BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9169
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 330 bits (847), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 174/372 (46%), Positives = 238/372 (63%), Gaps = 18/372 (4%)
Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVI 64
R FKN GK EMRR+R E+NVELRKA KD+Q+ KRRN+ D ++E
Sbjct: 13 RLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR---- 68
Query: 65 EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V
Sbjct: 69 --NNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 125 LLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
L D +P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WA
Sbjct: 127 FLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPD 238
LGNI + +LAL+ P+ T +LRN+ W +SNLCRNKNPAP
Sbjct: 186 LGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 245
Query: 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
+ ++ LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL +
Sbjct: 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305
Query: 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358
E I+T ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG
Sbjct: 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365
Query: 359 NSRQIDHVIQEG 370
QI V+ G
Sbjct: 366 RQDQIQQVVNHG 377
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 112 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 172 ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 350
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS + A WA+ N
Sbjct: 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ A WA+TN S GT EQ + +++
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 422 IEPLMNLLSAKDTKIIQVILDAISNI 447
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 246/420 (58%), Gaps = 29/420 (6%)
Query: 10 RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNI----DQLDEIEEENVTV- 63
R+ +FKN G+ S DE+RR+R VELRKA +D+ L KRRN D D EE+ +V
Sbjct: 17 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 76
Query: 64 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
+ S ++ +P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP V
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 136
Query: 124 ELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
E + + P Q EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WA
Sbjct: 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
LGN+ M IL L N P+ +R W +SNLCR K P PD+ +
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVV 255
Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
LP L +LI++ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T +
Sbjct: 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315
Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
T ALR VGNI TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375
Query: 363 IDHVIQEGELNQMALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
I VI + + L+E SGGL++ + +++ V Q C K
Sbjct: 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 431
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 291 bits (744), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 216/341 (63%), Gaps = 18/341 (5%)
Query: 41 DDQLFKRRNI-----DQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT 95
D+Q+ KRRN+ D ++E + +V ++++G+ S+N + ++ AT
Sbjct: 1 DEQMLKRRNVSSFPDDATSPLQENR------NNQGTVNWSVEDIVKGINSNNLESQLQAT 54
Query: 96 RSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTM 153
++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQT
Sbjct: 55 QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTK 113
Query: 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-P 212
V++ AIP F+ LL+SPH +++EQA WALGNI + +LAL+ P
Sbjct: 114 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 173
Query: 213 NTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 269
+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA+S
Sbjct: 174 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 233
Query: 270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 329
Y++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI AG
Sbjct: 234 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 293
Query: 330 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
L LL++ + NI KEA WT+SNITAG QI V+ G
Sbjct: 294 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 334
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 249 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 307
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 308 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 360
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 69 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 128
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 129 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 319 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 378
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 379 IEPLMNLLSAKDTKIIQVILDAISNI 404
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 291 bits (744), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 215/332 (64%), Gaps = 7/332 (2%)
Query: 45 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 104
F+R+++D D +++ + + +V ++++G+ S+N + ++ AT++ARK+LS+
Sbjct: 12 FERQHMDSPDLGTDDDDKAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 71
Query: 105 ERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIP 162
E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQT V++ AIP
Sbjct: 72 EKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIP 130
Query: 163 KFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT---TF 218
F+ LL+SPH +++EQA WALGNI + +LAL+ P+ T +
Sbjct: 131 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 190
Query: 219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278
LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA+SY++DG N++
Sbjct: 191 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 250
Query: 279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 338
I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI AG L LL+
Sbjct: 251 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 310
Query: 339 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
+ + NI KEA WT+SNITAG QI V+ G
Sbjct: 311 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 342
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 257 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 315
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 316 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 375
Query: 193 XXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+ + L + T ++ I+ AISN+ + + EK+ I +
Sbjct: 376 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 429
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 77 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 136
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 137 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 178
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 229/373 (61%), Gaps = 7/373 (1%)
Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
R+ +K A + +E RR+R + VE+RK+ +++ L K+R + L + V T +
Sbjct: 14 RRNRYKVAVDA-EEGRRRREDNMVEIRKSRREESLLKKRR-EGLQA--QAPVPASAATGV 69
Query: 70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
++P MI G+ S + +++ AT RK+LS ER PPI+E+I++GVVP V+ L E
Sbjct: 70 DKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE 129
Query: 130 N-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
+ P QFEA WALTNIASGTSE T VI+ A+P F++LL S ++ EQA WALGN+
Sbjct: 130 DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189
Query: 189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
+ +LA + +T + LRN W +SN CR K P P FE+ + LP
Sbjct: 190 DSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPA 248
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
L +LIH+ D E L+D CWALSY+SDG NDKIQAV++ GV PRLVELL ++L ALR
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVI 367
TVGNI TG+D QT C+I L + LL+ + + +I KEA WTISNITAGN QI VI
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 368 QEGELNQMALLVE 380
G + + L++
Sbjct: 369 NAGIIGPLVNLLQ 381
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINANAIPKFLQLL 168
I +I AG++ V LL + + EA WA++N SG S +Q +++ I LL
Sbjct: 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
Query: 169 SSPHLNLAEQATWALGNI 186
P + + L NI
Sbjct: 424 ICPDIRIVTVCLEGLENI 441
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/305 (48%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 6 VNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDC 65
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 66 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 124
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ + +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 125 GSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQI 184
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I VV TGVVP+LV+LL + E I+T
Sbjct: 185 LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTP 244
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 245 ALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 366 VIQEG 370
V+ G
Sbjct: 305 VVNHG 309
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 44 IDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 103
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 104 ASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL 145
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 294 ITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGI 353
Query: 161 IPKFLQLLSS 170
I + LL++
Sbjct: 354 IEPLMNLLTA 363
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 151/335 (45%), Positives = 219/335 (65%), Gaps = 9/335 (2%)
Query: 44 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 101
LF+R ++D D +++++ + + + + +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25 LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 102 LSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINAN 159
LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQT V++
Sbjct: 85 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGG 143
Query: 160 AIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT-- 216
AIP F+ LL+SPH +++EQA WALGNI + +LAL+ P+ T
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 217 -TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
+LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA+SY++DG
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 335
N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI AG L
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323
Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
LL++ + NI KEA WT+SNITAG QI V+ G
Sbjct: 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 331
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391
Query: 193 XXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+ + L + T ++ I+ AISN+ + + EK+ I +
Sbjct: 392 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 151/335 (45%), Positives = 219/335 (65%), Gaps = 9/335 (2%)
Query: 44 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 101
LF+R ++D D +++++ + + + + +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25 LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 102 LSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINAN 159
LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQT V++
Sbjct: 85 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGG 143
Query: 160 AIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT-- 216
AIP F+ LL+SPH +++EQA WALGNI + +LAL+ P+ T
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 217 -TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
+LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA+SY++DG
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 335
N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI AG L
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323
Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
LL++ + NI KEA WT+SNITAG QI V+ G
Sbjct: 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 331
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391
Query: 193 XXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+ + L + T ++ I+ AISN+ + + EK+ I +
Sbjct: 392 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 114
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 115 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 366 VIQEG 370
V+ G
Sbjct: 354 VVNHG 358
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 273 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 331
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391
Query: 193 XXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+ + L + T ++ I+ AISN+ + + EK+ I +
Sbjct: 392 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 41 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 100
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 101 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 159
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 160 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 219
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 220 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 279
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 280 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 366 VIQEG 370
V+ G
Sbjct: 340 VVNHG 344
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 1/174 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 259 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 317
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 318 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 377
Query: 193 XXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+ + L + T ++ I+ AISN+ + + EK+ I +
Sbjct: 378 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 431
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 79 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 138
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 139 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 180
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 65 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
V+ G
Sbjct: 304 VVNHG 308
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 281
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 282 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 43 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 293 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 353 IEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 71 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 130 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 189
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 366 VIQEG 370
V+ G
Sbjct: 310 VVNHG 314
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 229 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 287
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 288 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 340
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 49 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 108
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 109 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 358
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 359 IEPLMNLLSAKDTKIIQVILDAISNI 384
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 4 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 63
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 64 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 122
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 123 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 182
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 366 VIQEG 370
V+ G
Sbjct: 303 VVNHG 307
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 222 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 280
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 281 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 333
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 42 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 101
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 102 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 292 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 351
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 352 IEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 4 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 63
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 64 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 122
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 123 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 182
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 366 VIQEG 370
V+ G
Sbjct: 303 VVNHG 307
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 222 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 280
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 281 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 333
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 42 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 101
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 102 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 292 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 351
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 352 IEPLMNLLSAKDTKIIQVILDAISNI 377
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 65 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
V+ G
Sbjct: 304 VVNHG 308
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 281
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 282 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 43 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 293 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 353 IEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
+P QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 65 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
V+ G
Sbjct: 304 VVNHG 308
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 223 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 281
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 282 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 334
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 43 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 293 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 352
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 353 IEPLMNLLSAKDTKIIQVILDAISNI 378
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 202/302 (66%), Gaps = 7/302 (2%)
Query: 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPN 132
+V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D +P
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP- 61
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 62 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 193 XXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI V+
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 369 EG 370
G
Sbjct: 302 HG 303
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 218 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 276
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 277 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 329
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 38 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 98 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 288 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 347
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 348 IEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 285 bits (729), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 202/302 (66%), Gaps = 7/302 (2%)
Query: 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPN 132
+V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L D +P
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP- 61
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
QFE+ WALTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNI
Sbjct: 62 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 193 XXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
+ +LAL+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG QI V+
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 369 EG 370
G
Sbjct: 302 HG 303
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K VP++++ + ++ + A R+ +++ ++I+AG + + LL + N
Sbjct: 218 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTNPKTN 276
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
Q EATW ++NI +G +Q V+N +P + +LS ++A WA+ N
Sbjct: 277 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 329
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
I ++ G++P+ V L + + I + + NIA+G QT V+ G + LL
Sbjct: 38 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
+S +I ++A W + NI S D VI+ G ++ + L+
Sbjct: 98 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINANA 160
++ R I +++ G+VP V +L + TQ EA WA+TN S GT EQ + +++
Sbjct: 288 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 347
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNI 186
I + LLS+ + + A+ NI
Sbjct: 348 IEPLMNLLSAKDTKIIQVILDAISNI 373
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 211/338 (62%), Gaps = 8/338 (2%)
Query: 45 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 104
F+R+++D D ++ + M+ I ++P MI G+ S + +++ AT RK+LS
Sbjct: 12 FERQHMDSPDLGTDD-----DDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSI 66
Query: 105 ERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPK 163
ER PPI+E+I++GVVP V+ L E+ P QFEA WALTNIASGTSE T VI+ A+P
Sbjct: 67 ERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 126
Query: 164 FLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIV 223
F++LL S ++ EQA WALGN+ + +LA + +T + LRN
Sbjct: 127 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 186
Query: 224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 283
W +SN CR K P P FE+ + LP L +LIH+ D E L+D CWALSY+SDG NDKIQAV+
Sbjct: 187 WTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI 245
Query: 284 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RV 342
+ GV PRLVELL ++L ALRTVGNI TG+D QT C+I L + LL+ + +
Sbjct: 246 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 305
Query: 343 NIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
+I KEA WTISNITAGN QI VI G + + L++
Sbjct: 306 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 343
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINANAIPKFLQLL 168
I +I AG++ V LL + + EA WA++N SG S +Q +++ I LL
Sbjct: 326 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
Query: 169 SSPHLNLAEQATWALGNI 186
P + + L NI
Sbjct: 386 ICPDIRIVTVCLEGLENI 403
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/373 (42%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
+ L+E SGGL++ + +++ ++ + ++ +A N
Sbjct: 300 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 359
Query: 413 --DSAENSIENGD 423
D+ EN I+ G+
Sbjct: 360 TLDALENIIKMGE 372
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 154/348 (44%), Positives = 205/348 (58%), Gaps = 23/348 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
+ L+E SGGL++ + +++ V Q C K
Sbjct: 301 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 344
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
+ L+E SGGL++ + +++ ++ + ++ +A N
Sbjct: 300 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 359
Query: 413 --DSAENSIENGD 423
D+ EN ++ G+
Sbjct: 360 TLDALENILKMGE 372
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 181
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
+ L+E SGGL++ + +++ ++ + ++ +A N
Sbjct: 302 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 361
Query: 413 --DSAENSIENGD 423
D+ EN ++ G+
Sbjct: 362 TLDALENILKMGE 374
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 181
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
+ L+E SGGL++ + +++ ++ + ++ +A N
Sbjct: 302 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 361
Query: 413 --DSAENSIENGD 423
D+ EN ++ G+
Sbjct: 362 TLDALENILKMGE 374
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 154/348 (44%), Positives = 205/348 (58%), Gaps = 23/348 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP VE + + P Q
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
EA WALTNIASGTS QT V++A+A+P F+QLL + + + EQA WALGN+
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
M IL L N P+ +R W +SNLCR K P PD+ + LP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ D ETL D CWA+SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
TGND QT VI AG L ++ LLSS + NI KEA WTISNITAGN+ QI VI +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
+ L+E SGGL++ + +++ V Q C K
Sbjct: 301 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 344
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/435 (37%), Positives = 225/435 (51%), Gaps = 85/435 (19%)
Query: 69 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD 127
M+P + +MIE + S +P+ ++ AT+ RK+LSKE +PPIDE+I GVV VE L
Sbjct: 15 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74
Query: 128 -DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
EN QFE+ W LTNIASG S QT VI A A+P F++LLSS ++ EQA WALGNI
Sbjct: 75 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+P +L L T RN VWA+SNLCR K+P P+F K+ CL
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
+L+ L+ +D + L+D CWALSY+SDG NDKIQAV+D GV RLVELL + +++ A
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254
Query: 307 LRTVGNIATGNDHQT----DC--------------------------------------V 324
LR VGNI TG+D QT +C V
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314
Query: 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEG------------- 370
I A + +L ++ KEAAW I+N T+G S QI ++++ G
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374
Query: 371 -ELNQMAL--------------------------LVEESGGLEKLEALQHHENETVYQKC 403
++ Q+AL L+EE+ GL+K+E LQ HEN+ +YQK
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 434
Query: 404 YKIISMAFNDSAENS 418
+ +I F E+S
Sbjct: 435 FDLIEHYFGTEDEDS 449
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/435 (37%), Positives = 225/435 (51%), Gaps = 85/435 (19%)
Query: 69 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD 127
M+P + +MIE + S +P+ ++ AT+ RK+LSKE +PPIDE+I GVV VE L
Sbjct: 12 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 71
Query: 128 -DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
EN QFE+ W LTNIASG S QT VI A A+P F++LLSS ++ EQA WALGNI
Sbjct: 72 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 131
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
+P +L L T RN VWA+SNLCR K+P P+F K+ CL
Sbjct: 132 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 191
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
+L+ L+ +D + L+D CWALSY+SDG NDKIQAV+D GV RLVELL + +++ A
Sbjct: 192 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 251
Query: 307 LRTVGNIATGNDHQT----DC--------------------------------------V 324
LR VGNI TG+D QT +C V
Sbjct: 252 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 311
Query: 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEG------------- 370
I A + +L ++ KEAAW I+N T+G S QI ++++ G
Sbjct: 312 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 371
Query: 371 -ELNQMAL--------------------------LVEESGGLEKLEALQHHENETVYQKC 403
++ Q+AL L+EE+ GL+K+E LQ HEN+ +YQK
Sbjct: 372 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 431
Query: 404 YKIISMAFNDSAENS 418
+ +I F E+S
Sbjct: 432 FDLIEHYFGTEDEDS 446
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 14/233 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M + + S + + ++ ATR ++LS + + I +I+AG +P V+LL N
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXX 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 XXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLL 249
+P ++ L+ PN L+ +WA+SN+ N E+I+ LP L
Sbjct: 133 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN-----EQIQAVIDAGALPAL 185
Query: 250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
QL+ + + + L + WALS I+ G N++ QAV + G + +L +L E I
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 101/192 (52%), Gaps = 29/192 (15%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174
Query: 365 HVIQEGEL-----------------------------NQMALLVEESGGLEKLEALQHHE 395
VI G L N+ V+E+G LEKLE LQ HE
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
Query: 396 NETVYQKCYKII 407
NE + ++ + +
Sbjct: 235 NEKIQKEAQEAL 246
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 246 LPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP + Q +++ D+ E LS +SDG N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 HVIQEGEL 372
VI G L
Sbjct: 133 AVIDAGAL 140
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQ 134
+P +++ + S N ++ A + + S + I +I+AG +P V+LL N
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 183
EA WAL+NIASG +EQ V A A+ K QL S + + ++A AL
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
V+E+G LEKLE LQ HENE + ++ + +
Sbjct: 175 A-------------VKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M++ + S + + A R ++ S + I +I+AG +P V+LL N
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXX 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 XXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
+P ++ L+ PN L+ +WA+SN+ N K L L QL
Sbjct: 133 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A+ K QL S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 170 SPHLNLAEQATWAL 183
+ + ++A AL
Sbjct: 191 HENEKIQKEAQEAL 204
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
V+E+G LEKLE LQ HENE + ++ + +
Sbjct: 175 A-------------VKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M + + S + + ++ ATR ++LS + + I +I+AG +P V+LL N
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXX 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 XXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
+P ++ L+ PN L+ +WA+SN+ N K L L QL
Sbjct: 133 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A+ K QL S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 170 SPHLNLAEQATWAL 183
+ + ++A AL
Sbjct: 191 HENEKIQKEAQEAL 204
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
V+E+G LE LQ NE + ++ + +
Sbjct: 175 A-------------VKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 53/235 (22%)
Query: 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSSP+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN------ 67
Query: 179 ATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238
L+ +WA+SN+ N
Sbjct: 68 -------------------------------------EQILQEALWALSNIASGGN---- 86
Query: 239 FEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293
E+I+ LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+
Sbjct: 87 -EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 348
LL S IL AL + NIA+G + Q V +AG +++L SS I KEA
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%)
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 366 VIQEGEL 372
VI G L
Sbjct: 134 VIDAGAL 140
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M++ + S + + A R ++ S I +I+AG +P V+LL N
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXX 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 XXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
+P ++ L+ PN L+ +WA+SN+ N K P L QL
Sbjct: 133 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A P QL S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQS 190
Query: 170 SPHLNLAEQATWALGNI 186
SP+ + ++A AL I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 45/265 (16%)
Query: 97 SARKMLSKERHPP--IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154
+AR + P I +++AG V + V+LL + Q EA AL NIASG E
Sbjct: 22 AARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81
Query: 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNT 214
+++A + ++LL+S + ++A AL NI +
Sbjct: 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANI-------------------------ASG 116
Query: 215 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274
P ++ IV D +++ + LL +TD E + AL+ I+ G
Sbjct: 117 PDEAIKAIV--------------DAGGVEVLVKLLT----STDSEVQKEAARALANIASG 158
Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK 334
++ I+A+VD G V LV+LL S ++ + A R + NIA+G ++ AGG++ ++
Sbjct: 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ 218
Query: 335 KLLSSSRVNIVKEAAWTISNITAGN 359
KLL+S+ + KEA + NI +G
Sbjct: 219 KLLTSTDSEVQKEAQRALENIKSGG 243
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 56/285 (19%)
Query: 123 VELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
V+LL + TQ EA L IASG + +++A + ++LL+S + ++A A
Sbjct: 8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 67
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
L NI + P ++ IV D +
Sbjct: 68 LANI-------------------------ASGPDEAIKAIV--------------DAGGV 88
Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
++ + LL +TD E + AL+ I+ G ++ I+A+VD G V LV+LL S ++ +
Sbjct: 89 EVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 144
Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
A R + NIA+G D ++ AGG++ + KLL+S+ + KEAA ++NI +G +
Sbjct: 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204
Query: 363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
I ++ ++GG+E L+ L + V ++ + +
Sbjct: 205 IKAIV-------------DAGGVEVLQKLLTSTDSEVQKEAQRAL 236
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 50
R FKN GK EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 3 RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 69 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 150 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 201
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 202 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 260
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 261 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 317
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 318 AGDREDITEPAICALRH 334
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 72 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 130
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 131 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 175
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 93 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 153 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 204
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 205 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 263
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 264 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 320
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 321 AGDREDITEPAICALRH 337
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 75 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 133
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 134 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 178
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 96 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 156 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 207
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 208 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 266
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 267 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 323
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 324 AGDREDITEPAICALRH 340
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 74 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 132
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 133 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 177
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 95 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 155 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 206
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 207 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 265
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 266 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 322
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 323 AGDREDITEPAICALRH 339
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 68 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 99/255 (38%), Gaps = 21/255 (8%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN--QLIHTTDVETLSDICW- 266
+ T FL AI+ C + E I L L++ T + W
Sbjct: 149 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202
Query: 267 ---ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 323
L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 203 TSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG- 260
Query: 324 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESG 383
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G
Sbjct: 261 --MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318
Query: 384 GLEKLE-----ALQH 393
E + AL+H
Sbjct: 319 DREDITEPAICALRH 333
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 60 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 118
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 119 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 163
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 81 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 141 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 192
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 193 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 251
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 252 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 308
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 309 AGDREDITEPAICALRH 325
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 56 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 137 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 188
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 189 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 247
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 248 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 304
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 305 AGDREDITEPAICALRH 321
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 73 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 154 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 205
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 206 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 264
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 265 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 321
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 322 AGDREDITEPAICALRH 338
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 56 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 137 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 188
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 189 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 247
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 248 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 304
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 305 AGDREDITEPAICALRH 321
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 58 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 116
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 117 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 161
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++L SP ++ A L N+ + +++AL
Sbjct: 79 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL----PLLNQLIHTTDVETLSDIC 265
+ T FL AI+ C + E I L P L++ T +
Sbjct: 139 LN-KTNVKFL-----AITTDCLQILAYGNQESKLIILASGGP--QALVNIMRTYTYEKLL 190
Query: 266 W----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321
W L +S ++K A+V+ G + L L ++ L T+ N++ Q
Sbjct: 191 WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 249
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381
G L + +LL S +N+V AA +SN+T N + V Q G + + V
Sbjct: 250 G---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 306
Query: 382 SGGLEKLE-----ALQH 393
+G E + AL+H
Sbjct: 307 AGDREDITEPAICALRH 323
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 71 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK 387
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G E
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Query: 388 LE-----ALQH 393
+ AL+H
Sbjct: 326 ITEPAICALRH 336
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 69 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK 387
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G E
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 323
Query: 388 LE-----ALQH 393
+ AL+H
Sbjct: 324 ITEPAICALRH 334
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 73 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK 387
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G E
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 327
Query: 388 LE-----ALQH 393
+ AL+H
Sbjct: 328 ITEPAICALRH 338
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 67 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
+ V AGGLQKM LL+ + V +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 67 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
+ V AGGLQKM LL+ + V +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV +L S ++L A+ T+ N+
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK 387
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G E
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458
Query: 388 LE-----ALQH----HENETVYQKCYKI 406
+ AL+H H++ + Q ++
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRL 486
>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 27
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 25 RRKRCEMNVELRKAHKDDQLFKRRNI 50
RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T DVET L +S H + + A+ +G +P LV+ L S ++L A+ T+ N+
Sbjct: 13 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLL 71
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
+ V AGGLQK LL+ + V + + + GN
Sbjct: 72 LHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGN 116
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK 387
G L + +LL S +N+V AA +SN+T N + V Q G + + V +G E
Sbjct: 208 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDRED 267
Query: 388 LE-----ALQH 393
+ AL+H
Sbjct: 268 ITEPAICALRH 278
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T+D++T L +S H + + A+ +G +P LV +L S ++L A+ T+ N+
Sbjct: 73 TSDLDTARCTTSILHNLSH-HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLL 131
Query: 315 TGNDHQTDCVIQAGGLQKMKKLL 337
+ V A GLQKM LL
Sbjct: 132 LYQEGAKMAVRLADGLQKMVPLL 154
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 324 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
+++AGG+Q + K L+S+ +V+ WT+ N++ ++Q
Sbjct: 225 IVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQ 263
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 30/232 (12%)
Query: 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 209
E + + + IP +++LSSP ++ A L N+ + +++ L
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP-----LLNQLIHTTDVETLSDI 264
+ N P FL AI+ C + E I L L Q++ E L
Sbjct: 154 LNKNNPK-FL-----AITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKL--- 204
Query: 265 CW----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
W L +S ++K A+V+ G + L + L S ++ L T+ N+
Sbjct: 205 LWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL------- 256
Query: 321 TDCVIQAGGLQKMKKLL----SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+D + GL+ + K+L S VN++ A T+SN+T NS+ V Q
Sbjct: 257 SDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQ 308
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 120/316 (37%), Gaps = 53/316 (16%)
Query: 129 ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
+NP+ ++ A A I G + + A+P ++L+ P + + + A W +G I
Sbjct: 251 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 310
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-----EK 241
+ Q L P N+ WA S+L A D E
Sbjct: 311 CELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLAEAAYEAADVADDQEEP 369
Query: 242 IKICLP-----LLNQLIHTTD-------------VETLSDICWALSYISDGHNDKIQAVV 283
CL ++ +L+ TTD E+L +I + + D AV
Sbjct: 370 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI------VKNSAKDCYPAVQ 423
Query: 284 DTGVV--PRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSS 340
T +V RL ++L E + +++ + ND Q+ C L+K++ +
Sbjct: 424 KTTLVIMERLQQVLQME------SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 477
Query: 341 RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG--LEKLEALQHH---- 394
++V + + TAG+ +QE L ++ LVE GG L+ +EA +
Sbjct: 478 ISDVVMASLLRMFQSTAGSGG-----VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 532
Query: 395 -ENETVYQKCYKIISM 409
+N YQ C + +
Sbjct: 533 LKNYAEYQVCLAAVGL 548
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 120/316 (37%), Gaps = 53/316 (16%)
Query: 129 ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
+NP+ ++ A A I G + + A+P ++L+ P + + + A W +G I
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-----EK 241
+ Q L P N+ WA S+L A D E
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLAEAAYEAADVADDQEEP 494
Query: 242 IKICLP-----LLNQLIHTTD-------------VETLSDICWALSYISDGHNDKIQAVV 283
CL ++ +L+ TTD E+L +I + + D AV
Sbjct: 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI------VKNSAKDCYPAVQ 548
Query: 284 DTGVV--PRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSS 340
T +V RL ++L E + +++ + ND Q+ C L+K++ +
Sbjct: 549 KTTLVIMERLQQVLQME------SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602
Query: 341 RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG--LEKLEALQHH---- 394
++V + + TAG+ +QE L ++ LVE GG L+ +EA +
Sbjct: 603 ISDVVMASLLRMFQSTAGSGG-----VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 395 -ENETVYQKCYKIISM 409
+N YQ C + +
Sbjct: 658 LKNYAEYQVCLAAVGL 673
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 120/316 (37%), Gaps = 53/316 (16%)
Query: 129 ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
+NP+ ++ A A I G + + A+P ++L+ P + + + A W +G I
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-----EK 241
+ Q L P N+ WA S+L A D E
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLAEAAYEAADVADDQEEP 494
Query: 242 IKICLP-----LLNQLIHTTD-------------VETLSDICWALSYISDGHNDKIQAVV 283
CL ++ +L+ TTD E+L +I + + D AV
Sbjct: 495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI------VKNSAKDCYPAVQ 548
Query: 284 DTGVV--PRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSS 340
T +V RL ++L E + +++ + ND Q+ C L+K++ +
Sbjct: 549 KTTLVIMERLQQVLQME------SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602
Query: 341 RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG--LEKLEALQHH---- 394
++V + + TAG+ +QE L ++ LVE GG L+ +EA +
Sbjct: 603 ISDVVMASLLRMFQSTAGSGG-----VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 395 -ENETVYQKCYKIISM 409
+N YQ C + +
Sbjct: 658 LKNYAEYQVCLAAVGL 673
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 127/332 (38%), Gaps = 55/332 (16%)
Query: 115 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
E +VP + + + +NP+ ++ A A +I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 171 PHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLC 230
P + + + W +G I + Q L P N+ WA S+L
Sbjct: 420 PSVVVRDTTAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLA 478
Query: 231 RNKNPAPDF-----EKIKICLP-----LLNQLIHTTD-------------VETLSDICWA 267
A D E CL ++ +L+ TTD E+L +I
Sbjct: 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI--- 535
Query: 268 LSYISDGHNDKIQAVVDTGVV--PRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCV 324
+ + D AV T +V RL ++L E + +++ + ND Q+ C
Sbjct: 536 ---VKNSAKDCYPAVQKTTLVIMERLQQVLQME------SHIQSTSDRIQFNDLQSLLCA 586
Query: 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG 384
L+K++ + ++V + + TAG+ +QE L ++ LVE GG
Sbjct: 587 TLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGG-----VQEDALMAVSTLVEVLGG 641
Query: 385 --LEKLEALQHH-----ENETVYQKCYKIISM 409
L+ +EA + +N YQ C + +
Sbjct: 642 EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI-NANAIPKFLQLLSSPH-LNLA 176
+P+ V LLD A AL NI+ G + I N + +P ++LL ++L
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 177 EQATWALGNI 186
E T L N+
Sbjct: 152 EVITGTLWNL 161
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 276 NDKIQA-VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKM 333
NDK++ V +P LV LLD + + A + NI+ G D I+ G+ +
Sbjct: 79 NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 334 KKLLSSSR----VNIVKEAAWTISNITAGNSRQIDHVIQ 368
+LL +R ++ W +S+ + +DH +
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALH 177
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
FE+ ALTN+AS +I + K L HL L A L N+
Sbjct: 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL--RTVGNIATGND 318
LSD+C + +D + + D +P L LD+ L R VG+ N
Sbjct: 75 LSDLCGTVMSTTDVEKSFDKLLKD---LPELA--LDTPRAPQLVGQFIARAVGDGILCNT 129
Query: 319 H------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL 372
+ DCV L K LLS S+ K++ W + G + ++H+++E ++
Sbjct: 130 YIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWG----SGGGQQSVNHLVKEIDM 185
Query: 373 NQMALLV-----EESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 420
L+ E L++LE + H +E VY+ I M + E++ +
Sbjct: 186 LLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEA----IIMVLESTGESTFK 233
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV- 379
DCV L K LLS S+ K++ W + G + ++H+++E ++ L+
Sbjct: 175 VDCVQARAALDKATVLLSMSKGGKRKDSVWG----SGGGQQPVNHLVKEIDMLLKEYLLS 230
Query: 380 ----EESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 420
E L++LE + H +E VY+ I M + E++ +
Sbjct: 231 GDISEAEHCLKELE-VPHFHHELVYEA----IVMVLESTGESAFK 270
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 33/159 (20%)
Query: 261 LSDICWALSYISDGHN--DKI-----QAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
LSD+C + +D DK+ + +DT P+LV + R VG+
Sbjct: 61 LSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIA----------RAVGDG 110
Query: 314 ATGNDH------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
N + DCV L K LLS S+ K++ W + G + ++H++
Sbjct: 111 ILCNTYIDSYKGTVDCVQARAALDKATVLLSXSKGGKRKDSVWG----SGGGQQSVNHLV 166
Query: 368 QEGE--LNQMAL---LVEESGGLEKLEALQHHENETVYQ 401
+E + L + L + E L++LE + H +E VY+
Sbjct: 167 KEIDXLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYE 204
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 318
ETL DIC ALSY+ + +A + TG E LD L ++TV I TG D
Sbjct: 180 ETLDDICEALSYVDYLFPNFAEAKLLTG-----KETLDEIADCFLACGVKTV-VIKTGKD 233
Query: 319 HQTDCVIQAG 328
C I+ G
Sbjct: 234 G---CFIKRG 240
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 110 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 168
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 659 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 717
Query: 169 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 228
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 718 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 777
Query: 229 L 229
L
Sbjct: 778 L 778
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 110 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 168
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679
Query: 169 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 228
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 680 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 739
Query: 229 L 229
L
Sbjct: 740 L 740
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 110 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 168
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 634 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 692
Query: 169 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 228
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 693 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 752
Query: 229 L 229
L
Sbjct: 753 L 753
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 115 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 171 PHLNLAEQATWALGNI 186
P + + + A W +G I
Sbjct: 420 PSVVVRDTAAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 115 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 171 PHLNLAEQATWALGNI 186
P + + + A W +G I
Sbjct: 420 PSVVVRDTAAWTVGRI 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,843,884
Number of Sequences: 62578
Number of extensions: 440030
Number of successful extensions: 1910
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 222
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)