RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9168
(96 letters)
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.3.3 PDB: 1xo3_A
Length = 114
Score = 96.2 bits (239), Expect = 1e-27
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
I+ L+ W+K N L ERPELF+QGDSVRPGILVLIN+ADWEL GEL Y+L++ D+I+FIS
Sbjct: 44 DIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103
Query: 92 TLHGG 96
TLHGG
Sbjct: 104 TLHGG 108
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein,
signaling protein; 1.44A {Saccharomyces cerevisiae}
PDB: 2pko_A 2ax5_A
Length = 99
Score = 91.5 bits (227), Expect = 5e-26
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 32 TIKGLIEWLKLNKLTERPE--LFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMF 89
T+ LI+ + + + +F++ DS+RPGI+ LIN+ DWEL GE Y L++ D I F
Sbjct: 33 TVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISF 92
Query: 90 ISTLHGG 96
STLHGG
Sbjct: 93 TSTLHGG 99
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma
brucei}
Length = 110
Score = 86.9 bits (215), Expect = 4e-24
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQ--GDSVRPGILVLINEADWELYGELTYELKENDTIMF 89
+ GL++ LK N + ERP+L V G ++RPGILVL+N D E+ G + Y L + DT+ F
Sbjct: 36 NLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEF 95
Query: 90 ISTLHGG 96
ISTLHGG
Sbjct: 96 ISTLHGG 102
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase;
NMR {Thermoplasma acidophilum} PDB: 2k22_A
Length = 90
Score = 50.5 bits (121), Expect = 5e-10
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
I L+E LK+ +E + G+++ +++L+N + L E+K++D I
Sbjct: 26 KISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85
Query: 92 TLHGG 96
+ GG
Sbjct: 86 PVAGG 90
>1v8c_A MOAD related protein; riken structural genomics/proteomics
initiative, RSGI, structural genomics, protein binding;
1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Length = 168
Score = 43.0 bits (101), Expect = 1e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
T+ ++E L + ELF +G+ + + V + D L+ L T+
Sbjct: 24 TVGEVLENLVRAYPALKEELF-EGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82
Query: 92 TLHGG 96
+ GG
Sbjct: 83 PVAGG 87
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein
complex, beta-grAsp fold, amino-acid biosynthesis; HET:
PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Length = 93
Score = 39.7 bits (93), Expect = 7e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 31 GTIKGLIEWLKLNKLTERPELFVQGD--SVRPGILVLINEADWELYGELTYELKENDTIM 88
T+ +I L+ N L + + + +N+ D G L + + D++
Sbjct: 26 DTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVT 85
Query: 89 FISTLHGG 96
+ + GG
Sbjct: 86 ILPAVAGG 93
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold,
protein binding, E1-like, SAMP activator, ELSA,
adenylation, ubiquitin; NMR {Methanosarcina
acetivorans}
Length = 99
Score = 38.6 bits (90), Expect = 2e-05
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 32 TIKGLIEWLK------LNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKEND 85
+ ++ L + E+ + + + I +LIN + L LK++D
Sbjct: 29 KVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSD 88
Query: 86 TIMFISTLHGG 96
I + + GG
Sbjct: 89 EIGILPPVSGG 99
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein,
protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Length = 89
Score = 37.7 bits (88), Expect = 5e-05
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
T+ ++ L +F + I VL N L D +
Sbjct: 29 TVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGE----AAALGEATAAGDELALFP 84
Query: 92 TLHGG 96
+ GG
Sbjct: 85 PVSGG 89
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 35.0 bits (81), Expect = 6e-04
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90
++ LIE +K + E+F +G + + +N Y ELK+ D +
Sbjct: 38 RVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR----YVSWDEELKDGDVVGVF 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.007
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 43/120 (35%)
Query: 7 LEKNHTPYFDSFPKPTVLF--------SSYLTGTIKGLIEWLKLNKLTERPE-------- 50
L+++ P+ + K + F S L + + L N ++ +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 51 ------LFVQGDSVRPGILVLINE--ADWEL-------------------YGELTYELKE 83
L V S+ I+ I WE G LT+ K+
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase,
MOAD, MOAE, transferase, molybdenum cofactor
biosynthesis; 2.00A {Staphylococcus aureus} PDB:
2qie_B*
Length = 77
Score = 26.0 bits (58), Expect = 0.94
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 14/59 (23%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90
T++ + L P++ V +NE + + + ++ NDT+ I
Sbjct: 27 TVQQFEDLLF----ERYPQIN------NKKFQVAVNEE----FVQKSDFIQPNDTVALI 71
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET:
FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB:
1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B*
1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B*
3g82_B* 3maa_B* 1cul_B*
Length = 220
Score = 24.9 bits (55), Expect = 4.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 9 KNHTPYFDSFPKPTVLFSS 27
KN Y S+ V+F+S
Sbjct: 3 KNEELYHQSYDCVCVMFAS 21
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase,
structural genomics, PSI, protein structure initiative;
NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB:
2h5m_A*
Length = 102
Score = 24.0 bits (52), Expect = 7.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 66 INEADWELYGELTYELKENDTIMFIST 92
I + + E+TY +N+ I T
Sbjct: 15 IGDDENNALAEITYRFVDNNEINIDHT 41
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG,
PSI-biology, structural genomics, midwest center for S
genomics, transferase; 1.90A {Helicobacter pylori}
Length = 74
Score = 23.5 bits (51), Expect = 7.8
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
+K L L+ E+ L + +N+ L L LK+ D I +
Sbjct: 22 DLKELRAILQ-----EKEGL----KEWLGVCAIALND---HLIDNLNTPLKDGDVISLLP 69
Query: 92 TLHGG 96
+ GG
Sbjct: 70 PVCGG 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.140 0.437
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,491,337
Number of extensions: 73652
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 23
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)