE
Confidence 558999999876551 111110 0011 11223567778888887542 4457999999999884
No 146
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=45.08 E-value=9.8 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=16.9
Q ss_pred EEEcCcCccccCCcccccCCCCEEEE
Q psy9168 64 VLINEADWELYGELTYELKENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~i 89 (96)
|.|||+-+. ...+.+++||+|.+
T Consensus 48 V~VNG~~v~---~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVET---RKRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCC---CSSCCCCSSEEEEE
T ss_pred EEECCEEec---CCCCCCCCCCEEEE
Confidence 678998763 23567889998876
No 147
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=44.55 E-value=24 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=32.5
Q ss_pred eEEecCCCCCCHHHHHHHH-HHH--cCCCCccceecCCccccceEEEEcCcCccccCCccccc-CCCCEEEEee
Q psy9168 22 TVLFSSYLTGTIKGLIEWL-KLN--KLTERPELFVQGDSVRPGILVLINEADWELYGELTYEL-KENDTIMFIS 91 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L-~~~--~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L-~dgD~V~iiP 91 (96)
+++++.....||++|=+.| .+. +|..+.+|+-. |+ +|-+++. |. ++.+ ++|+.|.++-
T Consensus 33 ~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~-Gk------~L~D~~t---L~--dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 33 SIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK-GK------VLHDNLF---LS--DLKVTPANSTITVMI 94 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET-TE------EECTTCB---GG--GSCCBTTBCEEEEEE
T ss_pred EEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC-CE------ECcCcCC---HH--HcCcCCCCCEEEEEE
Confidence 4544534489999999998 443 22223334322 21 2223322 32 4678 8999998763
No 148
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=44.38 E-value=62 Score=20.89 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=40.5
Q ss_pred CccCCCC--ceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCccccc-CCCCEEE
Q psy9168 14 YFDSFPK--PTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYEL-KENDTIM 88 (96)
Q Consensus 14 ~~~~~~~--~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L-~dgD~V~ 88 (96)
+|....+ +.+.++.....||.+|=+.+.++++-. ..+++ -+|+ ++-+++.+ .++-+ ++|+.|.
T Consensus 28 ~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli-~ggk------ll~D~~TL-----~~ygI~~~G~t~h 95 (105)
T 4dbg_A 28 SVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV-IGQR------LARDQETL-----HSHGVRQNGDSAY 95 (105)
T ss_dssp EEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE------EECTTCBT-----GGGTCCSTTCEEE
T ss_pred EEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe-ccCe------EccCcCcH-----HHcCCCCCCCEEE
Confidence 4555553 577777777899999999999887422 22343 2232 22233332 25778 5999887
Q ss_pred Ee
Q psy9168 89 FI 90 (96)
Q Consensus 89 ii 90 (96)
++
T Consensus 96 L~ 97 (105)
T 4dbg_A 96 LY 97 (105)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 149
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=43.95 E-value=7.5 Score=29.96 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.3
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||+|.|
T Consensus 349 ~~gk~y~v~dgdi~~~ 364 (368)
T 2dby_A 349 LEGKDYEVQDGDVIYV 364 (368)
T ss_dssp EECTTCBCCTTEEEEE
T ss_pred ccCCCceecCCCEEEE
Confidence 5689999999999987
No 150
>2akk_A RP4479, PHNA-like protein; beta-strand protein, structural genomics, PSI, protein struc initiative; NMR {Rhodopseudomonas palustris} SCOP: b.34.11.2
Probab=43.63 E-value=12 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=12.7
Q ss_pred CCcccccCCCCEEEEee
Q psy9168 75 GELTYELKENDTIMFIS 91 (96)
Q Consensus 75 ~GldT~L~dgD~V~iiP 91 (96)
+---+.|++||.|+++-
T Consensus 7 DsnGn~L~dGDsVtlIK 23 (74)
T 2akk_A 7 DCNGALLADGDNVSLIK 23 (74)
T ss_dssp CSSCCBCCTTEEEEESS
T ss_pred cCCCCCccCCCEEEEEe
Confidence 33347899999999873
No 151
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=43.47 E-value=22 Score=24.67 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=44.7
Q ss_pred cCCCCceEEecCCCCCCHHHHHHHHHHHcCCCCc--c------ceec--CCc-cccceEEEEcCcCc----cccCCcccc
Q psy9168 16 DSFPKPTVLFSSYLTGTIKGLIEWLKLNKLTERP--E------LFVQ--GDS-VRPGILVLINEADW----ELYGELTYE 80 (96)
Q Consensus 16 ~~~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~--~------lf~~--~g~-lr~~V~VlVNg~Di----~~L~GldT~ 80 (96)
.+.|+.|+.+--=..+|++||...|.+.+|+.++ . ++-+ .++ +...+-..++|+.- .-|. +..
T Consensus 49 ~~~P~~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~--~~r 126 (143)
T 4a6q_A 49 GNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQ--SQK 126 (143)
T ss_dssp TCCCSCCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTG--GGT
T ss_pred CCCCCceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHH--HCC
Confidence 3567666766555689999999999999987632 1 1212 122 22334455566531 1222 335
Q ss_pred cCCCCEE--EEeecc
Q psy9168 81 LKENDTI--MFISTL 93 (96)
Q Consensus 81 L~dgD~V--~iiP~v 93 (96)
..-||-| +|+||.
T Consensus 127 F~iGDyidvaI~pP~ 141 (143)
T 4a6q_A 127 FQIGDYLDIAITPPN 141 (143)
T ss_dssp CCTTCEEEEEEECGG
T ss_pred CcCCCEEEEEEeCCC
Confidence 5668864 677764
No 152
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=42.83 E-value=9.8 Score=29.91 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.9
Q ss_pred cCCcccccCCCCEEEEeecc
Q psy9168 74 YGELTYELKENDTIMFISTL 93 (96)
Q Consensus 74 L~GldT~L~dgD~V~iiP~v 93 (96)
+.|.++.++|||+|.|-=-+
T Consensus 370 ~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 370 QQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EECTTCBCCTTCEEEEEEC-
T ss_pred ccCCCceeeCCCEEEEEecC
Confidence 57899999999999885433
No 153
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.02 E-value=36 Score=20.77 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=35.3
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+.+.+......||.+|-+.|.+... ..+.+|+. .|++ | ++. .| .++.+++|+.|.++-
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~------L-dd~---tL--~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLV------P-EDK---TL--REIKVTSGAKIMVVG 86 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBC------C-SSS---BH--HHHCCCTTEEEEECC
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CCee------C-CcC---cH--HHCCCCCCCEEEEEe
Confidence 34444444448999999999887653 33445553 3321 2 332 22 145688999888764
No 154
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=41.17 E-value=20 Score=22.83 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=23.2
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
=.|.++|..|+... +..|+.|+.|.++-
T Consensus 57 G~V~i~Ge~W~A~s--~~~i~~G~~V~Vv~ 84 (101)
T 2k5h_A 57 GLVKVDGETWRATS--GTVLDVGEEVSVKA 84 (101)
T ss_dssp EEEEETTEEEEEEC--SSCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEe--CCcCCCCCEEEEEE
Confidence 45888999999875 46799999999874
No 155
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=41.01 E-value=65 Score=20.20 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
..++-..++. ..||++++..|+.+.
T Consensus 19 l~k~KflVp~--~~tv~~~~~~lRkrL 43 (91)
T 4gdk_A 19 MKTKKWAVER--TRTIQGLIDFIKKFL 43 (91)
T ss_dssp CSCCEEEEET--TCBHHHHHHHHHHHT
T ss_pred ccccEEEcCC--CCCHHHHHHHHHHHh
Confidence 4566677887 899999999999987
No 156
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=40.75 E-value=13 Score=27.00 Aligned_cols=22 Identities=27% Similarity=0.087 Sum_probs=17.0
Q ss_pred EEEcCcCccccCCcccccC-CCCEEEE
Q psy9168 64 VLINEADWELYGELTYELK-ENDTIMF 89 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~-dgD~V~i 89 (96)
|+|||+-+. + .+.|+ .||+|.|
T Consensus 137 vyvNg~~i~--~--~~~L~~~GD~I~i 159 (238)
T 1wv3_A 137 VYINYELQE--Q--LTNKAYIGDHIYV 159 (238)
T ss_dssp EEETTEECC--S--SEEEEETTCEEEE
T ss_pred EEECCEEec--c--ceeccCCcCEEEE
Confidence 678998774 2 25899 9999987
No 157
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=40.57 E-value=48 Score=20.97 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=25.5
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEA 69 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~ 69 (96)
..++-..++. ..|+++++..|+++.. . + .+-++||..
T Consensus 22 l~k~KflV~~--~~t~~~~v~~lRkrL~-l-~-----------alFlyVNn~ 58 (91)
T 3w1s_C 22 LKPSVCKISM--SQSFAMVILFLKRRLK-M-D-----------HVYCYINNS 58 (91)
T ss_dssp ----EEEEET--TSBHHHHHHHHHHHHT-C-S-----------CCEEEETTT
T ss_pred ccccEEEcCC--CCCHHHHHHHHHHhhC-C-c-----------eEEEEECCc
Confidence 3455567777 8999999999999883 2 2 455888875
No 158
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=39.11 E-value=42 Score=22.14 Aligned_cols=69 Identities=12% Similarity=0.248 Sum_probs=46.8
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccc-------cCCcccccCCCCEEEEe
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWEL-------YGELTYELKENDTIMFI 90 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~-------L~GldT~L~dgD~V~ii 90 (96)
|..+.|-++. .++.++++|+.|++.-+ . ++.. +.+++.-|.+-+++..|+- ..|+... .+|..|.|.
T Consensus 29 ~~G~~isLnf-~da~i~~vl~~la~~tg--~-NiV~-d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~-~~gnvi~I~ 102 (128)
T 4ar0_A 29 FTGRKISLDF-QDVEIRTILQILAKESG--M-NIVA-SDSVNGKMTLSLKDVPWDQALDLVMQARNLDMR-QQGNIVNIA 102 (128)
T ss_dssp CSSCEEEEEE-EEEEHHHHHHHHHHTTC--C-EEEE-CTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEE-EETTEEEEE
T ss_pred CCCCceEEEE-eCCCHHHHHHHHHHHHC--C-cEEE-cCCCCceeeEeecCCCHHHHHHHHHHHcCceEE-EECCEEEEE
Confidence 4455565554 34789999999998542 2 3332 3457777888888887652 3677655 478899998
Q ss_pred ec
Q psy9168 91 ST 92 (96)
Q Consensus 91 P~ 92 (96)
|.
T Consensus 103 p~ 104 (128)
T 4ar0_A 103 PR 104 (128)
T ss_dssp EH
T ss_pred Ch
Confidence 84
No 159
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=44.99 E-value=6.5 Score=22.57 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=34.2
Q ss_pred EEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
+.++.....||.+|-+.+.+... ..+-+|+. +|+ .|-++. .| .++.+++|+.|.++...-|
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk------~L~d~~---tL--~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 13 FPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGK------ELPNHL---TV--QNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 33444447899999998887653 22333332 222 122222 22 2456889999888766544
No 160
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=38.73 E-value=79 Score=20.48 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=37.1
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHcC--CCCccce-ecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELF-VQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf-~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
...+++.+......||.+|=+.+.+... ..+.+|+ -+.|+. |-+++. | .++.+++|+.|.++-.
T Consensus 10 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~------L~d~~t---L--~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 10 LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA------LQDRVP---L--ASQGLGPGSTVLLVVD 76 (159)
T ss_dssp TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB------CCTTSC---G--GGGTCCTTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC------CCCCCC---H--HHcCCCCCCEEEEEcc
Confidence 3455566666668999999999987754 2233444 323321 111111 2 2456788888877654
No 161
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=38.37 E-value=35 Score=20.07 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=33.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
+++.+......||.+|-+.|.++..- .+.+|+- .|+ +|-+++ .|. ++-+ +|+.|.++-...
T Consensus 16 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~Gk------~L~d~~---tL~--~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 16 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-QGR------VLQDDK---KLQ--EYNV-GGKVIHLVERAP 78 (90)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTS---BGG--GGTC-TTEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-CCe------ECCCCC---CHH--HcCC-CCcEEEEEecCC
Confidence 44444444489999999999887642 2333332 222 111222 222 3456 688888765443
No 162
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=38.18 E-value=32 Score=24.15 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=35.9
Q ss_pred eeecCccCCCCCccCCCCceEEecCCC--CCCHHHHHHHHHHHcCCCCccceecCCcccc----ceEEEEcCcCc
Q psy9168 3 WTFPLEKNHTPYFDSFPKPTVLFSSYL--TGTIKGLIEWLKLNKLTERPELFVQGDSVRP----GILVLINEADW 71 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ve~~~~~--g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~----~V~VlVNg~Di 71 (96)
|.|--++...|||+++ +++..+ +.||-|+++.+....|.+.- ...-+. -=.|.|||+.+
T Consensus 8 ~R~~~~~~~~~~~~~~-----~v~~~~~~~~tll~~l~~~~~~~~~l~~-----~~~C~~g~Cg~C~v~v~G~~~ 72 (238)
T 2wdq_B 8 YRYNPDVDDAPRMQDY-----TLEADEGRDMMLLDALIQLKEKDPSLSF-----RRSCREGVCGSDGLNMNGKNG 72 (238)
T ss_dssp EECCTTTCSSCEEEEE-----EEECCTTCCCBHHHHHHHHHHHCTTCCC-----CCSSSSSSSCTTEEEETTEEE
T ss_pred EEcCCCCCCCCceEEE-----EeecCCCCCChHHHHHHHhcccCCCccc-----cccCCCCCCCCCEEEECCEEE
Confidence 5665555567898653 455556 89999999998765433211 111122 23577899864
No 163
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=38.05 E-value=23 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=22.4
Q ss_pred EEEEcCcCccccCC---------cccccCCCCEEEEeec
Q psy9168 63 LVLINEADWELYGE---------LTYELKENDTIMFIST 92 (96)
Q Consensus 63 ~VlVNg~Di~~L~G---------ldT~L~dgD~V~iiP~ 92 (96)
-|+|||+....+|. ++.+++.||+|.||-.
T Consensus 294 ~v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 332 (367)
T 3mub_A 294 SVLVDGQACPIVGRVSMDQITIRLPKLYPLGTKVTLIGS 332 (367)
T ss_dssp EEEETTEEEEBCSCCCSSCEEEEESSCCCTTCEEEEEEE
T ss_pred eEEECCEEeEEeChhcccEEEEECCCCCCCCCEEEEEeC
Confidence 38999998877764 1224788999999853
No 164
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=38.00 E-value=8.8 Score=29.95 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=14.1
Q ss_pred cCCcccccCCCCEEEE
Q psy9168 74 YGELTYELKENDTIMF 89 (96)
Q Consensus 74 L~GldT~L~dgD~V~i 89 (96)
+.|.++.++|||+|.|
T Consensus 372 ~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 372 TKGKEYVMESGDIAHW 387 (392)
T ss_dssp EEETTCBCCTTCEEEC
T ss_pred ccCCceeeeCCCEEEE
Confidence 4788999999999976
No 165
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=37.98 E-value=65 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
+.++++...+..|.+|++.|.+..+..
T Consensus 167 ~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 167 PIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred EEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 466888888999999999999877654
No 166
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=37.61 E-value=71 Score=20.32 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
--|.+.++.....||++|=+.|+++.+-. +.+|. -.|+ +|- |..-| .++.+++|+.+.+.
T Consensus 30 ~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLi-f~Gk------~Lk---D~~TL--~dY~I~dgstLhL~ 91 (93)
T 3plu_A 30 LGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQ-KGGS------VLK---DHISL--EDYEVHDQTNLELY 91 (93)
T ss_dssp TSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE------ECC---TTSBT--GGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEE-eCCE------Ecc---CcCCH--HHcCCCCCCEEEEE
Confidence 34555555555899999999998876432 21221 1222 121 33333 37899999998764
No 167
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=37.36 E-value=39 Score=22.14 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=24.3
Q ss_pred ceecCCc-cccceEEEEc-Cc--CccccCCcccccCCCCEEEEe
Q psy9168 51 LFVQGDS-VRPGILVLIN-EA--DWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 51 lf~~~g~-lr~~V~VlVN-g~--Di~~L~GldT~L~dgD~V~ii 90 (96)
+++.+|+ ....++--|- +. -+..++...-.|+|||.|.|-
T Consensus 8 V~D~dGE~p~~~~I~~Is~~~~g~Vt~~~~~~H~l~dGD~V~Fs 51 (112)
T 2v31_A 8 LTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFS 51 (112)
T ss_dssp CCCCCCSSCCEEEEEEECCSSSEEEEECTTCCCCCCTTCEEEEC
T ss_pred EECCCCCccceeeeeeeecCCCcEEEEecCCccCCcCCCEEEEE
Confidence 4555554 5555665552 22 144556555679999999873
No 168
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=37.26 E-value=19 Score=26.02 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
|.|||+-+. -..+.++.||+|++-.
T Consensus 116 V~VNG~~V~---~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 116 ILVNGRIVD---IPSYRCKPQDTIMARD 140 (201)
T ss_dssp EEETTEECC---CTTCBCCTTEEEEECS
T ss_pred EEeCCEEEe---ecceecCCCCEEEEcc
Confidence 788998653 3467899999998853
No 169
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structur comparisons, virus-viral protein complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=36.61 E-value=22 Score=29.96 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.9
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEeeccCC
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFISTLHG 95 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~vaG 95 (96)
.|+=+|-++|++||+- .|-+.||.|.|+.-+-|
T Consensus 218 ~~~~~~~ldg~~irl~----~pc~~gd~v~i~ty~dg 250 (602)
T 2fl8_A 218 NEGELVPLDGFNIRLR----QPCNIGDTVQIETFMDG 250 (602)
T ss_pred CCCceeeccCceeeec----CccccCCEEEEEEeecc
Confidence 4577899999999964 69999999999987655
No 170
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=36.34 E-value=74 Score=19.51 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=37.0
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
.+.+.+......||.+|-+.|.+... ..+.+|+. .|+ +|-+++ .| .++.+++|+.|.++-...
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~---tL--~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF-AGK------ILKDQD---TL--SQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE-TTE------EECTTC---CT--GGGTCCTTCEEEEEECCS
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcC---cH--HHcCCCCCCEEEEEEcCC
Confidence 34455555558999999999988763 22333332 232 222222 23 245789999998876543
No 171
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=35.16 E-value=8.5 Score=28.78 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=0.6
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccCC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLHG 95 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~vaG 95 (96)
.++|.+.-.....++.|+++.+++.+-. ...+..+-+|+.|. +.+|| ++|||.|.++-.--|
T Consensus 30 GseV~FKIKrtTpL~KLM~AYcERqGLs-----------~~siRFLFDGqRI~---dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 30 SSEIFFKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQ---ADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEccCChHHHHHHHHHHHhCCC-----------ccceEEEECCEecC---CCCCHHHcCCCCCCEEEEEecccC
Confidence 3455555555666777777666665321 12344555666654 34454 999999999887766
Q ss_pred C
Q psy9168 96 G 96 (96)
Q Consensus 96 G 96 (96)
|
T Consensus 96 G 96 (227)
T 3v7o_A 96 G 96 (227)
T ss_dssp C
T ss_pred C
Confidence 6
No 172
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=35.08 E-value=18 Score=25.51 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=18.2
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|.|||+-+. ..+++|+.||+|.+-
T Consensus 30 V~VNG~~v~---~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 30 VTVDGEIVR---NAAFKLLPEHDVAYD 53 (234)
T ss_dssp EEETTEECC---CTTCEECTTCCEEET
T ss_pred EEECCEEeC---CCCCCCCCCCEEEEe
Confidence 678998653 236889999999874
No 173
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=34.78 E-value=15 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=21.1
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEeeccC
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFISTLH 94 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~iiP~va 94 (96)
+.|||.. +-.+....|++||.+.|+|-.|
T Consensus 72 ~~vng~~--L~k~~~~~L~~GD~LeLl~g~y 100 (143)
T 1yj5_C 72 STVGVHE--LKPGLSGSLSLGDVLYLVNGLY 100 (143)
T ss_dssp CEETTEE--CCTTCEEEECTTCEEESSSSCS
T ss_pred cEECCEE--ecCCCEEEecCCCEEEEecCCc
Confidence 3567643 4467788999999999887543
No 174
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=34.63 E-value=22 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred ccceEEEEcCcCcccc---CCcccccCCCC
Q psy9168 59 RPGILVLINEADWELY---GELTYELKEND 85 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L---~GldT~L~dgD 85 (96)
||.+.|.|||+-++.| +-.+|.|++-+
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESSCC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcCcc
Confidence 7889999999998876 44446666543
No 175
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=34.31 E-value=15 Score=23.89 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=23.0
Q ss_pred CCcccc-ceEEEEcCcCccccC--CcccccC---CCCEEEEe
Q psy9168 55 GDSVRP-GILVLINEADWELYG--ELTYELK---ENDTIMFI 90 (96)
Q Consensus 55 ~g~lr~-~V~VlVNg~Di~~L~--GldT~L~---dgD~V~ii 90 (96)
.+.|++ .+++-|||++++-+. ..-..|+ .|+.|.+.
T Consensus 47 ~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~ 88 (113)
T 3soe_A 47 CQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88 (113)
T ss_dssp STTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 455776 499999999987542 1222333 47777764
No 176
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=33.89 E-value=21 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=18.5
Q ss_pred ccceEEEEcCcCcccc---CCcccccCC
Q psy9168 59 RPGILVLINEADWELY---GELTYELKE 83 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L---~GldT~L~d 83 (96)
||.+.|.|||+-++.| +-.+|.|++
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE 35 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec
Confidence 7899999999998865 334455554
No 177
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=33.81 E-value=37 Score=20.47 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=22.3
Q ss_pred EEEEcC---c-CccccCCcccccCCCCEEEEee
Q psy9168 63 LVLINE---A-DWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 63 ~VlVNg---~-Di~~L~GldT~L~dgD~V~iiP 91 (96)
.|.++| . .|....-.+.+|+.|+.|.++-
T Consensus 38 ~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~ 70 (84)
T 2k14_A 38 EVVIEGIGGTISKSAVSFDNQQISYGTTVLVVD 70 (84)
T ss_dssp EEEESCTTSCCCEEEEETTSCCBCSSCEEEEEE
T ss_pred EEEEeeECccEEEEEEeCCCCccCCCCEEEEEE
Confidence 488899 7 8987643345699999999874
No 178
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=33.32 E-value=30 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.9
Q ss_pred eEEEEcCcCccccCCc-ccccCCCCEEEEee
Q psy9168 62 ILVLINEADWELYGEL-TYELKENDTIMFIS 91 (96)
Q Consensus 62 V~VlVNg~Di~~L~Gl-dT~L~dgD~V~iiP 91 (96)
=.|.++|..|+...-. +..++.|+.|.++-
T Consensus 40 G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 40 GQVRLDGSIWSARSMDPTHTFAEGEIVSVID 70 (82)
T ss_dssp CEEEETTEEEEEEESSTTCCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEECCCCCccCCCCEEEEEE
Confidence 4588899999976421 25799999999874
No 179
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=32.78 E-value=29 Score=22.27 Aligned_cols=22 Identities=14% Similarity=0.455 Sum_probs=17.9
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
+.++++. ..|++++|+.|+++.
T Consensus 7 ~~l~v~~--~~TL~~lid~L~~~p 28 (98)
T 1y8x_B 7 QNIQFSP--SAKLQEVLDYLTNSA 28 (98)
T ss_dssp CCEECCT--TCBHHHHHHHHHHCT
T ss_pred EEEEECC--chhHHHHHHHHHhCh
Confidence 4567766 789999999999953
No 180
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.42 E-value=70 Score=18.03 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEeec
Q psy9168 28 YLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 28 ~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
....||.+|-+.+.+...- .+.+|+. .|+ .|-++ ..|. ++.+++|+.|.++..
T Consensus 22 ~~~~tv~~lK~~i~~~~gip~~~qrL~~-~g~------~L~d~---~tL~--~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 22 SRLTKVEELRRKIQELFHVEPGLQRLFY-RGK------QMEDG---HTLF--DYEVRLNDTIQLLVR 76 (78)
T ss_dssp CTTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTT---CBTT--TTTCCTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCC---CCHH--HcCCCCCCEEEEEEe
Confidence 3479999999999887642 2333332 222 11122 2232 467889999988754
No 181
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=32.02 E-value=23 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=22.2
Q ss_pred EEEEcCcCccccCC---------cccccCCCCEEEEeec
Q psy9168 63 LVLINEADWELYGE---------LTYELKENDTIMFIST 92 (96)
Q Consensus 63 ~VlVNg~Di~~L~G---------ldT~L~dgD~V~iiP~ 92 (96)
-|+|||+....+|. ++.+++.||+|.||-.
T Consensus 298 ~v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 336 (371)
T 3e5p_A 298 TVLVNGKRCEIVGRVCMDQCMIRLAEEVPVGPVVTLVGK 336 (371)
T ss_dssp EEESSSCEEEEESCCCSSCEEEEESSCCCSCCEEEEEEE
T ss_pred eEEECCEEeEEeceecccEEEEECCCCCCCCCEEEEEcC
Confidence 38899998777764 1224788999999853
No 182
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.23 E-value=38 Score=21.03 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=34.4
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC--CCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL--TERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~--~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.+++.+......||.+|-+.|.+... ..+.+|+. .|+ +|-++ ..| .++.+++|+.|.++-
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~---~tL--~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-SGR------PLTDK---MKF--EELKIPKDYVVQVIV 94 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-TTE------ECCTT---SHH--HHCCCSSSCEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCC---CcH--HHcCCCCCCEEEEEE
Confidence 44554555558999999999988764 22333332 221 11121 122 245688999988764
No 183
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=30.92 E-value=33 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=22.9
Q ss_pred eEEEEcCcCccccCC----------cccccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGE----------LTYELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~G----------ldT~L~dgD~V~iiP~ 92 (96)
--|+|||+....+|. .+ .++.||+|.||-.
T Consensus 301 ~~v~i~G~~~pivGrv~MD~~~vDvt~-~~~~GD~V~l~G~ 340 (395)
T 3hur_A 301 SSVIINGKRMPIIGRITMDQTMVKLDR-KYPIGTRVTLIGK 340 (395)
T ss_dssp EEEEETTEEEEBCSCCCSSCEEEECSS-CCCTTCEEEEEES
T ss_pred CeEEECCEEEEEECceeccEEEEECCC-CCCCCCEEEEEcC
Confidence 458999998887764 12 5788999999854
No 184
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=30.76 E-value=23 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=17.8
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|.|||+-+. -.+++|+.||+|.+.
T Consensus 29 V~VNG~~v~---~~~~~v~~gD~I~v~ 52 (243)
T 1vio_A 29 VKINGEIVK---SGSVQISQEDEIYFE 52 (243)
T ss_dssp EEETTEECC---CTTCEECTTSCEEET
T ss_pred EEECCEEeC---CCCCCcCCCCEEEEe
Confidence 678998653 236789999988763
No 185
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=30.50 E-value=1.1e+02 Score=20.15 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=20.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
..++-..++. ..||++++..|+.+.
T Consensus 47 Ldk~KflVp~--~~tv~qf~~~iRkrl 71 (119)
T 3h9d_A 47 LDRCKFLVPS--DLTVGQFVSVLRKRV 71 (119)
T ss_dssp CSSCEEEEET--TCBHHHHHHHHHHHH
T ss_pred cCcceEEcCC--CCCHHHHHHHHHHHh
Confidence 4456667777 899999999999987
No 186
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=29.98 E-value=27 Score=27.12 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=14.3
Q ss_pred ccCCCCEEEEeeccCC
Q psy9168 80 ELKENDTIMFISTLHG 95 (96)
Q Consensus 80 ~L~dgD~V~iiP~vaG 95 (96)
+|+.||.|.|++|-+|
T Consensus 39 ~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCTTCEEEEECSSCC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 6999999999999765
No 187
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=28.87 E-value=1.1e+02 Score=20.13 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=20.6
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
..++-..++. ..||++++..|+.+.
T Consensus 46 ldk~KflVp~--~~tv~qf~~~iRkrl 70 (118)
T 3rui_B 46 IDKRKYLVPA--DLTVGQFVYVIRKRI 70 (118)
T ss_dssp CSCCEEEEET--TSBHHHHHHHHHHHT
T ss_pred cccceEEcCC--CCCHHHHHHHHHHHh
Confidence 3466667777 899999999999987
No 188
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=28.85 E-value=38 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=22.9
Q ss_pred eEEEEcCcCccccCCc--c-c------ccCCCCEEEEeec
Q psy9168 62 ILVLINEADWELYGEL--T-Y------ELKENDTIMFIST 92 (96)
Q Consensus 62 V~VlVNg~Di~~L~Gl--d-T------~L~dgD~V~iiP~ 92 (96)
--|+|||+....+|.. | + .++.||+|.||-.
T Consensus 295 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~Gd~V~l~G~ 334 (382)
T 4a3q_A 295 SFVNVNGHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDN 334 (382)
T ss_dssp CEEEETTEEEEBCSCCCSSCEEEEECTTCCTTCEEEEECS
T ss_pred CEEEECCEEEEEeeeeeccEEEEECCCCCCCCCEEEEEeC
Confidence 4689999988777641 1 0 5788999999854
No 189
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=28.31 E-value=27 Score=26.11 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.5
Q ss_pred EEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 64 VLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 64 VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
|.|||+-+ ...+.|++||+|.+-
T Consensus 33 V~VNG~~v----~~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 33 VFLNGKRA----TIGDQVKPGDVVKVN 55 (290)
T ss_dssp EEETTEEC----CTTCEECTTCCEEET
T ss_pred EEECCEEc----cCCcCcCCCCEEEec
Confidence 67899865 245789999998873
No 190
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=27.92 E-value=1.2e+02 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=21.9
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
+.++.+...+..|.+|++.|.+..+..
T Consensus 175 ~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 175 PIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 456777777899999999999877644
No 191
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=27.73 E-value=91 Score=19.75 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=20.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 18 FPKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 18 ~~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
..++...++. ..|+++++..|+++.
T Consensus 27 l~k~KflV~~--~~t~~~~~~~lRkrL 51 (96)
T 1wz3_A 27 LKQSKFKVSG--SDKFANVIDFLRRQL 51 (96)
T ss_dssp CSCCEEEEET--TSBTHHHHHHHHHHH
T ss_pred ccccEEEeCC--CCcHHHHHHHHHHhc
Confidence 3466677777 889999999999987
No 192
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=27.63 E-value=89 Score=23.78 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHcCCCCccceecCCcccc--ceE
Q psy9168 30 TGTIKGLIEWLKLNKLTERPELFVQGDSVRP--GIL 63 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~--~V~ 63 (96)
..+..++.+.|+...|.+...+|.++-.++| ||+
T Consensus 59 si~k~eIn~~Lrk~d~~lg~tlFv~nssIkPDGGIi 94 (276)
T 1cl8_A 59 SIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIV 94 (276)
T ss_dssp CEEHHHHHHHHHHHCTTSSCCCSSTTCEECCTTCEE
T ss_pred hhhHHHHHHHHHhhCcccccccccccccccCCCcEE
Confidence 5688999999999999998899998877776 555
No 193
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.26 E-value=1.2e+02 Score=20.24 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
.|+-..++. ..||++++..|+.+.
T Consensus 53 dK~KflVp~--~~tv~qf~~~IRkrl 76 (125)
T 3m95_A 53 DKKKYLVPS--DLTVGQFYFLIRKRI 76 (125)
T ss_dssp SCCEEEEET--TSBHHHHHHHHHHHT
T ss_pred cCCEEEcCC--CCEeeeehhhhHhhc
Confidence 356667777 899999999999987
No 194
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=27.04 E-value=13 Score=29.22 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccc----cCCCCEEEEeeccCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYE----LKENDTIMFISTLHGG 96 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~----L~dgD~V~iiP~vaGG 96 (96)
+++.+.-....+++.|+++.+++.+-. ...+..+-+|+.|. +.+|| ++|||+|.++..--||
T Consensus 31 ~~v~FkIk~~t~l~kLm~aY~~r~G~~-----------~~~~rFlFdG~rI~---~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 31 SEIFFKIKKTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQ---ADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEecCChHHHHHHHHHHHhCCC-----------cceEEEEECCeECC---CCCChHHcCCCccchhhhhhccCch
Confidence 445555444566666666666655311 22455666777664 34555 9999999998877665
No 195
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=26.90 E-value=34 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=20.5
Q ss_pred ccccceEEEEcCcCcccc---CCcccccCCC
Q psy9168 57 SVRPGILVLINEADWELY---GELTYELKEN 84 (96)
Q Consensus 57 ~lr~~V~VlVNg~Di~~L---~GldT~L~dg 84 (96)
.=||.+.+.|||+-+++| +-.+|.|++-
T Consensus 20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp CCSSEEEEEETTEEEEEEECTTCSSCEECSC
T ss_pred cCCCEEEEEECCEEEEEEEeCCCCeEEEccc
Confidence 458999999999998876 3344666553
No 196
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.19 E-value=1.2e+02 Score=19.32 Aligned_cols=55 Identities=9% Similarity=-0.141 Sum_probs=31.7
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
+++++. ..||.+|=+.+.++..- ...+|. -.|+ +|-+++ -| .++.|++|+.|.++
T Consensus 33 ~lev~~--~~TV~~lK~kI~~k~gip~~qQrLI-~~GK------iL~D~~---TL--~~y~I~~gsti~vl 89 (100)
T 1wju_A 33 LLETRL--HITGRELRSKIAETFGLQENYIKIV-INKK------QLQLGK---TL--EEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEEES--SSBHHHHHHHHHHHTTCCSTTCEEE-ETTE------ECCTTS---BH--HHHTCCSSEEEEEE
T ss_pred EEEeCC--cCHHHHHHHHHHHHHCcCHHHeEEE-eCCe------ECCCCC---cH--HHcCCCCCCEEEEE
Confidence 445555 89999999999888742 222232 1232 221221 12 25678888888655
No 197
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.14 E-value=95 Score=19.76 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=32.3
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCC--CCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLT--ERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~--~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
+.+.++.....||++|-+.|.++..- .+.+|.. .|+ +|-|+ +-| .++.+++|+.|.+.
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~Gk------~L~D~---~TL--~dygI~~gstlhL~ 98 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-WYT------IFKDH---VSL--GDYEIHDGMNLELY 98 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCSS---CBH--HHHTCCTTEEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCC---CCH--HHcCCCCCCEEEEE
Confidence 44444444489999999999887642 2333332 232 22222 222 24667888877653
No 198
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=26.08 E-value=59 Score=18.95 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=18.2
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
.+++.+......||.+|-+.+.+...
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~g 52 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVS 52 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 34444444448999999999987753
No 199
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=25.95 E-value=1.2e+02 Score=22.49 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=39.7
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcCCC------CccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKLTE------RPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~~~------~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
+|.+-++. ..||.|++..+++++++. .-.||..++..+.++-+ -+++- |+ .+.+.+|+.+.+-|
T Consensus 14 ~~~~~f~~--~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~---l~--~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 14 VKTMQFEP--STMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKA---LD--YYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEECT--TCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSB---GG--GGTCCTTCEEEEEE
T ss_pred eEEEEECC--CCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCC---HH--HhCCCCCceeeccC
Confidence 35555555 899999999999999753 22566655544444432 23332 21 24677777776654
No 200
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=25.34 E-value=50 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred cceEEEEcCcCccccCCc-------c-c----ccCCCCEEEEee
Q psy9168 60 PGILVLINEADWELYGEL-------T-Y----ELKENDTIMFIS 91 (96)
Q Consensus 60 ~~V~VlVNg~Di~~L~Gl-------d-T----~L~dgD~V~iiP 91 (96)
..--|+|||+....+|-. | | .++.||+|.||-
T Consensus 301 ~~~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~~~~Gd~v~l~G 344 (376)
T 3kw3_A 301 NKGTVYFNGHKLPIVGHISMDSIIVDATDLDKKPQRGDWVELIG 344 (376)
T ss_dssp TTCEEEETTEEEEBCSCCCSSCEEEECTTCSSCCCTTCEEEEEB
T ss_pred CCceEEECCEEEEEeCeeccceEEEEcCCCcccCCCCCEEEEEC
Confidence 345688999988877631 1 2 267799999984
No 201
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=24.81 E-value=39 Score=21.15 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=21.6
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
++..+.|+=.-..+|..+.++.||.+.|-|
T Consensus 41 i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p 70 (164)
T 2arc_A 41 LNLTIRGQGVVKNQGREFVCRPGDILLFPP 70 (164)
T ss_dssp EEEEEEECEEEEETTEEEEECTTCEEEECT
T ss_pred EEEEEEeEEEEEECCEEEEecCCeEEEEcC
Confidence 445556665555688888999999887766
No 202
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A
Probab=24.19 E-value=1.2e+02 Score=22.13 Aligned_cols=54 Identities=20% Similarity=0.024 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCC--cccccCCCCEEEE
Q psy9168 29 LTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGE--LTYELKENDTIMF 89 (96)
Q Consensus 29 ~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~G--ldT~L~dgD~V~i 89 (96)
.|.|-.||-+.+.+..-.. ++...=..++-+|+.-.-.... .+.+|++||.|.|
T Consensus 26 pG~te~el~~~~~~~~~~~-------G~~~~fp~~vs~n~~~~H~~p~~~~~~~L~~GDiv~i 81 (295)
T 1xgs_A 26 PGMLLLELAESIEKMIMEL-------GGKPAFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKI 81 (295)
T ss_dssp TTCBHHHHHHHHHHHHHHT-------TCEESSCCEEEETTEEECCCCCTTCCCBCCTTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc-------CCCCCCCcEEeeCCccccccCCCCCCccccCCCEEEE
Confidence 3677777766665543211 1111111466788774322222 3689999999976
No 203
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=24.01 E-value=51 Score=25.11 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred cc-eEEEEcCcCccccCCc-------c-c---ccCCCCEEEEeec
Q psy9168 60 PG-ILVLINEADWELYGEL-------T-Y---ELKENDTIMFIST 92 (96)
Q Consensus 60 ~~-V~VlVNg~Di~~L~Gl-------d-T---~L~dgD~V~iiP~ 92 (96)
+. --|+|||+....+|.. | | .++.||+|.||-.
T Consensus 294 ~~~~~v~i~g~~~pivGrv~MD~~~vDvt~~~~~~~Gd~v~l~G~ 338 (374)
T 4ecl_A 294 CGNSYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGK 338 (374)
T ss_dssp TTSCEEEETTEEEEEESCCCSSCEEEECTTCSSCCTTCEEEEEEE
T ss_pred CCceEEEECCEEEEEEChhhhceEEEEcCCCCCCCCCCEEEEEeC
Confidence 44 6799999988777651 1 1 4688999999853
No 204
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=23.94 E-value=59 Score=21.95 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=18.1
Q ss_pred EcCcCccccCCcccccCCCCEEEEeec
Q psy9168 66 INEADWELYGELTYELKENDTIMFIST 92 (96)
Q Consensus 66 VNg~Di~~L~GldT~L~dgD~V~iiP~ 92 (96)
-+|+-+ .-..+|.|+.||.+.++-+
T Consensus 180 R~~~~~--~p~~~~~l~~gD~l~v~g~ 204 (218)
T 3l4b_C 180 RGGVLV--VPRGDTEILSGDKLYVIVS 204 (218)
T ss_dssp ESSCEE--CCCTTCBCCTTEEEEEEEE
T ss_pred ECCEEE--cCCCCCEECCCCEEEEEEC
Confidence 344443 3566899999999998753
No 205
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=23.72 E-value=9.6 Score=27.72 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.9
Q ss_pred EEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 63 LVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 63 ~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.|+|||+-+. -..+.++.||+|++-
T Consensus 121 ~V~VNG~~V~---~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 121 AIMVNGRVVN---IASYQVSPNDVVSIR 145 (205)
T ss_dssp CCBSSSSBCC---CTTCBCCTTBCCBCC
T ss_pred CEEECCEEEc---cCCcCcCCCCEEEec
Confidence 3788998763 246799999998764
No 206
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=23.50 E-value=62 Score=18.34 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=19.6
Q ss_pred eEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 62 ILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 62 V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
+...+.|+=.-.+++....|+.||.+.|=
T Consensus 52 ~~~v~~G~~~~~~~~~~~~l~~Gd~~~ip 80 (105)
T 1v70_A 52 VYYALEGEVVVRVGEEEALLAPGMAAFAP 80 (105)
T ss_dssp EEEEEESCEEEEETTEEEEECTTCEEEEC
T ss_pred EEEEEeCEEEEEECCEEEEeCCCCEEEEC
Confidence 45566666444456777889999987643
No 207
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=23.45 E-value=76 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.5
Q ss_pred ccceEEEEcCcCccccCCcccccCCCCEEEEeecc
Q psy9168 59 RPGILVLINEADWELYGELTYELKENDTIMFISTL 93 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP~v 93 (96)
...+.|.++|+...+--|..-.|++|..|+|.|-+
T Consensus 154 ~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~ 188 (246)
T 3kmh_A 154 DSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGL 188 (246)
T ss_dssp CSCEEEEETTEEEEECTTCEEEECTTCEEEECTTE
T ss_pred CCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCC
Confidence 35788999999888888888899999999998853
No 208
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=23.43 E-value=1.7e+02 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=16.7
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCC
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~ 47 (96)
+.++++...+..|.+|++.|.+..+..
T Consensus 173 ~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 173 PIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp CEEEC------CHHHHHHHHHHHSCCC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 456777777889999999999877643
No 209
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=23.36 E-value=27 Score=20.56 Aligned_cols=32 Identities=6% Similarity=0.262 Sum_probs=19.3
Q ss_pred cc-cceEEEEcCcCccc--cCCcccccCC-CCEEEE
Q psy9168 58 VR-PGILVLINEADWEL--YGELTYELKE-NDTIMF 89 (96)
Q Consensus 58 lr-~~V~VlVNg~Di~~--L~GldT~L~d-gD~V~i 89 (96)
|+ -.+++-|||+++.. ...+...|+. |+.|.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44 36889999999872 2222233433 677665
No 210
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.28 E-value=43 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=13.3
Q ss_pred cCCcccccCCCCEEEEee
Q psy9168 74 YGELTYELKENDTIMFIS 91 (96)
Q Consensus 74 L~GldT~L~dgD~V~iiP 91 (96)
.+---+.|+|||.|++|=
T Consensus 70 kDanGn~L~dGDsVtvIK 87 (138)
T 2akl_A 70 KDSVGNVLQDGDTITVIK 87 (138)
T ss_dssp BCTTSCBCCTTCEEECCS
T ss_pred EcCCCCCccCCCeEEEEe
Confidence 344457899999998873
No 211
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.62 E-value=18 Score=25.91 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=0.0
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
+++.++.....||.+|-+.|.+..
T Consensus 11 ktitLeV~~sdTV~~LK~kI~~ke 34 (189)
T 2xzm_9 11 ETKIYTLEQGTSVLDLKSQISQDM 34 (189)
T ss_dssp ------------------------
T ss_pred CEEEEEECCcChHHHHHHHHHHHh
Confidence 444444545788888888777653
No 212
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=22.49 E-value=1.1e+02 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.5
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHcC
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNKL 45 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~~ 45 (96)
.|.|++.+ ..|++++|+.|.++|-
T Consensus 88 ~k~v~VsS--~tTt~eVI~~LL~KFk 111 (163)
T 3ddc_B 88 IKQMHISS--TTTVSEVIQGLLDKFM 111 (163)
T ss_dssp EEEEEEET--TCCHHHHHHHHHHHTT
T ss_pred eEEEEEcc--CCcHHHHHHHHHHHhc
Confidence 57789988 8999999999999994
No 213
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=22.40 E-value=1.5e+02 Score=19.12 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=19.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 19 PKPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 19 ~~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
.++-..++. ..||++++..|+.+.
T Consensus 45 ~k~KflVp~--~~tv~~f~~~iRk~l 68 (117)
T 1eo6_A 45 DKRKYLVPS--DITVAQFMWIIRKRI 68 (117)
T ss_dssp SCCEEEEET--TSBHHHHHHHHHHHH
T ss_pred cceEEEcCC--CCCHHHHHHhhHHhh
Confidence 355556777 789999999999886
No 214
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=22.36 E-value=82 Score=21.77 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.5
Q ss_pred cCCcccccCCCCEEEEeec
Q psy9168 74 YGELTYELKENDTIMFIST 92 (96)
Q Consensus 74 L~GldT~L~dgD~V~iiP~ 92 (96)
.-..+|.|+.||.|.++-+
T Consensus 164 ~P~~dt~L~~GD~Liv~g~ 182 (205)
T 1vct_A 164 GPNENFKIRAGDVLIGRGT 182 (205)
T ss_dssp SCCTTCBCCTTCEEEEEEC
T ss_pred CCCCCCEECCCCEEEEEEC
Confidence 4566899999999998753
No 215
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=22.20 E-value=52 Score=20.28 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=20.5
Q ss_pred ceEEEEcCcCccccCCcc--cccCCCCEEEEe
Q psy9168 61 GILVLINEADWELYGELT--YELKENDTIMFI 90 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~Gld--T~L~dgD~V~ii 90 (96)
.+.+.+.|+=.-.+++.. ..|+.||.|.|=
T Consensus 55 E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ip 86 (112)
T 2opk_A 55 EWVMVVSGSAGIECEGDTAPRVMRPGDWLHVP 86 (112)
T ss_dssp EEEEEEESCEEEEETTCSSCEEECTTEEEEEC
T ss_pred EEEEEEeCeEEEEECCEEEEEEECCCCEEEEC
Confidence 455666776544456666 789999988763
No 216
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=22.09 E-value=47 Score=20.84 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHcCCC
Q psy9168 30 TGTIKGLIEWLKLNKLTE 47 (96)
Q Consensus 30 g~TV~dLL~~L~~~~~~~ 47 (96)
..||.++++.|.++|+..
T Consensus 55 ~rtv~eIv~~L~~~y~~~ 72 (95)
T 3g2b_A 55 TQSLAQIAQTLAAEFDAD 72 (95)
T ss_dssp SSCHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 579999999999999754
No 217
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=21.94 E-value=25 Score=23.17 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=14.8
Q ss_pred ceeec-CccCC-CCCccCCCCc
Q psy9168 2 TWTFP-LEKNH-TPYFDSFPKP 21 (96)
Q Consensus 2 ~~~~~-~~~~~-~~~~~~~~~~ 21 (96)
||++| |++.. .+||-+||-+
T Consensus 95 tf~~~~l~~G~~Y~f~C~~PgH 116 (128)
T 2iaa_C 95 TFDVSKLKEGEDYAFFCSFPGH 116 (128)
T ss_dssp EEESSCCCTTCCEEEECCSTTC
T ss_pred EEeccccCCCceEEEEECCCCh
Confidence 56666 56664 7999999865
No 218
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=21.82 E-value=1.5e+02 Score=18.37 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=28.3
Q ss_pred eEEecCCCCCCHHHHHHHHHHHcCCC--CccceecCCccccceEEEEcCcCcc
Q psy9168 22 TVLFSSYLTGTIKGLIEWLKLNKLTE--RPELFVQGDSVRPGILVLINEADWE 72 (96)
Q Consensus 22 ~ve~~~~~g~TV~dLL~~L~~~~~~~--~~~lf~~~g~lr~~V~VlVNg~Di~ 72 (96)
+|-+....+++..+|.+.|+++.+-. .-.|...+..=+..+ +.|+.|.+
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v--i~~d~dl~ 65 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV--PLSEDSMK 65 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE--ECCTTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee--ccChHHHH
Confidence 34333444999999999999999632 222322222111223 67777754
No 219
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=21.26 E-value=23 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=17.2
Q ss_pred ccceEEEEcCcCcccc---CCcccccCC
Q psy9168 59 RPGILVLINEADWELY---GELTYELKE 83 (96)
Q Consensus 59 r~~V~VlVNg~Di~~L---~GldT~L~d 83 (96)
||.+ |.|||+-++.| +-.+|.|++
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNR 40 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEG
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcc
Confidence 7888 99999998865 333455554
No 220
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=20.98 E-value=1.7e+02 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.080 Sum_probs=18.9
Q ss_pred CceEEecCCCCCCHHHHHHHHHHHc
Q psy9168 20 KPTVLFSSYLTGTIKGLIEWLKLNK 44 (96)
Q Consensus 20 ~~~ve~~~~~g~TV~dLL~~L~~~~ 44 (96)
++-..++. ..||++++..|+.+.
T Consensus 45 k~KflVp~--~~tv~~~~~~iRk~l 67 (110)
T 2r2q_A 45 KRKYLVPS--DLTVGQFYFLIRKRI 67 (110)
T ss_dssp CCEEEEET--TCBHHHHHHHHHHHT
T ss_pred eeEEEeCC--CCcHHHHHHHHHHHh
Confidence 55567777 789999999999886
No 221
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.96 E-value=93 Score=19.01 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=28.4
Q ss_pred EEecCCCCCCHHHHHHHHHHHcCCC-----Cc----cceecCCccccceEEEEcCcCccc
Q psy9168 23 VLFSSYLTGTIKGLIEWLKLNKLTE-----RP----ELFVQGDSVRPGILVLINEADWEL 73 (96)
Q Consensus 23 ve~~~~~g~TV~dLL~~L~~~~~~~-----~~----~lf~~~g~lr~~V~VlVNg~Di~~ 73 (96)
+.++. .++..+|++.+.+++.-. +. +.=+++| ..+.+.|+.||..
T Consensus 6 i~V~~--~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdG----D~Vti~sddDl~~ 59 (77)
T 1pqs_A 6 LLVEK--VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDG----DFVVLGSDEDWNV 59 (77)
T ss_dssp EECTT--CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTT----EEEECCSTTHHHH
T ss_pred EEeCC--CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCC----CEEEEcCHHHHHH
Confidence 45555 899999999999998622 01 1112333 4556667777654
No 222
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=20.78 E-value=60 Score=18.91 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEe
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFI 90 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~ii 90 (96)
.+.+.+.|+=.-.+++....|+.||.+.|=
T Consensus 46 e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~ 75 (113)
T 2gu9_A 46 QWLFVVDGAGEAIVDGHTQALQAGSLIAIE 75 (113)
T ss_dssp EEEEEEECCEEEEETTEEEEECTTEEEEEC
T ss_pred EEEEEEeCEEEEEECCEEEEeCCCCEEEEC
Confidence 355556666444456667788899877653
No 223
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=20.70 E-value=65 Score=26.46 Aligned_cols=52 Identities=6% Similarity=-0.034 Sum_probs=36.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHHHcCCCCccceecCCccccceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 21 PTVLFSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 21 ~~ve~~~~~g~TV~dLL~~L~~~~~~~~~~lf~~~g~lr~~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
++.+++. +.|+.|+.+.+..... +.-|...|||+-|+ ++++|..+..|.++.
T Consensus 10 ~~~~~~~--~~t~~~~a~~i~~~~~-------------~~~~~~~vng~~~d----l~~~l~~d~~~~~~~ 61 (642)
T 1qf6_A 10 SQRHYDH--AVSPMDVALDIGPGLA-------------KACIAGRVNGELVD----ACDLIENDAQLSIIT 61 (642)
T ss_dssp CEEECSS--CBCHHHHHHHHCHHHH-------------HHCSEEEETTEEEE----TTSCBCSCEECCEEC
T ss_pred CeEEecC--CCCHHHHHHHhchhhh-------------hheEEEEECCEEec----cccccCCCceEEEee
Confidence 4456666 8999999988865331 22355678998765 568898888887663
No 224
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.69 E-value=52 Score=20.06 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=21.4
Q ss_pred ceEEEEcCcCccccCCcccccCCCCEEEEee
Q psy9168 61 GILVLINEADWELYGELTYELKENDTIMFIS 91 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~GldT~L~dgD~V~iiP 91 (96)
.++..+.|+=.-..+|....|+.||.+.|=|
T Consensus 56 Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 56 ELFIVIQGNAIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEEEESEEEEEETTEEEEEETTCEEEECT
T ss_pred EEEEEEeCEEEEEECCEEEEECCCcEEEECC
Confidence 4555666765445577788999999877644
No 225
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=20.59 E-value=76 Score=20.45 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.6
Q ss_pred cCCcccccCCCCEEEEeec
Q psy9168 74 YGELTYELKENDTIMFIST 92 (96)
Q Consensus 74 L~GldT~L~dgD~V~iiP~ 92 (96)
-+.+|-.|+.||.|+++.-
T Consensus 29 tq~~dl~l~~GdlVAVl~k 47 (92)
T 1ug1_A 29 AQDLDVSLLEGDLVGVIKK 47 (92)
T ss_dssp CSSSCCCCCTTCEEEEEES
T ss_pred CCceeeeecCCCEEEEEec
Confidence 4567789999999999864
No 226
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=20.58 E-value=55 Score=21.25 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHH
Q psy9168 30 TGTIKGLIEWLKL 42 (96)
Q Consensus 30 g~TV~dLL~~L~~ 42 (96)
++||++|++.|.+
T Consensus 74 n~TV~~L~~lL~k 86 (108)
T 1d2z_A 74 NHTVQTLFALFKK 86 (108)
T ss_dssp CCBHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7999999999975
No 227
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=20.11 E-value=47 Score=20.57 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceEEEEcCcCccccC-CcccccCCCCEEEEee
Q psy9168 61 GILVLINEADWELYG-ELTYELKENDTIMFIS 91 (96)
Q Consensus 61 ~V~VlVNg~Di~~L~-GldT~L~dgD~V~iiP 91 (96)
.++..+.|+=.-..+ |....|+.||.+.|=|
T Consensus 51 E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 51 ETCYILEGKVEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEEEEEEEEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEEEeCEEEEEECCCCEEEECCCCEEEECC
Confidence 455556666433345 7788999999987644
Done!