RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9168
         (96 letters)



>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 101

 Score = 72.6 bits (178), Expect = 4e-19
 Identities = 50/84 (59%), Positives = 60/84 (71%), Gaps = 1/84 (1%)

Query: 14  YFDSFPKPTVLFSSYLTG-TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWE 72
            FD   K  V          I+ L+ W+K N L ERPELF+QGDSVRPGILVLIN+ADWE
Sbjct: 18  LFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE 77

Query: 73  LYGELTYELKENDTIMFISTLHGG 96
           L GEL Y+L++ D+I+FISTLHGG
Sbjct: 78  LLGELDYQLQDQDSILFISTLHGG 101


>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 87

 Score = 38.4 bits (89), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 32 TIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFIS 91
          T+  ++E L         E   +G+ +   + V +   D      L+  L    T+    
Sbjct: 24 TVGEVLENLV-RAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82

Query: 92 TLHGG 96
           + GG
Sbjct: 83 PVAGG 87


>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD
          {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 23.7 bits (51), Expect = 2.8
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 31 GTIKGLIEWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYGELTYELKENDTIMFI 90
           T++ L + +          L          +L  +N+          + L + D + F 
Sbjct: 26 PTVEALRQHMAAQSDRWALALE------DGKLLAAVNQT----LVSFDHPLTDGDEVAFF 75

Query: 91 STLHGG 96
            + GG
Sbjct: 76 PPVTGG 81


>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 157

 Score = 23.9 bits (52), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 34  KGLIE-WLKLNKLTERPELFVQGDSVRP 60
           K L+E WLK +KL    EL   GD V+ 
Sbjct: 115 KQLLEKWLKEDKLECSEEL---GDLVKS 139


>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 72

 Score = 22.4 bits (48), Expect = 7.3
 Identities = 2/35 (5%), Positives = 15/35 (42%)

Query: 25 FSSYLTGTIKGLIEWLKLNKLTERPELFVQGDSVR 59
              +   +  +    +  ++ +  +++++G  +R
Sbjct: 32 AEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIR 66


>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 22.2 bits (47), Expect = 8.5
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 38 EWLKLNKLTERPELFVQGDSVRPGILVLINEADWELYG 75
          +WL   ++    + F  G     G+++ +N  D    G
Sbjct: 12 DWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALG 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,971
Number of extensions: 14960
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 10
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)