Query psy9169
Match_columns 440
No_of_seqs 360 out of 2435
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 20:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 2.3E-84 5E-89 569.6 30.7 433 1-439 1-526 (526)
2 KOG0166|consensus 100.0 1.4E-79 3.1E-84 580.6 41.0 428 5-440 3-514 (514)
3 KOG0166|consensus 100.0 1.2E-41 2.7E-46 322.7 25.4 289 73-363 108-400 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.9E-41 8.5E-46 296.8 14.3 284 73-358 113-399 (526)
5 PLN03200 cellulose synthase-in 100.0 1.2E-34 2.6E-39 312.8 36.7 327 73-413 188-560 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.4E-32 3E-37 296.9 36.7 339 74-415 404-863 (2102)
7 KOG4224|consensus 100.0 3.3E-27 7.2E-32 210.6 20.0 323 73-416 125-450 (550)
8 KOG4224|consensus 100.0 5.6E-26 1.2E-30 202.8 24.7 288 73-368 166-456 (550)
9 PF05804 KAP: Kinesin-associat 99.9 3.2E-20 6.9E-25 186.8 31.6 321 73-415 289-652 (708)
10 PF05804 KAP: Kinesin-associat 99.8 9.6E-18 2.1E-22 169.0 30.3 310 79-412 255-607 (708)
11 KOG4199|consensus 99.8 5.8E-16 1.3E-20 137.8 27.0 310 83-413 116-445 (461)
12 KOG1048|consensus 99.7 1.5E-16 3.3E-21 156.9 21.7 325 73-415 232-687 (717)
13 PF10508 Proteasom_PSMB: Prote 99.7 1.7E-14 3.8E-19 143.8 30.5 324 77-416 41-370 (503)
14 PRK09687 putative lyase; Provi 99.7 1.8E-14 3.9E-19 132.3 24.7 255 74-409 23-279 (280)
15 KOG4199|consensus 99.7 3.2E-14 7E-19 126.8 24.8 280 74-357 145-444 (461)
16 PF04826 Arm_2: Armadillo-like 99.7 8.3E-15 1.8E-19 131.5 19.9 240 155-403 8-253 (254)
17 PF01749 IBB: Importin beta bi 99.7 2.9E-17 6.3E-22 124.5 2.1 93 3-96 2-96 (97)
18 KOG2122|consensus 99.7 2.3E-14 5E-19 147.5 23.3 328 73-415 234-604 (2195)
19 KOG2122|consensus 99.6 1.1E-14 2.4E-19 149.9 20.1 265 93-359 317-603 (2195)
20 KOG0168|consensus 99.6 9E-14 1.9E-18 137.1 24.5 261 74-339 167-437 (1051)
21 PF10508 Proteasom_PSMB: Prote 99.6 1.6E-12 3.4E-17 129.8 32.1 322 73-412 118-462 (503)
22 PF04826 Arm_2: Armadillo-like 99.6 1.9E-13 4E-18 122.8 21.2 227 113-347 8-252 (254)
23 KOG1048|consensus 99.6 1.5E-13 3.3E-18 135.8 19.1 291 118-418 234-601 (717)
24 cd00020 ARM Armadillo/beta-cat 99.6 9.5E-14 2.1E-18 111.6 14.1 119 112-231 2-120 (120)
25 PRK09687 putative lyase; Provi 99.6 6.2E-13 1.3E-17 122.1 20.5 207 118-368 24-230 (280)
26 cd00020 ARM Armadillo/beta-cat 99.5 5.7E-13 1.2E-17 107.0 14.2 117 241-357 4-120 (120)
27 cd00256 VATPase_H VATPase_H, r 99.5 5.1E-11 1.1E-15 113.9 26.7 320 76-412 55-425 (429)
28 PRK13800 putative oxidoreducta 99.5 4E-11 8.7E-16 128.2 28.8 248 74-409 621-896 (897)
29 KOG4500|consensus 99.4 1.5E-11 3.2E-16 113.4 18.6 314 85-416 53-394 (604)
30 KOG4500|consensus 99.4 7.6E-11 1.6E-15 108.8 23.1 339 75-417 88-527 (604)
31 KOG1222|consensus 99.4 1.6E-10 3.4E-15 108.1 25.0 315 74-408 304-659 (791)
32 KOG1293|consensus 99.4 2.2E-10 4.8E-15 111.1 26.5 323 78-413 13-534 (678)
33 cd00256 VATPase_H VATPase_H, r 99.4 2.4E-10 5.2E-15 109.4 25.2 282 74-358 101-426 (429)
34 PTZ00429 beta-adaptin; Provisi 99.2 1.6E-08 3.5E-13 104.1 30.7 265 73-363 67-332 (746)
35 KOG2171|consensus 99.2 1.1E-08 2.3E-13 105.7 29.0 316 77-411 162-503 (1075)
36 PF01602 Adaptin_N: Adaptin N 99.2 9.1E-10 2E-14 112.1 20.9 259 73-360 41-299 (526)
37 KOG2023|consensus 99.2 4E-10 8.6E-15 109.2 16.2 275 117-411 128-504 (885)
38 PRK13800 putative oxidoreducta 99.2 5.9E-09 1.3E-13 111.7 25.7 229 74-354 652-896 (897)
39 KOG2759|consensus 99.2 3.5E-09 7.5E-14 98.1 19.3 279 76-358 116-439 (442)
40 KOG2160|consensus 99.2 3.3E-09 7.2E-14 96.9 18.9 188 84-273 93-282 (342)
41 KOG2759|consensus 99.2 1.5E-08 3.3E-13 93.9 23.2 322 74-412 65-438 (442)
42 PF01602 Adaptin_N: Adaptin N 99.2 2.8E-09 6E-14 108.6 20.6 309 74-416 79-448 (526)
43 PTZ00429 beta-adaptin; Provisi 99.2 7E-08 1.5E-12 99.5 30.3 254 75-358 33-286 (746)
44 KOG1222|consensus 99.1 4.1E-08 9E-13 92.2 23.8 284 87-394 276-601 (791)
45 KOG2160|consensus 99.1 6.5E-09 1.4E-13 95.1 17.5 188 127-315 93-282 (342)
46 KOG2171|consensus 99.1 9.3E-08 2E-12 98.9 26.6 317 75-414 119-463 (1075)
47 PF03224 V-ATPase_H_N: V-ATPas 99.1 6.9E-09 1.5E-13 97.7 16.7 232 161-408 57-310 (312)
48 KOG1293|consensus 99.1 2E-08 4.4E-13 97.7 19.6 232 127-359 19-263 (678)
49 KOG0168|consensus 99.0 4.9E-08 1.1E-12 97.4 21.5 293 119-416 169-474 (1051)
50 KOG1241|consensus 99.0 1.2E-08 2.7E-13 100.6 16.9 276 77-357 175-477 (859)
51 KOG0946|consensus 99.0 2.8E-07 6E-12 91.5 25.2 335 72-418 20-405 (970)
52 KOG2023|consensus 99.0 9.3E-08 2E-12 93.1 21.4 271 72-358 172-506 (885)
53 KOG1517|consensus 98.9 1.7E-07 3.6E-12 95.5 20.9 272 88-368 450-743 (1387)
54 PF03224 V-ATPase_H_N: V-ATPas 98.9 3.9E-08 8.4E-13 92.7 15.2 231 117-350 55-307 (312)
55 KOG3678|consensus 98.9 4.4E-07 9.6E-12 85.1 21.5 269 72-357 178-452 (832)
56 KOG0946|consensus 98.9 3.4E-06 7.3E-11 84.1 26.7 294 74-367 61-409 (970)
57 KOG3678|consensus 98.8 5.3E-07 1.1E-11 84.6 18.5 274 110-411 173-451 (832)
58 KOG0213|consensus 98.7 8.6E-07 1.9E-11 87.5 18.1 316 75-414 800-1144(1172)
59 KOG1059|consensus 98.7 1.3E-05 2.8E-10 79.3 24.7 220 76-316 146-366 (877)
60 KOG1241|consensus 98.7 5.1E-06 1.1E-10 82.6 22.0 276 74-358 319-627 (859)
61 KOG2973|consensus 98.7 8.3E-06 1.8E-10 73.0 20.7 274 119-415 5-318 (353)
62 KOG0213|consensus 98.6 2E-06 4.2E-11 85.1 17.7 318 75-413 717-1066(1172)
63 KOG1517|consensus 98.6 2.7E-06 5.8E-11 87.1 17.9 254 74-331 472-748 (1387)
64 COG5181 HSH155 U2 snRNP splice 98.6 4.7E-06 1E-10 80.9 18.5 264 73-358 603-871 (975)
65 COG5369 Uncharacterized conser 98.6 4.3E-06 9.3E-11 80.0 17.8 233 177-410 407-739 (743)
66 PF00514 Arm: Armadillo/beta-c 98.5 1.8E-07 3.9E-12 59.0 5.2 41 317-357 1-41 (41)
67 KOG4413|consensus 98.5 9E-05 2E-09 67.0 23.1 329 76-410 84-437 (524)
68 TIGR02270 conserved hypothetic 98.5 8.4E-05 1.8E-09 72.0 24.8 211 75-356 55-266 (410)
69 COG5215 KAP95 Karyopherin (imp 98.5 3.6E-05 7.8E-10 74.4 20.3 262 86-358 190-480 (858)
70 KOG2973|consensus 98.4 0.00012 2.7E-09 65.7 21.7 269 76-356 5-313 (353)
71 PF00514 Arm: Armadillo/beta-c 98.4 5.3E-07 1.2E-11 56.9 4.9 41 148-188 1-41 (41)
72 TIGR02270 conserved hypothetic 98.4 6.5E-05 1.4E-09 72.7 21.6 211 75-358 87-297 (410)
73 COG1413 FOG: HEAT repeat [Ener 98.4 0.0001 2.2E-09 70.5 22.9 241 117-412 43-304 (335)
74 COG1413 FOG: HEAT repeat [Ener 98.4 0.00021 4.6E-09 68.3 24.5 188 74-315 43-242 (335)
75 KOG1062|consensus 98.4 0.0001 2.2E-09 74.1 22.2 66 288-358 315-380 (866)
76 PF10165 Ric8: Guanine nucleot 98.4 0.00016 3.4E-09 71.4 23.6 264 95-360 2-340 (446)
77 PF14664 RICTOR_N: Rapamycin-i 98.4 6.8E-05 1.5E-09 71.7 20.1 317 76-411 27-363 (371)
78 COG5369 Uncharacterized conser 98.4 6.4E-06 1.4E-10 78.8 12.7 243 112-355 426-739 (743)
79 COG5231 VMA13 Vacuolar H+-ATPa 98.3 4.9E-05 1.1E-09 68.4 17.2 228 127-357 159-428 (432)
80 KOG1789|consensus 98.3 0.00032 7E-09 72.4 25.0 264 89-358 1740-2117(2235)
81 KOG1061|consensus 98.3 4.8E-05 1.1E-09 76.2 17.5 274 76-368 88-393 (734)
82 KOG1059|consensus 98.3 0.0002 4.3E-09 71.2 21.2 227 117-367 144-373 (877)
83 KOG1062|consensus 98.3 0.0014 3E-08 66.3 27.0 300 5-347 4-351 (866)
84 KOG1061|consensus 98.3 0.0001 2.3E-09 73.9 19.2 253 74-350 49-301 (734)
85 KOG1824|consensus 98.3 0.00016 3.4E-09 73.9 20.5 274 78-363 9-292 (1233)
86 KOG4646|consensus 98.2 1.7E-05 3.6E-10 62.3 10.5 115 117-234 16-131 (173)
87 COG5181 HSH155 U2 snRNP splice 98.2 1E-05 2.2E-10 78.7 11.2 153 160-315 605-759 (975)
88 PF13646 HEAT_2: HEAT repeats; 98.2 4.4E-06 9.6E-11 62.7 6.8 87 119-227 1-88 (88)
89 KOG1060|consensus 98.2 0.00089 1.9E-08 67.4 23.5 219 73-318 107-353 (968)
90 PF05536 Neurochondrin: Neuroc 98.2 0.00025 5.5E-09 71.5 19.9 236 74-315 5-261 (543)
91 KOG1242|consensus 98.1 0.002 4.4E-08 63.5 24.5 284 118-413 97-402 (569)
92 PF05536 Neurochondrin: Neuroc 98.1 0.00032 6.9E-09 70.8 19.8 235 118-357 6-261 (543)
93 COG5215 KAP95 Karyopherin (imp 98.1 0.00027 5.7E-09 68.6 17.8 271 77-358 136-438 (858)
94 KOG1824|consensus 98.1 0.00044 9.6E-09 70.8 19.7 217 128-368 830-1047(1233)
95 KOG1240|consensus 98.1 0.00018 3.9E-09 75.4 17.1 267 76-357 424-725 (1431)
96 KOG4646|consensus 98.1 3.1E-05 6.7E-10 60.8 8.9 133 201-335 16-148 (173)
97 KOG0212|consensus 98.1 0.00059 1.3E-08 66.1 19.2 236 74-319 163-410 (675)
98 KOG1242|consensus 98.0 0.0035 7.6E-08 61.9 24.3 307 72-410 94-442 (569)
99 KOG4413|consensus 98.0 0.0017 3.8E-08 59.0 20.4 286 73-362 127-444 (524)
100 PF12348 CLASP_N: CLASP N term 98.0 9.4E-05 2E-09 66.5 12.7 192 83-281 16-214 (228)
101 KOG2734|consensus 98.0 0.0021 4.5E-08 60.7 21.3 227 109-337 117-370 (536)
102 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00024 5.3E-09 64.1 14.7 233 79-315 154-428 (432)
103 PF13513 HEAT_EZ: HEAT-like re 98.0 1.1E-05 2.5E-10 54.5 5.0 55 300-355 1-55 (55)
104 PF13646 HEAT_2: HEAT repeats; 98.0 2.8E-05 6E-10 58.3 7.3 86 246-353 1-88 (88)
105 KOG0212|consensus 98.0 0.00044 9.5E-09 67.0 16.3 317 73-414 83-408 (675)
106 KOG2259|consensus 98.0 0.00079 1.7E-08 66.5 18.2 193 164-368 203-453 (823)
107 KOG2259|consensus 98.0 0.00028 6E-09 69.6 15.0 266 79-368 203-486 (823)
108 PF13513 HEAT_EZ: HEAT-like re 97.9 1.8E-05 3.9E-10 53.5 4.9 55 131-186 1-55 (55)
109 COG5096 Vesicle coat complex, 97.9 0.014 2.9E-07 60.2 27.1 142 74-232 55-196 (757)
110 PF12348 CLASP_N: CLASP N term 97.9 0.00012 2.5E-09 65.9 11.3 186 169-361 17-210 (228)
111 KOG1240|consensus 97.9 0.00069 1.5E-08 71.2 16.9 270 119-412 424-725 (1431)
112 smart00185 ARM Armadillo/beta- 97.8 5.3E-05 1.1E-09 47.5 5.4 38 319-356 3-40 (41)
113 PF14664 RICTOR_N: Rapamycin-i 97.8 0.003 6.4E-08 60.6 19.5 234 116-357 24-269 (371)
114 KOG2062|consensus 97.8 0.001 2.2E-08 66.6 16.2 204 117-360 413-621 (929)
115 KOG1077|consensus 97.8 0.014 3.1E-07 58.4 23.9 267 74-358 111-399 (938)
116 KOG1060|consensus 97.8 0.021 4.5E-07 58.0 25.1 204 75-311 36-242 (968)
117 KOG1077|consensus 97.8 0.018 3.8E-07 57.8 23.7 304 73-414 73-400 (938)
118 KOG1789|consensus 97.7 0.0072 1.6E-07 63.0 21.2 260 75-340 1772-2142(2235)
119 PF10165 Ric8: Guanine nucleot 97.7 0.005 1.1E-07 60.9 19.8 232 84-317 42-339 (446)
120 smart00185 ARM Armadillo/beta- 97.7 0.0001 2.2E-09 46.2 5.3 39 149-187 2-40 (41)
121 KOG2734|consensus 97.7 0.0081 1.8E-07 56.9 19.5 241 73-315 124-400 (536)
122 PF09759 Atx10homo_assoc: Spin 97.7 0.0003 6.4E-09 53.4 8.0 67 133-199 2-70 (102)
123 KOG0567|consensus 97.7 0.018 3.8E-07 51.1 20.0 252 76-410 5-278 (289)
124 KOG0567|consensus 97.6 0.005 1.1E-07 54.5 16.2 225 76-356 38-279 (289)
125 COG5096 Vesicle coat complex, 97.6 0.014 2.9E-07 60.2 21.7 169 83-274 28-196 (757)
126 PF09759 Atx10homo_assoc: Spin 97.6 0.00043 9.4E-09 52.5 8.3 63 302-364 2-66 (102)
127 KOG1058|consensus 97.5 0.0096 2.1E-07 60.0 17.5 107 76-189 22-164 (948)
128 COG5240 SEC21 Vesicle coat com 97.4 0.02 4.3E-07 56.1 17.9 260 79-356 269-554 (898)
129 COG5240 SEC21 Vesicle coat com 97.3 0.11 2.4E-06 51.2 22.4 99 161-268 266-364 (898)
130 KOG0211|consensus 97.3 0.029 6.4E-07 58.3 19.6 247 161-414 357-627 (759)
131 PF08569 Mo25: Mo25-like; Int 97.3 0.0051 1.1E-07 58.0 13.0 202 153-358 70-284 (335)
132 KOG1967|consensus 97.3 0.0025 5.5E-08 65.4 11.6 193 159-356 815-1023(1030)
133 KOG0211|consensus 97.3 0.028 6E-07 58.4 19.2 268 76-358 357-626 (759)
134 PF05004 IFRD: Interferon-rela 97.3 0.025 5.3E-07 53.1 17.3 192 76-273 45-257 (309)
135 KOG4151|consensus 97.2 0.0048 1E-07 62.6 12.8 209 147-361 492-703 (748)
136 PF08569 Mo25: Mo25-like; Int 97.2 0.033 7.2E-07 52.6 17.5 205 195-413 70-284 (335)
137 PF12460 MMS19_C: RNAPII trans 97.2 0.014 3E-07 57.5 15.3 204 76-293 191-413 (415)
138 PF12717 Cnd1: non-SMC mitotic 97.1 0.023 5E-07 48.8 14.2 93 130-233 1-94 (178)
139 KOG1248|consensus 97.1 0.14 2.9E-06 54.8 21.9 238 127-368 664-910 (1176)
140 KOG2274|consensus 97.1 0.13 2.9E-06 53.2 21.0 237 84-329 460-703 (1005)
141 PF11698 V-ATPase_H_C: V-ATPas 97.1 0.00085 1.8E-08 52.3 4.5 72 286-357 43-115 (119)
142 KOG1943|consensus 97.1 0.58 1.3E-05 49.7 26.9 229 75-315 342-611 (1133)
143 PF12717 Cnd1: non-SMC mitotic 97.1 0.094 2E-06 45.0 17.5 92 216-316 2-93 (178)
144 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0012 2.6E-08 51.5 5.0 73 243-315 42-115 (119)
145 KOG1991|consensus 97.0 0.094 2E-06 54.8 19.6 261 90-357 434-711 (1010)
146 KOG0915|consensus 97.0 0.0089 1.9E-07 64.7 12.7 266 76-357 820-1113(1702)
147 KOG0414|consensus 97.0 0.012 2.5E-07 62.3 13.3 137 240-404 915-1056(1251)
148 KOG1248|consensus 97.0 0.076 1.6E-06 56.5 19.1 222 84-315 664-898 (1176)
149 KOG1078|consensus 97.0 0.054 1.2E-06 55.1 17.0 260 76-356 247-531 (865)
150 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0093 2E-07 45.3 9.1 93 303-411 3-95 (97)
151 PF11841 DUF3361: Domain of un 96.9 0.053 1.1E-06 44.8 13.8 124 194-319 4-135 (160)
152 COG5116 RPN2 26S proteasome re 96.9 0.029 6.3E-07 54.9 14.1 99 247-361 519-619 (926)
153 PF08045 CDC14: Cell division 96.9 0.025 5.4E-07 50.8 12.9 105 301-418 106-213 (257)
154 KOG4151|consensus 96.9 0.015 3.2E-07 59.2 12.6 214 74-294 504-720 (748)
155 PF06025 DUF913: Domain of Unk 96.9 0.12 2.5E-06 50.0 18.3 192 136-341 3-209 (379)
156 PF13764 E3_UbLigase_R4: E3 ub 96.9 0.27 6E-06 51.7 21.8 200 157-359 115-366 (802)
157 PF04078 Rcd1: Cell differenti 96.8 0.11 2.4E-06 46.5 15.6 188 87-278 8-223 (262)
158 PF12719 Cnd3: Nuclear condens 96.7 0.15 3.3E-06 47.7 17.7 171 117-298 26-209 (298)
159 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0069 1.5E-07 46.0 6.8 91 219-312 3-93 (97)
160 KOG0915|consensus 96.7 0.12 2.6E-06 56.5 17.9 221 118-344 957-1188(1702)
161 KOG2274|consensus 96.7 0.7 1.5E-05 48.2 22.3 239 117-362 530-785 (1005)
162 KOG1058|consensus 96.6 0.16 3.5E-06 51.6 17.4 239 87-360 219-466 (948)
163 KOG4653|consensus 96.6 0.076 1.6E-06 54.6 15.4 224 121-355 731-962 (982)
164 KOG1078|consensus 96.6 0.24 5.2E-06 50.7 18.2 253 124-411 252-531 (865)
165 KOG4535|consensus 96.6 0.071 1.5E-06 51.3 13.8 272 132-415 270-562 (728)
166 KOG1943|consensus 96.5 0.28 6.1E-06 51.9 19.0 198 159-362 341-578 (1133)
167 PF08045 CDC14: Cell division 96.5 0.19 4E-06 45.3 15.5 100 133-232 107-208 (257)
168 KOG4653|consensus 96.5 0.15 3.2E-06 52.6 16.3 223 76-312 729-961 (982)
169 PF13764 E3_UbLigase_R4: E3 ub 96.5 1.5 3.3E-05 46.3 24.2 236 115-357 115-406 (802)
170 KOG3036|consensus 96.5 0.41 8.9E-06 42.2 16.7 197 74-276 26-250 (293)
171 PF06371 Drf_GBD: Diaphanous G 96.4 0.015 3.3E-07 50.3 8.1 111 74-187 66-186 (187)
172 KOG1991|consensus 96.4 0.5 1.1E-05 49.7 19.6 297 117-419 410-743 (1010)
173 PF05004 IFRD: Interferon-rela 96.4 0.46 1E-05 44.6 18.2 189 164-357 48-257 (309)
174 KOG0414|consensus 96.4 0.032 7E-07 59.1 11.1 160 117-298 919-1083(1251)
175 KOG4535|consensus 96.3 0.66 1.4E-05 45.0 18.4 101 257-357 362-462 (728)
176 KOG1820|consensus 96.3 0.2 4.4E-06 52.7 16.4 188 76-274 255-444 (815)
177 KOG3665|consensus 96.3 0.86 1.9E-05 47.8 21.0 196 182-410 494-695 (699)
178 KOG2956|consensus 96.3 0.22 4.7E-06 48.0 15.1 182 78-272 290-476 (516)
179 KOG2062|consensus 96.3 0.56 1.2E-05 47.8 18.5 200 119-357 451-653 (929)
180 PF11841 DUF3361: Domain of un 96.2 0.13 2.8E-06 42.5 12.0 120 241-361 8-135 (160)
181 PF05918 API5: Apoptosis inhib 96.2 0.35 7.5E-06 48.6 17.0 168 129-315 34-207 (556)
182 PF05918 API5: Apoptosis inhib 96.2 0.69 1.5E-05 46.5 18.9 266 75-366 60-354 (556)
183 PF02985 HEAT: HEAT repeat; I 96.1 0.0094 2E-07 34.6 3.4 29 160-188 1-29 (31)
184 KOG2032|consensus 96.0 0.58 1.2E-05 45.5 16.8 145 169-315 268-415 (533)
185 KOG2956|consensus 96.0 0.67 1.5E-05 44.8 16.7 147 202-357 330-477 (516)
186 PF14668 RICTOR_V: Rapamycin-i 95.9 0.047 1E-06 38.8 6.9 56 303-359 4-60 (73)
187 PF02985 HEAT: HEAT repeat; I 95.8 0.015 3.3E-07 33.7 3.4 29 329-357 1-29 (31)
188 PF06025 DUF913: Domain of Unk 95.7 0.46 1E-05 45.9 15.2 137 110-248 98-248 (379)
189 PF11865 DUF3385: Domain of un 95.7 0.14 3E-06 42.9 10.2 146 117-272 10-156 (160)
190 KOG3036|consensus 95.7 1.1 2.4E-05 39.6 15.5 145 87-233 92-249 (293)
191 KOG1243|consensus 95.7 0.082 1.8E-06 53.3 9.9 188 114-315 327-515 (690)
192 KOG1243|consensus 95.6 0.57 1.2E-05 47.6 15.6 256 77-356 257-514 (690)
193 PF01603 B56: Protein phosphat 95.6 0.63 1.4E-05 45.6 15.7 254 96-362 112-375 (409)
194 PF14668 RICTOR_V: Rapamycin-i 95.6 0.072 1.6E-06 37.9 6.7 66 134-201 4-70 (73)
195 PF12460 MMS19_C: RNAPII trans 95.5 2.8 6.1E-05 41.3 29.3 296 87-414 56-396 (415)
196 PF14500 MMS19_N: Dos2-interac 95.5 1.4 3E-05 40.2 16.8 223 78-317 3-239 (262)
197 KOG1566|consensus 95.5 0.85 1.8E-05 41.8 14.8 202 153-358 73-287 (342)
198 KOG1020|consensus 95.5 0.46 1E-05 52.2 15.2 171 219-417 794-965 (1692)
199 PF12719 Cnd3: Nuclear condens 95.3 0.54 1.2E-05 44.0 13.7 172 159-341 26-210 (298)
200 PF11701 UNC45-central: Myosin 95.3 0.073 1.6E-06 44.6 7.0 146 203-354 5-156 (157)
201 PF04078 Rcd1: Cell differenti 95.2 1.2 2.7E-05 40.0 14.6 186 172-360 8-221 (262)
202 PRK14707 hypothetical protein; 95.1 5.5 0.00012 45.9 21.9 266 127-408 258-525 (2710)
203 COG5098 Chromosome condensatio 95.0 0.14 3E-06 51.6 9.1 141 244-412 892-1037(1128)
204 PF01603 B56: Protein phosphat 95.0 1.4 3.1E-05 43.2 16.2 234 75-322 134-377 (409)
205 PF10363 DUF2435: Protein of u 94.9 0.093 2E-06 39.3 6.1 85 75-170 4-88 (92)
206 KOG1967|consensus 94.8 0.59 1.3E-05 48.8 13.1 186 119-311 817-1020(1030)
207 KOG2025|consensus 94.6 2.3 5.1E-05 43.4 16.3 128 217-353 61-189 (892)
208 COG5116 RPN2 26S proteasome re 94.5 0.63 1.4E-05 46.1 11.9 151 79-255 521-673 (926)
209 KOG2137|consensus 94.5 1.1 2.5E-05 45.6 14.1 236 86-341 285-521 (700)
210 PF12231 Rif1_N: Rap1-interact 94.5 5.1 0.00011 38.8 19.0 264 83-356 2-302 (372)
211 PLN03076 ARF guanine nucleotid 94.3 9.6 0.00021 44.3 22.2 274 85-368 1148-1505(1780)
212 KOG2137|consensus 94.2 0.4 8.7E-06 48.8 10.4 136 157-300 387-522 (700)
213 PRK14707 hypothetical protein; 94.2 13 0.00029 43.1 22.2 280 76-362 165-450 (2710)
214 COG5656 SXM1 Importin, protein 94.2 8.1 0.00017 39.9 20.5 235 116-357 407-670 (970)
215 KOG2032|consensus 94.1 6.3 0.00014 38.6 19.5 261 76-356 260-530 (533)
216 PF11701 UNC45-central: Myosin 94.1 0.34 7.4E-06 40.5 8.4 146 76-228 5-156 (157)
217 KOG2611|consensus 94.0 4.3 9.4E-05 39.6 16.1 131 122-256 16-164 (698)
218 COG5656 SXM1 Importin, protein 94.0 7 0.00015 40.4 18.1 276 73-357 407-711 (970)
219 COG5098 Chromosome condensatio 93.9 0.86 1.9E-05 46.2 11.8 173 82-276 861-1040(1128)
220 PF12530 DUF3730: Protein of u 93.8 4.8 0.0001 36.2 20.4 203 119-342 2-217 (234)
221 KOG2025|consensus 93.8 2.8 6.1E-05 42.8 15.0 106 116-227 84-189 (892)
222 PF11864 DUF3384: Domain of un 93.7 8.5 0.00018 38.6 24.7 249 87-357 42-330 (464)
223 PF04063 DUF383: Domain of unk 93.7 0.74 1.6E-05 39.8 9.8 80 258-338 72-157 (192)
224 KOG2611|consensus 93.7 7.6 0.00016 38.0 18.1 189 76-271 13-223 (698)
225 KOG1832|consensus 93.7 2.6 5.6E-05 44.2 14.7 102 258-359 623-775 (1516)
226 KOG1020|consensus 93.6 2.1 4.6E-05 47.4 14.7 141 201-356 816-959 (1692)
227 PF13251 DUF4042: Domain of un 93.4 2.3 4.9E-05 36.4 12.2 116 161-276 42-177 (182)
228 KOG3665|consensus 93.3 2.4 5.3E-05 44.5 14.6 195 140-353 494-693 (699)
229 KOG1820|consensus 93.0 3.2 6.9E-05 44.1 14.8 188 161-357 255-443 (815)
230 PF14500 MMS19_N: Dos2-interac 92.8 6.7 0.00014 35.9 15.2 219 122-358 4-238 (262)
231 PF08506 Cse1: Cse1; InterPro 92.8 2.6 5.7E-05 40.6 13.0 148 196-352 205-370 (370)
232 KOG2999|consensus 92.7 5 0.00011 39.8 14.6 164 119-284 85-254 (713)
233 PF11864 DUF3384: Domain of un 92.7 12 0.00026 37.5 22.9 244 88-359 4-287 (464)
234 COG5218 YCG1 Chromosome conden 92.4 2.5 5.4E-05 42.2 12.2 120 266-407 73-194 (885)
235 KOG1566|consensus 92.2 9.5 0.00021 35.3 18.5 210 195-417 73-291 (342)
236 PF04063 DUF383: Domain of unk 92.2 1 2.2E-05 39.0 8.5 103 129-234 7-135 (192)
237 KOG1949|consensus 92.1 1.6 3.5E-05 44.4 10.7 184 120-314 177-369 (1005)
238 PF08167 RIX1: rRNA processing 91.9 2.2 4.7E-05 36.0 10.1 113 159-275 25-145 (165)
239 PF12830 Nipped-B_C: Sister ch 91.8 7.7 0.00017 33.4 15.2 147 75-232 9-168 (187)
240 KOG2933|consensus 91.7 2.1 4.5E-05 39.4 10.1 109 244-358 88-200 (334)
241 smart00638 LPD_N Lipoprotein N 91.7 18 0.00039 37.3 19.4 134 202-355 394-543 (574)
242 PF01347 Vitellogenin_N: Lipop 91.5 14 0.00031 38.5 17.9 170 160-354 396-586 (618)
243 PF10363 DUF2435: Protein of u 91.4 1.2 2.6E-05 33.4 7.0 72 288-361 5-76 (92)
244 PF06371 Drf_GBD: Diaphanous G 91.2 1.4 2.9E-05 38.0 8.5 81 275-356 96-186 (187)
245 KOG0891|consensus 91.1 3 6.4E-05 49.3 13.0 267 83-358 490-764 (2341)
246 COG5218 YCG1 Chromosome conden 91.1 14 0.0003 37.3 15.6 104 239-350 86-192 (885)
247 PF07814 WAPL: Wings apart-lik 91.1 8.8 0.00019 37.0 14.6 238 119-367 23-309 (361)
248 PF13251 DUF4042: Domain of un 91.0 4.2 9.1E-05 34.8 10.9 138 218-358 2-175 (182)
249 PF14225 MOR2-PAG1_C: Cell mor 90.9 12 0.00027 34.1 16.4 178 162-357 67-254 (262)
250 PF01347 Vitellogenin_N: Lipop 90.8 3.4 7.3E-05 43.1 12.5 148 202-367 396-563 (618)
251 PF11707 Npa1: Ribosome 60S bi 90.5 8.3 0.00018 36.7 13.7 157 161-317 58-239 (330)
252 smart00638 LPD_N Lipoprotein N 90.5 6.1 0.00013 40.8 13.9 134 159-312 393-542 (574)
253 PF07814 WAPL: Wings apart-lik 89.5 21 0.00045 34.4 17.5 93 161-254 23-116 (361)
254 cd03568 VHS_STAM VHS domain fa 89.4 2 4.3E-05 35.3 7.4 92 329-432 38-140 (144)
255 PF08324 PUL: PUL domain; Int 89.3 5.9 0.00013 36.3 11.4 160 119-280 65-238 (268)
256 PF06685 DUF1186: Protein of u 89.2 16 0.00036 32.9 15.6 135 132-290 57-201 (249)
257 KOG2999|consensus 88.9 27 0.00059 35.0 19.3 156 161-318 85-245 (713)
258 KOG1949|consensus 88.9 22 0.00048 36.7 15.3 201 110-315 122-331 (1005)
259 cd03572 ENTH_epsin_related ENT 88.9 7.6 0.00016 30.8 10.0 101 304-414 19-121 (122)
260 PF12074 DUF3554: Domain of un 88.8 8.7 0.00019 36.6 12.6 213 114-338 19-254 (339)
261 KOG2005|consensus 88.7 12 0.00026 38.2 13.3 145 73-233 414-560 (878)
262 PF08506 Cse1: Cse1; InterPro 88.6 11 0.00024 36.4 13.0 128 131-268 225-370 (370)
263 KOG2933|consensus 88.5 2.1 4.5E-05 39.3 7.4 141 161-314 90-233 (334)
264 KOG4464|consensus 88.2 17 0.00036 35.0 13.3 154 204-358 48-232 (532)
265 PF04388 Hamartin: Hamartin pr 88.1 15 0.00032 38.6 14.5 138 74-233 4-142 (668)
266 KOG1848|consensus 87.6 10 0.00022 42.0 12.9 59 348-411 1073-1131(1610)
267 PF12530 DUF3730: Protein of u 86.6 23 0.00051 31.7 18.6 201 77-299 3-216 (234)
268 PF14225 MOR2-PAG1_C: Cell mor 86.4 26 0.00056 32.0 19.0 219 78-316 11-255 (262)
269 PF08167 RIX1: rRNA processing 86.4 16 0.00035 30.7 11.4 111 117-232 25-144 (165)
270 cd03569 VHS_Hrs_Vps27p VHS dom 86.2 3.1 6.7E-05 34.1 6.7 75 72-146 39-114 (142)
271 COG5209 RCD1 Uncharacterized p 86.2 13 0.00028 32.7 10.5 98 261-359 117-220 (315)
272 PF11865 DUF3385: Domain of un 85.9 7.8 0.00017 32.4 9.1 145 159-314 10-156 (160)
273 KOG0413|consensus 85.8 3.6 7.7E-05 43.6 8.1 131 173-317 945-1075(1529)
274 cd03568 VHS_STAM VHS domain fa 85.7 3.4 7.4E-05 33.9 6.7 75 72-146 35-110 (144)
275 cd03561 VHS VHS domain family; 85.2 13 0.00028 30.0 9.9 94 255-357 15-112 (133)
276 COG5209 RCD1 Uncharacterized p 85.2 4.9 0.00011 35.2 7.5 143 88-232 114-269 (315)
277 cd03569 VHS_Hrs_Vps27p VHS dom 84.9 7.3 0.00016 31.9 8.3 75 159-233 41-116 (142)
278 PF08324 PUL: PUL domain; Int 84.4 3.9 8.4E-05 37.5 7.4 132 214-346 122-263 (268)
279 PF10521 DUF2454: Protein of u 84.4 18 0.00039 33.5 11.7 138 117-256 119-277 (282)
280 PF11538 Snurportin1: Snurport 84.2 0.67 1.4E-05 28.4 1.4 38 9-48 2-39 (40)
281 KOG3132|consensus 84.1 0.56 1.2E-05 41.0 1.4 47 9-56 25-71 (325)
282 KOG1788|consensus 84.0 49 0.0011 36.1 15.2 256 95-357 663-982 (2799)
283 PF12830 Nipped-B_C: Sister ch 83.7 25 0.00055 30.2 11.6 123 241-368 5-133 (187)
284 PF04869 Uso1_p115_head: Uso1 83.0 42 0.0009 31.6 13.5 154 130-314 51-230 (312)
285 PF14726 RTTN_N: Rotatin, an a 82.9 18 0.0004 27.4 9.4 70 326-409 28-97 (98)
286 PF12074 DUF3554: Domain of un 82.8 45 0.00097 31.8 15.5 217 134-362 4-240 (339)
287 PF12031 DUF3518: Domain of un 82.8 3.8 8.3E-05 36.3 6.0 82 89-172 139-229 (257)
288 cd03561 VHS VHS domain family; 82.3 8.3 0.00018 31.1 7.6 75 72-146 35-112 (133)
289 smart00288 VHS Domain present 81.7 6.5 0.00014 31.8 6.8 75 72-146 35-111 (133)
290 KOG1822|consensus 81.5 1.2E+02 0.0025 35.6 17.8 231 74-315 876-1127(2067)
291 cd03567 VHS_GGA VHS domain fam 81.0 7.4 0.00016 31.7 6.9 74 73-146 37-116 (139)
292 PF12054 DUF3535: Domain of un 80.9 62 0.0014 32.1 16.2 217 88-314 101-341 (441)
293 KOG2005|consensus 80.3 52 0.0011 33.9 13.5 74 288-368 642-716 (878)
294 smart00288 VHS Domain present 79.6 15 0.00032 29.7 8.2 74 159-232 37-112 (133)
295 PF11707 Npa1: Ribosome 60S bi 79.6 58 0.0012 30.9 20.6 157 119-276 58-240 (330)
296 PF10274 ParcG: Parkin co-regu 78.8 41 0.00088 28.8 11.2 81 241-322 35-116 (183)
297 PF13001 Ecm29: Proteasome sta 78.6 28 0.00061 35.2 11.6 221 170-415 248-491 (501)
298 PF12726 SEN1_N: SEN1 N termin 78.5 33 0.00071 36.6 12.7 144 76-233 443-587 (727)
299 PF11791 Aconitase_B_N: Aconit 77.3 20 0.00042 29.4 8.0 45 302-357 79-123 (154)
300 KOG0413|consensus 77.2 14 0.00031 39.4 8.9 127 216-358 945-1074(1529)
301 PF10521 DUF2454: Protein of u 76.9 30 0.00064 32.1 10.5 72 74-145 119-202 (282)
302 KOG1525|consensus 76.5 1.4E+02 0.0031 33.8 24.0 126 285-412 258-405 (1266)
303 KOG4464|consensus 76.4 38 0.00083 32.7 10.7 103 299-413 110-229 (532)
304 PF13001 Ecm29: Proteasome sta 76.2 81 0.0018 32.0 14.1 149 117-274 272-444 (501)
305 KOG0392|consensus 76.1 35 0.00076 37.8 11.5 235 72-317 75-327 (1549)
306 PF08389 Xpo1: Exportin 1-like 76.1 13 0.00029 30.1 7.3 127 217-352 3-148 (148)
307 PF12031 DUF3518: Domain of un 75.3 21 0.00046 31.8 8.3 84 216-299 138-229 (257)
308 KOG1988|consensus 75.3 1.2E+02 0.0026 32.4 15.3 251 76-357 26-281 (970)
309 KOG1993|consensus 74.4 1.2E+02 0.0027 32.1 21.7 234 128-368 626-875 (978)
310 KOG2199|consensus 74.4 41 0.00089 32.2 10.3 95 254-357 22-118 (462)
311 PF00790 VHS: VHS domain; Int 72.5 40 0.00087 27.4 9.1 84 159-242 42-129 (140)
312 PLN03076 ARF guanine nucleotid 72.1 2.2E+02 0.0047 33.9 21.3 184 127-315 1147-1376(1780)
313 cd03567 VHS_GGA VHS domain fam 71.8 53 0.0012 26.7 9.6 95 254-357 15-116 (139)
314 PF10274 ParcG: Parkin co-regu 71.8 42 0.00092 28.7 9.1 75 74-149 38-112 (183)
315 PF04821 TIMELESS: Timeless pr 71.3 84 0.0018 28.8 13.9 60 74-146 13-72 (266)
316 KOG0301|consensus 71.1 1.3E+02 0.0029 31.1 18.7 50 301-351 690-740 (745)
317 KOG1788|consensus 70.6 1.1E+02 0.0024 33.6 13.3 241 83-339 476-731 (2799)
318 cd08050 TAF6 TATA Binding Prot 70.3 30 0.00064 33.1 8.9 99 77-187 181-296 (343)
319 PF12783 Sec7_N: Guanine nucle 69.1 45 0.00098 28.0 9.0 108 88-198 36-156 (168)
320 PF12231 Rif1_N: Rap1-interact 68.9 1.2E+02 0.0025 29.5 19.8 224 172-412 59-303 (372)
321 KOG1832|consensus 68.7 36 0.00078 36.2 9.3 165 109-285 593-784 (1516)
322 KOG1822|consensus 68.6 2.5E+02 0.0054 33.2 17.8 233 119-358 878-1128(2067)
323 PF12726 SEN1_N: SEN1 N termin 68.5 57 0.0012 34.8 11.5 57 259-315 496-553 (727)
324 KOG1993|consensus 68.2 1.7E+02 0.0037 31.1 22.3 325 74-412 526-883 (978)
325 PF08711 Med26: TFIIS helical 68.0 13 0.00028 24.4 4.3 35 376-410 13-48 (53)
326 PF04388 Hamartin: Hamartin pr 67.9 1.6E+02 0.0035 31.1 14.4 157 159-337 4-161 (668)
327 smart00509 TFS2N Domain in the 67.1 30 0.00065 24.7 6.3 39 373-411 32-70 (75)
328 PF08216 CTNNBL: Catenin-beta- 67.0 7.8 0.00017 29.8 3.4 44 261-305 63-106 (108)
329 PF14726 RTTN_N: Rotatin, an a 66.1 56 0.0012 24.8 9.0 93 89-183 2-95 (98)
330 PF00790 VHS: VHS domain; Int 64.7 11 0.00024 30.7 4.2 73 73-145 41-117 (140)
331 smart00567 EZ_HEAT E-Z type HE 64.1 9 0.0002 21.5 2.6 28 132-170 2-29 (30)
332 PF04869 Uso1_p115_head: Uso1 63.6 1.2E+02 0.0027 28.5 11.4 103 255-357 108-231 (312)
333 COG5110 RPN1 26S proteasome re 62.7 1.8E+02 0.0039 29.5 18.1 221 119-361 452-709 (881)
334 cd08050 TAF6 TATA Binding Prot 62.5 1E+02 0.0022 29.5 10.9 111 201-313 210-338 (343)
335 PF12463 DUF3689: Protein of u 61.9 1.4E+02 0.003 27.9 13.9 127 153-279 3-179 (303)
336 KOG2038|consensus 61.1 2.3E+02 0.0049 30.1 15.9 117 242-368 302-422 (988)
337 KOG1791|consensus 60.7 1.5E+02 0.0033 34.0 12.5 206 150-356 1430-1659(1758)
338 PF12397 U3snoRNP10: U3 small 60.6 80 0.0017 24.7 9.9 70 242-317 4-76 (121)
339 PF06012 DUF908: Domain of Unk 59.8 57 0.0012 31.0 8.7 65 132-197 237-306 (329)
340 PF14666 RICTOR_M: Rapamycin-i 59.5 1.3E+02 0.0028 26.8 12.4 129 216-356 78-224 (226)
341 KOG2549|consensus 59.1 2.1E+02 0.0045 29.0 12.6 124 75-211 208-349 (576)
342 PF09324 DUF1981: Domain of un 58.3 22 0.00047 26.2 4.4 67 198-269 14-84 (86)
343 KOG0392|consensus 58.3 1.4E+02 0.003 33.5 11.7 184 216-416 143-329 (1549)
344 cd00197 VHS_ENTH_ANTH VHS, ENT 58.3 54 0.0012 25.4 7.0 72 74-145 37-114 (115)
345 KOG2676|consensus 58.2 10 0.00023 35.6 3.2 57 305-361 375-433 (478)
346 KOG2549|consensus 55.6 2.3E+02 0.0051 28.7 11.9 137 165-313 213-368 (576)
347 PF04499 SAPS: SIT4 phosphatas 55.3 1.4E+02 0.003 30.0 10.8 102 285-390 20-125 (475)
348 PF04499 SAPS: SIT4 phosphatas 54.1 72 0.0016 32.0 8.5 78 110-187 55-147 (475)
349 PF08713 DNA_alkylation: DNA a 53.9 87 0.0019 27.2 8.5 137 207-368 57-195 (213)
350 PF06743 FAST_1: FAST kinase-l 53.7 48 0.001 23.3 5.4 67 221-289 3-69 (71)
351 PF08216 CTNNBL: Catenin-beta- 53.6 18 0.00038 27.9 3.3 41 135-176 64-104 (108)
352 KOG4524|consensus 53.0 58 0.0013 35.1 7.8 98 239-338 798-899 (1014)
353 PF07923 N1221: N1221-like pro 52.8 44 0.00096 31.1 6.6 60 328-393 60-126 (293)
354 PF09758 FPL: Uncharacterised 52.7 87 0.0019 25.8 7.3 124 148-271 15-147 (149)
355 cd03565 VHS_Tom1 VHS domain fa 51.5 87 0.0019 25.5 7.3 75 72-146 36-115 (141)
356 PF03378 CAS_CSE1: CAS/CSE pro 51.4 2.6E+02 0.0056 27.8 13.8 104 172-276 43-149 (435)
357 PF01365 RYDR_ITPR: RIH domain 50.2 87 0.0019 27.3 7.7 109 301-412 76-188 (207)
358 KOG2073|consensus 49.7 2.1E+02 0.0046 30.9 11.4 73 96-168 164-248 (838)
359 smart00802 UME Domain in UVSB 49.2 61 0.0013 25.0 5.7 78 286-368 11-95 (107)
360 KOG0803|consensus 49.0 4.7E+02 0.01 30.1 17.7 257 74-338 41-330 (1312)
361 PF12463 DUF3689: Protein of u 47.8 2.4E+02 0.0052 26.4 12.3 128 195-322 3-180 (303)
362 PF08713 DNA_alkylation: DNA a 47.7 1.9E+02 0.004 25.1 12.0 140 121-285 55-196 (213)
363 PF04821 TIMELESS: Timeless pr 47.7 2.2E+02 0.0049 26.0 12.4 58 301-358 135-209 (266)
364 KOG0301|consensus 47.5 3.5E+02 0.0076 28.2 16.6 38 257-295 688-725 (745)
365 KOG2676|consensus 47.3 25 0.00053 33.2 3.8 63 137-199 376-440 (478)
366 PF08389 Xpo1: Exportin 1-like 47.0 53 0.0012 26.4 5.6 62 245-310 83-148 (148)
367 KOG2229|consensus 46.0 3.3E+02 0.0071 27.4 14.6 125 286-415 236-385 (616)
368 KOG4337|consensus 45.7 3.7E+02 0.0081 28.0 21.5 261 22-324 328-603 (896)
369 cd00183 TFIIS_I N-terminal dom 45.3 53 0.0011 23.5 4.6 36 376-411 37-72 (76)
370 cd06561 AlkD_like A new struct 44.9 1.3E+02 0.0028 25.8 8.0 72 289-366 108-179 (197)
371 PF06012 DUF908: Domain of Unk 44.8 1.2E+02 0.0025 28.9 8.2 72 264-335 239-323 (329)
372 PF09758 FPL: Uncharacterised 44.7 1E+02 0.0022 25.4 6.6 123 191-313 16-147 (149)
373 PF07923 N1221: N1221-like pro 44.5 40 0.00086 31.4 4.9 54 285-338 59-126 (293)
374 PF14663 RasGEF_N_2: Rapamycin 43.8 61 0.0013 25.3 5.1 31 160-190 9-39 (115)
375 KOG2149|consensus 43.2 2.4E+02 0.0051 27.4 9.6 133 202-338 59-192 (393)
376 PF09324 DUF1981: Domain of un 43.2 70 0.0015 23.5 5.1 67 283-353 14-84 (86)
377 PF12765 Cohesin_HEAT: HEAT re 43.1 19 0.00041 22.4 1.7 41 267-310 2-42 (42)
378 PF01417 ENTH: ENTH domain; I 43.0 1.7E+02 0.0036 23.1 7.9 94 301-412 18-121 (125)
379 PF06685 DUF1186: Protein of u 42.6 2.6E+02 0.0057 25.3 17.8 72 243-326 72-153 (249)
380 PF14666 RICTOR_M: Rapamycin-i 42.3 2.5E+02 0.0054 25.0 13.2 129 258-411 78-224 (226)
381 PF08454 RIH_assoc: RyR and IP 42.1 1.6E+02 0.0034 22.8 7.0 41 299-339 66-107 (109)
382 PF03130 HEAT_PBS: PBS lyase H 41.2 35 0.00076 18.7 2.5 14 344-357 1-14 (27)
383 PF11791 Aconitase_B_N: Aconit 40.7 1.4E+02 0.003 24.6 6.7 48 261-319 80-127 (154)
384 PF15178 TOM_sub5: Mitochondri 40.7 40 0.00087 21.3 2.8 19 19-37 11-30 (51)
385 PF11894 DUF3414: Protein of u 40.5 4.7E+02 0.01 31.3 13.7 63 135-197 582-648 (1691)
386 PF14631 FancD2: Fanconi anaem 39.7 4.6E+02 0.01 30.6 12.9 151 200-357 430-587 (1426)
387 PF08767 CRM1_C: CRM1 C termin 39.6 3.3E+02 0.0072 25.7 14.6 180 174-356 42-243 (319)
388 PF14663 RasGEF_N_2: Rapamycin 39.6 1.8E+02 0.0039 22.6 10.0 102 287-413 9-111 (115)
389 KOG2149|consensus 39.4 2.8E+02 0.006 26.9 9.4 113 245-359 59-172 (393)
390 KOG0891|consensus 38.6 2E+02 0.0043 35.1 10.0 199 117-318 565-766 (2341)
391 cd03572 ENTH_epsin_related ENT 38.4 2E+02 0.0044 22.8 9.7 86 266-356 23-118 (122)
392 KOG1087|consensus 38.1 79 0.0017 31.5 5.9 72 73-144 37-110 (470)
393 KOG4231|consensus 37.7 48 0.001 33.0 4.2 72 286-357 328-399 (763)
394 PF01365 RYDR_ITPR: RIH domain 37.5 98 0.0021 27.0 6.0 95 132-232 76-170 (207)
395 cd00197 VHS_ENTH_ANTH VHS, ENT 37.0 1.9E+02 0.0042 22.2 9.7 71 329-411 38-114 (115)
396 PF08064 UME: UME (NUC010) dom 36.6 1.4E+02 0.0031 22.9 6.1 78 286-368 11-95 (107)
397 PF03378 CAS_CSE1: CAS/CSE pro 36.4 4.4E+02 0.0096 26.2 16.3 164 198-368 114-284 (435)
398 KOG1924|consensus 36.3 5.7E+02 0.012 27.4 11.7 116 288-410 236-362 (1102)
399 PF13925 Katanin_con80: con80 36.3 2.6E+02 0.0056 23.4 8.6 75 201-277 28-102 (164)
400 PF12783 Sec7_N: Guanine nucle 36.2 2.5E+02 0.0055 23.3 9.2 80 280-360 67-149 (168)
401 KOG2022|consensus 33.7 6.5E+02 0.014 27.4 13.4 134 173-316 481-620 (982)
402 KOG4524|consensus 33.7 1.2E+02 0.0025 32.9 6.5 95 159-254 803-899 (1014)
403 KOG1848|consensus 33.2 5.3E+02 0.011 29.6 11.3 164 169-341 852-1029(1610)
404 KOG1992|consensus 33.2 6.5E+02 0.014 27.2 21.9 157 74-233 498-670 (960)
405 KOG2199|consensus 33.0 2.2E+02 0.0048 27.5 7.6 92 159-250 45-137 (462)
406 PF14631 FancD2: Fanconi anaem 32.4 8.8E+02 0.019 28.4 18.5 150 117-274 431-588 (1426)
407 KOG2140|consensus 31.8 4.3E+02 0.0093 26.8 9.5 50 289-343 241-290 (739)
408 KOG4337|consensus 31.4 6.3E+02 0.014 26.4 11.4 36 243-278 358-394 (896)
409 KOG2038|consensus 30.8 6.9E+02 0.015 26.8 18.2 92 85-187 315-408 (988)
410 KOG2374|consensus 30.3 2.4E+02 0.0052 28.1 7.5 112 289-410 9-123 (661)
411 KOG2085|consensus 30.3 5.3E+02 0.012 25.3 15.0 77 110-187 170-247 (457)
412 KOG2085|consensus 30.0 5.4E+02 0.012 25.2 11.6 42 148-189 166-207 (457)
413 KOG2011|consensus 29.4 3.6E+02 0.0077 30.0 9.4 135 127-270 297-432 (1048)
414 PF12030 DUF3517: Domain of un 28.1 5.3E+02 0.012 24.6 15.9 53 181-233 4-58 (337)
415 PF04510 DUF577: Family of unk 27.8 3.8E+02 0.0082 22.7 10.1 122 284-412 40-164 (174)
416 PF05997 Nop52: Nucleolar prot 27.2 3.2E+02 0.0069 24.1 7.5 67 78-146 4-72 (217)
417 cd01882 BMS1 Bms1. Bms1 is an 27.1 26 0.00057 31.1 0.6 23 27-49 11-33 (225)
418 PF02344 Myc-LZ: Myc leucine z 26.7 1.3E+02 0.0029 17.3 3.1 18 8-31 3-20 (32)
419 PF08623 TIP120: TATA-binding 26.5 4E+02 0.0086 22.5 8.4 93 216-313 41-145 (169)
420 COG5101 CRM1 Importin beta-rel 24.6 8.3E+02 0.018 25.6 15.4 113 161-276 483-602 (1053)
421 KOG0889|consensus 24.6 1E+03 0.022 30.6 12.5 182 158-340 1125-1331(3550)
422 cd07920 Pumilio Pumilio-family 23.9 5.9E+02 0.013 23.6 19.2 28 384-411 279-306 (322)
423 PF12397 U3snoRNP10: U3 small 23.8 3.5E+02 0.0076 21.0 10.6 70 202-275 7-76 (121)
424 PLN03205 ATR interacting prote 23.7 3.5E+02 0.0076 26.3 7.2 115 242-356 321-445 (652)
425 PF04064 DUF384: Domain of unk 23.6 2.4E+02 0.0052 19.0 5.4 45 374-418 10-55 (58)
426 PF07539 DRIM: Down-regulated 22.7 1.1E+02 0.0025 24.9 3.5 25 386-410 20-44 (141)
427 COG5095 TAF6 Transcription ini 22.3 6.5E+02 0.014 23.6 8.5 133 169-313 208-357 (450)
428 cd03565 VHS_Tom1 VHS domain fa 22.2 4.3E+02 0.0093 21.4 9.0 74 160-233 39-117 (141)
429 PF01465 GRIP: GRIP domain; I 21.8 2.2E+02 0.0049 18.0 4.1 33 290-322 11-43 (46)
430 TIGR00117 acnB aconitate hydra 21.5 4E+02 0.0086 28.8 7.9 43 303-356 83-125 (844)
431 PF13925 Katanin_con80: con80 21.3 4.9E+02 0.011 21.7 8.2 69 117-187 28-97 (164)
432 KOG2256|consensus 21.3 9.5E+02 0.021 25.1 11.9 153 169-338 292-474 (661)
433 KOG4231|consensus 20.7 1.1E+02 0.0024 30.5 3.5 61 127-187 338-398 (763)
434 COG2914 Uncharacterized protei 20.3 48 0.001 24.8 0.7 34 4-37 64-97 (99)
435 PRK13266 Thf1-like protein; Re 20.2 6.2E+02 0.014 22.5 8.1 101 101-201 39-147 (225)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-84 Score=569.56 Aligned_cols=433 Identities=45% Similarity=0.736 Sum_probs=394.1
Q ss_pred CCcchhhHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHhhhhHHHHhhccccc-cccchhhhccccCCCCCCcccCCHHH
Q psy9169 1 MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQ-LDEIEEENVTVIEPTCMSPIKMTVPE 78 (440)
Q Consensus 1 ~~~~~~~~~r~~~~k~~~~-~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (440)
|..+|.|+.|+.+||.+|+ .++|+||+|++.++||||+||+|.|.||||+.. +++...... ++.|. ...-+|.
T Consensus 1 ~~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i----~meqq-~~~elp~ 75 (526)
T COG5064 1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFI----PMEQQ-FYSELPQ 75 (526)
T ss_pred CCcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccC----chhHH-hhhhhHH
Confidence 4678999999999999997 589999999999999999999999999999832 222111100 11111 2235799
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN 157 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~ 157 (440)
|.+.|.|+|.+.|+.|+..+|+++|.+.+||++.++++|++|+|++++ .....-++++|+|+|+|+++++..++..+++
T Consensus 76 lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd 155 (526)
T COG5064 76 LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD 155 (526)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe
Confidence 999999999999999999999999999999999999999999999999 7777889999999999999999999999999
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHHhhhhCCCCC
Q psy9169 158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
+|++|.++++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++.++. +.+++++++|+|+|||++++|+
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998655 3699999999999999999999
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
+........+|.|.+++++.|+++..+|||+|+||++++.+.++.+++.|+.++|+++|.|++..++.+|++.+|||++|
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------
Q psy9169 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------- 368 (440)
Q Consensus 317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------------------- 368 (440)
++.+++.++++|+++.+..+|+++...+|++|||+++||++|+.+|++++++
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------cC---------cchHHHHHHHHcCcHHHHHHH
Q psy9169 369 ------------------------------------------------EG---------ELNQMALLVEESGGLEKLEAL 391 (440)
Q Consensus 369 ------------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L 391 (440)
.| ..+.|..++++.||+++|..+
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~ 475 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGL 475 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHh
Confidence 11 156789999999999999999
Q ss_pred hcCCcHHHHHHHHHHHHhhCCCCccccc----cCCCccccCCCCCCCCCCCC
Q psy9169 392 QHHENETVYQKCYKIISMAFNDSAENSI----ENGDTIEFNPQPVNTVNGFN 439 (440)
Q Consensus 392 ~~~~~~~v~~~a~~il~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 439 (440)
|.+.|.+||.+|++||++||++|+.-|+ ..++.|.|+++.. ++|.||
T Consensus 476 Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~-~qg~f~ 526 (526)
T COG5064 476 QDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN-QQGNFN 526 (526)
T ss_pred hhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc-ccCCCC
Confidence 9999999999999999999987754333 5678999998764 665554
No 2
>KOG0166|consensus
Probab=100.00 E-value=1.4e-79 Score=580.57 Aligned_cols=428 Identities=49% Similarity=0.810 Sum_probs=388.1
Q ss_pred hhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhc
Q psy9169 5 VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK 84 (440)
Q Consensus 5 ~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~ 84 (440)
.-+..|.++||++++|++|+||||++..+|+||+||+|.+.|||+....... +... +.........+.++..+.
T Consensus 3 ~~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~ 76 (514)
T KOG0166|consen 3 GSSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML-DELL-----SDSQSQASNLELMLAALY 76 (514)
T ss_pred chhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc-cccc-----chhHHHhhhhHHHHHHHh
Confidence 3456889999999999999999999999999999999999999993211110 0000 000011233788899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHH
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPK 163 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~ 163 (440)
|+++..+..++..++++++...+|+++.++.+|++|.||++| .+.++.+|++|+|+|+|||+++++++..+++.|++|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 999999999999999999999889999999999999999999 6778999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHh
Q psy9169 164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 243 (440)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 243 (440)
|+.++.+++..++++|+|+|||++++++.+|+.++..|++++|+.++.......++++++|+|+|||++++|.+.+..+.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999988867999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169 244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 323 (440)
Q Consensus 244 ~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (440)
.++|.|..++++.|+++..++||+++||++++.+.++.+++.|++++|+.+|.+++..++.+|++++|||++|++.+++.
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------------
Q psy9169 324 VIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------- 368 (440)
Q Consensus 324 l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------------------------- 368 (440)
++++|+++.|..++. ++...++++|||+|+||++|+++|++++++
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 999999999999999 556679999999999999999999999999
Q ss_pred ----------------------------------------cCc---c---hHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169 369 ----------------------------------------EGE---L---NQMALLVEESGGLEKLEALQHHENETVYQK 402 (440)
Q Consensus 369 ----------------------------------------~~~---~---~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~ 402 (440)
.|+ . +.++.+|+++||+++|+.||.|.|.+||++
T Consensus 397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~ 476 (514)
T KOG0166|consen 397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKK 476 (514)
T ss_pred HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHH
Confidence 111 1 889999999999999999999999999999
Q ss_pred HHHHHHhhCCCCccccc--cCCCccccCCCCCCCCCCCCC
Q psy9169 403 CYKIISMAFNDSAENSI--ENGDTIEFNPQPVNTVNGFNF 440 (440)
Q Consensus 403 a~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 440 (440)
|++||++||.+|++++. .+.++|.|+.+ . |.++|||
T Consensus 477 A~~II~~yf~~e~~~~~~~~~~~~~~~~~~-~-~~~~f~f 514 (514)
T KOG0166|consen 477 AYKIIDTYFSEEDDEDDQQPTTSQFTFQVQ-A-PDGGFNF 514 (514)
T ss_pred HHHHHHHhcCCCcccccccccccccccCCC-C-CCCCCCC
Confidence 99999999998866654 22337787777 5 8899999
No 3
>KOG0166|consensus
Probab=100.00 E-value=1.2e-41 Score=322.70 Aligned_cols=289 Identities=27% Similarity=0.450 Sum_probs=265.1
Q ss_pred cCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...+|.+|+.|. ..++.+|++|+|+|.+++++.. .....++++|++|.|+.++.+++..++.+|+|+|+|++.+++.+
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts-e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS-EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCch-hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 478999999997 5569999999999999998876 55788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+..+++.|+++.|+.++..+.. .+..++.|+|+|+|.+....-.......++|.|..++.+.+ .+++..+||++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Confidence 9999999999999999998874 78899999999999765222233334568999999999888 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRT 309 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~ 309 (440)
.+.++..++....+++|.|+++|.+.++.++..|+.+++|++.+++...+.+++.|++|.|..+|. ++...++.+|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 999888999999999999999999999999999999999999999999999999999999999998 5666799999999
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHHH
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQI 363 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~ 363 (440)
|+||+.|+.++++.++++|++|.|+.+|++.+.++|+||+|+++|++.+ +++|+
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi 400 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI 400 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence 9999999999999999999999999999999999999999999999974 55554
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-41 Score=296.77 Aligned_cols=284 Identities=26% Similarity=0.373 Sum_probs=260.6
Q ss_pred cCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGM-KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...+|.+++++ .+.....+++|+|+|.++.|+.. .....++++|++|.|+.+|.+.+.+++.+++|+|+|+|.+++.+
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt-~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT-QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc-cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 46789999999 56778899999999999998876 45678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 152 TMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
++.+++.|++.+++.+|.+.. ..+...+.|+|+|+|......-+.-.-...+|.|.+++...+ ++++..|||++++|
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D-~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHh
Confidence 999999999999999998765 588899999999999653322244444567999999998877 89999999999999
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
+.++..........++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...++.+|||+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 99988888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|+||.+|+.++++.+++++++|+|+++|.+.+..++++|||+++|.+.|
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999976
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=312.77 Aligned_cols=327 Identities=19% Similarity=0.219 Sum_probs=279.5
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...++.++.+|.++++..|..|++++.++++... .++..+++.|++|.|+++|. .+++.+|++|+|+|+||+++++++
T Consensus 188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 4689999999999999999999999987876544 46889999999999999995 456799999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHHHH---HhcCChHHHHh
Q psy9169 152 TMTVINANAIPKFLQLLSSPH---------LNLAEQATWALGNIAGDGAR-----------ARDLL---LGLGTMPQILA 208 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~i~~L~~ 208 (440)
+..+++.|++|.|+.++.+++ ..++++|+|+|+|||++.+. .|+.. ...|++++++.
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 999999999999999998655 34699999999999987543 22222 35688888888
Q ss_pred hhCCCCcHHHH---HHHHHHHHhhhhCCCCCCCHHH-------------------HhhHHHHHHHhhcCCCHHHHHHHHH
Q psy9169 209 LVQPNTPTTFL---RNIVWAISNLCRNKNPAPDFEK-------------------IKICLPLLNQLIHTTDVETLSDICW 266 (440)
Q Consensus 209 ll~~~~~~~~~---~~a~~~L~~l~~~~~~~~~~~~-------------------~~~~~~~L~~ll~~~d~~i~~~a~~ 266 (440)
++..+...... ..++|+|.+|++++++...... ..++++.|+.++...+.+++.+++|
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 88765422212 3678999999998865542211 1245678888999889999999999
Q ss_pred HHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHH
Q psy9169 267 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK 346 (440)
Q Consensus 267 ~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~ 346 (440)
+|.+++.++.+.++.+.+.|++|.|+++|.+++..++..|+++|+||+.++++++..++++|++|.|+++|.++++.+++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
+|+|+|+|++.++.+ ....+.+.|+++.|..++.++++++++.|.++|.++...
T Consensus 507 eAawAL~NLa~~~~q-------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 507 DSATVLWNLCCHSED-------------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHHHHHhCCcHH-------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 999999999986433 255667889999999999999999999999999888643
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=296.87 Aligned_cols=339 Identities=17% Similarity=0.192 Sum_probs=292.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+.+|.+.+.+.|..++++|..++..+. ..++.+++.|++|.|+++|.++++.+|..|+|+|++++.++++++.
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999999998865443 5688999999999999999888999999999999999999899999
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.+++.|++|.|+++|.+++.+++++|+|+|+|++.+++..+..+...|++++|+++|.+++ ...+..++|+|.+|..+.
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988888888888999999999999886 899999999999997543
Q ss_pred CCCC---------------------------------C----HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 234 NPAP---------------------------------D----FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 234 ~~~~---------------------------------~----~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+... + .....+++|.|++++.++++.++..|+|+|.+++.+..
T Consensus 562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence 2110 0 00124689999999999999999999999999999999
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
+..+.++..|++++++.+|.+.+.+++..|+|+|+|++.+. ..+...+++.|++++|+++|.+++..++..|+.+|.|+
T Consensus 642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 98899999999999999999999999999999999999644 44566788999999999999988888888888888888
Q ss_pred hcCChHHHHHHhh-------------------------------------------------------------------
Q psy9169 356 TAGNSRQIDHVIQ------------------------------------------------------------------- 368 (440)
Q Consensus 356 ~~~~~~~~~~~i~------------------------------------------------------------------- 368 (440)
+..... ...+..
T Consensus 722 l~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 722 LSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 865432 222221
Q ss_pred -----------cC-----cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 369 -----------EG-----ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 369 -----------~~-----~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
.+ ..+++..++|..+++++|...+.|++|.++++|.++|+++..|.+
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 00 134677789999999999888899999999999999999998765
No 7
>KOG4224|consensus
Probab=99.95 E-value=3.3e-27 Score=210.60 Aligned_cols=323 Identities=20% Similarity=0.241 Sum_probs=285.4
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
-.++..|+..+.++..++|..++.++.+++..+. ....+...|++.++..+-++.+..+|..+..+|.|++ ++.+++
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~--nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnR 201 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS--NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENR 201 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc--chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhh
Confidence 3678889988899999999999999999988754 5678889999999999669999999999999999998 458889
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+.++..|++|.|+.++++.+..+++.|+.+|+||+-+ ...|+.+.+.+ .++.|++++.+++ +.++..+..+|.+|+
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLA 279 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999988 56778888877 9999999999888 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRT 309 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~~ 309 (440)
... .........+.+|.++++++++..........++.+++-++-.. ..++++|.+.+||.+|...+ .+++.+|..+
T Consensus 280 sdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 280 SDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred ccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence 886 33344456899999999999988888888999999998765543 56788999999999998765 5699999999
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHH
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLE 389 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~ 389 (440)
|.|++.++......+.++|+++.+..++.++.-.++.+...+++.++-.... ...+-+.|.++.|.
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~--------------k~~lld~gi~~iLI 423 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND--------------KEALLDSGIIPILI 423 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--------------HHHHhhcCCcceee
Confidence 9999999999999999999999999999998889999998888888865432 56778899999999
Q ss_pred HHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 390 ALQHHENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 390 ~L~~~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
.+..+.+.+|+..|..+|-+|.++.++
T Consensus 424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 424 PWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred cccCccchhhcccHHHHHHhhhhhhHH
Confidence 999999999999999999999876554
No 8
>KOG4224|consensus
Probab=99.95 E-value=5.6e-26 Score=202.80 Aligned_cols=288 Identities=19% Similarity=0.267 Sum_probs=250.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
...+..+.++-++.|..+|..++.++.++.... .+++.++.+|++|.|+.++++.++.+|+.++.+++||+.+ ...+
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~--EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~R 242 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSR--ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRAR 242 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhh--hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHH
Confidence 467888899888999999999999999985433 4678999999999999999999999999999999999976 6678
Q ss_pred HHHHhcC--CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINAN--AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+.+.+.+ .+|.|+.++.+++++++.+|..+|+|++.+. .+...+.+.|.+|.++++++++. ....-....|+.|++
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnis 320 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNIS 320 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcc
Confidence 8888888 9999999999999999999999999999995 45577888999999999998777 566677778999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d-~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
-++ -........|++.+|+.+|...| ++++..|..+|.+|+..+......+.++|++|.+..++.+...+++.....|
T Consensus 321 ihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 321 IHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred ccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 886 44455567899999999998755 5699999999999998888888999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~ 368 (440)
++.++..+ ..+..+.+.|+++.|+.++.+.+.+++..|+-+|.|++..- ++-..+++
T Consensus 400 ~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v-~~YarviE 456 (550)
T KOG4224|consen 400 IAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV-EHYARVIE 456 (550)
T ss_pred HHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh-HHHHHHHH
Confidence 99988755 46778999999999999999999999999999999998753 33344444
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=3.2e-20 Score=186.79 Aligned_cols=321 Identities=19% Similarity=0.264 Sum_probs=257.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
...++.|++.|.+++.++...++..|.++.-.. .+...+.+.|+++.|+.++.+++.+++..++++|.|++.+ ++.+
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHH
Confidence 467899999999999999999999999885433 4578999999999999999999999999999999999966 7789
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH-----
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS----- 227 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~----- 227 (440)
..++..|++|.|+.+|.+++ .+..++.+|.+++.+ +..|..+...+++|.+++++....+..+...+++++.
T Consensus 366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 99999999999999998764 556799999999987 5688888888999999998876544444444444444
Q ss_pred ---------------------------------hhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q psy9169 228 ---------------------------------NLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISD 273 (440)
Q Consensus 228 ---------------------------------~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~ 273 (440)
|++.++.+ ......+.+..|+.++.. ++++....++++|+||+.
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~--~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGP--LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 44444311 111123345555555544 467899999999999997
Q ss_pred CChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHH
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAA 349 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~ 349 (440)
.+.+..+.+-+.+++|.|..+|..+ .+++..+++.++|.++. ++.....+.+.|+++.|+.+|... +.++.-..+
T Consensus 521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil 599 (708)
T PF05804_consen 521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL 599 (708)
T ss_pred CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence 7666656666789999999999654 45799999999998875 566788888999999999999865 568999999
Q ss_pred HHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 350 ~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
+++.++..+... ...++.+.+....+.+|.++.|++|++.|..+|+-..+.++
T Consensus 600 ~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 600 YVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 999999987543 24566788899999999999999999999888876665544
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=9.6e-18 Score=169.01 Aligned_cols=310 Identities=17% Similarity=0.231 Sum_probs=239.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA 158 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~ 158 (440)
+-.++.. ...+...+...|.|++... .....+.+.|+++.|+++|.+++.++...++++|.+|+.. .+++..+.+.
T Consensus 255 ~~~l~~k-QeqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~ 330 (708)
T PF05804_consen 255 LQTLIRK-QEQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAES 330 (708)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHc
Confidence 3334443 3445557788888886433 3456788999999999999888999999999999999976 6789999999
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (440)
|+++.|++++.+++..++..++++|.|++.+ +..|..++..|++|.|+.+|.++. ....++.+|++++..+ ....
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd-~~r~ 405 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDD-EARS 405 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCH-hhHH
Confidence 9999999999999999999999999999988 778999999999999999998644 4566889999999876 4455
Q ss_pred HHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH-------------------------
Q psy9169 239 FEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV------------------------- 292 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv------------------------- 292 (440)
.....+++|.+++++- .+++.+...+++.+.|++..... .+.+.+.|+++.|+
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL 484 (708)
T ss_pred HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence 6666789999998764 45666777777777777765443 35555544444443
Q ss_pred ------------HhccC-CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhc
Q psy9169 293 ------------ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITA 357 (440)
Q Consensus 293 ------------~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~ 357 (440)
.++.. .+.+...+++.+|+|+...+....+.+.+.+++|.|.++|..+ .+++.-+++..++.++.
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 33333 2456888899999999987777777777889999999999865 45799999999999886
Q ss_pred CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCC
Q psy9169 358 GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFN 412 (440)
Q Consensus 358 ~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~ 412 (440)
.. ..+.++.+.|.++.+..|+... ++|+.-+...+...+.-
T Consensus 565 d~--------------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 565 DP--------------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred CH--------------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc
Confidence 43 3367788889999999887755 45555555555444443
No 11
>KOG4199|consensus
Probab=99.77 E-value=5.8e-16 Score=137.79 Aligned_cols=310 Identities=13% Similarity=0.140 Sum_probs=249.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANA 160 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~ 160 (440)
-.+++.....+++.+|..+.... ..+.+..++..++.+| +.++.++....+.++..-|..++.+++.+++.++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 44677788888888887664322 3567788899999999 6677888888889999999899999999999999
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 161 IPKFLQLLSS-PHLNLAEQATWALGNIAGDGA---------RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
++.+...|.. +...+...++|++.-+..+.. .....+...|++..|+..+.-..++.++..++.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 9999977765 446688889999999885532 234667788899999999997777889999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCC-CH---HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc--cCCChhHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTT-DV---ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTILT 304 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~-d~---~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL--~~~~~~v~~ 304 (440)
-.. .........|.+..++.++.+. +. .....+|..|..|+..++ ....+++.|+.+.++.++ .+++|.|..
T Consensus 271 Vr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 271 VRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred HHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence 775 3334455688999999999763 33 356778888888886555 458899999999999997 345789999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-C-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-S-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~ 382 (440)
.++.+++-|+...+++...+++.|+-...++.|+. + ...+++.|||++.||+..+.++...+++
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-------------- 414 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-------------- 414 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--------------
Confidence 99999999999999999999999999999998874 4 3579999999999999988776444443
Q ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 383 GGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
.|+++|.......++.....|..+|+.+-.+
T Consensus 415 ~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 415 NGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 4677788777788888888888888877543
No 12
>KOG1048|consensus
Probab=99.75 E-value=1.5e-16 Score=156.85 Aligned_cols=325 Identities=21% Similarity=0.264 Sum_probs=244.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcH--
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE-- 150 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~-- 150 (440)
...+|..+.+|.+.++.+|..|+..+..+ +...+.....+.+.|+|+.|+.+|.+.+.++|.+|+|+|.||..++..
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 35689999999999999999999999865 555545566777889999999999999999999999999999988766
Q ss_pred HHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC--------C-----cH
Q psy9169 151 QTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN--------T-----PT 216 (440)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~--------~-----~~ 216 (440)
++-.+.+.++|+.++.+|+. .+.++++.+..+|+||+.. ..++..++ ...+..|..-+-.. . ..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccc
Confidence 77889999999999999997 7799999999999999987 44444443 34455554443311 1 25
Q ss_pred HHHHHHHHHHHhhhhCCCCCC-CHHHHhhHHHHHHHhhc-----------------------------------------
Q psy9169 217 TFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLIH----------------------------------------- 254 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~----------------------------------------- 254 (440)
.+..+++.||.|++....... .+....+++..|+..++
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 677888888888876332211 11112233333322221
Q ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHhcc
Q psy9169 255 -------------------------------------------------------------TTDVETLSDICWALSYISD 273 (440)
Q Consensus 255 -------------------------------------------------------------~~d~~i~~~a~~~L~~l~~ 273 (440)
+.+..+...++.+|-|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 1223455667777777775
Q ss_pred CCh----hhHHHH-HhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC------h
Q psy9169 274 GHN----DKIQAV-VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR------V 342 (440)
Q Consensus 274 ~~~----~~~~~l-~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~------~ 342 (440)
+.. .....+ .+..+++.|+++|..++..|...++.+|+|++.+-. .+.++..++++.|++.|.... .
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 443 112233 566789999999999999999999999999987543 344666789999999997642 4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCc
Q psy9169 343 NIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 343 ~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~ 415 (440)
++...+|.+|.|+...+... +.-+.+.+|+++|..+..+. ++.+.+.|..++..+|...+
T Consensus 627 dtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999766543 66777889999999987765 67999999999999998765
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.71 E-value=1.7e-14 Score=143.80 Aligned_cols=324 Identities=17% Similarity=0.208 Sum_probs=249.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI 156 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~ 156 (440)
+.++..|++.+.+....++.+|.+++.... + ..+ ..+..+.|...|.++++.++..+++.|.+++.++......+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALS-P--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccC-H--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 347888898888888899999999986443 2 222 567788999999999999999999999999988888788899
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++..++ ..++..+..++.+++......
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999885544 66778888999999998755 678888999999999887555
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--h---hHHH-HHHHHH
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--T---TILT-AALRTV 310 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~---~v~~-~al~~L 310 (440)
.......|+++.++..+.++|.-++.+++.++..|+. .+...+.+.+.|+++.|+.++.+.. + .+.. ..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 5555667899999999999999999999999999999 5555689999999999999996542 2 2333 344788
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
|+++...+....... ..++..+.+++.+.++..+..|.-+++.|+... +..+.+.. .....+.. .+..+-.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~-~~~~~~~~------~l~~~~~ 344 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQ-KQGPAMKH------VLKAIGD 344 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHh-hcchHHHH------HHHHHHH
Confidence 899886544332221 235666777888889999999999999998543 33222211 11112222 2344455
Q ss_pred HhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 391 LQHHENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 391 L~~~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
...++..+++.++...+..+|...++
T Consensus 345 ~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 345 AIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 56677788888888888888654443
No 14
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=1.8e-14 Score=132.28 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=198.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+..|.+.+..++..|++.|..+- . ..+++.+..++.++++.+|..++|+|+.+......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--G----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--c----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 46788999999999999999999998651 1 13577788888999999999999999999643211
Q ss_pred HHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
...+++.|..+ +.++++.|+..|+.+||+++...... ....++.+...+.+.+ ..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC-
Confidence 12457788877 67788999999999999997543211 1123455656666664 8899999999976542
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
...++.|+.++.++++.++..|+.+|+.+...++ .+++.|+.+|.+.+..|+..|+++||.
T Consensus 158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 2378999999999999999999999999954333 247889999999999999999999998
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~ 392 (440)
+- ++ .+++.|++.+.+++ ++..|+.+|+++.. +. .++.|..++
T Consensus 219 ~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~~----------------------a~p~L~~l~ 261 (280)
T PRK09687 219 RK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD--KT----------------------LLPVLDTLL 261 (280)
T ss_pred cC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC--Hh----------------------HHHHHHHHH
Confidence 52 22 46889999998765 67789999999853 22 366777777
Q ss_pred c-CCcHHHHHHHHHHHHh
Q psy9169 393 H-HENETVYQKCYKIISM 409 (440)
Q Consensus 393 ~-~~~~~v~~~a~~il~~ 409 (440)
. +++..|..+|.+.|.+
T Consensus 262 ~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 262 YKFDDNEIITKAIDKLKR 279 (280)
T ss_pred hhCCChhHHHHHHHHHhc
Confidence 5 8899999999988864
No 15
>KOG4199|consensus
Probab=99.68 E-value=3.2e-14 Score=126.78 Aligned_cols=280 Identities=10% Similarity=0.138 Sum_probs=226.5
Q ss_pred CCHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCc-
Q psy9169 74 MTVPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTS- 149 (440)
Q Consensus 74 ~~i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~- 149 (440)
.++..++.+|. +++.++-...+.++++-...+. .+++.+.+.++++.+...| ......+..++.|++.-+..++.
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE-~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE-VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH-HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 45667777775 5667888888888887654443 6789999999999999877 55555788899999999876542
Q ss_pred --------HHHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcH---H
Q psy9169 150 --------EQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT---T 217 (440)
Q Consensus 150 --------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~---~ 217 (440)
.+.+.+...|++..|+..++.. ++.+...++.+|+.|+-. .++...+.+.|++..|++++.++... +
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~ 302 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRT 302 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence 4667888889999999999863 478888999999999977 44558888999999999999875533 4
Q ss_pred HHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 218 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
+.+.++.+|+.|+.++ .........++.+.++.++ +.+||.+...++.+++.|+-..++....+++.|+-...++.|
T Consensus 303 l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 303 LAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAM 381 (461)
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHH
Confidence 6688899999999776 5556666788899988877 457899999999999999999999999999999999999999
Q ss_pred cCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 296 DSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 296 ~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
+.. ...++..||+.|.|++..+.++...++..| ++.|+......+++....|--+|..+..
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 654 247999999999999999988888888765 5666666666677777777777777753
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.67 E-value=8.3e-15 Score=131.48 Aligned_cols=240 Identities=22% Similarity=0.257 Sum_probs=187.7
Q ss_pred HHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 155 VINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
+.+.+-++.|+.+|+. .++.+++.++.+++|.+.. +..++.+.+.|+++.+..++.+++ +.++..++++|.|++.+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCCh
Confidence 3566788999999996 5699999999999998877 788899999999999999999887 899999999999999876
Q ss_pred CCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
+.. ......++.+.+.+.+ -|..++..++.+|.+|+..++. +.++ .+.++.++.+|.+++..++..++++|.
T Consensus 86 en~---~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 86 ENQ---EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhH---HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 332 2334566666665433 4778999999999999866553 3333 346999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHh-hcCcchHHHHHHHHcC-cHHHH
Q psy9169 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVI-QEGELNQMALLVEESG-GLEKL 388 (440)
Q Consensus 312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i-~~~~~~~~~~~l~~~g-~l~~l 388 (440)
||+... ..+..++.++++..++.+++.. ..++...+.+.+.||..+-........ +-...+.+..++.+.+ ..++|
T Consensus 160 nLS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 160 NLSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred HhccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence 998755 4677799999999999999986 567899999999999865221111111 1111233445566655 67889
Q ss_pred HHHhcCCcHHHHHHH
Q psy9169 389 EALQHHENETVYQKC 403 (440)
Q Consensus 389 ~~L~~~~~~~v~~~a 403 (440)
..|..|++++|+.++
T Consensus 239 ~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 239 QALANHPDPEVKEQV 253 (254)
T ss_pred HHHHcCCCHHHhhhc
Confidence 999999999999875
No 17
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.65 E-value=2.9e-17 Score=124.55 Aligned_cols=93 Identities=38% Similarity=0.605 Sum_probs=62.0
Q ss_pred cchhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccch-h-hhccccCCCCCCcccCCHHHHH
Q psy9169 3 QKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE-E-ENVTVIEPTCMSPIKMTVPEMI 80 (440)
Q Consensus 3 ~~~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~lv 80 (440)
.+++++.|++.||++|+|++|+||||++..|+|||+||+|.|.|||++....... + ..... ...........++.++
T Consensus 2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~v 80 (97)
T PF01749_consen 2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESD-QNSSAQQLNEELPEMV 80 (97)
T ss_dssp -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT------------------TCCCCS--HHHHHHH
T ss_pred CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccc-ccccccccccccHHHH
Confidence 3678999999999999999999999999999999999999999999997522211 1 11100 0000112345678899
Q ss_pred HHhcCCCHHHHHHHHH
Q psy9169 81 EGMKSSNPKMRMIATR 96 (440)
Q Consensus 81 ~~L~s~~~~~~~~a~~ 96 (440)
..+.|+|+..|+.|+.
T Consensus 81 ~~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 81 AGVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHHTSSCHHHHHHHHH
T ss_pred HhcCCCCHHHHHHhhC
Confidence 9999999999999875
No 18
>KOG2122|consensus
Probab=99.65 E-value=2.3e-14 Score=147.53 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=250.5
Q ss_pred cCCHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHH-------HHHHhccCC-------ChHH
Q psy9169 73 KMTVPEMIEGMKSSN---PKMRMIATRSARKMLSKERHPP--IDELIEAGVVP-------ICVELLDDE-------NPNT 133 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~---~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~-------~Lv~lL~~~-------~~~i 133 (440)
...++.|++.|+.+| .+.+..|-.+|.+++...++.. ..++---.++. .+-.+|... ..+-
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H 313 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH 313 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence 468899999998544 5778888889999987655332 11111111122 111222111 1234
Q ss_pred HH-HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC------------CHHHHHHHHHHHHHhhCCCchhHHHHH-h
Q psy9169 134 QF-EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP------------HLNLAEQATWALGNIAGDGARARDLLL-G 199 (440)
Q Consensus 134 ~~-~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~------------~~~v~~~a~~~L~nl~~~~~~~r~~i~-~ 199 (440)
+. .|+.+|..++.+ ++++..+-+.|++..+..||.-. +..+|..+..+|-||.......+..+. .
T Consensus 314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 55 677778888755 89999999999999999988521 157899999999999966555655555 6
Q ss_pred cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
.|++..++..|.+.. .++....+.+|.||+...+..... ....+-+..|+.+ ++...+..+..++.+|+||+.+..+
T Consensus 393 rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 799999999998776 789999999999999765433222 2224555555544 4556678899999999999988887
Q ss_pred hHHHHHhc-CChHHHHHhccCC----ChhHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q psy9169 278 KIQAVVDT-GVVPRLVELLDSE----ETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349 (440)
Q Consensus 278 ~~~~l~~~-g~~~~Lv~lL~~~----~~~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~ 349 (440)
....+... |++..||.+|... ...+...|-.+|.|+.. ..+.+.+.+.+++++..|+..|++..-.+..++|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 77766664 9999999999764 34678888888888754 5677899999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 350 ~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
.+|+||.+.+++. .++|++.|.+..|.+|++++|..|.+-+...|.+++...+
T Consensus 552 GTLWNLSAR~p~D-------------Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 552 GTLWNLSARSPED-------------QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred hhhhhhhcCCHHH-------------HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999987654 6889999999999999999999999999999999987664
No 19
>KOG2122|consensus
Probab=99.65 E-value=1.1e-14 Score=149.89 Aligned_cols=265 Identities=18% Similarity=0.177 Sum_probs=218.3
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------------CChHHHHHHHHHHHHHhCCCcHHHHHH-HhcC
Q psy9169 93 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------------ENPNTQFEATWALTNIASGTSEQTMTV-INAN 159 (440)
Q Consensus 93 ~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------------~~~~i~~~a~~~L~nla~~~~~~~~~i-~~~g 159 (440)
.|+..|.++ +.+. ..+..+.+-|++..+-++|.- .+..+|.++..+|+||+.++..++..+ -..|
T Consensus 317 aA~~~lMK~-SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 556666655 5554 557788888888888887721 123589999999999999988777755 4569
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAP 237 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~ 237 (440)
++..+|..|.+...++....+.+|.||+-. ....+..+.+.|-+..|+...-....+..++.++.+|+||+-+.. ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 999999999999889999999999999933 245666677889999998886655557788999999999997653 334
Q ss_pred CHHHHhhHHHHHHHhhcCC----CHHHHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 238 DFEKIKICLPLLNQLIHTT----DVETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll~~~----d~~i~~~a~~~L~~l~---~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
.+..+-+++..|+.+|... .-.|+..+-++|.|.+ .....+.+.+.++.++..|++.|++.+..+..++|.+|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 5667789999999999643 3467888888887765 34455668999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 359 (440)
+||...+++..+++++.|+++.|.+++.+.+..+..-++-+|.|+....
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999864
No 20
>KOG0168|consensus
Probab=99.64 E-value=9e-14 Score=137.09 Aligned_cols=261 Identities=20% Similarity=0.341 Sum_probs=223.6
Q ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
..+..|++.|+.. |+..|++|+..++.+++-.......-+--.-++|.|+.+| ...+.+++..|+++|++++.--|..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3577888888865 9999999999999999876544444333346899999999 6778999999999999999988999
Q ss_pred HHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 152 TMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
...+++.++||.|+.-|.. +-.++.|+++.+|-.|+...+ ..+++.|++-..+..+.--. ..+++.|+.+..|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999988876 448999999999999997654 45888999999999887655 789999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhccCCC----hhHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEE----TTIL 303 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~----~~v~ 303 (440)
..- +...+..+.+.+|.|..+|...|...+..+|-++.++++ +.++..+.+...|++....++|.-.. ..+.
T Consensus 323 ksi-~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 323 KSI-RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred hcC-CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 887 666777889999999999999999999999999999985 45677788899999999999986542 3567
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC
Q psy9169 304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339 (440)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~ 339 (440)
...++.+.-++.+.+.....+...++...|..+|..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 778899999999999888889999999999999865
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.62 E-value=1.6e-12 Score=129.85 Aligned_cols=322 Identities=18% Similarity=0.185 Sum_probs=245.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
...++.++..+.++|..+...|+..|.++++.. +..+.++..+.++.|..++...++.+|..+..++.+++..+++..
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 356888999999999999999999999997643 345678888889999999977788999999999999999999999
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH-----HHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT-----FLRNIVWAIS 227 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~-----~~~~a~~~L~ 227 (440)
..+.+.|+++.++..|.+++.-++..++.+|..++. .+.....+.+.|+++.|..++....... +.-..+....
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999889999999999999999 5777789999999999999998543222 3344446667
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHH-Hhc-CC----hHHHHHhccCCChh
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV-VDT-GV----VPRLVELLDSEETT 301 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l-~~~-g~----~~~Lv~lL~~~~~~ 301 (440)
+++... +..-......++..+..++.+.|+..+..|+.+++.++...... ..+ .+. +. +..+-....+...+
T Consensus 275 ~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 275 NLARVS-PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 777753 33223334567777788888999999999999999999766554 444 333 33 44444445566778
Q ss_pred HHHHHHHHHHHhhcCChH-H-------HHHHH---HcCCHH-HHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169 302 ILTAALRTVGNIATGNDH-Q-------TDCVI---QAGGLQ-KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 369 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~-~-------~~~l~---~~g~l~-~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~ 369 (440)
++..++.+++++...... . .+... ..+-.. .++.+++.+=+++|..+...|..++.....+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~------- 425 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ------- 425 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH-------
Confidence 999999999999643322 1 11111 123344 7788888877899999999999999876543
Q ss_pred CcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 370 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 370 ~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
..+....|.++.+.+=....+.+..+.=..++..+..
T Consensus 426 ------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 426 ------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3445566667777666666677777777777777663
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=1.9e-13 Score=122.78 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=176.8
Q ss_pred HHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169 113 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 191 (440)
Q Consensus 113 ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (440)
+.+.+-++.|+.+| .+.+|.++..++.++++.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 35667789999999 678999999999999998765 7888999999999999999999999999999999999998744
Q ss_pred hhHHHHHhcCChHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169 192 RARDLLLGLGTMPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 270 (440)
Q Consensus 192 ~~r~~i~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~ 270 (440)
. +..+- ..++.+++.+.+ +.+..++..++.+|.||+...+ . .......+|.++.+|..++..++..++++|.+
T Consensus 87 n-~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 N-QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-Y--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred h-HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-h--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 34443 246666665443 3457889999999999986652 2 22345689999999999999999999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChH--------------HHHHHHHcC-CHHHHH
Q psy9169 271 ISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH--------------QTDCVIQAG-GLQKMK 334 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~--------------~~~~l~~~g-~l~~L~ 334 (440)
|+..+.. ...++.++++..++.++... +.++...++..+.||..+-.. ..-.+-+.+ +.+.|.
T Consensus 161 LS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 161 LSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred hccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 9987664 47788889999999999775 568899999999999643111 111111222 556666
Q ss_pred HHhcCCChhHHHH
Q psy9169 335 KLLSSSRVNIVKE 347 (440)
Q Consensus 335 ~ll~~~~~~i~~~ 347 (440)
.+..+++++||..
T Consensus 240 ~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 240 ALANHPDPEVKEQ 252 (254)
T ss_pred HHHcCCCHHHhhh
Confidence 7777777777654
No 23
>KOG1048|consensus
Probab=99.57 E-value=1.5e-13 Score=135.84 Aligned_cols=291 Identities=17% Similarity=0.214 Sum_probs=228.2
Q ss_pred CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hHH
Q psy9169 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR--ARD 195 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r~ 195 (440)
-+|..+.+|.+.++.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+++.+|+.+|+|+|.||...... .+-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 478888999999999999999999999999999999999999999999999999999999999999999965544 667
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--------------CCHHHH
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--------------TDVETL 261 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--------------~d~~i~ 261 (440)
.+.+.++++.++++++...+.++.+.++.+|+||++.+ .....+....++.|...+-. .+..+.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 78899999999999998666899999999999999884 34555666677776654411 135788
Q ss_pred HHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccC------CChhHHHHHHHHHHHhhcCCh----------------
Q psy9169 262 SDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGND---------------- 318 (440)
Q Consensus 262 ~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~---------------- 318 (440)
..+..+|.|++....+..+.+.+. |+|..|+..+++ .+..-.++++-++.|+...-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999999777777777665 899999988863 345667788888888854211
Q ss_pred ---------------HHHHH----------------------HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCCh
Q psy9169 319 ---------------HQTDC----------------------VIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 319 ---------------~~~~~----------------------l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~ 360 (440)
..... ++...++..-..++. +.++.+.+.++.+|-|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00000 111223444344444 4467889999999999999865
Q ss_pred HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcccc
Q psy9169 361 RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 418 (440)
Q Consensus 361 ~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~ 418 (440)
.....+ .+..+....|++.|.+|++.+++.|...+..+|.++--+-...+
T Consensus 552 ~~~~~~--------~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ 601 (717)
T KOG1048|consen 552 TWSEYM--------RGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKE 601 (717)
T ss_pred cchhHH--------HhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhh
Confidence 443332 13455888999999999999999999999999999977655443
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.56 E-value=9.5e-14 Score=111.61 Aligned_cols=119 Identities=32% Similarity=0.570 Sum_probs=110.9
Q ss_pred HHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 191 (440)
Q Consensus 112 ~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (440)
.+++.|+++.|++++.+.++.++..++++|++++..+++....+++.|+++.++.+|.++++.++..++|+|+|++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46788999999999988889999999999999999988999999999999999999999999999999999999999887
Q ss_pred hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 192 ~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
..+..+...|+++.|+.++...+ ..+++.++|+|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 88888889999999999998776 8999999999999873
No 25
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=6.2e-13 Score=122.13 Aligned_cols=207 Identities=14% Similarity=0.105 Sum_probs=163.9
Q ss_pred CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
-++.|..+|.+++..++..++++|..+.. ..+++.+..++.++++.+|..++|+|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 47788999999999999999999998863 25678888999999999999999999998643211
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
....++.|..++.++.+..++..++.+|++++.... .. ...+++.+...+.+.++.++..++++|+.+.. +
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 113567788776666668999999999999975542 11 23456667788888999999999999987753 1
Q ss_pred hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
..++.|+.+|.++++.|+..|+.+||.+..+++ .+++.|+.++.+.++.++..|+|+|+.+
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~-- 219 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR-- 219 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc--
Confidence 248999999999999999999999999944343 3567799999999999999999999997
Q ss_pred CChHHHHHHhh
Q psy9169 358 GNSRQIDHVIQ 368 (440)
Q Consensus 358 ~~~~~~~~~i~ 368 (440)
+++..+..+++
T Consensus 220 ~~~~av~~Li~ 230 (280)
T PRK09687 220 KDKRVLSVLIK 230 (280)
T ss_pred CChhHHHHHHH
Confidence 34555555444
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=5.7e-13 Score=107.03 Aligned_cols=117 Identities=39% Similarity=0.589 Sum_probs=109.6
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (440)
...++++.+++++.+.++.++..++++|++++...++....+++.|+++.++++|.++++.++..|+++|+|++.+.+..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 34678999999999999999999999999999998888889999999999999999999999999999999999988888
Q ss_pred HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 321 ~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
...+.+.|+++.|..++...+..+++.++|+|.|+++
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8889999999999999999999999999999999974
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.47 E-value=5.1e-11 Score=113.89 Aligned_cols=320 Identities=14% Similarity=0.112 Sum_probs=226.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh-----CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 76 VPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEA-----GVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 76 i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-----g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
+..++.++. ....++....+..+..++...+ .....+.+. ....+++.+|..++.-++..|+.+|+.+.+..+
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 556777776 4557777778888888886543 234455543 577888888888889999999999999987644
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHH
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAIS 227 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~ 227 (440)
.........-.++.|...+++++ ...+..|+.+|..+... +.+|..+.+.++++.|+.+|+... +..++-.++.|++
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 32221111123445666666543 67788889999999887 678888888889999999998654 5788999999999
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhccC--C
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDS--E 298 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~------~~~~~~l~~~g~~~~Lv~lL~~--~ 298 (440)
-|+..++ ........+++|.++.+++. ..+.+..-++.++.|+...+ ......+++.|+.+.+-.+... .
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 9887763 23333346899999999976 46789999999999999753 2344567777865544444332 2
Q ss_pred ChhHHHHHHHHHHHh--------hc----------C----Ch---------HHHHHHHHcC--CHHHHHHHhc-CCChhH
Q psy9169 299 ETTILTAALRTVGNI--------AT----------G----ND---------HQTDCVIQAG--GLQKMKKLLS-SSRVNI 344 (440)
Q Consensus 299 ~~~v~~~al~~L~nl--------~~----------~----~~---------~~~~~l~~~g--~l~~L~~ll~-~~~~~i 344 (440)
++++.. .+..|... ++ | +| ++...+.+.+ ++..|+++|. +.++.+
T Consensus 292 DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 292 DEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred cHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 444322 22222211 10 0 11 2233344433 6788999995 456788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
..-||.=|+.++...|.- +..+++.|+-+.+..|+.|+|++|+..|..++.+++.
T Consensus 371 laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888999999998765543 6778899999999999999999999999999998864
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=4e-11 Score=128.16 Aligned_cols=248 Identities=15% Similarity=0.131 Sum_probs=150.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+..|.++++.+|..|+..|..+- . .++++.|+..|.++++.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT---P---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc---c---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 46788999999999999999999998652 1 236888999999999999999999998885321
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh-----
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN----- 228 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~----- 228 (440)
...+.|...|.++++.++..++.+|+.+.... ...|+..|.+.+ ..++..++++|..
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d-~~VR~~Av~aL~~~~~~~ 745 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD-HRVRIEAVRALVSVDDVE 745 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC-HHHHHHHHHHHhcccCcH
Confidence 12345566666666777777776666653221 122333343333 4455555555544
Q ss_pred -----------------------hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 229 -----------------------LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 229 -----------------------l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
+.... ...++.|..++.+.|+.++..++.+|+.+.....
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~--------- 807 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPD--------- 807 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------
Confidence 33221 0113444455555555555555555554432110
Q ss_pred CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy9169 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365 (440)
Q Consensus 286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 365 (440)
+++.++..|.++++.|+..|+.+|+.+.. ...++.|..+|.++++.||+.|+++|+.+ .+++.
T Consensus 808 -~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~~---- 870 (897)
T PRK13800 808 -DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW-PGDPA---- 870 (897)
T ss_pred -hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCHH----
Confidence 12334455555555555555555554421 12346666666666666777777777665 22222
Q ss_pred HhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy9169 366 VIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409 (440)
Q Consensus 366 ~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~ 409 (440)
..+.|...+.+++.+|+..|...|+.
T Consensus 871 ------------------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ------------------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 24567788889999999999998864
No 29
>KOG4500|consensus
Probab=99.42 E-value=1.5e-11 Score=113.41 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=220.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHH----HHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDE----LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANA 160 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~----ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~ 160 (440)
..+..+...+..++......+ ..+.. -+.++.+..|.+...+++.++..++.++|+|+|.++.+.|..+.+.|+
T Consensus 53 ~~~~tv~~~qssC~A~~sk~e--v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNE--VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eccchhhhhhHHHHHHHhhhH--HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 344556666666776654211 12222 345677777777777888999999999999999999999999999999
Q ss_pred HHHHHHhhCC----C---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhC
Q psy9169 161 IPKFLQLLSS----P---HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 161 i~~L~~lL~~----~---~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~ 232 (440)
-..++.+|+. . +.+....+.+.|.|..-++...|..+.+.|+++.|..++. ...+....+.+.-...|+.+-
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~ 210 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF 210 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence 8888888864 1 2577778899999999999999999999999999998887 333444445444444443321
Q ss_pred CC-CCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CCh-------hH
Q psy9169 233 KN-PAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EET-------TI 302 (440)
Q Consensus 233 ~~-~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~-------~v 302 (440)
.. ...++.....+.-.+++++.. ..+.+..-++..+.+.+.++.-. -.+.+.|.++.++.++.. ++. ..
T Consensus 211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l 289 (604)
T KOG4500|consen 211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL 289 (604)
T ss_pred HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence 10 011222233444555555543 45667777888888888776644 556788999999999865 211 23
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcC-CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHH
Q psy9169 303 LTAALRTVGNIATGNDHQTDCVIQAG-GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE 381 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~l~~~g-~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~ 381 (440)
...++..+.-+.+|++. .+.+...+ +++.+...+.+.+.+..-.+..+++|++..... |..+-+
T Consensus 290 ~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~--------------ci~~v~ 354 (604)
T KOG4500|consen 290 FKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDI--------------CIQLVQ 354 (604)
T ss_pred HHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchH--------------HHHHHH
Confidence 34455555556667664 44555555 899999999999999999999999999986644 455556
Q ss_pred cCcHHHHHHHhc-----CCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 382 SGGLEKLEALQH-----HENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 382 ~g~l~~l~~L~~-----~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
.|.+.+|.+++. .+|-+++..+..+++++.-.-.+
T Consensus 355 ~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 355 KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 677777776544 35778999999999999764443
No 30
>KOG4500|consensus
Probab=99.42 E-value=7.6e-11 Score=108.79 Aligned_cols=339 Identities=14% Similarity=0.124 Sum_probs=229.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc----CC---ChHHHHHHHHHHHHHhCC
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD----DE---NPNTQFEATWALTNIASG 147 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~----~~---~~~i~~~a~~~L~nla~~ 147 (440)
.++.|.+...|+|.++-.+..+++.|+... ++..+..+.+.|+-..++..|+ .+ +.+....+...|.|...+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd-n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYD-NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhcc-CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 466777778899999999999999999654 4478899999999777777772 12 236777788999999999
Q ss_pred CcHHHHHHHhcCCHHHHHHhhCC--CCHHH--------------------------------------------HHHHHH
Q psy9169 148 TSEQTMTVINANAIPKFLQLLSS--PHLNL--------------------------------------------AEQATW 181 (440)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~--~~~~v--------------------------------------------~~~a~~ 181 (440)
+.+.+..+++.|+++.|...+-- ++.+. .+.+..
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 99999999999999988766632 22222 222333
Q ss_pred HHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-------CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc
Q psy9169 182 ALGNIAGDGARARDLLLGLGTMPQILALVQPN-------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254 (440)
Q Consensus 182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~ 254 (440)
.|...+.+ ...+-.+.+.|.+..+++++++- +.......++....-|..+++.-........++..+...+.
T Consensus 247 ila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 247 ILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 33333222 22223344566666666666531 11233444555555555554221111222348889999999
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-----CChhHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy9169 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQAGG 329 (440)
Q Consensus 255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~ 329 (440)
++|...+..+.-+|+|+++.++.++ .+++.|.+..|+.+|.. ++.+++.+++.+|.|++..-+ ....++.+|+
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGv 403 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGV 403 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccch
Confidence 9999999999999999999988775 56789999999999854 355788899999999987655 4566899999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhcC----------ChHHHHHHhh----------cCcch-------------HHH
Q psy9169 330 LQKMKKLLSSSRVNIVKEAAWTISNITAG----------NSRQIDHVIQ----------EGELN-------------QMA 376 (440)
Q Consensus 330 l~~L~~ll~~~~~~i~~~a~~~L~nl~~~----------~~~~~~~~i~----------~~~~~-------------~~~ 376 (440)
.+.+...+....|.+.-.-..+++.+..+ +++-+..+++ .|+.+ ...
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~ 483 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVI 483 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhH
Confidence 99999999988888887777777776543 3344445554 12211 122
Q ss_pred HHHHHcCcHHHHHHHhcCCcHHHHHHHH---HHHHhhCCCCccc
Q psy9169 377 LLVEESGGLEKLEALQHHENETVYQKCY---KIISMAFNDSAEN 417 (440)
Q Consensus 377 ~~l~~~g~l~~l~~L~~~~~~~v~~~a~---~il~~~~~~~~~~ 417 (440)
..+-..||++.........+-..+.-|. -+++..+.....+
T Consensus 484 ~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~k 527 (604)
T KOG4500|consen 484 LTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGK 527 (604)
T ss_pred hhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccch
Confidence 3344577888877776666555554443 3344444444443
No 31
>KOG1222|consensus
Probab=99.42 E-value=1.6e-10 Score=108.05 Aligned_cols=315 Identities=15% Similarity=0.157 Sum_probs=225.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..+..||+.|..++.++.......+.++.-.. .+...+.+.|++..|+.++...+|+++...+..|.|++.+ ...+.
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~ 380 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRP 380 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccH
Confidence 35678899999888888888888887774333 3567888999999999999999999999999999999976 56788
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.++..|.+|.|+.+|.+... ...|+..|..++.+ ...+.++.....|+.+...+-.+.+.++-...+...-|||-++
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999988752 23477788888877 4566777777888888887766554444444444444555433
Q ss_pred CCCC------------------------------------CHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCh
Q psy9169 234 NPAP------------------------------------DFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 234 ~~~~------------------------------------~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
.... .....-..+..|...+. .++++....+++++++|.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 1110 00000111222333333 3456778899999999997766
Q ss_pred hhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHH
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTI 352 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L 352 (440)
+-.+.+-+..++|-+-..|... ..+++...+-++|.++.. ......+..+|+++.|+.+|+.. +.++.-...++.
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 6666777779999999988654 346777777778876653 44666777889999999999864 456777777777
Q ss_pred HHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169 353 SNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408 (440)
Q Consensus 353 ~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 408 (440)
..+..+.. ....++.+...-..+.+|.+..|.+|++-+...|.
T Consensus 617 ~Q~l~He~-------------tr~~miket~~~AylIDLMHDkN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 617 LQFLKHEL-------------TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALD 659 (791)
T ss_pred HHHHHHHH-------------HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHH
Confidence 77765521 12445666667778889999999988776655443
No 32
>KOG1293|consensus
Probab=99.41 E-value=2.2e-10 Score=111.08 Aligned_cols=323 Identities=15% Similarity=0.195 Sum_probs=214.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
.++..+.+.+++....|..-..+.+.+.+ ++...+++.|.++.++.++ .+..++.+.+.+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 34555667788888889999998887765 4556899999999999999 55667788888888888998888888899
Q ss_pred HhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhC---------------------
Q psy9169 156 INANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQ--------------------- 211 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~--------------------- 211 (440)
.+.+.++.|+++|.+++ ..+++..+.++.++...++..- .......+++.+..++.
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~ 171 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK 171 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence 99999999999999998 8899999999999875543210 00001111111111111
Q ss_pred -------------------CCCcHHHHHHHHHHHH---hhhhCCCCCCCHHH----HhhH--------------------
Q psy9169 212 -------------------PNTPTTFLRNIVWAIS---NLCRNKNPAPDFEK----IKIC-------------------- 245 (440)
Q Consensus 212 -------------------~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~----~~~~-------------------- 245 (440)
...+...+..+..+++ ++..+++....... ..++
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 0001222333333333 22221100000000 0000
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q psy9169 246 ---------------------------------------------------------------------------LPLLN 250 (440)
Q Consensus 246 ---------------------------------------------------------------------------~~~L~ 250 (440)
.+.+.
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 01111
Q ss_pred Hhh----------------------------------------------------cCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 251 QLI----------------------------------------------------HTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 251 ~ll----------------------------------------------------~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
+++ ...|...+.++|-++-+++..-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0112222333333333333222211
Q ss_pred HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 279 ~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
...+-...+..+|++++..++..|...++.+|.|++.........++..|+++.+..++.+.++.++..+.|+|.++.-+
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 12223456899999999999999999999999999987777888899999999999999999999999999999999988
Q ss_pred ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 359 NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 359 ~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
+.+..+... +.+. +...|..+.+.+++.|++++.++++++..+
T Consensus 492 ~de~~k~~~-----------~~ki-~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 492 CDEEEKFQL-----------LAKI-PANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHH-----------HHHh-hHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 766433221 1111 356688899999999999999999999876
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.39 E-value=2.4e-10 Score=109.36 Aligned_cols=282 Identities=16% Similarity=0.187 Sum_probs=203.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.....++.+|+.+|..++..|+..+..+++.... ........-.+..|...|.+ .+...+.-++.+|..+... ++.|
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R 178 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYR 178 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHH
Confidence 3467788899999999999999999999875432 11111111134455566643 4577888889999998865 7788
Q ss_pred HHHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
..+.+.++++.|+.+|+.. ...++.+++.+++-++.+.+ ........+.|+.|+++++....+.+.|-++.+|.|+.
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 8898999999999999863 46889999999999997744 44556678999999999998888999999999999999
Q ss_pred hCCCCC---C--CHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHH-------hccC--------------Ch-----
Q psy9169 231 RNKNPA---P--DFEKIKICLPLLNQLIHT---TDVETLSDICWALSY-------ISDG--------------HN----- 276 (440)
Q Consensus 231 ~~~~~~---~--~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~-------l~~~--------------~~----- 276 (440)
...... . ....+...++.++..|.. .|+++..+.-..-.. ++.. ++
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence 754211 1 111223233444444432 576665444332221 1210 01
Q ss_pred ----hhHHHHHhc--CChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q psy9169 277 ----DKIQAVVDT--GVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349 (440)
Q Consensus 277 ----~~~~~l~~~--g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~ 349 (440)
+....+-+. .++..|+++|. +.++.+..-||.=||.++...|.....+-+.|+=..++.+|.+++++++++|.
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 222333333 46788999994 55778888999999999999998888888899999999999999999999999
Q ss_pred HHHHHHhcC
Q psy9169 350 WTISNITAG 358 (440)
Q Consensus 350 ~~L~nl~~~ 358 (440)
.|+.-+..+
T Consensus 418 ~avQklm~~ 426 (429)
T cd00256 418 LAVQKLMVH 426 (429)
T ss_pred HHHHHHHHh
Confidence 999987643
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.25 E-value=1.6e-08 Score=104.12 Aligned_cols=265 Identities=10% Similarity=0.073 Sum_probs=191.5
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
...++.+++.+.++|.+.+......+.+++...+ .. .+ -+++.|.+-+.+++|.+|-.|+++|++|-. ++..
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--el-al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--EK-AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--HH-HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH
Confidence 3567889999999999999998888887754332 11 11 157888888999999999999999999864 3333
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
+ -+++.+.+.+.+.++.||..|+.++.++...++. .+...+.++.|..++.+.+ +.++.+|+.+|..++..
T Consensus 139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDY 209 (746)
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHh
Confidence 2 2456788889999999999999999999876553 3445678899999887655 89999999999999876
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
. + ..+......+..+...+...++..+...+.+|......++... ..++..+...|+|.++.|...|++++.+
T Consensus 210 ~-~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 210 G-S-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred C-c-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4 2 2344456667777777777788888888888866443222221 2458888899999999999999999999
Q ss_pred hhcCC-hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHH
Q psy9169 313 IATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 363 (440)
Q Consensus 313 l~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~ 363 (440)
+.... +.....+.. .+-..++.++ ++++.++..+...|.-++...+...
T Consensus 283 l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf 332 (746)
T PTZ00429 283 LASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLL 332 (746)
T ss_pred hcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHH
Confidence 87543 222222221 1335555554 4567788777777766666555433
No 35
>KOG2171|consensus
Probab=99.25 E-value=1.1e-08 Score=105.68 Aligned_cols=316 Identities=16% Similarity=0.178 Sum_probs=222.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc----cCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL----DDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL----~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
+.+.+.+.+++..++..|++++...+...++.....-.-...+|.++..+ ..++.+.-..++.+|..++...+...
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 33445556666559999998888776544311111111134666666655 55666777888999999988777665
Q ss_pred HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHH--HhcCChHHHHhhhCCCCc-------------
Q psy9169 153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLL--LGLGTMPQILALVQPNTP------------- 215 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i--~~~g~i~~L~~ll~~~~~------------- 215 (440)
...+. .++..-+....+.+ ..+|..|+.+|..++...|...+.. +-...++.++.++....+
T Consensus 242 ~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 242 RPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence 54442 46666667776654 7899999999999997744433222 233456666766652110
Q ss_pred --HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169 216 --TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293 (440)
Q Consensus 216 --~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~ 293 (440)
..--+.+..+|-.++.+-++. .....+++.+-.++.+.+..-+.+++.+|+.++.+..+.+...+ ..+++.++.
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~ 396 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLN 396 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHh
Confidence 123456677777777765322 23456778888889999999999999999999999886655433 367888889
Q ss_pred hccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC-ChHHHHHHhhcCc
Q psy9169 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG-NSRQIDHVIQEGE 371 (440)
Q Consensus 294 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~-~~~~~~~~i~~~~ 371 (440)
.|.++++.||..||.++|.+++.-....+.-...-+++.|+..+.+. ++.++..|+-++-|.... ..+.+...++
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--- 473 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--- 473 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH---
Confidence 99999999999999999999987666666666667888999999876 579999999999999976 4444444443
Q ss_pred chHHHHHHHHcCcHH-HHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 372 LNQMALLVEESGGLE-KLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 372 ~~~~~~~l~~~g~l~-~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
.+ ++ ++..|..++.+.|++.+...|....
T Consensus 474 ------~l-----m~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 474 ------GL-----MEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred ------HH-----HHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 22 22 6677888889999999888887653
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.23 E-value=9.1e-10 Score=112.07 Aligned_cols=259 Identities=19% Similarity=0.231 Sum_probs=199.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
....+.+++++.+.|...+.-+-..+..+...++ +.++- ++..+.+-|.++++.++..|+.+|++++. ++..
T Consensus 41 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 41 SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh
Confidence 4678999999999999999988888877654332 21111 57788888889999999999999999983 4443
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
+. +++.+.+++.++++.||..|+.++..+....|.. +-.. .++.+..++.+.+ +.++..|+.++..+ ..
T Consensus 113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HC
T ss_pred hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-cc
Confidence 33 5788999999999999999999999998665543 2222 5888999996666 89999999999999 22
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
. +.........+++.|..++...++..+..++..+..++...+..... ..+++.+..++.+.++.|...|+.++..
T Consensus 182 ~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 182 N-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp T-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 2 11101345566677777778899999999999999998776655321 3468889999998889999999999998
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 360 (440)
+....+ .-..+++.|..++.++++.++..++.+|..++...+
T Consensus 258 l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 258 LSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 765443 222478889999999899999999999999987663
No 37
>KOG2023|consensus
Probab=99.22 E-value=4e-10 Score=109.16 Aligned_cols=275 Identities=19% Similarity=0.181 Sum_probs=186.2
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHh----cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN----ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
.++|.|.++|.+++...++-|..+|..|+.++++.-+.-.. .-.+|.++.+.+++++.+|..|+.++..+.-..+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 57999999999999999999999999999887654432111 13689999999999999999999999888755433
Q ss_pred hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
.- ...-...++.+..+- ++.++++++++|.++..|..-. +..-.....+++..+++..++.|+++...||.....++
T Consensus 208 al-~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 208 AL-YVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HH-HHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 21 111123445555544 5556999999999999998765 33333445677777777778888888888887777666
Q ss_pred cCChh---------------------------------------------------------------------------
Q psy9169 273 DGHND--------------------------------------------------------------------------- 277 (440)
Q Consensus 273 ~~~~~--------------------------------------------------------------------------- 277 (440)
..+.-
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 42100
Q ss_pred ----------------hHHHHHhcCC----hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc--CCHHHHHH
Q psy9169 278 ----------------KIQAVVDTGV----VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKK 335 (440)
Q Consensus 278 ----------------~~~~l~~~g~----~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~--g~l~~L~~ 335 (440)
....+....+ +|.|-+.|.+....+++.++.++|.|+.|.-. -++.. -++|.|+.
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLS 441 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHH
Confidence 0001111123 34444445666777888888888888876422 22221 26899999
Q ss_pred HhcCCChhHHHHHHHHHHHHhcCCh-HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 336 LLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 336 ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
+|.+..+-+|...||+|+..+.--. +..+. -+... ++.|..-+-..|..|++.|+.+..++=
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~--------~f~pv------L~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDE--------YFKPV------LEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCChHh--------hhHHH------HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998764200 00000 11111 233444455779999999999998883
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=5.9e-09 Score=111.71 Aligned_cols=229 Identities=14% Similarity=0.160 Sum_probs=155.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc----
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS---- 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~---- 149 (440)
..++.|+..|.++++.++..|+..|..+..... ..+.|...|.++++.+|..|+.+|..+..+..
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 457889999999999999999999887632111 12334444444555555555555544421110
Q ss_pred --------HHHH----HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH
Q psy9169 150 --------EQTM----TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT 217 (440)
Q Consensus 150 --------~~~~----~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~ 217 (440)
..+. .+...+..+.|..++.++++.||..++.+|+.+....+ ..++.|..++.+.+ ..
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d-~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPD-PL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCC-HH
Confidence 0000 00001122345556666666666666666666643321 23678888887776 89
Q ss_pred HHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC
Q psy9169 218 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 297 (440)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~ 297 (440)
++..++.+|..+.... .+.+.+...|.++++.++..|+++|+.+... ..++.|+.+|.+
T Consensus 791 VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D 849 (897)
T PRK13800 791 VRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTD 849 (897)
T ss_pred HHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcC
Confidence 9999999998885432 1335678888999999999999999887532 236999999999
Q ss_pred CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169 298 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354 (440)
Q Consensus 298 ~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n 354 (440)
++..|+..|+++|+.+ .+++ ...+.|...+++.++.|+.+|..+|..
T Consensus 850 ~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 850 PHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999997 2232 235778899999999999999999864
No 39
>KOG2759|consensus
Probab=99.17 E-value=3.5e-09 Score=98.06 Aligned_cols=279 Identities=14% Similarity=0.156 Sum_probs=203.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCC-HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGV-VPICVELL-DDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~-i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.+..+.+|..+|.-.+..+.+.+.++.+.... .... .+-.+ ...|-..+ ++.+++...-|++||..+... ++.|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 67788899999998888899999988765542 1111 01111 22333344 447778888899999999866 77899
Q ss_pred HHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 154 TVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
.++..+++..++..+.+ .+..++.+.+.+++-+.-+.+.+ ..+...+.|+.|..+++++..+.+.+-++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999953 33788999999999999874444 6667889999999999999889999999999999997
Q ss_pred CCCCCCCHH-----HHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhcc-------C--------------Ch------
Q psy9169 232 NKNPAPDFE-----KIKICLPLLNQLIH---TTDVETLSDICWALSYISD-------G--------------HN------ 276 (440)
Q Consensus 232 ~~~~~~~~~-----~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~-------~--------------~~------ 276 (440)
..+...... ....-++..++.|. -+|+++..+.-..-..|-. . ++
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 762211111 11222344444443 2566666554443333221 1 00
Q ss_pred ---hhHHHHHhc--CChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q psy9169 277 ---DKIQAVVDT--GVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350 (440)
Q Consensus 277 ---~~~~~l~~~--g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~ 350 (440)
+....+.+. .++..|+++|..+ +|.+..-||.=||..+...|+....+.+.|+=+.+++++.+++++|+.+|..
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 222233332 4789999999765 4788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy9169 351 TISNITAG 358 (440)
Q Consensus 351 ~L~nl~~~ 358 (440)
|+.-+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 99887654
No 40
>KOG2160|consensus
Probab=99.17 E-value=3.3e-09 Score=96.93 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=156.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHH
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPK 163 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~ 163 (440)
.+.+.+.+..|+..|..++.. -++...++..|++.+++.++.+.++.+|..|+|+++.++..+|.....+++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 467788899999999877642 245688999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhCCCCCCCHHH
Q psy9169 164 FLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEK 241 (440)
Q Consensus 164 L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (440)
|+..|.+.+ ..++..|+.+++.+..+.+...+.+...++...|..++.+. .+..+++.++..+..+............
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999755 67889999999999999999999999999999999999974 4689999999999999987644444333
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 242 IKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 242 ~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
..++...+..+....+.++...++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44555556666667777777777777665553
No 41
>KOG2759|consensus
Probab=99.17 E-value=1.5e-08 Score=93.85 Aligned_cols=322 Identities=15% Similarity=0.093 Sum_probs=224.0
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------HhCCHHHHHHhccCCChHHHHHHHHHHHHHh
Q psy9169 74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELI-------EAGVVPICVELLDDENPNTQFEATWALTNIA 145 (440)
Q Consensus 74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii-------~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla 145 (440)
..+..++.+++. ..++....++..+..+++.++ ....+. +.-.-+.++.+|...+.-+...+.|++..++
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~--sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR--SRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc--hHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 356778888874 346677778888888887664 222222 2245788999998888999998999999998
Q ss_pred CCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhh-CCCCcHHHHHHHH
Q psy9169 146 SGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV-QPNTPTTFLRNIV 223 (440)
Q Consensus 146 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll-~~~~~~~~~~~a~ 223 (440)
...+.........=....|-..+++ .+......|+.+|..+... +++|..+....++..++..+ .+..+-.++-..+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 6533321110001112334445555 4466777788899888887 77888888888899999988 4444578888999
Q ss_pred HHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCh------hhHHHHHhcCChHHHHHhcc
Q psy9169 224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHN------DKIQAVVDTGVVPRLVELLD 296 (440)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~------~~~~~l~~~g~~~~Lv~lL~ 296 (440)
.|+.-|..++ +..+.....+.++.|..++++ ..+.+..-++.++.|+....+ +....++..++.+.+-.+..
T Consensus 222 fciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 9999888776 333334456889999999976 567899999999999998774 44456666665554444432
Q ss_pred C--CChhHHHHHHHHHHH-------hhc----------C----C---------hHHHHHHHHcC--CHHHHHHHhcCC-C
Q psy9169 297 S--EETTILTAALRTVGN-------IAT----------G----N---------DHQTDCVIQAG--GLQKMKKLLSSS-R 341 (440)
Q Consensus 297 ~--~~~~v~~~al~~L~n-------l~~----------~----~---------~~~~~~l~~~g--~l~~L~~ll~~~-~ 341 (440)
. +++++....-+.-.. +++ | + .++...+.+.+ ++..|+.+|+.+ +
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 2 344433222221111 111 0 1 12333444433 789999999876 4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 342 VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 342 ~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
|.+-.-||.=++......|+- ...+++.||-+.+.+|++|+|++|+-.|..++.++..
T Consensus 381 p~iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 888888999999999877654 6788999999999999999999999999999988764
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.17 E-value=2.8e-09 Score=108.55 Aligned_cols=309 Identities=20% Similarity=0.225 Sum_probs=176.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.+.+.|.++++..+..|++++.++.. ..+++. +++.+..++.+++|.+|..|+.++..+....++.
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-- 148 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-- 148 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH--
Confidence 355666666666677777777776666531 122222 4566666666666666666666666665443332
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh----------------------------------------hCCCchh
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNI----------------------------------------AGDGARA 193 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl----------------------------------------~~~~~~~ 193 (440)
+... .++.+..+|.++++.++..|+.++..+ +...+..
T Consensus 149 -~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 149 -VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp -HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred -HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 1122 456666666666666666666666666 3222211
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
... ..+++.+..++.+.. ..++-.++.++..+.... .....+++.|..++.+.++.++..++.+|..++.
T Consensus 227 ~~~---~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 227 ADK---NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred hhH---HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 100 123334444443222 455555555555544332 2567788888888888888888888888888887
Q ss_pred CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHH
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTI 352 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll-~~~~~~i~~~a~~~L 352 (440)
..... +. .....+..+..+++..++..++.+|..++. +..... +++.|...+ ..++++++.+++.++
T Consensus 297 ~~~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I 364 (526)
T PF01602_consen 297 SNPPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAI 364 (526)
T ss_dssp HCHHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred ccchh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHH
Confidence 66222 21 212223333347778888888888888874 333333 466678878 455788999999999
Q ss_pred HHHhcCCh----HHHHHHhh---cCc-------chHHHHHHHHcC-----cHHHHHHHhc-CCcHHHHHHHHHHHHhhCC
Q psy9169 353 SNITAGNS----RQIDHVIQ---EGE-------LNQMALLVEESG-----GLEKLEALQH-HENETVYQKCYKIISMAFN 412 (440)
Q Consensus 353 ~nl~~~~~----~~~~~~i~---~~~-------~~~~~~~l~~~g-----~l~~l~~L~~-~~~~~v~~~a~~il~~~~~ 412 (440)
+.++...+ ..++.+++ .+. ...+...+.... .+..+..+.. -.++++...+.+++..|.+
T Consensus 365 ~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 365 GDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred HHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 99885322 23333333 111 223334444333 2455555444 5678899999999999876
Q ss_pred CCcc
Q psy9169 413 DSAE 416 (440)
Q Consensus 413 ~~~~ 416 (440)
..++
T Consensus 445 ~~~~ 448 (526)
T PF01602_consen 445 LIEN 448 (526)
T ss_dssp HHTT
T ss_pred cccc
Confidence 5443
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.16 E-value=7e-08 Score=99.50 Aligned_cols=254 Identities=13% Similarity=0.061 Sum_probs=190.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..|.+.|++.+...+..|++.+..+.....+. +.+.+.++.++.+++.+++.-+...|.+++...++..-
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal- 104 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL- 104 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-
Confidence 4567888889988888888887666555444311 23567777888889999999999999999876665322
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
-++..|.+=+.++++.+|..|+.+|++|-.. .. ..-+++.+.+.+.+.+ +-+++.|+.++.++.+..
T Consensus 105 ----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i-----~e~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~- 171 (746)
T PTZ00429 105 ----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SV-----LEYTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDD- 171 (746)
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HH-----HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhC-
Confidence 2477888899999999999999999998643 11 1124566777776655 899999999999998765
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
+ +.....++++.|.++|.+.|+.++.+|+.+|..+....+.... ...+.+..|+..|..-++..+...+.+|....
T Consensus 172 p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 172 M--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR 247 (746)
T ss_pred c--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence 2 2334467889999999999999999999999999876554322 33455777888887777777888888886644
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
..++.... .++..+...|++.++.|.-+|+.++.++...
T Consensus 248 P~~~~e~~-----~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 248 PSDKESAE-----TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCCcHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 33332222 4567788888899999999999999999854
No 44
>KOG1222|consensus
Probab=99.12 E-value=4.1e-08 Score=92.21 Aligned_cols=284 Identities=15% Similarity=0.144 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 166 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~ 166 (440)
...+...|+..+.+++..-+ .-..+...+++..|++.|..++.++.......|..++.. .+++..+.+.|++..|++
T Consensus 276 QeqLLrva~ylLlNlAed~~--~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDIS--VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhh--HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHH
Confidence 34555667788888864322 235677889999999999878889999999999999876 456778888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169 167 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246 (440)
Q Consensus 167 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 246 (440)
++...+++++...+..+.|++-+ ...|..++..|.+|.|..++.++... .-|...++.++.++ ....+.....++
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD-~~K~MfayTdci 427 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDD-DAKAMFAYTDCI 427 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCc-HHHHHHHHHHHH
Confidence 99999999999999999999988 45678888999999999999876632 33555666777665 445556667788
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHhc--------------------------------------cCChhhHHHHHhcCC
Q psy9169 247 PLLNQLI-HTTDVETLSDICWALSYIS--------------------------------------DGHNDKIQAVVDTGV 287 (440)
Q Consensus 247 ~~L~~ll-~~~d~~i~~~a~~~L~~l~--------------------------------------~~~~~~~~~l~~~g~ 287 (440)
+.+.+.+ ...+.++-.+.+..-.|+| .+.......+++ .
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence 8776554 3344444333332223333 222222122221 2
Q ss_pred hHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcCChHHHH
Q psy9169 288 VPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 288 ~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~ 364 (440)
+..|...++.. +.....+++.+++|+...+-...+.+-+.+++|++...|..+ ..+++-+...+++-++...
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~----- 580 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL----- 580 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-----
Confidence 44455555443 456778899999999987777888888899999999999865 3456666666666655321
Q ss_pred HHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169 365 HVIQEGELNQMALLVEESGGLEKLEALQHH 394 (440)
Q Consensus 365 ~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~ 394 (440)
..+.++...|.++.+..|+..
T Consensus 581 ---------~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 581 ---------DCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred ---------HHHHHhCccccHHHHHHHHHh
Confidence 224455556666666665543
No 45
>KOG2160|consensus
Probab=99.10 E-value=6.5e-09 Score=95.07 Aligned_cols=188 Identities=18% Similarity=0.277 Sum_probs=155.9
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHH
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 206 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L 206 (440)
.+.+++-+..|+--|-.++. +-++...++..|+...++.++.+.+..+|+.|+|+|+..+.++|..+..+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45566777888888888874 36677889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
+.++..+++..++..|+.+++.+.++..+.............|...+.+ .+...+..++..+.++..........+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999988888999999999999999986666666566668899999987 67888999999999999777655455455
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.+....+..+....+.++...++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5666666666666677788888777665543
No 46
>KOG2171|consensus
Probab=99.08 E-value=9.3e-08 Score=98.90 Aligned_cols=317 Identities=16% Similarity=0.091 Sum_probs=210.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---HH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS---EQ 151 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~---~~ 151 (440)
.++.|++..+|+++..|..|+..|..+...-.+.....+ ..+.+.|.+.+.+++..++..|+.+++.++...+ ..
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 345556666799999999999999877543222211111 1245666677755555599999999999987653 22
Q ss_pred HHHHHhcCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHH
Q psy9169 152 TMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAI 226 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L 226 (440)
...+. ..+|.++..+ ..++.+....++.+|..++...+.+-...+. .++...+.+..+.. +..++..|+.+|
T Consensus 197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 22332 3455555544 4566777788899999998766654333221 35566666666443 678899999999
Q ss_pred HhhhhCCCCC---CCHHHHhhHHHHHHHhhcC--CC--------------HHHHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy9169 227 SNLCRNKNPA---PDFEKIKICLPLLNQLIHT--TD--------------VETLSDICWALSYISDGHNDKIQAVVDTGV 287 (440)
Q Consensus 227 ~~l~~~~~~~---~~~~~~~~~~~~L~~ll~~--~d--------------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~ 287 (440)
..++... |. ........+++.+..++.. .| ...-..|..+|-.++.+-+.. .+-.-+
T Consensus 274 vs~~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~ 349 (1075)
T KOG2171|consen 274 VSLSEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL 349 (1075)
T ss_pred HHHHHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence 8888772 11 1112445667777766632 11 123456677777777654422 111234
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
++.+-.+|.++++.-|.+|+.+|+.++.|..+.....++ .+++.++..+.+++|.||..||.+++.++..=...++.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk-- 426 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK-- 426 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH--
Confidence 667777889999999999999999999999888777665 58999999999999999999999999999763332221
Q ss_pred hcCcchHHHHHHHHcCcHHHHHH-HhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 368 QEGELNQMALLVEESGGLEKLEA-LQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 368 ~~~~~~~~~~~l~~~g~l~~l~~-L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
.+... .++.|.. +-..+++.|+..|...+-.|+++-
T Consensus 427 ------~~~e~-----l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 427 ------KHHER-----LPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred ------HHHHh-----ccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 11222 2334444 444558899999999998887643
No 47
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.06 E-value=6.9e-09 Score=97.75 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=163.3
Q ss_pred HHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 161 IPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 161 i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
...++.+|.. .+.++....+..+..+..+.+...+.+.. .....++++++.+++ ..+...++..|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHc
Confidence 4455555553 56899999999999999888876666654 236788888777775 88999999999999988
Q ss_pred CCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc------cC-CChh
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL------DS-EETT 301 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL------~~-~~~~ 301 (440)
.+. .......+.++.++..+. +++.+.+..++.++..|..... ....+.+.|+++.+..+| .+ ....
T Consensus 136 ~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 733 333323556666666654 3556778999999999986555 458888899999999999 22 2457
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHH
Q psy9169 302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~ 380 (440)
++..++.|++-++.. ++....+...++++.|.+++... .+.+.+-+..++.|++....+. +...+-
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv 280 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMV 280 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHH
Confidence 888999999988764 45677788889999999999854 6789999999999999866532 356667
Q ss_pred HcCcHHHHHHHhcCC--cHHHHHHHHHHHH
Q psy9169 381 ESGGLEKLEALQHHE--NETVYQKCYKIIS 408 (440)
Q Consensus 381 ~~g~l~~l~~L~~~~--~~~v~~~a~~il~ 408 (440)
.+|++..+..|...+ ++|+++--..+-+
T Consensus 281 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 281 LCGLLKTLQNLSERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp HH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 788899999887754 7888776655544
No 48
>KOG1293|consensus
Probab=99.05 E-value=2e-08 Score=97.74 Aligned_cols=232 Identities=14% Similarity=0.103 Sum_probs=181.5
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMP 204 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~ 204 (440)
.+.+|+....+..-..|.+.+.+.....+++.|+++.|+.+++..+ .+...+.+.+++..+.......+.++..+.++
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 4567787888889999999998988889999999999999998766 66776677777777766666778888999999
Q ss_pred HHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHH
Q psy9169 205 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 282 (440)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l 282 (440)
.|+.++.+.++..++.....++.++.......+. ......+++.+..++..+...+...-+....+++... +....+
T Consensus 99 ~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il 177 (678)
T KOG1293|consen 99 KLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLIL 177 (678)
T ss_pred HHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhee
Confidence 9999999887788999999999999977632222 2233566777666666455556666666666676655 444677
Q ss_pred HhcCChHHHHHhccCCChhHHHHHHHHHH---HhhcCChHHHHH----HHHcCCHH--HHHHHhcCCChhHHHHHHHHHH
Q psy9169 283 VDTGVVPRLVELLDSEETTILTAALRTVG---NIATGNDHQTDC----VIQAGGLQ--KMKKLLSSSRVNIVKEAAWTIS 353 (440)
Q Consensus 283 ~~~g~~~~Lv~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~~----l~~~g~l~--~L~~ll~~~~~~i~~~a~~~L~ 353 (440)
.++|+.+.+.-++.+.+...+..|+.+++ ++..+++..... +.+.|+.+ .+..++.+++...+-.++.++.
T Consensus 178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~ 257 (678)
T KOG1293|consen 178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV 257 (678)
T ss_pred ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence 88899999999999888899999999999 888887765543 34556666 5677888888888889999999
Q ss_pred HHhcCC
Q psy9169 354 NITAGN 359 (440)
Q Consensus 354 nl~~~~ 359 (440)
++..++
T Consensus 258 ~~~~~s 263 (678)
T KOG1293|consen 258 PYLRKS 263 (678)
T ss_pred HHHhcc
Confidence 888765
No 49
>KOG0168|consensus
Probab=99.03 E-value=4.9e-08 Score=97.39 Aligned_cols=293 Identities=14% Similarity=0.157 Sum_probs=211.2
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHH-hCCCcHHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH
Q psy9169 119 VPICVELL-DDENPNTQFEATWALTNI-ASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 119 i~~Lv~lL-~~~~~~i~~~a~~~L~nl-a~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
+..|+.-| ...++..|.+|+.-|+.+ ..++.+...-+--.-.+|.|+.+|+..+ .++.-+|+.+|.+++.--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45555556 344888888888877765 4455555444444568999999999865 99999999999999988888778
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
.++.+++||.|+.-|..-.-..+.+.++.+|-.|++.. +......+.+...+..|.--...++..|+.+..|+|..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999988876555789999999999999876 334556788888888887767789999999999999542
Q ss_pred -hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCC----hhHHHH
Q psy9169 276 -NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSR----VNIVKE 347 (440)
Q Consensus 276 -~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~----~~i~~~ 347 (440)
++....++ ..+|.|..+|++.+....+.++.|+..++. ..++..+.+...|++.-..+++.-.. ..+...
T Consensus 326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 23334444 459999999999999999999999999985 45667788999999999999997543 245666
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCc--HHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG--LEKLEALQHHENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~--l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
...+|+-++.+++.....++.++....+...+.-.+. -.-+..++.....++++...-+++-++..+.+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e 474 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVE 474 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCccc
Confidence 7888999999887664444443333333222222110 11122223333456777777777766655444
No 50
>KOG1241|consensus
Probab=99.02 E-value=1.2e-08 Score=100.56 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=190.5
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 77 PEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 77 ~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
-.++.... .++..+++.|+.+|.+-+-..+.-.-.+.-..=++...++...+++.+++..|+.||..|.+-..+....
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 3567788999998887764332100111111223445556668899999999999999999887777777
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----------------hHHH--HHhcCChHHHHhhhCCCC--
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----------------ARDL--LLGLGTMPQILALVQPNT-- 214 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----------------~r~~--i~~~g~i~~L~~ll~~~~-- 214 (440)
.+....+..-+.-+++++++|.-+++...+++|...-+ .... -.-.+++|.|+++|.+.+
T Consensus 255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~ 334 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED 334 (859)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence 77777888888889999999999999999999843211 0000 012357888888887422
Q ss_pred ----cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy9169 215 ----PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 290 (440)
Q Consensus 215 ----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~ 290 (440)
+=..-..+..||.-+++.... .++..++|.+-+-++++|..-+..+..+++.+..+.....-.-+-.+++|.
T Consensus 335 ~d~DdWnp~kAAg~CL~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 335 DDDDDWNPAKAAGVCLMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred cccccCcHHHHHHHHHHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 112333444444444433211 134578888888889999999999999999999888766555555788999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChHHHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 291 LVELLDSEETTILTAALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
++.++.+++-.++..+.|++|.++...++.+. ...-.+.++.++.-|. ..|.+...+||++.+++.
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 99999988888999999999999976654322 1122234555555443 368899999999999993
No 51
>KOG0946|consensus
Probab=99.00 E-value=2.8e-07 Score=91.54 Aligned_cols=335 Identities=16% Similarity=0.173 Sum_probs=239.2
Q ss_pred ccCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCC
Q psy9169 72 IKMTVPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGT 148 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~ 148 (440)
..++|+.|++.+.+.. .+.|..|++.|..+.. . ....+-..++++|+..| ...++++...++-++.++.+..
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr----k-YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----K-YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH----H-HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 4578999999998655 7889999999986632 1 24444556689999999 5578999999999999998764
Q ss_pred c------HH----------HHH-HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHh-cCChHHHHhh
Q psy9169 149 S------EQ----------TMT-VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLG-LGTMPQILAL 209 (440)
Q Consensus 149 ~------~~----------~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~-~g~i~~L~~l 209 (440)
. +. .+. +-..+.|..|+..+...+-.||..++..|.++.... .+.++.++. ..+|..|+.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2 11 222 335678999999999999999999999999988554 457777764 4689999999
Q ss_pred hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC---CH-HHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---DV-ETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---d~-~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
|.+.. ..++..++..|..|.++.......+....++..|..++..+ |. -|..+|+..+-+|...+....+.+.+.
T Consensus 175 L~Dsr-E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 175 LRDSR-EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred Hhhhh-hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 98777 77888999999999998744445556688999999999642 33 578889999999998888887899999
Q ss_pred CChHHHHHhccCC---Ch--------h--HHHHHHHHHHHhhcC-Ch-----HHHHHHHHcCCHHHHHHHhcCCC--hhH
Q psy9169 286 GVVPRLVELLDSE---ET--------T--ILTAALRTVGNIATG-ND-----HQTDCVIQAGGLQKMKKLLSSSR--VNI 344 (440)
Q Consensus 286 g~~~~Lv~lL~~~---~~--------~--v~~~al~~L~nl~~~-~~-----~~~~~l~~~g~l~~L~~ll~~~~--~~i 344 (440)
+.+|+|.++|.-. +. . -...++.++..++.. +. .....+..++++..|..++-++. .+|
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI 333 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI 333 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence 9999999888532 21 1 123466666666642 21 23346778899999999998873 489
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhcC---cchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCcccc
Q psy9169 345 VKEAAWTISNITAGNSRQIDHVIQEG---ELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAENS 418 (440)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~i~~~---~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~~~~ 418 (440)
+.++.-+++++..|+...-..+.+.. ..++... .+-.+..+..+. ....+=.+..++..|+.+.++..
T Consensus 334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~s------ivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPS------IVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccc------hhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 99999999999998765544443311 0110000 011122233333 44556666677777776555443
No 52
>KOG2023|consensus
Probab=98.99 E-value=9.3e-08 Score=93.15 Aligned_cols=271 Identities=18% Similarity=0.229 Sum_probs=179.5
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
.+..+|.+++..+++++..|-.|+.++-..+-... .....-+ ...+..+..+-.+.+|++|...+.+|.-+..-.++.
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 45678999999999999999999999876654332 2111111 234555555558899999999999999997543332
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCC-cHH-----------
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNT-PTT----------- 217 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~-~~~----------- 217 (440)
.. ---.++++.+++.-++.+++|.-.|+.....+|.. +.+++.+.. ..++|.|++-+..++ +..
T Consensus 250 l~-phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 250 LV-PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred cc-cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 11 11136788888888899999999999999999977 456555542 346777765554221 111
Q ss_pred -------------------------------------------HHH---HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHH
Q psy9169 218 -------------------------------------------FLR---NIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 251 (440)
Q Consensus 218 -------------------------------------------~~~---~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 251 (440)
+++ .++..|+|+... ....-++|.|-+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~-------elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD-------ELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH-------HHHHHHHHHHHH
Confidence 111 122222332222 123445666667
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhccCCChhHHHHHHHHHHHhhcC--ChHHHHHHHHc
Q psy9169 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSEETTILTAALRTVGNIATG--NDHQTDCVIQA 327 (440)
Q Consensus 252 ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~--g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~l~~~ 327 (440)
.|.+++..+++++..+++.++.+-. +-++.+ .++|.|+.+|.+..+-||.-+||+|+..+.. .+...+.+.
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-- 475 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-- 475 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--
Confidence 7778888999999999999997643 333333 4689999999999999999999999987641 111112121
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 328 g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
.++..|++.+-+++..+++.||.++.-+-..
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 1334444444556788999999988887754
No 53
>KOG1517|consensus
Probab=98.92 E-value=1.7e-07 Score=95.54 Aligned_cols=272 Identities=15% Similarity=0.144 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL 167 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l 167 (440)
...|+.|...-...-+....||-+ +|.+++.|-+ .--|..|+..|+..-.-.+=....-+.-|+.|.++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL 520 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL 520 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 345666666655555555555433 4555555422 2345667777776655445555566677999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169 168 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245 (440)
Q Consensus 168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 245 (440)
|+++..+++...+.+-..|-.-.+.++..+++.++-...++.+..+. +.+-+.-++..|+.++++-.-........++
T Consensus 521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l 600 (1387)
T KOG1517|consen 521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL 600 (1387)
T ss_pred hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence 99999999998888888888776999999999999999999998632 4578888999999999886333333344678
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC----ChHH
Q psy9169 246 LPLLNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG----NDHQ 320 (440)
Q Consensus 246 ~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~----~~~~ 320 (440)
+......++++ .+-++.-+|-+|+.|-...++..-.=+..++.+.|+.+|.++-++|+.+|+++||.+..+ .+++
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 88888888875 577888899999999987776655556778999999999999999999999999999885 3444
Q ss_pred HHHH------------HHcCCH---HHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169 321 TDCV------------IQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368 (440)
Q Consensus 321 ~~~l------------~~~g~l---~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~ 368 (440)
+..+ ++..+. ..++.+++.+.+-++++.+-+|+.++.|...++..+..
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 4333 222222 36777788889999999999999999887766655544
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.90 E-value=3.9e-08 Score=92.67 Aligned_cols=231 Identities=13% Similarity=0.221 Sum_probs=160.4
Q ss_pred CCHHHHHHhc-cC-CChHHHHHHHHHHHHHhCCCcHHHHHHHh------cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169 117 GVVPICVELL-DD-ENPNTQFEATWALTNIASGTSEQTMTVIN------ANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188 (440)
Q Consensus 117 g~i~~Lv~lL-~~-~~~~i~~~a~~~L~nla~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 188 (440)
+....++.+| .. +++++...++..+..+....+...+.+.. ......+++++.+++..+...|+.+|..++.
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3456666666 34 78899999999999999888876666654 2368889999999999999999999999997
Q ss_pred CCchhHHHHHhcCChHHHHhhhCCC---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-----c--CCCH
Q psy9169 189 DGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-----H--TTDV 258 (440)
Q Consensus 189 ~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-----~--~~d~ 258 (440)
.++....... .+.++.+++.+.+. ++.+++..++.+|.+|.+.+ .........+.++.+..++ . ..+.
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 7655433321 45667777777642 23567789999999999876 3344444588899999988 2 2456
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHH
Q psy9169 259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKL 336 (440)
Q Consensus 259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~l 336 (440)
+++-.++.+++-|+.... ....+.+.++++.|+++++. ...+|.+-++.++.|++..... ....++..|+++.+-.+
T Consensus 213 Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 888999999999996554 45778888999999999965 4678999999999999987664 77788888888888777
Q ss_pred hcCC--ChhHHHHHHH
Q psy9169 337 LSSS--RVNIVKEAAW 350 (440)
Q Consensus 337 l~~~--~~~i~~~a~~ 350 (440)
.... |+++....-+
T Consensus 292 ~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEF 307 (312)
T ss_dssp HSS--SSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 7653 6666655443
No 55
>KOG3678|consensus
Probab=98.90 E-value=4.4e-07 Score=85.15 Aligned_cols=269 Identities=18% Similarity=0.184 Sum_probs=186.0
Q ss_pred ccCCHHHHHHHhcCCCHHH--HHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC
Q psy9169 72 IKMTVPEMIEGMKSSNPKM--RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT 148 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~ 148 (440)
...++..|++++++++.+. +.+|.+.|..+++.. +.+.++..| +..++.+- ....++.+...+.+|.++..++
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 3467889999999988665 899999999888654 356777766 44444444 4567899999999999999999
Q ss_pred cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
.+....++..|++..++...+..++.+..+|+.+|+|++-+. ...+..+++..+-+.|..+-.+. +.-++-++|.++.
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV~ 332 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAVA 332 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999543 45566677777777777665555 4778889999999
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
.|+.++ .....+...+.+..+-.++.+.|+..... --...+.+. ....+.+|+.+|.+...+.+.-+.
T Consensus 333 vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~A 400 (832)
T KOG3678|consen 333 VLATNK-EVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGA 400 (832)
T ss_pred hhhhhh-hhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHH
Confidence 999887 33333344555554445555555432211 001111111 113478899999876555444333
Q ss_pred HHHHHhhc--CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 308 RTVGNIAT--GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 308 ~~L~nl~~--~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
+-+.-=++ .-....+.+-+-|+++.|..+.++++..-.+-|..+|.-|..
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 32222111 112234556678999999999998887666666667766654
No 56
>KOG0946|consensus
Probab=98.85 E-value=3.4e-06 Score=84.06 Aligned_cols=294 Identities=13% Similarity=0.214 Sum_probs=220.3
Q ss_pred CCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCC------CCc---------HHHHHH-hCCHHHHHHhccCCChHHHH
Q psy9169 74 MTVPEMIEGMKS--SNPKMRMIATRSARKMLSKER------HPP---------IDELIE-AGVVPICVELLDDENPNTQF 135 (440)
Q Consensus 74 ~~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~------~~~---------~~~ii~-~g~i~~Lv~lL~~~~~~i~~ 135 (440)
.+++.++.-|+. .|++..-.++..+..+++.+. ++. .+.++. .+-|..|+.++...+-.+|.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 578889999983 578888899999999988763 111 233443 58899999999888899999
Q ss_pred HHHHHHHHHhCCCc-HHHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC
Q psy9169 136 EATWALTNIASGTS-EQTMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 213 (440)
Q Consensus 136 ~a~~~L~nla~~~~-~~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~ 213 (440)
.++..|.++-+.-+ +.+..+ ...-+|..|+.+|.+..+-+|..++..|..+..+++..+..+.-.+++..|..++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999966544 444444 4567999999999999999999999999999999999999888888999999999843
Q ss_pred C---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC---CCH----------HHHHHHHHHHHHhccCC-h
Q psy9169 214 T---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDV----------ETLSDICWALSYISDGH-N 276 (440)
Q Consensus 214 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~d~----------~i~~~a~~~L~~l~~~~-~ 276 (440)
. ..-+...|+..|-||..+......+....+.+|.|.++|.. .|. .-...++.++..+..-. +
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt 300 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT 300 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 23578899999999999887777788888999999988853 231 12345566666665321 1
Q ss_pred -----hhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcC----------CHHHHHHHhcC
Q psy9169 277 -----DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG----------GLQKMKKLLSS 339 (440)
Q Consensus 277 -----~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g----------~l~~L~~ll~~ 339 (440)
.+...+.+.+++..|..++.|+ ..+|+..++.++++.+.|+......+.+.. ++-.++.+..+
T Consensus 301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne 380 (970)
T KOG0946|consen 301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE 380 (970)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence 2224667789999999999887 357999999999999999987777666521 23334444444
Q ss_pred C-ChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 340 S-RVNIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 340 ~-~~~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
. .+..|..+.+++......+.+--..++
T Consensus 381 ~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 381 KQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred cCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 4 357888888888777765444333333
No 57
>KOG3678|consensus
Probab=98.80 E-value=5.3e-07 Score=84.64 Aligned_cols=274 Identities=18% Similarity=0.200 Sum_probs=191.5
Q ss_pred HHHHHHhCCHHHHHHhccCCCh--HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHh
Q psy9169 110 IDELIEAGVVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNI 186 (440)
Q Consensus 110 ~~~ii~~g~i~~Lv~lL~~~~~--~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl 186 (440)
.+.+...|.+..|+.++..++- .++.+|...|-.+.. .++++.+...| +..++.+-+.. .++.....+.+|+++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3555667899999999976665 459999999999976 57788887776 55666655543 378889999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169 187 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDIC 265 (440)
Q Consensus 187 ~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~ 265 (440)
..++.+....++..|+++.++--.+..+ +.++++++.+|.|++-+.....+ -.+...+...|..+-.+.|+-++..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999988899999999999988887766 89999999999999876522222 223355666777777788889999999
Q ss_pred HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh-HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 344 (440)
Q Consensus 266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i 344 (440)
-+++.|+...+ .-..+...|.+..+-.++.+.++. ....+ ..-+.|.. ..-++.|+.+|++..-+-
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FARD~----hd~aQG~~--------~d~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFARDA----HDYAQGRG--------PDDLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhhhh----hhhhccCC--------hHHHHHhhhhhhcchhhh
Confidence 99999987554 224455566555555555544442 11111 11112211 124677888888765555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
+..+++-++-=++-...| .-...+.+.|.++.|..+..+++.--.+.|..+|.-+-
T Consensus 396 q~i~AF~l~~EAaIKs~Q-----------~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQ-----------GKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhc-----------cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 555555555433322111 12456778999999999999998887888888887653
No 58
>KOG0213|consensus
Probab=98.73 E-value=8.6e-07 Score=87.54 Aligned_cols=316 Identities=14% Similarity=0.181 Sum_probs=198.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC--cHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERH-PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT--SEQ 151 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~--~~~ 151 (440)
.+..++..|++.++.++.+|+..+..++.--+. ..-..+...|++ |.+.|....|++.-..+.++..|.... ...
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 445567778899999999998877766432111 112334444543 778888889998766666666554321 111
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+.. -.+++|.|..+|++.+.+++++++..++.||..++++ |+.+. +--.|+.+|.... .++++++..++..
T Consensus 878 ~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahk-K~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 878 TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHK-KEIRRAAVNTFGY 951 (1172)
T ss_pred CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHH-HHHHHHHHhhhhH
Confidence 111 2489999999999999999999999999999777653 44433 3344666676665 7999999999999
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~ 308 (440)
++..-.| ..++..|+.-|...+-..+....-+|+-.+..... -.++|.|+.=-..++..|+.-.++
T Consensus 952 IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 952 IAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred HHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHH
Confidence 9976533 34556666656555444444333344333322111 134777777667788889999999
Q ss_pred HHHHhhcCChHH-HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC-----hHHHHHHhh------cCc-----
Q psy9169 309 TVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-----SRQIDHVIQ------EGE----- 371 (440)
Q Consensus 309 ~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~i~------~~~----- 371 (440)
+++.+...-.+. .+++. -+.|.|.+.|.+.+..-|..|+-++.+++-|. .+..-.+++ +..
T Consensus 1018 alsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhvi 1095 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVI 1095 (1172)
T ss_pred HHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHH
Confidence 988776432221 22222 36788888888888888888888888888542 222222332 011
Q ss_pred ------chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 372 ------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 372 ------~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
.+.++..+...-.+..+..=+-|+...|++.-..+++.++-..
T Consensus 1096 qa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1096 QAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence 1122222222222333334455888888888888777766543
No 59
>KOG1059|consensus
Probab=98.69 E-value=1.3e-05 Score=79.34 Aligned_cols=220 Identities=19% Similarity=0.209 Sum_probs=167.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
-+.++.+|++.-+-++..|+..+.+++-.-+ +.+ .-.+|.|++-|.+++|.++..|+.+++.+|..+|.+--
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYP----eAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYP----EAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhh----HhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence 3667888889999999999998888876544 121 13689999999999999999999999999998886422
Q ss_pred HhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 156 INANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
..-|.|.++|-..+ -=+.-..+..+++|+--.|.... ..+++|.+++.+....+++-.++.++........
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 45678888886533 22444567788888866565533 4689999999987767777777777664432222
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
-+.......-+++.|-.++.++|+.+.--+|-+++.+....+..++.- -+.++.+|.+.++.++..|+..+--++
T Consensus 290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 223445567788999999999999999999999999998877554442 567889999999999999999888776
Q ss_pred cC
Q psy9169 315 TG 316 (440)
Q Consensus 315 ~~ 316 (440)
..
T Consensus 365 sk 366 (877)
T KOG1059|consen 365 SK 366 (877)
T ss_pred hh
Confidence 53
No 60
>KOG1241|consensus
Probab=98.68 E-value=5.1e-06 Score=82.60 Aligned_cols=276 Identities=18% Similarity=0.214 Sum_probs=172.0
Q ss_pred CCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC
Q psy9169 74 MTVPEMIEGMKS-------SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146 (440)
Q Consensus 74 ~~i~~lv~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~ 146 (440)
..+|.|+++|.. +++..-..|-.||.-+..--. +.++. .++|.+-+-+++++..-+..|+.+++.+-.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~----D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG----DDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc----ccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 467888888863 223444445455542221111 12222 234444445578888999999999999998
Q ss_pred CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH-HHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL-LLGLGTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~-i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
+....+..-+..+++|.++.++.++..-+++.+.|+||.++...++.+.- ....+.++.++.-|.+ .+.+..++||+
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWA 471 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWA 471 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHH
Confidence 87776666677899999999999998889999999999999876654322 2223344444444432 36889999999
Q ss_pred HHhhhhCC-----CC-C--CCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH-
Q psy9169 226 ISNLCRNK-----NP-A--PDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE- 293 (440)
Q Consensus 226 L~~l~~~~-----~~-~--~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~- 293 (440)
+.+|+..- .. . +.......++..|++.-.. ++..++..+..+|..|....+.....++. ++...+..
T Consensus 472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~k 550 (859)
T KOG1241|consen 472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEK 550 (859)
T ss_pred HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHH
Confidence 99999431 01 0 1111222333333333332 45679999999999999877755443332 22222222
Q ss_pred --------hccCCC----hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169 294 --------LLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG 358 (440)
Q Consensus 294 --------lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~ 358 (440)
.+...+ .+++..-|.+|+.+..........+.+ .+...|++++.++ +..+..+|..+++-++..
T Consensus 551 l~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 551 LDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 222222 246666777777776533323332333 4677889999884 456888999999988864
No 61
>KOG2973|consensus
Probab=98.66 E-value=8.3e-06 Score=73.01 Aligned_cols=274 Identities=16% Similarity=0.191 Sum_probs=175.9
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 198 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (440)
...++++|.+.+|.++..|+.-+..++.. +-..-.--+...++.+.+++....+ .+.|+.+|.|++.+ +..|+.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 34578899999999999999999998865 2111111223568889999988766 78899999999988 67777777
Q ss_pred hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHH------hhHHHHHHHhhcCCC--HHHHHHHHHHHHH
Q psy9169 199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI------KICLPLLNQLIHTTD--VETLSDICWALSY 270 (440)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~~~~L~~ll~~~d--~~i~~~a~~~L~~ 270 (440)
.. .+..++.++.+.. ...-..+|.+|+|+++.+......... .+++.....+..++- ..-....+..+++
T Consensus 81 ~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 66 7888888887765 467888999999999886332211111 222333333333221 1334566677788
Q ss_pred hccCChhhHHHHHhcCCh--HHHHHhccCCChhHHH-HHHHHHHHhhcCChHHHHHHHHc--CCHHHHH-----------
Q psy9169 271 ISDGHNDKIQAVVDTGVV--PRLVELLDSEETTILT-AALRTVGNIATGNDHQTDCVIQA--GGLQKMK----------- 334 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g~~--~~Lv~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~l~~~--g~l~~L~----------- 334 (440)
|+.....+ ..+.+...+ ..+..+ .+.+..++. -.+.+|.|.|.....+-. +++. .+++.|.
T Consensus 159 ls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 159 LSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred Hhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCH
Confidence 88766554 333333322 223333 334444554 467888888776553333 3321 1222221
Q ss_pred ----------HHhc-----CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc-CCcHH
Q psy9169 335 ----------KLLS-----SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQH-HENET 398 (440)
Q Consensus 335 ----------~ll~-----~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~ 398 (440)
+++. .+++.|++.-.-+|.-+|+.... +..++.-|+-..+..+-. .++++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G--------------Re~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG--------------REVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh--------------HHHHHhcCchHHHHHHhcCCCcHH
Confidence 3332 23678888888888888875443 677888888887777633 56889
Q ss_pred HHHHHHHHHHhhCCCCc
Q psy9169 399 VYQKCYKIISMAFNDSA 415 (440)
Q Consensus 399 v~~~a~~il~~~~~~~~ 415 (440)
+.+.+.++...+..+++
T Consensus 302 ~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 302 IREACEQVVQMLVRLEP 318 (353)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999888888876444
No 62
>KOG0213|consensus
Probab=98.64 E-value=2e-06 Score=85.09 Aligned_cols=318 Identities=15% Similarity=0.136 Sum_probs=190.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.+..++.-+.++.+..+...+..+.++++.-....++.-.+.-.+..++..+. +....+......++.+--.+ ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k 794 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK 794 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence 46667777888888888888888888776544333444444445555555552 23333444555555443322 001
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
. .-.-++..+++.|++..+.++.+|+..++.|+.--..+. ..+-..|. .|...|.... ++++-.++.++..++
T Consensus 795 p--ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 795 P--YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIV 869 (1172)
T ss_pred c--chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHH
Confidence 1 112356778899999999999999999999983211111 11112222 2445554444 778777777777666
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
..-.-.....-..+++|.|..+|.+....++.+++..++.++...++.+..--=..+.--|+++|.+.+.+++.+|..++
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44311122223578999999999999999999999999999988776532211124566788889889999999999999
Q ss_pred HHhhc--CChHHHHHHH-----------------------HcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 311 GNIAT--GNDHQTDCVI-----------------------QAGG---LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 311 ~nl~~--~~~~~~~~l~-----------------------~~g~---l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
|.|+. |..+....++ -+|- +|.|++=...++..++.-...+++.+.....+.
T Consensus 950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH
Confidence 98874 2222111111 1232 333333333345566666666666655321111
Q ss_pred HHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 363 ~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
- ..|... ..+.|++-+...+.--++-|.++|.++.-+
T Consensus 1030 s---------kdYiya-----v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1030 S---------KDYIYA-----VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred h---------hhHHHH-----hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 0 001111 245566666677777777788887776443
No 63
>KOG1517|consensus
Probab=98.60 E-value=2.7e-06 Score=87.08 Aligned_cols=254 Identities=13% Similarity=0.153 Sum_probs=191.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+.+|.+++.|-|+ -=++.|+..|.+.+.-.+ ..+..-..-|+.|.++++|+++..+++---+.+.+.|-.-++.+..
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 4455555555543 234567777777765443 4566667789999999999999999999999999998777788888
Q ss_pred HHHhcCCHHHHHHhhCC-CC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 154 TVINANAIPKFLQLLSS-PH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~-~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
.+++.++-..++..|.. +. ++=+..|+.+|+.|..+-+-.+...++.+.+...+..+..+..+-++..+|-||+.|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 89999999999999987 33 5888999999999998878888888899999988888887544677888999999998
Q ss_pred hCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhhHHHH------------HhcCCh---HH
Q psy9169 231 RNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDG----HNDKIQAV------------VDTGVV---PR 290 (440)
Q Consensus 231 ~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~----~~~~~~~l------------~~~g~~---~~ 290 (440)
.+.+. .... ....+...|+.+|.++-++++.+|..+|+.+..+ .++....+ ++.-+. -.
T Consensus 629 ~d~~~-Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 629 EDYDE-ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhcch-hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 87633 2332 3356788899999999999999999999999875 23222222 222222 25
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHH
Q psy9169 291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 331 (440)
Q Consensus 291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~ 331 (440)
++.+++..++-++.+..-+|..++.+...+...+.-....+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 66777888889999999999999988776665554433333
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.59 E-value=4.7e-06 Score=80.90 Aligned_cols=264 Identities=15% Similarity=0.169 Sum_probs=174.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKER-HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
.+.+..++..|++..+.++..|+.....+..--+ ......+...|.| |.+.|....|++.-..+.++..|.+...-.
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4567788899999999999999876655432111 1123445555543 777888888988877677666665421110
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
...---.|++|.|...|++.+.++....+..++.||..+|++ |+.+. +--.|++.|.+.. .+++++|..++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~n-KeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWN-KEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence 001112489999999999999999999999999999877764 34332 3334666666666 8999999999999
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~ 308 (440)
+++.-.| ..++..|..-|...+-..+....-+|+-.+..... -.++|.|+.=-..++..|+.-.++
T Consensus 757 Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 757 ISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred HHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence 9976533 34566666666655544444444444433322111 134677766667788889988888
Q ss_pred HHHHhhcCChHH-HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 309 TVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 309 ~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+++.+...-.+. .+.+ .-+.|.|-+.|.+.++.-+..|+-.+.+|+-+
T Consensus 823 am~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 823 AMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 888765422211 1222 23678888888888888888888888888754
No 65
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=4.3e-06 Score=79.96 Aligned_cols=233 Identities=12% Similarity=0.029 Sum_probs=173.7
Q ss_pred HHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC
Q psy9169 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT 256 (440)
Q Consensus 177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 256 (440)
..++.+|-.++..-...|.-+....+.++|+++|.+++ ..+.-.++..+.|+.-.-.+-.......+++..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34445555666665667788888899999999998865 55555666677776655445555667789999999999998
Q ss_pred CHHHHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH---HHHHHHHcC----
Q psy9169 257 DVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH---QTDCVIQAG---- 328 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~l~~~g---- 328 (440)
|..++....|.+..+..+..+.. -.++..-.+..++.+..++...|+..++..+.|+...+.. ..+.++...
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 99999999999999997665332 2344455589999999999999999999999999874322 223222221
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------------------
Q psy9169 329 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------------- 368 (440)
Q Consensus 329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------------------------------- 368 (440)
+...|++.+...+|-...+.|+.|.++++.+.+..+.+++
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 4566777777778877777899999999876554444444
Q ss_pred -------------------------------------------cC---------cchHHHHHHHHcCcHHHHHHHhcCCc
Q psy9169 369 -------------------------------------------EG---------ELNQMALLVEESGGLEKLEALQHHEN 396 (440)
Q Consensus 369 -------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L~~~~~ 396 (440)
.+ ....-+..+.+.|.-+.+..++.+++
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 00 02245778889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy9169 397 ETVYQKCYKIISMA 410 (440)
Q Consensus 397 ~~v~~~a~~il~~~ 410 (440)
+.|++++-.+|..+
T Consensus 726 l~vrek~~taL~~l 739 (743)
T COG5369 726 LIVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 66
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.55 E-value=1.8e-07 Score=59.03 Aligned_cols=41 Identities=29% Similarity=0.644 Sum_probs=38.1
Q ss_pred ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
++++++.+++.|+++.|+++|.++++.++++|+|+|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35788899999999999999999999999999999999974
No 67
>KOG4413|consensus
Probab=98.51 E-value=9e-05 Score=67.04 Aligned_cols=329 Identities=11% Similarity=0.152 Sum_probs=213.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CC--cHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKER-HP--PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~--~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.+.|-..|..+|..+...++..+..++.... +. .+..+++.|+++.++.++..++.++-..|...+..|+.. +...
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHH
Confidence 4566677778899999999999888875432 11 145667899999999999888999999999999999865 6666
Q ss_pred HHHHhcCCHHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKF--LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
..+.++.....+ ..+-...+.-+|...+..+..|.+-++.....+..+|.+..|..-++...+.-++.+++.....|.
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 777776665543 333333445567777888888888888888888899999999998887666778888888888888
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChh---hHHHHHhc--CChHHHHHhccCCChhHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHND---KIQAVVDT--GVVPRLVELLDSEETTIL 303 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~---~~~~l~~~--g~~~~Lv~lL~~~~~~v~ 303 (440)
... ...++....+++..+..++.. ++|--.-.++...+.+-....- .-+.+.+. -.++...+.+...++..+
T Consensus 243 ete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 243 ETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 765 455666677888888888864 3443333344444433321110 00111111 124444556667888999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCC--HHHHH-HHhcCCChhHHHHHHHHHHHHhcC---ChHHHHHHhhcCcchHHHH
Q psy9169 304 TAALRTVGNIATGNDHQTDCVIQAGG--LQKMK-KLLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGELNQMAL 377 (440)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~l~~~g~--l~~L~-~ll~~~~~~i~~~a~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~ 377 (440)
..|+.++|-+-+.. +..+.+...|- ...++ ...+.....-+..+..+|.+|+.- .++++ .+-.....++.
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi---tDgkaeerlrc 397 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI---TDGKAEERLRC 397 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc---cccHHHHHHHH
Confidence 99999999875544 46666666552 33333 333333334566788889998853 33332 11001122333
Q ss_pred HHHHc-------CcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 378 LVEES-------GGLEKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 378 ~l~~~-------g~l~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
.+.+. .-++.....++.+.++++-.+++.+...
T Consensus 398 lifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi 437 (524)
T KOG4413|consen 398 LIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI 437 (524)
T ss_pred HHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 33222 2234445677788899988887655443
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.50 E-value=8.4e-05 Score=71.96 Aligned_cols=211 Identities=14% Similarity=0.042 Sum_probs=135.7
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 75 TVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 75 ~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.++.++..|. .++..+...++..+. .... + .++..|+..|.+.++.++..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~~-~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQED-A--------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccCC-h--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 4667777774 555666665555543 2222 1 137888888888888888888888887643
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
....+.|+.+|.+.++.++..++.+++..-. ...+.+..+|++.+ ..++..++.+|..+....
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHED-ALVRAAALRALGELPRRL 178 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCC-HHHHHHHHHHHHhhcccc
Confidence 2567788888888888888888877776322 23456777777555 788888888888877543
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
.+|.|...+.+.++.++..+++++..+-. +. .++.+..+...+.......+..+++..
T Consensus 179 -----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 179 -----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred -----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 45667777888888999988888876643 21 133444433333333333333333332
Q ss_pred hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+.+ .+++.|..++..+. ++..++++++.+.
T Consensus 237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC
Confidence 222 34566777776543 7777777777663
No 69
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.45 E-value=3.6e-05 Score=74.39 Aligned_cols=262 Identities=11% Similarity=0.059 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhC----CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCH
Q psy9169 86 SNPKMRMIATRSARKMLSKERHPPIDELIEAG----VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 161 (440)
Q Consensus 86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g----~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i 161 (440)
.+..+++.|+.+|.+-+-.- ...+...+ ++...++....++.++|..|..||..|..-........++.-..
T Consensus 190 t~~avRLaaL~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred chHHHHHHHHHHHHHHHHHH----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776522110 01111111 23344455577889999999999999987767777777888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH----------------HhcCChHHHHhhhCCCC------cHHHH
Q psy9169 162 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL----------------LGLGTMPQILALVQPNT------PTTFL 219 (440)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i----------------~~~g~i~~L~~ll~~~~------~~~~~ 219 (440)
....+.+++++.++..+++...+.+|....+..-.. ....++|.|+++|.... +=..-
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 888999999999999999998888884322111000 02337899999997522 11233
Q ss_pred HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC
Q psy9169 220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE 299 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~ 299 (440)
..+..||--++..... .+..+++..+-+-+.+++..-+..+..+++.+..++.+..-.-+=..++|.+...+.++.
T Consensus 346 maA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 346 MAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred hhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 4444444444433311 234456666667778888889999999999999887754443344677889999888888
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhcC
Q psy9169 300 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~---~~~~~i~~~a~~~L~nl~~~ 358 (440)
..++..+.||+|.|+..-+. .+-..|-++..+.... ...|.+...++|+.-|++.+
T Consensus 422 l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred eehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 88999999999999754322 1222333333332221 12467888999999999865
No 70
>KOG2973|consensus
Probab=98.43 E-value=0.00012 Score=65.68 Aligned_cols=269 Identities=16% Similarity=0.190 Sum_probs=169.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
...++.++++.+|.++..|+..+..+... . .+.+. +.-.++.+.+++....+ -..|+.+|.|++.. ...++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~---~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G---LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK 77 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-c---hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence 46789999999999999999888877543 1 12222 23568888899866655 67899999999965 66677
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCCCc-HHHHHHHHHHH
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTP-TTFLRNIVWAI 226 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~~~-~~~~~~a~~~L 226 (440)
.+++. .+..++..+.++...+...++..|.|++.+.......... .|.+.........+.+ ..-....+..+
T Consensus 78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 77766 8888999999887788889999999999886665544432 3444444444444332 23345566777
Q ss_pred HhhhhCCCCCCCHHHHhhHH--HHHHHhhcCCCHHHH-HHHHHHHHHhccCChhhHHHHHhc--CC--------------
Q psy9169 227 SNLCRNKNPAPDFEKIKICL--PLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDT--GV-------------- 287 (440)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~--g~-------------- 287 (440)
.||++.. ...........+ ..+..+-. .+..++ ...+++|.|.|-..... ..+++. .+
T Consensus 157 ~nls~~~-~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 157 ANLSQFE-AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHhhhh-hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence 7887765 333333222222 22333333 344443 34566666666443322 122211 11
Q ss_pred -------hHHHHHhcc-----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 288 -------VPRLVELLD-----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 288 -------~~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
+|.=+++|- .+++.++..-+.+|--||+... .++.+.+.|+.+.+-.+=......-..++|.-+.++
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222224443 2467799988999988887544 677888888888887776655433344555555554
Q ss_pred h
Q psy9169 356 T 356 (440)
Q Consensus 356 ~ 356 (440)
.
T Consensus 313 L 313 (353)
T KOG2973|consen 313 L 313 (353)
T ss_pred H
Confidence 4
No 71
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.42 E-value=5.3e-07 Score=56.85 Aligned_cols=41 Identities=41% Similarity=0.791 Sum_probs=38.2
Q ss_pred CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188 (440)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 188 (440)
+++++..+++.|++|.|+.+|++++.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999973
No 72
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.42 E-value=6.5e-05 Score=72.72 Aligned_cols=211 Identities=13% Similarity=0.044 Sum_probs=153.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..++..|.+.++.++..++..|..+ +. .+..+.|+.+|.+.++.++..++.++....
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------- 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----GG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHR--------- 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc---------
Confidence 388999999999999999999998754 11 146788999999999999998887777632
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
....+.+..+|+++++.++..|+.+|+.+... ..++.|...+.+.+ +.++..+++++..+...
T Consensus 146 ---~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~-~~VR~aA~~al~~lG~~-- 208 (410)
T TIGR02270 146 ---HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSD-PEVRFAALEAGLLAGSR-- 208 (410)
T ss_pred ---cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCC-HHHHHHHHHHHHHcCCH--
Confidence 23567899999999999999999999998643 34666777766665 89999999999766431
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
..++.+..+...........+..++... ..+ .+++.|..++.++. ++..++.++|.+-
T Consensus 209 ---------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 209 ---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred ---------hHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC
Confidence 2344555544444433333333333322 111 45888999998764 8999999999753
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
++ ..++.|+..+... .++..|.++++.|+.-
T Consensus 267 --~p---------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 267 --DV---------EAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred --Cc---------chHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 22 4678888888754 3999999999999853
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.41 E-value=0.0001 Score=70.47 Aligned_cols=241 Identities=20% Similarity=0.274 Sum_probs=167.5
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
..++.++.++.+.++.++..+++.++.+... -+++.+..++.+.++.++..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------
Confidence 4688889999888999999999998877632 5789999999999999999999999887533
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH------------HHHHHH
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------------ETLSDI 264 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~------------~i~~~a 264 (440)
..++.|+.++..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 257889999886555899999999999877543 35566666665442 344444
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169 265 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 344 (440)
Q Consensus 265 ~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i 344 (440)
..+++.+-. ...++.+...+.+....++..|..+|+.+.... ..+.+.+...+.+++..+
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 444444432 234788999999998899999999999987655 245678889999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhh----cCcchHHHHHHHH-----cCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 345 VKEAAWTISNITAGNSRQIDHVIQ----EGELNQMALLVEE-----SGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~i~----~~~~~~~~~~l~~-----~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
+..++.+|+.+-... ....++. ............. ......+...+.+.+..+...+...+..+..
T Consensus 230 r~~~~~~l~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 230 RKAALLALGEIGDEE--AVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHhcccCcch--hHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 999999999885432 2222222 0000011111111 1113334445556666666666666666644
No 74
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.39 E-value=0.00021 Score=68.30 Aligned_cols=188 Identities=23% Similarity=0.326 Sum_probs=145.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.+++.+.+.+..++..+++.+..+-. .-+++.+..++.+.++.++..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence 468899999999999999999999764421 13689999999999999999999999887532
Q ss_pred HHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-----------HHHHHH
Q psy9169 154 TVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-----------TTFLRN 221 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-----------~~~~~~ 221 (440)
..++.|+.++. +++..++..+.++|+.+-... .+.+++..+.+... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 57888999999 588999999999999886442 36677777765441 123444
Q ss_pred HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169 222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 301 (440)
Q Consensus 222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~ 301 (440)
+...+..+... ..++.+..++.+.+..++..+..+++.+.... ..+.+.+...+.+++..
T Consensus 169 a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 169 AAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 44444443322 35778888999998899999999999998765 24468888999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy9169 302 ILTAALRTVGNIAT 315 (440)
Q Consensus 302 v~~~al~~L~nl~~ 315 (440)
++..++.+++.+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999998643
No 75
>KOG1062|consensus
Probab=98.38 E-value=0.0001 Score=74.14 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=38.7
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+..|-++|.+.+..++.-|+..|...+..++...+.- =..++++|++++..+++.|.-.+..|+..
T Consensus 315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 3344444444444455555555555554444333322 24477788888888888888888777753
No 76
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.38 E-value=0.00016 Score=71.41 Aligned_cols=264 Identities=15% Similarity=0.122 Sum_probs=178.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc----------cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH
Q psy9169 95 TRSARKMLSKERHPPIDELIEAGVVPICVELL----------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF 164 (440)
Q Consensus 95 ~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL----------~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L 164 (440)
+.+++ ++++++ ...+.+.....+..|..+- ...++.+..+|+.||+|+...++..++.+++.|..+.+
T Consensus 2 L~~LR-iLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLR-ILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHH-HHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 34444 445555 3455666555666666654 34577899999999999999999999999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhhCC---------C-------CcHHHHHHH
Q psy9169 165 LQLLSSP-----HLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALVQP---------N-------TPTTFLRNI 222 (440)
Q Consensus 165 ~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll~~---------~-------~~~~~~~~a 222 (440)
+..|+.. +.++.--....|.-++...+..+..++ +.+++..|...|.. . .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999986 677887888888888877777776666 44777777766541 1 235667888
Q ss_pred HHHHHhhhhCCCCCCC---HHHHhhHHHHHHHhh---cC--CCHHHHHHHHHHHHHhccCChhh-----------HHHHH
Q psy9169 223 VWAISNLCRNKNPAPD---FEKIKICLPLLNQLI---HT--TDVETLSDICWALSYISDGHNDK-----------IQAVV 283 (440)
Q Consensus 223 ~~~L~~l~~~~~~~~~---~~~~~~~~~~L~~ll---~~--~d~~i~~~a~~~L~~l~~~~~~~-----------~~~l~ 283 (440)
+.++.|+......... ......+++.+..++ .. .-......+..+|.++-...... .....
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8899999876533222 223345555555552 11 12356777777777763211110 00012
Q ss_pred hcCChHHHHHhccC-----C---ChhHHHHHHHHHHHhhcCChHHHHHHHH----------------cCCHHHHHHHhcC
Q psy9169 284 DTGVVPRLVELLDS-----E---ETTILTAALRTVGNIATGNDHQTDCVIQ----------------AGGLQKMKKLLSS 339 (440)
Q Consensus 284 ~~g~~~~Lv~lL~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~l~~----------------~g~l~~L~~ll~~ 339 (440)
+..++..|+.+|.. . -.+...+.+.+|.+++..+...++.+.. ..+-..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 23456777777642 1 1257788899999999887665555542 2477889999999
Q ss_pred CChhHHHHHHHHHHHHhcCCh
Q psy9169 340 SRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 340 ~~~~i~~~a~~~L~nl~~~~~ 360 (440)
+.+.++..++-.|..+|..+.
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhH
Confidence 988899999988888886554
No 77
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.36 E-value=6.8e-05 Score=71.75 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=193.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.+.+...+-+++.+++..|.+.+|.++... .....+.+.++--.++.-| ...+..=+.+|+..+..+..-... .
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~- 102 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-P- 102 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-c-
Confidence 445554555566999999999999887644 3567788878766777777 334455678899888877654211 1
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
..+..|++..++.+..+++..++..|+.+|..++-.+| +.+...|++..|++.+.++. .++...++.++..+...+
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSP 178 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCc
Confidence 12355889999999999999999999999999997766 45788999999999998755 458888999999998776
Q ss_pred CCCCCHH----HHhhHHHHHHHhh---cCCCH--HHHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccCCChhHH
Q psy9169 234 NPAPDFE----KIKICLPLLNQLI---HTTDV--ETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSEETTIL 303 (440)
Q Consensus 234 ~~~~~~~----~~~~~~~~L~~ll---~~~d~--~i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~~~~v~ 303 (440)
.. .... ....++.++.+.- ..++. +....+..++..+-..=+.....-.+. ..+..|+..|..++++++
T Consensus 179 ~t-R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir 257 (371)
T PF14664_consen 179 RT-RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIR 257 (371)
T ss_pred ch-hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHH
Confidence 32 2221 1233333333331 11222 355566666666554333222211122 467888888888888888
Q ss_pred HHHHHHHHHhhcCC-hHHHHHH------HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHH
Q psy9169 304 TAALRTVGNIATGN-DHQTDCV------IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMA 376 (440)
Q Consensus 304 ~~al~~L~nl~~~~-~~~~~~l------~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~ 376 (440)
...+..+..+..-. +...... ...|-..--.++.... .+....+-.-......-++..+ .-+.
T Consensus 258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~-----~e~~~~~~~~~~~~~~l~~~y~-----aLll 327 (371)
T PF14664_consen 258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGF-----AEAKSILPHRSSKRPNLVNHYL-----ALLL 327 (371)
T ss_pred HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccc-----cccccccCccccccccHHHHHH-----HHHH
Confidence 88888777765421 1111111 0111100000000000 0000000000000111111111 1235
Q ss_pred HHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhC
Q psy9169 377 LLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAF 411 (440)
Q Consensus 377 ~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~ 411 (440)
..+.++|.++.|..+.... ++.+..+|.-+|..++
T Consensus 328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 6788999999999988877 8999999999988764
No 78
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=6.4e-06 Score=78.83 Aligned_cols=243 Identities=12% Similarity=0.161 Sum_probs=173.7
Q ss_pred HHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 191 (440)
Q Consensus 112 ~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~ 191 (440)
-+.+..+...|+++|..++..+..-+...++|....-+..+..++..|++..|++++.+.+..++....|++..+..+..
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 34455788999999987777777888899999988878888999999999999999999999999999999999986544
Q ss_pred h-hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC---CCCHHH----HhhHHHHHHHhhcCCCHHHHHH
Q psy9169 192 R-ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDFEK----IKICLPLLNQLIHTTDVETLSD 263 (440)
Q Consensus 192 ~-~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~----~~~~~~~L~~ll~~~d~~i~~~ 263 (440)
. .+-..+..-++..++.+...+. -.++..+...|.|+..+... ..++.. ..-++..+++.+...+|-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 3 3445667778899999987766 78999999999998864311 111111 1225666777777888877778
Q ss_pred HHHHHHHhccCChhhHHHHHhc-CChHHHHHhcc----C-----------------------------------------
Q psy9169 264 ICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD----S----------------------------------------- 297 (440)
Q Consensus 264 a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~----~----------------------------------------- 297 (440)
.|+.|.+++..+++..+.+... .++..+..+|. .
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D 664 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLD 664 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCcc
Confidence 8999999887776554444322 22222222210 0
Q ss_pred --------CChhHHHHHHHHHHHhhcC---C------hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 298 --------EETTILTAALRTVGNIATG---N------DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 298 --------~~~~v~~~al~~L~nl~~~---~------~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
++.+.-.+..|.+.|+... . -+.++.+.+.|+-+++..+..+.++.+++.+--+|.|+
T Consensus 665 ~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 665 NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 1123445556666665431 1 14556677888888888888888888998888888876
No 79
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.35 E-value=4.9e-05 Score=68.40 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=157.8
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHH-HhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCC
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTV-INANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL-GLGT 202 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i-~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~ 202 (440)
+.-++-.+.-|+.+|.++... ++.|..+ .+.-+-..++.++++. ..+++.+.+.+++-+... +.+.+.+- -...
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dl 236 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 445566788899999999866 6666654 3445666788888763 367888888888888766 44432222 2346
Q ss_pred hHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC---HHHHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHhccCC--
Q psy9169 203 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIKICLPLLNQLIH--TTDVETLSDICWALSYISDGH-- 275 (440)
Q Consensus 203 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~~L~~ll~--~~d~~i~~~a~~~L~~l~~~~-- 275 (440)
+..|+.+++....+.+.+-++..+.|++... |..- ......+.|..--++. -.|++++.+.-..=+.|....
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 7778888887777899999999999999843 2211 1122334444433332 256666555433332222111
Q ss_pred -------------------h---------hhHHHHHhc--CChHHHHHhccCCChh-HHHHHHHHHHHhhcCChHHHHHH
Q psy9169 276 -------------------N---------DKIQAVVDT--GVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCV 324 (440)
Q Consensus 276 -------------------~---------~~~~~l~~~--g~~~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~l 324 (440)
+ ..+..+.+. .++..|.++++..++. ....||.-|+.++...|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 0 122333332 5788899999887765 56678999999999999999999
Q ss_pred HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 325 ~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
...|+-..+++++.+++++++-+|..++.-+..
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999887653
No 80
>KOG1789|consensus
Probab=98.34 E-value=0.00032 Score=72.41 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCc---HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH
Q psy9169 89 KMRMIATRSARKMLSKERHPP---IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF 164 (440)
Q Consensus 89 ~~~~~a~~~l~~lls~~~~~~---~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L 164 (440)
+-...++.+++|+++..++-. -.+..--|..+.+..+| ...++.++..|+.++..+++. .++...+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence 345668999999988665210 11122237788888888 778899999999999887754 7888899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHH
Q psy9169 165 LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKI 242 (440)
Q Consensus 165 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~ 242 (440)
+.+|.+. +..++.++.+|..++.. +.......++|++..+..++........+..++..+..+...+-..+. +...
T Consensus 1819 L~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 9999764 67899999999999987 555566778999999999988777778888888877777654322111 1111
Q ss_pred hhHH------------HHHHHhhcC--CCH--------------------------------------------------
Q psy9169 243 KICL------------PLLNQLIHT--TDV-------------------------------------------------- 258 (440)
Q Consensus 243 ~~~~------------~~L~~ll~~--~d~-------------------------------------------------- 258 (440)
.++ ...++++.. +++
T Consensus 1897 -kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1897 -KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred -HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 111 111111111 111
Q ss_pred --------------------------------------------HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169 259 --------------------------------------------ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 294 (440)
Q Consensus 259 --------------------------------------------~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l 294 (440)
....-...++..|....+...+.+-..|-+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 111112222333333444444444456899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+.+.+..+-..|++.|-.++.+. ...+.+.....+..++..|... +....-||-+|-.+...
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r 2117 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKR 2117 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 88777777788999999987654 3667777777777788777653 34455788888887753
No 81
>KOG1061|consensus
Probab=98.28 E-value=4.8e-05 Score=76.24 Aligned_cols=274 Identities=17% Similarity=0.208 Sum_probs=173.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
++.++....+.++..+..|++.+..+ . ...++ .-+..++...+++.++.+|..++-+..++-..+ .+.+
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l---~----v~~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~ 156 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCL---R----VDKIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLV 156 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeE---e----ehHHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhc
Confidence 34444444455555555555544321 0 11111 124677888889999999999999999987553 4567
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169 156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 235 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 235 (440)
.+.|.++.|..++.++++.|...|+.+|..|....+..--..+....+..++..+...+ ...-+..|-.++... +
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~----EW~qi~IL~~l~~y~-p 231 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT----EWGQIFILDCLAEYV-P 231 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh----hhhHHHHHHHHHhcC-C
Confidence 78899999999999999999999999999999665432122222233444444443322 333444555666554 3
Q ss_pred CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
... .....++..+...|.+.++.+...+..++.++...... ....+-..+-++|+.++.... +++..|++-+.-+..
T Consensus 232 ~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 232 KDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred CCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 333 44566788888888999999999999999888865554 233444566788888888776 777777777666655
Q ss_pred CChHHHH--------------------------HHHHcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhcCC---hHHH
Q psy9169 316 GNDHQTD--------------------------CVIQAGG---LQKMKKLLSSSRVNIVKEAAWTISNITAGN---SRQI 363 (440)
Q Consensus 316 ~~~~~~~--------------------------~l~~~g~---l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~---~~~~ 363 (440)
..+.... ...++++ +.-+...-..-+.+..+++.+++++++..- ...+
T Consensus 309 ~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv 388 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCV 388 (734)
T ss_pred hChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhH
Confidence 4332111 0111222 222333333346788899999999998642 2344
Q ss_pred HHHhh
Q psy9169 364 DHVIQ 368 (440)
Q Consensus 364 ~~~i~ 368 (440)
..+++
T Consensus 389 ~~lLe 393 (734)
T KOG1061|consen 389 SILLE 393 (734)
T ss_pred HHHHH
Confidence 44444
No 82
>KOG1059|consensus
Probab=98.28 E-value=0.0002 Score=71.22 Aligned_cols=227 Identities=13% Similarity=0.167 Sum_probs=169.9
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
++-+-++.+|.+.-|-+|..|+.+|..+....|+..+ ..+|.|..-|.++++.|+..|+.+++.||..+|...
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-- 216 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-- 216 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence 3456678888889999999999999999876665433 568999999999999999999999999998877641
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH-HHHHHHHHHHH--Hhcc
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALS--YISD 273 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~-~i~~~a~~~L~--~l~~ 273 (440)
...-|.+..+|..+++.=++...+..+++|+.-. ......++|.|..+++++.. .+.-.+..++. +|+.
T Consensus 217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-----PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-----PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccC-----chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 2356788888887776667777777777777543 23457789999999987653 45555555442 4444
Q ss_pred CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 353 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~ 353 (440)
+.++.... + .-++..|-.++.+.++.++.-++.+++.|...++..++.- -+.++++|.+.++.||-.|.-.|.
T Consensus 289 g~~d~~as-i-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 289 GMSDHSAS-I-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred CCCCcHHH-H-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence 43332111 1 1247888888999999999999999999998777655533 467889999999999999999988
Q ss_pred HHhcCChHHHHHHh
Q psy9169 354 NITAGNSRQIDHVI 367 (440)
Q Consensus 354 nl~~~~~~~~~~~i 367 (440)
-|.. .+.+..++
T Consensus 362 gmVs--kkNl~eIV 373 (877)
T KOG1059|consen 362 GMVS--KKNLMEIV 373 (877)
T ss_pred HHhh--hhhHHHHH
Confidence 8874 33444444
No 83
>KOG1062|consensus
Probab=98.27 E-value=0.0014 Score=66.30 Aligned_cols=300 Identities=17% Similarity=0.160 Sum_probs=156.3
Q ss_pred hhhHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHhhhh--HHH-Hhhccccc-------cccchhhhccccCCCCCCc
Q psy9169 5 VAAIDRKASFKN---AGKSFDEMRRKRCEMNVELRKAHKD--DQL-FKRRNIDQ-------LDEIEEENVTVIEPTCMSP 71 (440)
Q Consensus 5 ~~~~~r~~~~k~---~~~~~~~~r~~R~~~~~~lRk~kr~--~~l-~krR~~~~-------~~~~~~~~~~~~~~~~~~~ 71 (440)
|-+..|++.+=. ..++..|-|+-=......||+.-|+ .-. ..||++.- ..++
T Consensus 4 ~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa--------------- 68 (866)
T KOG1062|consen 4 FAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA--------------- 68 (866)
T ss_pred CCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------------
Confidence 344455555532 1245556566555667788988888 433 33444421 1111
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
..+--.-++++.|++.....-+--...-++ .+. +..-.+ +...+..=|++++.-++-.|+.+|+++++ ++.
T Consensus 69 -hFGqieclKLias~~f~dKRiGYLaamLlL-dE~-qdvllL----ltNslknDL~s~nq~vVglAL~alg~i~s--~Em 139 (866)
T KOG1062|consen 69 -HFGQIECLKLIASDNFLDKRIGYLAAMLLL-DER-QDLLLL----LTNSLKNDLNSSNQYVVGLALCALGNICS--PEM 139 (866)
T ss_pred -cchhhHHHHHhcCCCchHHHHHHHHHHHHh-ccc-hHHHHH----HHHHHHhhccCCCeeehHHHHHHhhccCC--HHH
Confidence 122223456667776554444443333233 222 111111 24455666678888899999999999985 444
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
.+ ...|-+.++|++.++.++..|+.|...+....|..-.. +++....+|.+.+ ..+....+..+..+|.
T Consensus 140 ar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 140 AR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCK 208 (866)
T ss_pred hH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHh
Confidence 33 45788889999999999999999999988776655332 2344444444333 3444444444444444
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhc---------------CCCHHHHHHHHHHHHHhccCChhhHHHHHh------------
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIH---------------TTDVETLSDICWALSYISDGHNDKIQAVVD------------ 284 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~---------------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~------------ 284 (440)
.... .......+++.++..|+ -+||-++..+++.|.-|-.++.+..+.+-+
T Consensus 209 ~~~~--~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 209 ISPD--ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred cCHH--HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 3211 11112223333333321 124455555555555555544433222210
Q ss_pred --------cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHH
Q psy9169 285 --------TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 347 (440)
Q Consensus 285 --------~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~ 347 (440)
..++..+..+ .++..++..|+.+||.+..+.+.+++++ ++..|..++......+++.
T Consensus 287 kN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRH 351 (866)
T ss_pred ccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHH
Confidence 0111122221 1334566667777777766666555543 4555666665544444443
No 84
>KOG1061|consensus
Probab=98.26 E-value=0.0001 Score=73.92 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=179.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.-++.+++.....|.+.....-..+.+.....+. . ..++++.++.=..+++|.+|..|++.++.+..+ ....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~---~---a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e 120 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD---L---AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE 120 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCch---H---HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH
Confidence 4578999999999988888888888888654431 1 235688888888999999999999998887643 2222
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
-+...+...+++.++.++..++.+..++-..++ +.+...|.++.|-.++.+++ +.+..+|+.+|..+....
T Consensus 121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESH 191 (734)
T ss_pred -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999886643 56778899999999998555 899999999999999776
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
............+..++..+...++.-+...+.++..-...++.-.+ .++.++...|.|.+..+...+...+-++
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 33333334455666666666666666666677766666654442222 3477888888888888888888888877
Q ss_pred hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q psy9169 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350 (440)
Q Consensus 314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~ 350 (440)
+...+.....+. ..+-+.|+.++.+.. .++.-|..
T Consensus 267 ~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLr 301 (734)
T KOG1061|consen 267 VKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALR 301 (734)
T ss_pred HHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHh
Confidence 654443222222 245566666666544 44444333
No 85
>KOG1824|consensus
Probab=98.26 E-value=0.00016 Score=73.90 Aligned_cols=274 Identities=14% Similarity=0.172 Sum_probs=165.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169 78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN 157 (440)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~ 157 (440)
.|++.+.|+|.+.|+.|+.-|.+-+.... ...+.=-+..++..++++|.+.++++|..|+.||+-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le--- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE--- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH---
Confidence 78889999999999999998877665432 22233334568899999999999999999999999999654432211
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc----CChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhC
Q psy9169 158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL----GTMPQILALVQPN-TPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~----g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~ 232 (440)
..+..|+.-+-++....+..+.-.|.....+-+......... .+.+.+...+..+ +...++..++..+..+...
T Consensus 85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 234555555545545555444433332222212111111222 2444454444432 2234666666666544433
Q ss_pred CC-CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHH
Q psy9169 233 KN-PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTV 310 (440)
Q Consensus 233 ~~-~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L 310 (440)
-. --++ .-..++..+..-+.+....++..++.+|+.++..-+.. .-.+++..|++-|..+ ++.....-+.+|
T Consensus 164 ~g~ll~~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 164 FGTLLPN--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred hcccCcc--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 21 1122 23456666777778888899999999999998544322 1124567777777554 344455566777
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHh---cCCChhHHHHHHHHHHHHhcCChHHH
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLL---SSSRVNIVKEAAWTISNITAGNSRQI 363 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~ 363 (440)
+.++.........-. ..++|.+.+.. +..+.++++....++.-+....+..+
T Consensus 238 ~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHL-DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHHhcchhhccc-chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh
Confidence 777753322111111 24678888888 55567889988888887776555443
No 86
>KOG4646|consensus
Probab=98.24 E-value=1.7e-05 Score=62.30 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=98.6
Q ss_pred CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
+.+..|+.-. ...+.+.+.+...-|.|.|-+ |-+-..+.+..++..++..|..++..+.+.++..|+|+|.+ +....
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 3455566555 677889999999999999965 77778889999999999999999999999999999999998 56668
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
.+.+.+++|.++..+.++. ..++..++.++..|+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCccc
Confidence 8999999999999988777 7788889999999997753
No 87
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.24 E-value=1e-05 Score=78.66 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=104.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
++..++++|+++.+.++.+|+...+.|+.--..+. ..+...|. .|..-|.... ++++-.++.++..+.....-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 57788999999999999999999998872211110 11222222 2333343333 7777766666666554321111
Q ss_pred CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
-..-..+++|.|..+|.+....+..+....++.++...++.+..--=..+.--|+..|.+.+.+++..|..++|-|+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 111257899999999999999999999999999998887653221112455678888999999999999999998874
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.21 E-value=4.4e-06 Score=62.70 Aligned_cols=87 Identities=26% Similarity=0.451 Sum_probs=72.6
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
||.|++.| .++++.+|..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68899999 99999999999999996531 1 459999999999999999999999998841
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
...++.|..++.++.+..++..++++|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2478999999998776777888888874
No 89
>KOG1060|consensus
Probab=98.18 E-value=0.00089 Score=67.38 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=137.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
-..|..+-+.|.++++.++..|++.+..+ .-+.+.-+ ++-.+-++..+..+.+|..|+.++..+-+-.++..
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSI----RVPMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 45677888888888888888777777543 11111111 12223334478889999999999999988777766
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+ +..+-.+|.+.++-|.-.|+.++-.+|.+. -+. -++-...|+++|..-+ .=-+..++..|..-|+.
T Consensus 179 ~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldL--IHknyrklC~ll~dvd-eWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 179 DQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDL--IHKNYRKLCRLLPDVD-EWGQVVLINMLTRYARH 247 (968)
T ss_pred HHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHH--hhHHHHHHHhhccchh-hhhHHHHHHHHHHHHHh
Confidence 644 456777888888899999999999988552 122 2334555555554322 11111222222222322
Q ss_pred CC----------------------------CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 233 KN----------------------------PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 233 ~~----------------------------~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
.= |...-....-++..+..+|.+.++.++.+++.++.+++.....
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------- 320 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------- 320 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------
Confidence 10 1011122344566777888899999999999999999965421
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGND 318 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~ 318 (440)
..+++.|+.+|.++. .++...+..|..++...+
T Consensus 321 ~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRP 353 (968)
T ss_pred HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcch
Confidence 245889999887653 567777777777765443
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.15 E-value=0.00025 Score=71.48 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=166.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHHHHHHhccC-------CChHHHHHHHHHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDD-------ENPNTQFEATWALTNI 144 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~~Lv~lL~~-------~~~~i~~~a~~~L~nl 144 (440)
..++..+.+|++.+.+.++.++..+.+++...+... .+.+.++=+.+.|-++|.+ +....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457888999999998888889999999876544211 2346777667888888854 2345677888999998
Q ss_pred hCCCcHHHH--HHHhcCCHHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH
Q psy9169 145 ASGTSEQTM--TVINANAIPKFLQLLSSPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 221 (440)
Q Consensus 145 a~~~~~~~~--~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~ 221 (440)
+.. ++... .++ +-||.|+..+.+... .+...|+.+|..++.. +..+..+++.|.++.|.+.+.++ ......
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~ 158 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ--SFQMEI 158 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC--cchHHH
Confidence 874 44432 333 679999999988776 9999999999999954 88889999999999999999873 456777
Q ss_pred HHHHHHhhhhCCCCC---CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh-HHHHHhcC----ChHHHHH
Q psy9169 222 IVWAISNLCRNKNPA---PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK-IQAVVDTG----VVPRLVE 293 (440)
Q Consensus 222 a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g----~~~~Lv~ 293 (440)
++.++.+++...... ........+++.+...+..........+|..|..+-...+.. ........ +...+..
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 888888877654211 122233456677777777666677888899998887655311 11112223 3444555
Q ss_pred hccCC-ChhHHHHHHHHHHHhhc
Q psy9169 294 LLDSE-ETTILTAALRTVGNIAT 315 (440)
Q Consensus 294 lL~~~-~~~v~~~al~~L~nl~~ 315 (440)
+|.+. .+.-+.+|+...+.+..
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH
Confidence 55543 45677777777776653
No 91
>KOG1242|consensus
Probab=98.12 E-value=0.002 Score=63.47 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=189.0
Q ss_pred CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
++..|++-+..+.+.+|.....+|.-+...... ....-..+.+.+++......-+.-+.+.++.+..+.. -..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 577888888889999999988888777543111 1112356778888887777778888888888876642 2445
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
...+++..|...+.+..+..-++.+..+.-..+..-. .........++|.+...+.+..+.++..+..+...+...-+.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 5678888888888766533333334444444444432 233345677888888888888889998888888777654432
Q ss_pred hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
..-. -++|.++.-+....+.....++..+|.++...+.+..... ..++|.+...|.+.++.+++.+..++-+++.
T Consensus 250 ~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 250 YAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred chhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2111 2355555555555677788999999999888877666444 4799999999999999999999999999986
Q ss_pred C-ChHHHHHHhh-----cCcch-HHHHHHHHc-----------CcHHHHHHHhc----CCcHHHHHHHHHHHHhhCCC
Q psy9169 358 G-NSRQIDHVIQ-----EGELN-QMALLVEES-----------GGLEKLEALQH----HENETVYQKCYKIISMAFND 413 (440)
Q Consensus 358 ~-~~~~~~~~i~-----~~~~~-~~~~~l~~~-----------g~l~~l~~L~~----~~~~~v~~~a~~il~~~~~~ 413 (440)
- ....|+.++. ++... .....+... -.+..+..+++ ..+..+.+++..|+.++..-
T Consensus 325 vidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 325 VIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred hhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 3 3333777665 11111 111111111 13444554444 44667889999998877553
No 92
>PF05536 Neurochondrin: Neurochondrin
Probab=98.12 E-value=0.00032 Score=70.78 Aligned_cols=235 Identities=12% Similarity=0.105 Sum_probs=163.8
Q ss_pred CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH---HHHHHhcCCHHHHHHhhCC-------CCHHHHHHHHHHHHHhh
Q psy9169 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ---TMTVINANAIPKFLQLLSS-------PHLNLAEQATWALGNIA 187 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~---~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~ 187 (440)
.+...+.+|+..+.+-++.++..++++...++.. ++.+.+.=+.+.|-++|++ +....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566777887777888999999999998776532 3357788788999999987 33678888999999999
Q ss_pred CCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHH
Q psy9169 188 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 267 (440)
Q Consensus 188 ~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~ 267 (440)
.+ |+....---.+-||.|+.++..+.+.++...+..+|..++..+ .........+.++.|.+.+.+ .+.....++.+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 85 4432211223569999999998885699999999999999665 566666778999999999877 55667777777
Q ss_pred HHHhccCChh-----hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH-----HHHHHHcCCHHHHHHHh
Q psy9169 268 LSYISDGHND-----KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-----TDCVIQAGGLQKMKKLL 337 (440)
Q Consensus 268 L~~l~~~~~~-----~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~l~~~g~l~~L~~ll 337 (440)
+.+++..... ..+.+ ..+++.+-..+.......+-.++..|+.+....+.. ...-+-..+...|..++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 7777654331 11111 144566666666666667888899999998766321 11112234566677777
Q ss_pred cCC-ChhHHHHHHHHHHHHhc
Q psy9169 338 SSS-RVNIVKEAAWTISNITA 357 (440)
Q Consensus 338 ~~~-~~~i~~~a~~~L~nl~~ 357 (440)
.+. .+.-|..+....+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 765 35556666666666653
No 93
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00027 Score=68.59 Aligned_cols=271 Identities=15% Similarity=0.124 Sum_probs=166.0
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHH-HhCCHH--HHHHhc-cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 77 PEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELI-EAGVVP--ICVELL-DDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 77 ~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~i~--~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
..++.....+. .....+++..+...+-... | +.++ .++++- .....+ ..++..+|..++.+|.+-.. ..
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv 209 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESEA-P--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FV 209 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhccC-H--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HH
Confidence 34444444333 4567778888887754333 3 3333 344332 233334 45667899999999988321 11
Q ss_pred HHHHHhc----CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 152 TMTVINA----NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 152 ~~~i~~~----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
+..+... -.+...+..-+.++.+++..+..||..|..-.-.+-....+.-......+.+++.. .++...+...-+
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWs 288 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWS 288 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHH
Confidence 1122111 23445566667788999999999999887432222233334434444555666655 666666666555
Q ss_pred hhhhCCCCC--------------CCH--HHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 228 NLCRNKNPA--------------PDF--EKIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 228 ~l~~~~~~~--------------~~~--~~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
.+|...... ..+ .....++|.|+.+|.. +|..+-..|..+|--.+....+ .+++
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~ 365 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR 365 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH
Confidence 666432110 011 1245689999999954 2334555555555555533222 2222
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
. ++..+-+-+.+++..-+..|.-++|.+..+..+....-+-..++|.+..++.++.-.++..++|+++.|+.+
T Consensus 366 p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 366 P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 2 445555557788888899999999999998876555555567899999999977778999999999999854
No 94
>KOG1824|consensus
Probab=98.09 E-value=0.00044 Score=70.79 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=150.9
Q ss_pred CCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q psy9169 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL 207 (440)
Q Consensus 128 ~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~ 207 (440)
..+..++.-|+..|+.+..+... .-..+.-..++..+.+++++++..|..+||+++.++-. ..+|-++
T Consensus 830 ~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil 897 (1233)
T KOG1824|consen 830 KSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFIL 897 (1233)
T ss_pred CCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHH
Confidence 34556778888888888654221 12235566888999999999999999999999964322 2477777
Q ss_pred hhhCCCC-cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q psy9169 208 ALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG 286 (440)
Q Consensus 208 ~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g 286 (440)
..+.++. ...++ +..|..+...............+...|.+-.....+..+.-...+|+.|+..+++.
T Consensus 898 ~qi~sqpk~QyLL---LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes-------- 966 (1233)
T KOG1824|consen 898 EQIESQPKRQYLL---LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES-------- 966 (1233)
T ss_pred HHHhcchHhHHHH---HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------
Confidence 7776543 12222 22222222221111111223344444555455566778888999999999888754
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
++|.|-..+.++.+..+..++.++.-.....+.-.+.++. ..+..++.++++++..+++.|..++...+.+.+..+.-+
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHH
Confidence 4899999999999989988888887777666655554444 467788899999999999999999999988888877777
Q ss_pred hh
Q psy9169 367 IQ 368 (440)
Q Consensus 367 i~ 368 (440)
+.
T Consensus 1046 lp 1047 (1233)
T KOG1824|consen 1046 LP 1047 (1233)
T ss_pred HH
Confidence 65
No 95
>KOG1240|consensus
Probab=98.08 E-value=0.00018 Score=75.36 Aligned_cols=267 Identities=17% Similarity=0.149 Sum_probs=169.5
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC---CcHH
Q psy9169 76 VPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG---TSEQ 151 (440)
Q Consensus 76 i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~---~~~~ 151 (440)
++.+...+++ ...+.++.|+..+..+...-. ++..=.-++|.++.++.++..++|..|+.+|+.+-.. -+..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4444444443 346778888888887643322 2333346899999999999999999999999988542 1122
Q ss_pred HHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH---H-------------------------HHhcCC
Q psy9169 152 TMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARD---L-------------------------LLGLGT 202 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~---~-------------------------i~~~g~ 202 (440)
-..+...=++|.|-.++.+.+ ..+|-.-+..|+.+|...-.+.. . -+..++
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 223444457788888888733 44554444555555421000000 0 000111
Q ss_pred hHHHHhhhCCCCcHHHHHHHHHHHHhhhhC--CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169 203 MPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280 (440)
Q Consensus 203 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~ 280 (440)
=.....++..+. +-+++..+..|.-||.- +... .--+++.|+.+|++.|..++..-...|..++-.-.-+
T Consensus 580 ~~~v~sLlsd~~-~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 580 EQMVSSLLSDSP-PIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred HHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 122223333333 55666666666666632 1111 1236788999999999999988888888776432211
Q ss_pred HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
-++.+++|.|.+-|.++.+.|...|+.++.-|+...--....+. .+++....+|-+++..||..++..|..++.
T Consensus 652 -s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 -SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 13456799999999999999999999999999875433333333 356777888899999999999999988775
No 96
>KOG4646|consensus
Probab=98.07 E-value=3.1e-05 Score=60.83 Aligned_cols=133 Identities=9% Similarity=0.072 Sum_probs=107.7
Q ss_pred CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280 (440)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~ 280 (440)
+.+..|+.-.....+.+.+..++.-|.|++.++ ..........++..++..|...|+.+...++..|+|+|..... ..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n-~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN-AK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH-HH
Confidence 346677777777777899999999999999876 3444455578899999999999999999999999999976654 48
Q ss_pred HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHH
Q psy9169 281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 335 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ 335 (440)
.+.+++.+|.++..++++...+...|+.++..++.+.-.....+...-++..+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 8899999999999999999889999999999999887766666665444444433
No 97
>KOG0212|consensus
Probab=98.07 E-value=0.00059 Score=66.14 Aligned_cols=236 Identities=14% Similarity=0.144 Sum_probs=158.1
Q ss_pred CCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhccCCChHHHHHHHHH----HHHH
Q psy9169 74 MTVPEMIEGMK----SSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELLDDENPNTQFEATWA----LTNI 144 (440)
Q Consensus 74 ~~i~~lv~~L~----s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL~~~~~~i~~~a~~~----L~nl 144 (440)
..++.++.+|+ ..++..+..-+..+.-+-+. |.++.+-- ..+++.|..+|.+++++++..+=.+ |..|
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 44555555554 66888998888888766432 33333321 4677888889999999999665554 4444
Q ss_pred hCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH---
Q psy9169 145 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN--- 221 (440)
Q Consensus 145 a~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~--- 221 (440)
.+. |... --...++.++.-+.++++.++..|+.-|..+..-.+.. -...-.|++..++.++.+.....+...
T Consensus 240 ~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 240 RSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred hcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 433 2211 12357899999999999999998887776666432221 222356777777777775553222222
Q ss_pred HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169 222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 301 (440)
Q Consensus 222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~ 301 (440)
.-..+..++.......+ .....++..+.+.+.++..+.+..++.-+..+-...+.. -......+.+.|+.-|.+++..
T Consensus 315 ~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhH
Confidence 22234445544322222 455778899999999999999999988887777665544 2233457899999999999999
Q ss_pred HHHHHHHHHHHhhcCChH
Q psy9169 302 ILTAALRTVGNIATGNDH 319 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~ 319 (440)
|...++..++++|.....
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999986543
No 98
>KOG1242|consensus
Probab=98.04 E-value=0.0035 Score=61.85 Aligned_cols=307 Identities=14% Similarity=0.147 Sum_probs=193.6
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
....++.+++.+..+++.+|.....++.-+.......... -+.+.+.+++......-+..+++.+..+..+..
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-- 166 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-- 166 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--
Confidence 3445777888888899999999999988775443322222 246677778877777888889999998887643
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHH-HHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHH
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQ-ATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAIS 227 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~-a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~ 227 (440)
...+.+.+.+..|...+.+.+...+.. +..+.-..+..-.. ..+-.+++.+-.++. +.. ..++..+..+..
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----~~EPyiv~~lp~il~~~~d~~-~~Vr~Aa~~a~k 241 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----PFEPYIVPILPSILTNFGDKI-NKVREAAVEAAK 241 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----CCCchHHhhHHHHHHHhhccc-hhhhHHHHHHHH
Confidence 456667789999999998866444332 22222222211000 112233444444444 333 667777777766
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
.+.+.-++ ..+..++|.++.-+..........++..++.++...+..... .-..++|.+.+.|.+..++++..+.
T Consensus 242 ai~~~~~~----~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 242 AIMRCLSA----YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHhcCc----chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHH
Confidence 66654322 234556777666665557788899999999999888766443 3468899999999999999999999
Q ss_pred HHHHHhhcC--ChHHHHHHH------------------------------HcCCHHHHHHHhc----CCChhHHHHHHHH
Q psy9169 308 RTVGNIATG--NDHQTDCVI------------------------------QAGGLQKMKKLLS----SSRVNIVKEAAWT 351 (440)
Q Consensus 308 ~~L~nl~~~--~~~~~~~l~------------------------------~~g~l~~L~~ll~----~~~~~i~~~a~~~ 351 (440)
.+|-+++.- +++ ++.++ +.-.+..++.++. ..+..+++.++.+
T Consensus 317 ~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred HHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 999888652 111 11111 1223344444443 3355677888888
Q ss_pred HHHHhcC--ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 352 ISNITAG--NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 352 L~nl~~~--~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
+.|+|.- .+..+. ..+.+ .++.+..-.....|+++.-|..+|...
T Consensus 396 idNm~~LveDp~~la------------pfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLA------------PFLPS--LLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred HHHHHHhhcCHHHHh------------hhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 8888753 232222 22221 145566656666888888888877444
No 99
>KOG4413|consensus
Probab=98.03 E-value=0.0017 Score=58.95 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=189.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHH--HHhccCCChHHHHHHHHHHHHHhCCCcH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPIC--VELLDDENPNTQFEATWALTNIASGTSE 150 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~L--v~lL~~~~~~i~~~a~~~L~nla~~~~~ 150 (440)
...++.++..+...|.++-..|...+..+.... .....+.++.....+ ..+-..-+.-.|......+..|.+-+++
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialfp--aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALFP--AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH--HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 345677888888888888888888888775332 235566666554433 2222344566788888999999999999
Q ss_pred HHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-HHHHHHHHHHHHh
Q psy9169 151 QTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-TTFLRNIVWAISN 228 (440)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-~~~~~~a~~~L~~ 228 (440)
....+-.+|.+..|..-|+. .+.-++..++.....++.. ...|+.+-+.|.|+.+.+++...++ +--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999987 5566778888888888854 4456778889999999999974332 2222223444444
Q ss_pred hhhCCC---CCCCHH--HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC--hHHHHHhccCCC-h
Q psy9169 229 LCRNKN---PAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV--VPRLVELLDSEE-T 300 (440)
Q Consensus 229 l~~~~~---~~~~~~--~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~--~~~Lv~lL~~~~-~ 300 (440)
+..... ..++.. ...-++.-..+++..+|+..+..|..+++.|..+.... +.+.+.|- ..+++.-..+.+ .
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa-dlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA-DLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh-HHHhccCChHHHHHHHHHhccccc
Confidence 433221 011111 11223444556778899999999999999998765543 66666652 344444333333 3
Q ss_pred hHHHHHHHHHHHhhcCC---hH----------HHHHHHHc-------CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169 301 TILTAALRTVGNIATGN---DH----------QTDCVIQA-------GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~---~~----------~~~~l~~~-------g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~ 360 (440)
.-+..++++|.+|+... ++ .+..+.++ .=+..+..+++.+.+.++..+..++..|++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW 442 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW 442 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH
Confidence 45678889999887521 11 11122221 335667788888889999999999999987665
Q ss_pred HH
Q psy9169 361 RQ 362 (440)
Q Consensus 361 ~~ 362 (440)
.+
T Consensus 443 al 444 (524)
T KOG4413|consen 443 AL 444 (524)
T ss_pred HH
Confidence 43
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.02 E-value=9.4e-05 Score=66.47 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=120.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKE-RHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN 159 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~-~~~~~~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g 159 (440)
-.+.+++.+..|+..++.++... .......++. ..+++.+...+.+....+...|+.++..++..-....... -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 35789999999999999998766 1122333332 2566778888877788899999999999986544333333 235
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC-CCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APD 238 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 238 (440)
++|.|+..+.+++..+++.|..+|..++...+..... .++.+...+.+. ++.++..++..+..+...-+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999999775411111 134444444444 488989888888887765431 111
Q ss_pred H---HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169 239 F---EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 281 (440)
Q Consensus 239 ~---~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~ 281 (440)
. .....+++.+..++.+.+++++..|-.++..+...-++....
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 1 124678999999999999999999999998887665554333
No 101
>KOG2734|consensus
Probab=98.02 E-value=0.0021 Score=60.71 Aligned_cols=227 Identities=11% Similarity=0.115 Sum_probs=158.8
Q ss_pred cHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC---------cHHHHHHHhcCCHHHHHHhhCCCCHHH----
Q psy9169 109 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT---------SEQTMTVINANAIPKFLQLLSSPHLNL---- 175 (440)
Q Consensus 109 ~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~---------~~~~~~i~~~g~i~~L~~lL~~~~~~v---- 175 (440)
-...+++.++++.|+++|.+.|.++....+..|..++..+ ......+++.++++.|++.+..-++.+
T Consensus 117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea 196 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA 196 (536)
T ss_pred HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence 3568899999999999999999999999999999987532 134567889999999999997644433
Q ss_pred --HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh
Q psy9169 176 --AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252 (440)
Q Consensus 176 --~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 252 (440)
...++..+-|+..-.+.+...+.+.|.+..|+.-+... .-..-...+...++-+..+.+........-.++..++.-
T Consensus 197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence 44566778888888888888888889999988855432 223445566667776666654333222222334444433
Q ss_pred h----cCC-----CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh--HHH
Q psy9169 253 I----HTT-----DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQT 321 (440)
Q Consensus 253 l----~~~-----d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~ 321 (440)
+ .++ ..+.......+|+.+......+ ..+++...+....-+++. ....+..|+++|-.+..|.+ ...
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 3 121 3467788888888888766655 555666556666666665 44567889999999998877 566
Q ss_pred HHHHHcCCHHHHHHHh
Q psy9169 322 DCVIQAGGLQKMKKLL 337 (440)
Q Consensus 322 ~~l~~~g~l~~L~~ll 337 (440)
..+++.+++..+..+.
T Consensus 355 ~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 7777777666666543
No 102
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.02 E-value=0.00024 Score=64.08 Aligned_cols=233 Identities=9% Similarity=0.108 Sum_probs=149.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHH-HHhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDEL-IEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~i-i~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
|-+++++-++.+++.|+.++.++.-... .+..+ .+..+-.+++++++ -...++|..++.+++.++.. +++.+.+
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e--~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi 230 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE--KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHH
Confidence 3345556677788888898888754322 12222 24456677888883 24578999999999999854 5555333
Q ss_pred Hh-cCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCch--hHHHHHhcCChHHHHhhhCC--CCcHHHHHHHHHH----
Q psy9169 156 IN-ANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGAR--ARDLLLGLGTMPQILALVQP--NTPTTFLRNIVWA---- 225 (440)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~~---- 225 (440)
-. ...+.-|+++.+... ..|...++.++.|++...|. .....+ .|-+.+-++.|.. -.+++++...-..
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 21 256777777777644 78889999999999975432 222233 3334444444432 1223333222111
Q ss_pred -------------HHhh----hhCCCCCCC--H-----H----HHhhHHHHHHHhhcCCCHH-HHHHHHHHHHHhccCCh
Q psy9169 226 -------------ISNL----CRNKNPAPD--F-----E----KIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHN 276 (440)
Q Consensus 226 -------------L~~l----~~~~~~~~~--~-----~----~~~~~~~~L~~ll~~~d~~-i~~~a~~~L~~l~~~~~ 276 (440)
+..| ..+.++... + . ....++..|.++++..++. ...-||.-|..+....+
T Consensus 310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P 389 (432)
T COG5231 310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP 389 (432)
T ss_pred HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence 1111 111212211 0 1 1135678888888876655 66778899999999999
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
+....+.+.|+-..++.++.|++++|+-+|+.++.-+.+
T Consensus 390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 998999999999999999999999999999999876643
No 103
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.02 E-value=1.1e-05 Score=54.46 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 300 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
+.++..|+++||+++...+...+.... .+++.|..+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999888877776444 6899999999999999999999999986
No 104
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=2.8e-05 Score=58.29 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=69.7
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169 246 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 324 (440)
Q Consensus 246 ~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l 324 (440)
+|.|++.+ ++.++.++..++++|+.+- ++ .+++.|+.++.++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 8899999999999999553 11 23899999999999999999999999872
Q ss_pred HHcCCHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy9169 325 IQAGGLQKMKKLLSSSR-VNIVKEAAWTIS 353 (440)
Q Consensus 325 ~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~ 353 (440)
+...++.|.+++.+++ ..++..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2247888999888764 567999999885
No 105
>KOG0212|consensus
Probab=97.96 E-value=0.00044 Score=67.02 Aligned_cols=317 Identities=11% Similarity=0.061 Sum_probs=184.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHH---HHHHHHhCCCc
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT---WALTNIASGTS 149 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~---~~L~nla~~~~ 149 (440)
...+++++..+.+.|..+++.||..+.++....+... ...-..+...+.++..+++..++..|= +.+..+.....
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 4567888999999999999999999888865333111 111123444555555566665553321 22233322211
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
..+-=.+.+|.|-.-+...++..|.-.+.-|..+-.. |.. +.+- -..+++.|..+|.++. .+++.-+-.++++
T Consensus 161 ---~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 161 ---STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSE 234 (675)
T ss_pred ---cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence 1222235566666666667777777666555555332 332 3222 2346677778887766 7888777777777
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh-HHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT-ILTAAL 307 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~-v~~~al 307 (440)
+...-...+........++.++.-+.++++.++..|+.-|..+..-.+.. -...-+|++..++.++.+..+. ++..+.
T Consensus 235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 66543233333345678899999999999999988877777766554432 2334468888888888776653 443333
Q ss_pred HH---HHHhhcCChHHHHHHHHcC-CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcC
Q psy9169 308 RT---VGNIATGNDHQTDCVIQAG-GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESG 383 (440)
Q Consensus 308 ~~---L~nl~~~~~~~~~~l~~~g-~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g 383 (440)
.. +..++.. +...+. ++.| +++.+...+.+.....|-.+.--+..+-...+.++-... ..
T Consensus 314 ~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~--------------~~ 377 (675)
T KOG0212|consen 314 MVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN--------------DS 377 (675)
T ss_pred HHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc--------------cH
Confidence 22 2222221 111111 4433 678888888888777777776666666655544422111 11
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 384 GLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 384 ~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
....|..-+...+++|..++..++.....++
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 2233333344555566666666666555433
No 106
>KOG2259|consensus
Probab=97.96 E-value=0.00079 Score=66.49 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=120.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH---HHHHhhhhCCC--CCCC
Q psy9169 164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV---WAISNLCRNKN--PAPD 238 (440)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~---~~L~~l~~~~~--~~~~ 238 (440)
|..+..+.+..|+.+|+.+|..+... -..-.. .....+..+.++. ..++..|+ |..+|.+-.+. ...+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 56666666666777777766666542 111111 2333455555444 56666653 44445542211 1112
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH--------------------------------------
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-------------------------------------- 280 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~-------------------------------------- 280 (440)
....-.++..+...+.+-+..++..|..+|+.+...+.+.++
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 222345566666666666667777777777665544433333
Q ss_pred ------------HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q psy9169 281 ------------AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 348 (440)
Q Consensus 281 ------------~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a 348 (440)
.++.+|+...++.-|.+.-.+|+.+|...++.|+.+.+.... ..++.|++++.+....+|..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 234445556666666665668999999999999998887665 346789999999889999999
Q ss_pred HHHHHHHhcC---ChHHHHHHhh
Q psy9169 349 AWTISNITAG---NSRQIDHVIQ 368 (440)
Q Consensus 349 ~~~L~nl~~~---~~~~~~~~i~ 368 (440)
..+|..|+.+ ..+|...+++
T Consensus 431 i~aL~~Is~~l~i~eeql~~il~ 453 (823)
T KOG2259|consen 431 IFALTMISVHLAIREEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHheecHHHHHHHHH
Confidence 9999999865 5555555543
No 107
>KOG2259|consensus
Probab=97.96 E-value=0.00028 Score=69.57 Aligned_cols=266 Identities=13% Similarity=0.083 Sum_probs=166.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHH---HHHHHHHh--CCCcHHHH
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEA---TWALTNIA--SGTSEQTM 153 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a---~~~L~nla--~~~~~~~~ 153 (440)
++.+..+.|+.++..|+..+..+-...+ .. .-.....++++.+++..+|..| +|+++|.. ....+..+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK---LS----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc---cc----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 6666777888888888877765522111 11 1246778889999999999877 66667766 22222223
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh--hh
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL--CR 231 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l--~~ 231 (440)
.-....++..++..+.+-+..||..|+.+||.+-.-+.++-.+-+... ++.-++... ...+..-...++- ++
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKK----lms~lRRkr--~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKK----LMSRLRRKR--TAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHH----Hhhhhhhhh--hcccchHHHHhcCCccc
Confidence 223346788899999999999999999999988655444322222222 222111000 0000000111111 11
Q ss_pred CCC---CCC--------CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCCh
Q psy9169 232 NKN---PAP--------DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 300 (440)
Q Consensus 232 ~~~---~~~--------~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~ 300 (440)
++. ..+ .-.+..|.-..++.-|.++=.+++.+|...++.|+...+.... ..+..|+.++.+...
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIE 424 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHH
Confidence 110 111 1112245556667777766779999999999999988775533 247899999999888
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~ 368 (440)
.|+..|+.+|..|+.. ..++...++.+...|.+..+++|...--.|.+.=-.+.+.+..++.
T Consensus 425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999988754 2334445777888888888888888777777765556666555543
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.94 E-value=1.8e-05 Score=53.47 Aligned_cols=55 Identities=31% Similarity=0.575 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186 (440)
Q Consensus 131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 186 (440)
|.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998776665555 4467999999999999999999999999986
No 109
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.014 Score=60.21 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=111.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.-++.+++.+.+.|.+++...-..+..+....+ -..+. +++.+.+=+.++|+.+|..|+++++.+-. ++.
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P---~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el-- 124 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKP---ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KEL-- 124 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH---HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHH--
Confidence 446788888889999988888777777754433 22222 58888899999999999999999998853 221
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
-..+++++.+++.++++.||..|+.++.++-.-++ +.+.+.|.+..+..++.+.+ +.+.++|+.+|..+...
T Consensus 125 ---~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 ---LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSD-PIVIANALASLAEIDPE 196 (757)
T ss_pred ---HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence 22568999999999999999999999999985543 45667778888888887766 89999999999988865
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.92 E-value=0.00012 Score=65.91 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--chhHHHHHh--cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhh
Q psy9169 169 SSPHLNLAEQATWALGNIAGDG--ARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 244 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~--~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 244 (440)
.+.+.+.+..++.-|..++..+ ......+.. ..++..+...+.+.. ..+...++.++..++...... -......
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~-~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSH-FEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence 5567888999999998888554 222222221 145556666665444 679999999999999775332 2234678
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh---HHH
Q psy9169 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND---HQT 321 (440)
Q Consensus 245 ~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~ 321 (440)
++|.|+..+.+....+...|..+|..++...... ..+ +++.+...+.+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999999999999999999999999765511 111 15677777899999999999999999987555 111
Q ss_pred H-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 322 D-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 322 ~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
. ...-..+++.+...+.++++.+|..|-.++..+...-++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1 111134788899999999999999988888887654443
No 111
>KOG1240|consensus
Probab=97.87 E-value=0.00069 Score=71.15 Aligned_cols=270 Identities=11% Similarity=0.110 Sum_probs=172.3
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh---CCCchhH
Q psy9169 119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGARAR 194 (440)
Q Consensus 119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~---~~~~~~r 194 (440)
++.+...+ .-...+.+..|+..|..++..... ...=..++|.++.++.++...||..|+.+|..+- .+-+..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 55555555 334567888899998888764322 1222368999999999999999999999888776 2333333
Q ss_pred HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC-----------------CCCCC----------CHHHH-hhHH
Q psy9169 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN-----------------KNPAP----------DFEKI-KICL 246 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-----------------~~~~~----------~~~~~-~~~~ 246 (440)
..++..-++|.|-.++.+.+...++...+.+|..|+.. .++.. ..... ..+-
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 44555667888888887754344444444444444320 11111 01111 2233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH
Q psy9169 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 326 (440)
Q Consensus 247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~ 326 (440)
.....++..+++-++...+..|.-||..-... --+.=++++|+.+|.+.++.++..-...|.-++.--. ..-++
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~s 654 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVS 654 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHH
Confidence 44556777777788888888888888321100 0112368999999999988877666555554433111 01234
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHH
Q psy9169 327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKI 406 (440)
Q Consensus 327 ~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~i 406 (440)
.+++|.|.+-|.++++.|...|..+|+-|+...--...+++ . .++.+..++-|+|.=|+..++.+
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~----------~-----i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK----------D-----ILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH----------H-----HHHhhhhheeCchHHHHHHHHHH
Confidence 57889999999999999999999999999864321111111 1 24456678999999999999988
Q ss_pred HHhhCC
Q psy9169 407 ISMAFN 412 (440)
Q Consensus 407 l~~~~~ 412 (440)
|..-..
T Consensus 720 I~~~~~ 725 (1431)
T KOG1240|consen 720 IAAIAR 725 (1431)
T ss_pred HHHHHh
Confidence 876544
No 112
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.83 E-value=5.3e-05 Score=47.53 Aligned_cols=38 Identities=45% Similarity=0.776 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 319 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 319 ~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+....+++.|+++.|+.++.++++.+++.|+|+|+||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778899999999999999889999999999999996
No 113
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.82 E-value=0.003 Score=60.63 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=162.6
Q ss_pred hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchh
Q psy9169 116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~ 193 (440)
....+.+..++-+++.+++..+.+++..+..+ ++....+.+.++--.++.-|..++ ..=|++|+..+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 33455555455344499999999999988866 566777888887777777777644 556789999998887542111
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
..+..|++..++.+..+.+ ..++..|..+|..++-.. ++.....+++..|...+.++..++...++.++.++.+
T Consensus 103 --~~~~~~vvralvaiae~~~-D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 103 --KEIPRGVVRALVAIAEHED-DRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred --ccCCHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1235678889999988866 789999999999999776 5567778999999988877766788999999999998
Q ss_pred CChhhHHHHHhcCChHHHHHhccCC-------Ch--hHHHHHHHHHHHhhcCChHHHHHHHHc-CCHHHHHHHhcCCChh
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSE-------ET--TILTAALRTVGNIATGNDHQTDCVIQA-GGLQKMKKLLSSSRVN 343 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~l~~~-g~l~~L~~ll~~~~~~ 343 (440)
.+..+ +.+...--++.++.-+.+. +. +....+..++..+....+...-.-.+. .++..|+..|..+.+.
T Consensus 177 ~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ 255 (371)
T PF14664_consen 177 SPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPE 255 (371)
T ss_pred Ccchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHH
Confidence 77654 3333222244444433322 22 234455566666655544322222222 5788899999999988
Q ss_pred HHHHHHHHHHHHhc
Q psy9169 344 IVKEAAWTISNITA 357 (440)
Q Consensus 344 i~~~a~~~L~nl~~ 357 (440)
+++...-.+..+..
T Consensus 256 ir~~Ildll~dllr 269 (371)
T PF14664_consen 256 IRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHHC
Confidence 99998888888775
No 114
>KOG2062|consensus
Probab=97.81 E-value=0.001 Score=66.55 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=123.0
Q ss_pred CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
|+...|...| ..+++.++.-++.-|+-.+.++... .+...|-..|..++.-.-+.|..++|-+.-.....
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-- 483 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-- 483 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH--
Confidence 3455666666 4455666666666666555553321 23444555555555444455555555554332111
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHH--Hhcc
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS--YISD 273 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~--~l~~ 273 (440)
.++.-++..-.......+.+-..--++-...+. ..++-|.+-+++.+.|+-++.....++. +...
T Consensus 484 -----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr--------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT 550 (929)
T KOG2062|consen 484 -----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR--------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT 550 (929)
T ss_pred -----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh--------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc
Confidence 123333333333333455555444444433332 1245567778888888888877766553 2222
Q ss_pred CChhhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHH
Q psy9169 274 GHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWT 351 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~ 351 (440)
++ .+++..|+.. .++.+.+|+..|.-+||-++..++++ ++..+.+|. +.++.||..|+.+
T Consensus 551 gn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 551 GN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred Cc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHH
Confidence 22 3457777777 56778899999999999999988865 344555554 5589999999999
Q ss_pred HHHHhcCCh
Q psy9169 352 ISNITAGNS 360 (440)
Q Consensus 352 L~nl~~~~~ 360 (440)
|+-.|+|+.
T Consensus 613 LGIaCAGtG 621 (929)
T KOG2062|consen 613 LGIACAGTG 621 (929)
T ss_pred HhhhhcCCC
Confidence 999998753
No 115
>KOG1077|consensus
Probab=97.81 E-value=0.014 Score=58.38 Aligned_cols=267 Identities=13% Similarity=0.161 Sum_probs=156.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
..+..+.+.|.|.|+..+..|+.++.++-+.+- .+.+ .. -|| ++| .+..+-++..|+.+|..+-..+++.
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~---~ea~-~~-DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREM---AEAF-AD-DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH---HHHh-hh-hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 445566667778888888888888887743221 1111 11 133 555 3344567788888888887765542
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC-CC-----------cHHHH
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-NT-----------PTTFL 219 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~-~~-----------~~~~~ 219 (440)
+-..+-...++.+|.+.+..+...+...+--|+...++.....+- -.+..|.++... +. .+=+.
T Consensus 183 ---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 183 ---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred ---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 223367888999999998888888888888888666554222211 122223333221 11 13344
Q ss_pred HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC----CC---HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169 220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TD---VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~d---~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv 292 (440)
..++.+|.++-.-. .+.......+++..+....+. .+ ......++.-..+++.+.+.--+.+. .++..|-
T Consensus 259 vKl~rlLq~~p~~~-D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg 335 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPE-DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG 335 (938)
T ss_pred HHHHHHHHhCCCCC-CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence 44555554441111 111122223344444333331 11 12233333333344433332223332 4588899
Q ss_pred HhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcC
Q psy9169 293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~ 358 (440)
++|.+.++.++.-|+..+..+++..+ ..+.+..+ .+.++..|+ ..+-.+++.|.-.|..+|..
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 99999999999999999999998754 33334443 778888888 56779999999999999864
No 116
>KOG1060|consensus
Probab=97.80 E-value=0.021 Score=58.00 Aligned_cols=204 Identities=13% Similarity=0.143 Sum_probs=144.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.-..|..+|.|......+.|+.-|..+.....+ -+...|.+|+...+.+++++...---|...|...++..
T Consensus 36 ~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-- 106 (968)
T KOG1060|consen 36 RHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-- 106 (968)
T ss_pred ChHHHHHHHhccccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--
Confidence 456799999999999999999988888766653 23468889999999999999988888888887655421
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHHhhhh
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~ 231 (440)
.=-|.++-+-|+++|+.+|..|+.+|..|--. + +.|.++-.++ .+..+-+++.|+.++-.|-+
T Consensus 107 ---LLSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 107 ---LLSINTFQKALKDPNQLIRASALRVLSSIRVP-------M----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS 172 (968)
T ss_pred ---eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------h----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence 12478888999999999999888888765322 1 2233333332 33448899999999999987
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
-... ....++..+-.+|.+.++-+.-.|+.++-.+|...-+.+ ++-..+|..+|.+-+..=+...+..|.
T Consensus 173 Ld~e-----~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 173 LDPE-----QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred CChh-----hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 6522 223677778888999999999999999998886543322 233556666665443333333333333
No 117
>KOG1077|consensus
Probab=97.76 E-value=0.018 Score=57.76 Aligned_cols=304 Identities=13% Similarity=0.110 Sum_probs=177.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..+..+-+++|+|+-.....-+-..+.-++..+. ...+. ++..+..-|.+.++..+..|+.+++|+.+ -+.+
T Consensus 73 dFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~-dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ 144 (938)
T KOG1077|consen 73 DFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENS-DLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGS--REMA 144 (938)
T ss_pred ccchHHHHHHhhcCCccHHHHhHHHHHHHHhcch-HHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHH
Confidence 4567778888887765555555555544432221 21222 34556666677889999999999999965 3444
Q ss_pred HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+.+. +-+-++|-+++ .-++..|+-+|..|-..+|+. +-..+....++.+|.+.+ ..+...++..+..|+
T Consensus 145 ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lv 215 (938)
T KOG1077|consen 145 EAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALV 215 (938)
T ss_pred HHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccc-cceeeehHHHHHHHH
Confidence 4443 22336666655 678889999999998776643 333456788899998776 777777888888888
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhh-------------cCCCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhcc
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLI-------------HTTDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLD 296 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll-------------~~~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~ 296 (440)
...++.. .......+..|..+. .-+.|.+...++++|.++-...+.. ...+ ..+++.++...+
T Consensus 216 k~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~ 292 (938)
T KOG1077|consen 216 KKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQ 292 (938)
T ss_pred HcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccc
Confidence 6652221 111222222222222 1135678888888888774322211 1111 123444444443
Q ss_pred CC----C---hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169 297 SE----E---TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 369 (440)
Q Consensus 297 ~~----~---~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~ 369 (440)
.+ + ...+...++-.-+++..-+..-+.+. ..+..|.+++.+.+.++|.-|.-.++.++.....+ +
T Consensus 293 ~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-d----- 364 (938)
T KOG1077|consen 293 EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-D----- 364 (938)
T ss_pred cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-H-----
Confidence 21 1 12334445545555554443333333 35788899999999999999999999988753221 1
Q ss_pred CcchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHHHHHHHHhhCCCC
Q psy9169 370 GELNQMALLVEESGGLEKLEALQH-HENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 370 ~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~~~~~ 414 (440)
.+... .+.|...+. .++-.|+++|..+|..+.+.+
T Consensus 365 --------avK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 365 --------AVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred --------HHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 11111 233333333 556666666666666665443
No 118
>KOG1789|consensus
Probab=97.73 E-value=0.0072 Score=62.99 Aligned_cols=260 Identities=14% Similarity=0.200 Sum_probs=162.9
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 75 TVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 75 ~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.++-+...|. ..++.+|..|+..+..+. ... +....++..|++..|+.+|++ -|..+..++.+|..+++. ++...
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~-~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~k 1847 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANK-ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSN-GQIGK 1847 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHh-ccc-HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHH
Confidence 3455666665 467889999999887553 333 567889999999999999954 588899999999999865 66666
Q ss_pred HHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCC---CchhHHHHHh----------cCChHHHHhhhCCCC-cHHH
Q psy9169 154 TVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGD---GARARDLLLG----------LGTMPQILALVQPNT-PTTF 218 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~---~~~~r~~i~~----------~g~i~~L~~ll~~~~-~~~~ 218 (440)
.-.+.|++..+..++... ++..+.+++..++.+..+ +|..+-.++. ...-+..+.++.... ++++
T Consensus 1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence 777788888888777654 488999999999998754 2222111110 011133333333111 1111
Q ss_pred H------HH-----------------------------------------------------------------------
Q psy9169 219 L------RN----------------------------------------------------------------------- 221 (440)
Q Consensus 219 ~------~~----------------------------------------------------------------------- 221 (440)
. ..
T Consensus 1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence 0 00
Q ss_pred -----------------HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 222 -----------------IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 222 -----------------a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
...++..|.+..+.-.+..---|-+|.++..+...+..+-..|+.+|..|+.+.. +...+..
T Consensus 2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~AMA~ 2086 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCDAMAQ 2086 (2235)
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHHHHhc
Confidence 1111111111110000001112335555555555555556788888888886544 5577777
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHHHHhcCC
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSS 340 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~~ll~~~ 340 (440)
...+..++..|...- ....-|+.+|..+.. ..++.....+..|+++.|+.+|+..
T Consensus 2087 l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2087 LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 788888888886543 345578888887775 3445666788899999999999864
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.71 E-value=0.005 Score=60.85 Aligned_cols=232 Identities=12% Similarity=0.115 Sum_probs=149.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC-----ChHHHHHHHHHHHHHhCCCcHHHHHHHhc
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-----NPNTQFEATWALTNIASGTSEQTMTVINA 158 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~-----~~~i~~~a~~~L~nla~~~~~~~~~i~~~ 158 (440)
.+.++.+..+|+++|.|++-..+ ..++.+++.|..+.+++.|+.. ++++.+...++|.-++...+..+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 35788999999999999986554 4567888899999999999444 78999999999999998888888766655
Q ss_pred -CCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--------
Q psy9169 159 -NAIPKFLQLLSS-----------------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-------- 212 (440)
Q Consensus 159 -g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~-------- 212 (440)
+++..++..|.. .+......++.++.|+..+.+.... -.....++.|+.++..
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 777777776631 1245567788899999865443322 1122334444444321
Q ss_pred CCcHHHHHHHHHHHHhhhhCC---------------CCCCCHHHHhhHHHHHHHhhcC-C---CHHHHHHHHHHHHHhcc
Q psy9169 213 NTPTTFLRNIVWAISNLCRNK---------------NPAPDFEKIKICLPLLNQLIHT-T---DVETLSDICWALSYISD 273 (440)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~---------------~~~~~~~~~~~~~~~L~~ll~~-~---d~~i~~~a~~~L~~l~~ 273 (440)
........+++.+|.|+-... ...........++..|-.-+.. . -.+.....+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 122567788888888773110 0011222223333333333322 1 23678888999999988
Q ss_pred CChhhHHHHH----------------hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC
Q psy9169 274 GHNDKIQAVV----------------DTGVVPRLVELLDSEETTILTAALRTVGNIATGN 317 (440)
Q Consensus 274 ~~~~~~~~l~----------------~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 317 (440)
.+....+.+. ...+-.+|++++.++.+.++..+...+..||..+
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 7654433332 1245566777777777777777777777776544
No 120
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.71 E-value=0.0001 Score=46.22 Aligned_cols=39 Identities=33% Similarity=0.674 Sum_probs=35.8
Q ss_pred cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169 149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (440)
++.+..+++.|+++.|+.+|.+++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999999999999999999997
No 121
>KOG2734|consensus
Probab=97.70 E-value=0.0081 Score=56.89 Aligned_cols=241 Identities=11% Similarity=0.107 Sum_probs=170.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCC----cHHHHHHhCCHHHHHHhccCCCh------HHHHHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKE----RHP----PIDELIEAGVVPICVELLDDENP------NTQFEAT 138 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~----~~~----~~~~ii~~g~i~~Lv~lL~~~~~------~i~~~a~ 138 (440)
..+++.++.+|.+.+.++-...+..+..+...+ ... -++.+++.++++.|++-+..-+. .-.+.++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 357888999999999999998888888775321 111 25677788999999998843232 2346678
Q ss_pred HHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-----
Q psy9169 139 WALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----- 211 (440)
Q Consensus 139 ~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~----- 211 (440)
.++-|+..-.++....+++.|.+..|+.-+.. +...-...|..+|.-+..++.+.+.......++..+++-+.
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88999998888989999999988888875543 33455667888888888887777777778889999988875
Q ss_pred C---CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--hhHHHHHhcC
Q psy9169 212 P---NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN--DKIQAVVDTG 286 (440)
Q Consensus 212 ~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~--~~~~~l~~~g 286 (440)
. .+..++..+...+|+.+...+ .........+.++...-+++. ....+..++.+|-+...+++ +....+++.+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 223577888888888777776 334444555666665555555 55677888999999887776 5567777877
Q ss_pred ChHHHHHhcc-CCC---------hhHHHHHHHHHHHhhc
Q psy9169 287 VVPRLVELLD-SEE---------TTILTAALRTVGNIAT 315 (440)
Q Consensus 287 ~~~~Lv~lL~-~~~---------~~v~~~al~~L~nl~~ 315 (440)
++..+..+.. .+. ..+-+..+..|+.+..
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7777766653 221 2344555555555543
No 122
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.67 E-value=0.0003 Score=53.42 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG 199 (440)
Q Consensus 133 i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (440)
++...+.+|+|++..++.....+.+.|++|.++....- .+|-+++.|+|+|.|++.++++.+..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45678899999999999999999999999999998764 45999999999999999999998777654
No 123
>KOG0567|consensus
Probab=97.66 E-value=0.018 Score=51.11 Aligned_cols=252 Identities=16% Similarity=0.210 Sum_probs=135.8
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKS--SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+..+.+.|.. ....-++.|+..++++.... .+..+.+...+++..++.+.+.+|+....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~------- 65 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDSALLKHELAYVLGQMQD------- 65 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccchhhhccchhhhhhhhcc-------
Confidence 3444444443 23345666677776654211 14444444434444555666666666543
Q ss_pred HHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 154 TVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
..+++.|+..|.+.+ +-||-.|..+|+.+. + + ..++.+-++.++.. ..+...+..++..+-.
T Consensus 66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~---------~~~~~l~k~~~dp~-~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P---------ESLEILTKYIKDPC-KEVRETCELAIKRLEW 129 (289)
T ss_pred ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCc-cccchHHHHHHHHHHH
Confidence 245666666666544 556666777776665 2 1 12344444442222 3344444444443332
Q ss_pred CC--------------CCCCCHHHHhhHHHHHHHhh-cCCCHHHH-HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 232 NK--------------NPAPDFEKIKICLPLLNQLI-HTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 232 ~~--------------~~~~~~~~~~~~~~~L~~ll-~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
.. +|.+. ....-+..+...| ..+.+-.. ..+...|.++- .++ .+..|++-+
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l 196 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGL 196 (289)
T ss_pred hhccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhc
Confidence 11 11111 1112233333333 32322222 23333333332 122 255677777
Q ss_pred cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcch
Q psy9169 296 DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373 (440)
Q Consensus 296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~ 373 (440)
..++.-.+..+..++|.+-+. -.++.|.+.|.. .++-+|.+|+.+|+.|+. ++
T Consensus 197 ~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~------------ 251 (289)
T KOG0567|consen 197 ADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED------------ 251 (289)
T ss_pred ccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH------------
Confidence 778888999999999987432 246777777764 367899999999999964 22
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 374 QMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 374 ~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
+++.|..+...+.+-|++-+.-.++.+
T Consensus 252 ----------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 252 ----------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ----------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 255567777777777777777777655
No 124
>KOG0567|consensus
Probab=97.63 E-value=0.005 Score=54.46 Aligned_cols=225 Identities=14% Similarity=0.237 Sum_probs=144.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+..+.+...+++....-+.+.++..+ -....+|.|+..| .+..|-+|.+|..+|+++.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~------------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---- 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM------------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---- 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh------------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence 44444444444334444555555433 2235799999988 66778999999999999872 2
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-------HHH-----HhcCChHHHHhhhCCCCcHHH-HH
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-------DLL-----LGLGTMPQILALVQPNTPTTF-LR 220 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-------~~i-----~~~g~i~~L~~ll~~~~~~~~-~~ 220 (440)
+.++.+-++.+++...|++.+..++..+-..+.... ..+ ...+-+..|-..|...+.+.+ +.
T Consensus 100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 567888888888888899988888877642110000 000 111223333333333221222 33
Q ss_pred HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--C
Q psy9169 221 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--E 298 (440)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~ 298 (440)
.+.+.|.|+.. ...+..|.+-+..++.-.+..+..+++.|-... .+|.|.+.|.. .
T Consensus 175 ~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 175 RAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETE 232 (289)
T ss_pred hhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhc
Confidence 44444444432 235667777788888889999999998886432 37788887754 4
Q ss_pred ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
.+-|+..|+.+||.|+. + ..++.|...+..+.+-+++.+..+|..+-
T Consensus 233 ~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred chHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 57899999999998753 2 24677888888888888888888887664
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.014 Score=60.19 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=130.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIP 162 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~ 162 (440)
+.|++...+..|++.+....+...+ . .-..|-+++.+.+.|.+++.-.-.-|.+++...|+.. + -+++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--m-----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--M-----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHH
Confidence 6677888888888766555444331 1 1246777777778899999999999999998877432 2 2578
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHH
Q psy9169 163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242 (440)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 242 (440)
.+.+=++++++.+|-.|+.+++.+-.. -+...+++++.+++.+.. ..+++.|+.|+.++.+-+ ++....
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld---~~l~~~ 164 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLD---KDLYHE 164 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcC---Hhhhhc
Confidence 889999999999999999999876422 222346888889988887 899999999999999765 233344
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 243 KICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 243 ~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
.|.+..+..++.++||.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777888888999999999999999888755
No 126
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.62 E-value=0.00043 Score=52.53 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169 302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~ 364 (440)
++...+++|+|++..++...+.+.+.|+++.+++... ..+|-+++.|.|++.|++.++++.-+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4667889999999999999999999999999998765 34689999999999999999887533
No 127
>KOG1058|consensus
Probab=97.47 E-value=0.0096 Score=59.98 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc-H-HHHHH------hCCHHH----HHHh------------------
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP-I-DELIE------AGVVPI----CVEL------------------ 125 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~-~~ii~------~g~i~~----Lv~l------------------ 125 (440)
-..+.+.|.+++.+.+..|+..+..++.....-+ . -.+++ ..-+.. ..++
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvc 101 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVC 101 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHH
Confidence 3467778888888888888877666655433221 1 11111 011111 1122
Q ss_pred ------ccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q psy9169 126 ------LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189 (440)
Q Consensus 126 ------L~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 189 (440)
|+++|.-+|-..++.|+.+-. ++.. ...+|.+...|.+.+..||.+|+.+++.|-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 234455566666666665532 2221 25678889999999999999999999888744
No 128
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.02 Score=56.09 Aligned_cols=260 Identities=14% Similarity=0.122 Sum_probs=137.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH------
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT------ 152 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~------ 152 (440)
|-..|++.-..+++++++.+..+....- ...+++ ..+..|-.+|.++....|+.|+++|..|+...|+..
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e 344 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE 344 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh
Confidence 3334455668899999999987654331 122222 257778888899999999999999999997655321
Q ss_pred -HHHH-hcC---CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH-------------hcCChHHHHhhhCCC
Q psy9169 153 -MTVI-NAN---AIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLL-------------GLGTMPQILALVQPN 213 (440)
Q Consensus 153 -~~i~-~~g---~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~-------------~~g~i~~L~~ll~~~ 213 (440)
+.++ +.+ ..-.+..+|+.++.+-....+..+-++..|- ..++..++ ....+.-|...|.+.
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e 424 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE 424 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 1111 111 1223444555544333333333333332111 11110000 001233333333333
Q ss_pred CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169 214 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292 (440)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv 292 (440)
..-++.+.+..+++.+.... |. ....++..|..++.+. -+++....+..|+.=....++-. ..+.++.
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~-p~----skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~------~yvrhIy 493 (898)
T COG5240 425 GGLEFKKYMVDAISDAMEND-PD----SKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG------KYVRHIY 493 (898)
T ss_pred ccchHHHHHHHHHHHHHhhC-ch----HHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc------hHHHHHH
Confidence 33566666666666655554 21 1233455555555432 34455444444443321111100 0122222
Q ss_pred HhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
.-+--.+.-++..|+.||+.++..-... +....+...|.+++.+.+..+|..|.+.|.|+-
T Consensus 494 NR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 494 NRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2222244568899999998877543211 111234567888999999999999999999985
No 129
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.11 Score=51.16 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 240 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (440)
.|.|-..|++.-+.+.-.++.++..++..+-. ...+ ...+..|-.+|.... ...+-.|+.+|..|+... |..
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~-P~k--- 337 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKY-PQK--- 337 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhC-Cce---
Confidence 34555555554455666666666665533211 1111 113444444554444 566667777777777654 221
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWAL 268 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L 268 (440)
+.-+-+.+-.++.+.+..+...|+.+|
T Consensus 338 -v~vcN~evEsLIsd~Nr~IstyAITtL 364 (898)
T COG5240 338 -VSVCNKEVESLISDENRTISTYAITTL 364 (898)
T ss_pred -eeecChhHHHHhhcccccchHHHHHHH
Confidence 111223333444455544444444443
No 130
>KOG0211|consensus
Probab=97.31 E-value=0.029 Score=58.26 Aligned_cols=247 Identities=17% Similarity=0.120 Sum_probs=137.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 239 (440)
++....+++....+.+..++.-...++.. +..++..+....++|.+-.++.+.. ..+....+..+..+..-. +..
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~---~k~ 432 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPIL---PKE 432 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccC---CcC
Confidence 44444555444444444443333333311 1111122223334455544444333 444444444433333221 122
Q ss_pred HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169 240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (440)
.......|.+...++..++.++.+..+.+..+-...+..--..+....+|.++.+-......++.+.++.+-.++....
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 2345678888888999999999999988876655444333344555678888888777778888888888887765332
Q ss_pred HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc--CChHHHHHHhh-----cCc---------chHHHHHHH---
Q psy9169 320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA--GNSRQIDHVIQ-----EGE---------LNQMALLVE--- 380 (440)
Q Consensus 320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~--~~~~~~~~~i~-----~~~---------~~~~~~~l~--- 380 (440)
..+.+...-+.+...+.+....+++.|+..+.-++. |..-+++.++. .++ ...+..+.+
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 123333334444444555567788888888887774 32222222222 111 111111111
Q ss_pred ----HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 381 ----ESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 381 ----~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
....++.+..+..++.++|+-.+.+.+.++...-
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 1224677778888999999999999888876543
No 131
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.30 E-value=0.0051 Score=57.95 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=138.5
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhc--CChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-----RDLLLGL--GTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
..+...+.+..|+..|..-+-+.+..+..+++++....... .+.+... .++..|+..-.+ +++.-.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHHHH
Confidence 34556689999999999888889999999999988553332 3344322 344444444433 4455555555
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhccCCChhH
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLDSEETTI 302 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~~~~~~v 302 (440)
|...++.. .........+.+-.+...+..++-++..+|..++..+-.........++.. ..+.....+|.+++.-+
T Consensus 147 lRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 66655553 222233334556667778888999999999999999776666555555554 45677888999999999
Q ss_pred HHHHHHHHHHhhcCChH---HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 303 LTAALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+..++..||.|...... .+..+-+..-+..++.+|.+....++-+|..++--.+++
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999999875443 234444555789999999999999999999999988875
No 132
>KOG1967|consensus
Probab=97.29 E-value=0.0025 Score=65.36 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=131.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-------------RDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
.+...|+.+|++++ +-..+..++.-+..|++.. |+.++ ..++|.|++.+...+ ...+.....+
T Consensus 815 ~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~-~~~K~~yl~~ 890 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAP-GSQKHNYLEA 890 (1030)
T ss_pred hHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCC-ccchhHHHHH
Confidence 34556777777643 3344555666665554332 22333 357889998888433 6677888888
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC---hhH
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE---TTI 302 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~---~~v 302 (440)
|+++..+-+...-......++|.|++.|.-.|..++..+..++.-+..........-+ ..++|.++.+=.+++ ..|
T Consensus 891 LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 891 LSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHH
Confidence 9988876422222223467889999999999999999999999888766554432222 345777777765554 579
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+..|+.+|+.|...-|...-.-....++..|...|+++..-+|++|..+=.+..
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 999999999998854433333334457888999999988889999988765543
No 133
>KOG0211|consensus
Probab=97.29 E-value=0.028 Score=58.43 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=178.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
++.....+.....+.+..++.-..++....+.+....+....++|.+-.+..+.++.++...+...+.++--.+. ..
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~- 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ER- 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--Cc-
Confidence 455666666666666666666555554433333345556666788888888888888888888777777543331 00
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169 156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 235 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 235 (440)
.-....|.+...+++..+.++.+..|.+..+-...+...-.......+|.+..+-... .-.++..+.+.+..++....
T Consensus 434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh-
Confidence 1124678888888899999999999988777655444444455556677777766554 36777778888877776542
Q ss_pred CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
........-+.+...+.+...+++..|...+..++..... +. .....++.++....+++..++...+.++.-++.
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--ch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 1122233445555556666778898888888887743331 11 112346777777766677778877777776653
Q ss_pred --CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 316 --GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 316 --~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|.+ +....+++.+..+..++.+.||-.++..|--+...
T Consensus 587 v~g~e-----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 587 VLGQE-----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HhccH-----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 333 44446789999999999999999999999888754
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.27 E-value=0.025 Score=53.08 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=120.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC--CcHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASG--TSEQ 151 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~--~~~~ 151 (440)
+...+..+.......|..++..+.+++...- ..+.+. ...++..+...++...++-+..|+.+++-++.. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 5667777788889999999999999987543 223222 234677777888666666666777777776543 2233
Q ss_pred HHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhh---CCCchhHHHHHhcCChHHH--HhhhC---------CCCc
Q psy9169 152 TMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIA---GDGARARDLLLGLGTMPQI--LALVQ---------PNTP 215 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~---~~~~~~r~~i~~~g~i~~L--~~ll~---------~~~~ 215 (440)
...+++ ...|.|...+.+.. ..+|..|+.+|+-++ +..+..-... ...+..+ ....+ ..++
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 344443 57888999988755 567777777777765 2222211100 1122211 11122 1223
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
..+...|+.+-+-|...- +...+ ......+|.|..+|.++|.+++..|..+|.-|-.
T Consensus 200 ~~l~~aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467777766666665443 22112 3346789999999999999999999999877753
No 135
>KOG4151|consensus
Probab=97.24 E-value=0.0048 Score=62.61 Aligned_cols=209 Identities=10% Similarity=0.008 Sum_probs=147.9
Q ss_pred CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
....-+...+..|+...|+.+.....+..+-.+..+|. .+.-.+... ...++++.+.+.+.....-....+.+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~a 565 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEA 565 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 33444557788999999999999988888888888887 333221111 23566777776655433445567788
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhccCCChhHHH
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILT 304 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~-~g~~~~Lv~lL~~~~~~v~~ 304 (440)
+.||+...+...+.......++.+-.++..+++..+..++..+.||.-++.-....+.+ ..-++....++.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 99988776544444444555666677778889999999999999999887766666666 34566666666666666777
Q ss_pred HHHHHHHHhhcCChHHHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 305 AALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
+++.++..|.+....... ..--......+..++.++++.++......++|+.....+
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e 703 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE 703 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH
Confidence 777777767665555444 333345788899999999999999999999996654443
No 136
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.21 E-value=0.033 Score=52.56 Aligned_cols=205 Identities=11% Similarity=0.105 Sum_probs=141.3
Q ss_pred HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC---HHHHh----hHHHHHHHhhcCCCHHHHHHHHHH
Q psy9169 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIK----ICLPLLNQLIHTTDVETLSDICWA 267 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~----~~~~~L~~ll~~~d~~i~~~a~~~ 267 (440)
..+...+.+..|+..|..-+ -+.++.++....++.+....... ..... .++..|+..- +++++...+-..
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHH
Confidence 44556678888888887666 78999999999999987633322 22222 2333333333 345566666666
Q ss_pred HHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CHHHHHHHhcCCChhH
Q psy9169 268 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNI 344 (440)
Q Consensus 268 L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l~~L~~ll~~~~~~i 344 (440)
|..++.. +.....++....+..+.+.+..++-++...|..++..+.+.+.......+..+ ++..+..+|.++++-+
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 6666654 44567888899999999999999999999999999999988887766666654 5678888999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
++.+...|+.|....... +.+...+.+..-+..+..|+.++...|+--|..+..-|-..
T Consensus 226 krqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred ehhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999998653321 22234444555566677778888888888887777666443
No 137
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.18 E-value=0.014 Score=57.46 Aligned_cols=204 Identities=20% Similarity=0.274 Sum_probs=125.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHH----HHHHHHHhCCCc
Q psy9169 76 VPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEA----TWALTNIASGTS 149 (440)
Q Consensus 76 i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a----~~~L~nla~~~~ 149 (440)
+..++.... +.++..+..+++.+.-++.+-... + .. ..++..+...+ ....+..+..+ +|+...+.....
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--D-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--h-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 344455443 556788888888888776542211 1 11 12233333333 23333344333 444444433222
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHhhhCCCCcH
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-------------RDLLLGLGTMPQILALVQPNTPT 216 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~L~~ll~~~~~~ 216 (440)
.. ....+..|+.+|.+ +++...++.+++-+..+.+.+ |+.++ ..++|.|++..+..+ .
T Consensus 267 ~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~-~ 337 (415)
T PF12460_consen 267 PL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEAD-D 337 (415)
T ss_pred ch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcC-h
Confidence 21 12346678888877 567788888888888773322 22332 236777777777666 4
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~ 293 (440)
+.+.+...+|+++..+-+...-......++|.+++.|..+|.+++..++.++..+....++.+..-+ ..+++.|++
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~ 413 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK 413 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence 4788889999999987632223334578999999999999999999999999999988765543322 144555544
No 138
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.11 E-value=0.023 Score=48.77 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh-HHHHh
Q psy9169 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM-PQILA 208 (440)
Q Consensus 130 ~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i-~~L~~ 208 (440)
+|.+|..++-+++-++...+...+ ..++.+...|.++++.||.+|+.+|..|...+ .+.-.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHH
Confidence 578999999999999876554333 45889999999999999999999999998552 22223333 67777
Q ss_pred hhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 209 LVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 209 ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
++.+.+ ++++..|..++..+....
T Consensus 71 ~l~D~~-~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 71 LLVDEN-PEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHcCCC-HHHHHHHHHHHHHHHHhc
Confidence 775555 899999999999999774
No 139
>KOG1248|consensus
Probab=97.09 E-value=0.14 Score=54.75 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=146.6
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc---CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINA---NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 203 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~---g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i 203 (440)
++.++.+|..+-.+|..++.. +.. ...... .+...|..-+++.....+...+.+|..|....+..-..++...+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 566889999999999999876 221 111111 233444555555555667777777777764433222233333333
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHhhh--hC---CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 204 PQILALVQPNTPTTFLRNIVWAISNLC--RN---KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~--~~---~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
+.++.+ +.. +...++++..+|..++ .. ....+....+..+++.|...+-.+........+-++..+.....+.
T Consensus 742 EvIL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444 444 4788899988888888 21 1111234566777777777665554444444355555555433322
Q ss_pred HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc-
Q psy9169 279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA- 357 (440)
Q Consensus 279 ~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~- 357 (440)
...-.=.+++..+..+|.+.+++++..|+.++..++...++..-.-...-+++.+..+++.....++..+-..|-.++.
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2222223556777777889999999999999999999877643322223477888888777777888888877777775
Q ss_pred CChHHHHHHhh
Q psy9169 358 GNSRQIDHVIQ 368 (440)
Q Consensus 358 ~~~~~~~~~i~ 368 (440)
...+.++.++.
T Consensus 900 fg~~eLe~~~p 910 (1176)
T KOG1248|consen 900 FGAEELESFLP 910 (1176)
T ss_pred hCHHHHHhhCH
Confidence 34555555554
No 140
>KOG2274|consensus
Probab=97.08 E-value=0.13 Score=53.18 Aligned_cols=237 Identities=12% Similarity=0.028 Sum_probs=153.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIP 162 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~ 162 (440)
.+..|.....+.+.+.+..+... ....+. .-.+...+..+ .+..+-++..|+.+++..+.- ... .-...+++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~--~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl-~~~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTV--INPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVL-LSLQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhc--cchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eec-cccchHHHH
Confidence 35667777788888876644321 111111 11344445555 566677888888888888732 111 112347888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhCCCCCCCHHH
Q psy9169 163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEK 241 (440)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 241 (440)
.|.++....+.++....+.+|+..+..+|+. ....+..+.|.+..+.. ..+++.+...+--++-.++...... ...
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m 610 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPM 610 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cch
Confidence 8999988888899999999999999887776 33445667777777654 3444666666667777777643211 123
Q ss_pred HhhHHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcC
Q psy9169 242 IKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATG 316 (440)
Q Consensus 242 ~~~~~~~L~~ll~~~d----~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~ 316 (440)
...++|.++..+..++ .....-++..|..+.++.+.-....+-.-++|++.++.-| ++......+..||..+...
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 4678999999998765 5666667777776665544333333444568888888644 4567788888898888887
Q ss_pred ChHHHHHHHHcCC
Q psy9169 317 NDHQTDCVIQAGG 329 (440)
Q Consensus 317 ~~~~~~~l~~~g~ 329 (440)
+.++...--+.++
T Consensus 691 ~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 691 TLEQLLTWHDEPG 703 (1005)
T ss_pred CHHHHHhhccCCC
Confidence 7666554444333
No 141
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.07 E-value=0.00085 Score=52.34 Aligned_cols=72 Identities=17% Similarity=0.347 Sum_probs=61.8
Q ss_pred CChHHHHHhc-cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 286 GVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 286 g~~~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.++..|+++| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.+|.+++++|+++|..|+.-+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3578899999 44567788889999999999999999888889999999999999999999999999988764
No 142
>KOG1943|consensus
Probab=97.06 E-value=0.58 Score=49.70 Aligned_cols=229 Identities=15% Similarity=0.161 Sum_probs=135.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.++.|.+.|++.|..++-.|++.+.++.++.+. .++ ..++...++++ ..+++..=.-++.+|+.+|...--.-.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 455666777888999999999999999876651 222 22455666666 334455666888999998853111111
Q ss_pred HHHhcCCHHHHHHhhCCCC--------HHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHH
Q psy9169 154 TVINANAIPKFLQLLSSPH--------LNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 224 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (440)
.+ ..++|.+++-|.-++ ..||+.|+.+++.++.. ++..-+.++. .....|+-.---+....+++.|..
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 11 145666666554322 56899999988888843 2322122211 122222222122333678888888
Q ss_pred HHHhhh-hCCCCCCCHHH-------------------------Hh----hHHHHHHHh-hcCCCHHHHHHHHHHHHHhcc
Q psy9169 225 AISNLC-RNKNPAPDFEK-------------------------IK----ICLPLLNQL-IHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 225 ~L~~l~-~~~~~~~~~~~-------------------------~~----~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~ 273 (440)
++-... +..+.+.-+.. .. .++..++.. +.|=|..++..+.++|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 776444 42322110000 01 112222222 345588999999999999997
Q ss_pred CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
..++. ...+.+++++....+.+...+.-+..+.|.++.
T Consensus 574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 66643 446788999988888887777766666666654
No 143
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.05 E-value=0.094 Score=44.96 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
+.++.+++-+++-||..-+ ....+.+|.+...|.++++.++..|+.+|..|...+.-. ++..++..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence 6788999999999996652 245678999999999999999999999999998765433 2223358888899
Q ss_pred cCCChhHHHHHHHHHHHhhcC
Q psy9169 296 DSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 296 ~~~~~~v~~~al~~L~nl~~~ 316 (440)
.+++++|+..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 144
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.04 E-value=0.0012 Score=51.54 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=62.7
Q ss_pred hhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 243 KICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 243 ~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
..++..|+.+| .+.|+.++.-||.=|+.++...+.....+-+.|+-..++.+|.|++++|+..|+.|+..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45788888888 45688899999999999999888887888788999999999999999999999999998764
No 145
>KOG1991|consensus
Probab=97.02 E-value=0.094 Score=54.82 Aligned_cols=261 Identities=15% Similarity=0.118 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcC-CCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh
Q psy9169 90 MRMIATRSARKMLSK-ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 168 (440)
Q Consensus 90 ~~~~a~~~l~~lls~-~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL 168 (440)
...-|++.+..+.+. .+..+.....+.=+++.+...++++.--+|..|||+++.++.-+- .....-..++....+.|
T Consensus 434 qkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l 511 (1010)
T KOG1991|consen 434 QKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCL 511 (1010)
T ss_pred hhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHh
Confidence 333345554444331 122344455555566667777778888899999999999984321 22222235667777777
Q ss_pred C-CCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHH-HhhhhCCCCCCCHHHHhh
Q psy9169 169 S-SPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKI 244 (440)
Q Consensus 169 ~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~ 244 (440)
. +.+..|+..|+.+|..+..+.+.....+. -.+.++.|+.+.+.-. .+.+..++..+ ...+..- .+........
T Consensus 512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E-nd~Lt~vme~iV~~fseEl-sPfA~eL~q~ 589 (1010)
T KOG1991|consen 512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE-NDDLTNVMEKIVCKFSEEL-SPFAVELCQN 589 (1010)
T ss_pred ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhh-chhHHHHHHH
Confidence 7 66678999999999999877654433232 1244555666665444 23333333332 2222222 1122223355
Q ss_pred HHHHHHHhhcC---C---CHHHHHHHHHHHHH---hcc---CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 245 CLPLLNQLIHT---T---DVETLSDICWALSY---ISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 245 ~~~~L~~ll~~---~---d~~i~~~a~~~L~~---l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
+.....+++.. . +.+=...|.++|.. |.. ..++... -++.-++|.+-..|++.-.++-..++..+.+
T Consensus 590 La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~ 668 (1010)
T KOG1991|consen 590 LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIVSS 668 (1010)
T ss_pred HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 56666666653 1 11222233333322 221 1221111 1233456666666777777888888888888
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
+....++-.-.++ |+++.+.+++....-..-.+..-+|.|+..
T Consensus 669 ~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 669 LTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred hhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 7765544333444 578888888888777778888889998774
No 146
>KOG0915|consensus
Probab=97.01 E-value=0.0089 Score=64.66 Aligned_cols=266 Identities=13% Similarity=0.116 Sum_probs=156.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC-CcHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMT 154 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~~~~~~ 154 (440)
...+...+.|+++..|..++..+..+...-...+-.......+...|.++|.+.+.-+|..|..-|+-+-.- +...+
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-- 897 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-- 897 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence 455667777999988887765554454332212222333345668999999888888999888888766432 22222
Q ss_pred HHhcCCHHHHHHhhCCCC---------HHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169 155 VINANAIPKFLQLLSSPH---------LNLAE-------------QATWALGNIAGDGARARDLLLGLGTMPQILALVQP 212 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~---------~~v~~-------------~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~ 212 (440)
.+.+..|+.-|..+. .++.+ ....=|+|+|.+-. +...+-.++++-++
T Consensus 898 ---~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 898 ---KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANH 967 (1702)
T ss_pred ---HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhh
Confidence 244555555553221 11111 11112333332210 11123334444443
Q ss_pred CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169 213 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292 (440)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv 292 (440)
+-.=.-+.-|+.-+..++... ..........++|.|...=.+++..++.+...+-.-|...+...+.... ..++.-|+
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred hchhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence 322222344555566666543 1122334567788888888889988888877777777766555444433 36788888
Q ss_pred HhccCCChhHHHHHHHHHHHhhcCChHH--HHHHHHcCCHHHHHHHhcCCChhHHHH---HHHHHHHHhc
Q psy9169 293 ELLDSEETTILTAALRTVGNIATGNDHQ--TDCVIQAGGLQKMKKLLSSSRVNIVKE---AAWTISNITA 357 (440)
Q Consensus 293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~--~~~l~~~g~l~~L~~ll~~~~~~i~~~---a~~~L~nl~~ 357 (440)
.-|.+....||+.+|.+|..|..|.+.. .+.+- .+-..+.+.+++-.+.+|+. ++.+|+.++.
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999987632 22222 23445556666656667765 5666776663
No 147
>KOG0414|consensus
Probab=97.01 E-value=0.012 Score=62.34 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=107.9
Q ss_pred HHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhh
Q psy9169 240 EKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIA 314 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~ 314 (440)
.....+.|.+++..+ .+||+++.+|.-+|+.++.-+.+... .-+|.|+..|. ++++.++.+++-++|-++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchh
Confidence 445678888888884 46899999999999999977664432 23899999996 889999999999999999
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH 394 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~ 394 (440)
...+...+. .-+.|...|.+.++.+|+.|..+|+++.- ..++.--|-+.....++..
T Consensus 990 v~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D 1046 (1251)
T KOG0414|consen 990 VRFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLED 1046 (1251)
T ss_pred hhcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcC
Confidence 877755543 34668899999999999999999999974 2344455666667777777
Q ss_pred CcHHHHHHHH
Q psy9169 395 ENETVYQKCY 404 (440)
Q Consensus 395 ~~~~v~~~a~ 404 (440)
++++|+..|-
T Consensus 1047 ~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1047 PNAEISDLAK 1056 (1251)
T ss_pred CcHHHHHHHH
Confidence 7777777777
No 148
>KOG1248|consensus
Probab=97.01 E-value=0.076 Score=56.54 Aligned_cols=222 Identities=13% Similarity=0.112 Sum_probs=141.3
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh---CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc-HHHHHHHhcC
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEA---GVVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINAN 159 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~---g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~~~g 159 (440)
++.+..+|..+-..|..++.. +........ .+...|..-+++.....+...+.+|..|....+ ++...+ ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 356889999999999988765 233443333 334445555556666778888888888776555 333333 333
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCC---CcHHHHHHHHHHHHhhh
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPN---TPTTFLRNIVWAISNLC 230 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~ 230 (440)
+.+.++.+ +..+...+..+..+|..|+.. ..... ...+...+.++..+ +...+....+.++..+.
T Consensus 740 I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 740 IPEVILSL-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHhc-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 44444444 777777887777777777620 00111 12455555555432 21222222255666666
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
..............++..+.-+|.++.++++..|+..+..++...++..-.-....+++.+..+++.....++..+-..+
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55545556667788889999999999999999999999999987775432222234688888877777777887777777
Q ss_pred HHhhc
Q psy9169 311 GNIAT 315 (440)
Q Consensus 311 ~nl~~ 315 (440)
-.++.
T Consensus 894 ekLir 898 (1176)
T KOG1248|consen 894 EKLIR 898 (1176)
T ss_pred HHHHH
Confidence 77664
No 149
>KOG1078|consensus
Probab=96.97 E-value=0.054 Score=55.10 Aligned_cols=260 Identities=16% Similarity=0.156 Sum_probs=146.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH--
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-- 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~-- 153 (440)
++.+=..+.+....++++|++.+..+-.... ..+.. .+..|--++.++.+.+|+.|.++|..+|...|....
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~----r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS----RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCH----hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 4555566778899999999999987643222 22222 677777788999999999999999999976654211
Q ss_pred ------HHHhcC---CHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCc-----hhHHHH-----HhcCChHHHHhhh
Q psy9169 154 ------TVINAN---AIPKFLQLLSSPH----LNLAEQATWALGNIAGDGA-----RARDLL-----LGLGTMPQILALV 210 (440)
Q Consensus 154 ------~i~~~g---~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~-----~~r~~i-----~~~g~i~~L~~ll 210 (440)
.+-+.+ ....+..+|+... ..+..+....+.+|+.+.. ..+... ...+.++-|.++|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 111111 2233444444433 3455555555566553321 111111 1233455555566
Q ss_pred CCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy9169 211 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 290 (440)
Q Consensus 211 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~ 290 (440)
++...-+..+....++..+.... +.. ....+..|...+.+. +....+...|.-|....+... .-..-+..
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~-pds----Ke~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~---~Pskyir~ 470 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEEN-PDS----KERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP---NPSKYIRF 470 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhC-cch----hhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC---CcchhhHH
Confidence 55444566666666666665543 111 122344444444322 122223333333332111000 00111233
Q ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+...+.-.+..++..|+.+|.++..+++.... .+.-.|.+.+.+.+..+|..|.+.|.++-
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 33333334667899999999999866653333 45667888888999999999999999987
No 150
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.95 E-value=0.0093 Score=45.27 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~ 382 (440)
+..++.+|+.++.+-+......++ .++++++..+.++++.+|..||.+|.|++....+.+ ...+ .
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f--~ 67 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF--N 67 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH--H
Confidence 556777777777665555554554 488999999999999999999999999986544321 1111 2
Q ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 383 GGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
...+.|..+...+++.|+..| .+|.+++
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 246778889999999988777 6666554
No 151
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.91 E-value=0.053 Score=44.79 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=98.1
Q ss_pred HHHHHhcCChHHHHhhhCCCCc-----HHHHHHHHHHHHhhhhCCCCCCCHH-HHhhHHHHHHHhhcC--CCHHHHHHHH
Q psy9169 194 RDLLLGLGTMPQILALVQPNTP-----TTFLRNIVWAISNLCRNKNPAPDFE-KIKICLPLLNQLIHT--TDVETLSDIC 265 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~--~d~~i~~~a~ 265 (440)
...++..+++..|++++.++.. .++...++.++..|-.+.. .... ....++..++..++. .|..+...++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4667889999999999997763 4778888888888887642 2222 235677777777764 3789999999
Q ss_pred HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319 (440)
Q Consensus 266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (440)
..|-+++.+++...+.+-+.=-++.|+.+|..+++.++..|+..+-.+....++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999888777777777799999999999999999999888877765444
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.029 Score=54.94 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVI 325 (440)
Q Consensus 247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~ 325 (440)
..+.+++.+.|+-++.....+++.--.+.. +.|++..|+.. .++.+.+|+.+|.-+||-+|..+.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------- 584 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------- 584 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence 356677777777776665555432222211 13667777777 567788999999999999887765
Q ss_pred HcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChH
Q psy9169 326 QAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 326 ~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
..+...+++|. +.++.+|...+.+|+-.|+|+..
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 33455556555 45788999999999988887544
No 153
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.91 E-value=0.025 Score=50.79 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHH
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l 379 (440)
.....|++.|.-++--++..+..+-..+.+..|++++.. ..+.++..+.-+|..+...++.. ...+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F 172 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence 345668888988888888888888899999999999954 46789999999999988877654 6789
Q ss_pred HHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCCCCcccc
Q psy9169 380 EESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENS 418 (440)
Q Consensus 380 ~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~~~~ 418 (440)
|+++|+..+..+..+. +.+++-+..+.|.-|+.+|....
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~ 213 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI 213 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence 9999999999998866 68999999999999998765443
No 154
>KOG4151|consensus
Probab=96.90 E-value=0.015 Score=59.22 Aligned_cols=214 Identities=14% Similarity=0.051 Sum_probs=147.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC-hHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.+++.|..+..-+.+...+....+|.-.++...... ..+++++...++... -.-.++++.+++|+++.+...+
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r 577 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR 577 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence 567777777777777888887777763323333221 235667777663322 2334789999999999988888
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
+.+...-.++.+-.++...++.++..++..+.||....--+...+.+ ...++.....+.. ........++.++..+..
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~s 656 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITS 656 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhh
Confidence 88888888888888888899999999999999999774444344444 3344444444444 335556666666664554
Q ss_pred CCCCCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169 232 NKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 294 (440)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l 294 (440)
....... ..........++.++.+.+++++.-.+..+.++.....+....++....++.+..+
T Consensus 657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 4323222 44556677888899999999999999999999777777776676666666665544
No 155
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.89 E-value=0.12 Score=49.96 Aligned_cols=192 Identities=11% Similarity=0.111 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCC---CchhHHHHHhcCChHHHHhhhC
Q psy9169 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGD---GARARDLLLGLGTMPQILALVQ 211 (440)
Q Consensus 136 ~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~---~~~~r~~i~~~g~i~~L~~ll~ 211 (440)
.|+.+|-.+....+.....+.+.+++..++..|..+-....+. . +...+ .+..+..... ...+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~i- 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIPPEYKESSVD-------GYSI- 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCCCCccccccc-------cccc-
Confidence 4666777777676777778899999999999886442221110 0 11100 0011000000 0000
Q ss_pred CCCcHHHHHHHHHHHHhhhh-CCCCC--CCHHHH-hhHHHHHHHhhcCC---CHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 212 PNTPTTFLRNIVWAISNLCR-NKNPA--PDFEKI-KICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~-~~~~~--~~~~~~-~~~~~~L~~ll~~~---d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
......+++..+..+..+.. +.... ...... ..++..|...+.+. -+.+...|+.++..+..+.+.....+.+
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e 149 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE 149 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 00113455555566666555 22111 112223 45666777777664 4689999999999999999999999999
Q ss_pred cCChHHHHHhcc-C---CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169 285 TGVVPRLVELLD-S---EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 341 (440)
Q Consensus 285 ~g~~~~Lv~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~ 341 (440)
+|+.+.+++.+. . ++.++....-.+++.||-++. ..+.+.+.+.++.+.+++.+++
T Consensus 150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHH
Confidence 999999999988 3 345666666678888887655 6677888999999999998764
No 156
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.86 E-value=0.27 Score=51.70 Aligned_cols=200 Identities=16% Similarity=0.211 Sum_probs=122.0
Q ss_pred hcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCC----cHHHHHHHHH
Q psy9169 157 NANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNT----PTTFLRNIVW 224 (440)
Q Consensus 157 ~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~----~~~~~~~a~~ 224 (440)
+.|++..++.++.+.. ..+....+..|...+.- +.+|..+++.|+++.|+..+. ... ...+....+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 5689999999997632 34555566666655555 888999999999999998886 221 1455555555
Q ss_pred HHHhhhhCCCCC-C----C---HH----HHhhHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy9169 225 AISNLCRNKNPA-P----D---FE----KIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVV 288 (440)
Q Consensus 225 ~L~~l~~~~~~~-~----~---~~----~~~~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~ 288 (440)
.+-.|....+.. . . .. ....-+..+++.+.+ .++.+....+.+|.+|+.++.+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 555444322110 0 0 00 022335555555544 468999999999999999999888777543 2
Q ss_pred HHHHHhccC--CChhHHHHHHHHHHHhhcCC------hHHHHHHHHcCCHHHHHHHhcCCCh--------hHH-------
Q psy9169 289 PRLVELLDS--EETTILTAALRTVGNIATGN------DHQTDCVIQAGGLQKMKKLLSSSRV--------NIV------- 345 (440)
Q Consensus 289 ~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~------~~~~~~l~~~g~l~~L~~ll~~~~~--------~i~------- 345 (440)
.+.+++=.- ....--...+.+++.++.+- ....+.+++.|++...++++...-| ..+
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 222222111 11111123356666666532 3567889999999988888764322 222
Q ss_pred -HHHHHHHHHHhcCC
Q psy9169 346 -KEAAWTISNITAGN 359 (440)
Q Consensus 346 -~~a~~~L~nl~~~~ 359 (440)
+.+...|.-++.|.
T Consensus 352 Lp~iL~lL~GLa~gh 366 (802)
T PF13764_consen 352 LPYILRLLRGLARGH 366 (802)
T ss_pred HHHHHHHHHHHHhcC
Confidence 33666667777653
No 157
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.77 E-value=0.11 Score=46.53 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHH-H-hCCHHHHHHhc-------cCC--Ch---HHHHHHHHHHHHHhCCCcHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELI-E-AGVVPICVELL-------DDE--NP---NTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii-~-~g~i~~Lv~lL-------~~~--~~---~i~~~a~~~L~nla~~~~~~~ 152 (440)
+++.+..|+..|.+-- +..+....+. . -|.+..|++=+ ..+ ++ .-...|+..|..+|+ +++.+
T Consensus 8 ~~~~Re~Al~eLsk~r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKR--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTC--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhh--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 5788999998887652 2323343333 3 37777765533 111 11 122345555556676 58889
Q ss_pred HHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAG-DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
..++++.+.-.|..+|...+ +.+|-.+++++|.+.. ++++.-..++..+++|..++.++.++ +-.+..|+..+
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs-elSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS-ELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc-HHHHHHHHHHH
Confidence 99999999888888886543 6788899999999994 55677788889999999999999876 55666677777
Q ss_pred HhhhhCCC-------CCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 227 SNLCRNKN-------PAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 227 ~~l~~~~~-------~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
..+..++. ....+..+..++..++. +....++.+...++++...|+++...+
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 66665431 11233344455554443 445678999999999999999877643
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.75 E-value=0.15 Score=47.70 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=113.4
Q ss_pred CCHHHHH-HhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh-CCCchhH
Q psy9169 117 GVVPICV-ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARAR 194 (440)
Q Consensus 117 g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~r 194 (440)
+++..|+ ..+.+.++.+|..++.+|+-++.-+.+... ..++.+...++..+..++..|+.++..+. .++...-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555555 455888999999999999999977554332 34677888887778999999999999887 2222211
Q ss_pred HHH-------HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHH
Q psy9169 195 DLL-------LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----TTDVETLSD 263 (440)
Q Consensus 195 ~~i-------~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~ 263 (440)
+.. ....++..+...+.+.+ ++++..++..++.|.-...-.. ...++..|+-+.. .++..++..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 12346667777777774 8899999999999886652222 2334444433332 234566666
Q ss_pred HHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169 264 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298 (440)
Q Consensus 264 a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~ 298 (440)
....+-..+..+... +..+....+|.+-.+...+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666666777666655 5666677777777776554
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.70 E-value=0.0069 Score=45.95 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169 219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298 (440)
Q Consensus 219 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~ 298 (440)
++-++++|..++.+- +.........++|+++..+.++|..++..||.+|.+++....+.+-. .=..+++.|.+++.++
T Consensus 3 R~ggli~Laa~ai~l-~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIAL-GKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHc-hHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 455677888877665 22334456889999999999999999999999999999655432211 1146788899999999
Q ss_pred ChhHHHHHHHHHHH
Q psy9169 299 ETTILTAALRTVGN 312 (440)
Q Consensus 299 ~~~v~~~al~~L~n 312 (440)
++.|+..| ..|-+
T Consensus 81 d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 81 DENVRSAA-ELLDR 93 (97)
T ss_pred chhHHHHH-HHHHH
Confidence 99988766 33433
No 160
>KOG0915|consensus
Probab=96.69 E-value=0.12 Score=56.50 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=130.8
Q ss_pred CHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 118 VVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 118 ~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
.|-.|+++- ++....-+.-|+.-++.|+....+..+... .-.||.|.++=.+|+..|+..-..+...|..|+...-+.
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 445555555 444455666778888888765433222222 357899999999999999887666666677775544444
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHhhcCCCHHHHH---HHHHHHHHhc
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETLS---DICWALSYIS 272 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~ll~~~d~~i~~---~a~~~L~~l~ 272 (440)
.+. .+++.|+.-+.+.. =.+++.+|.+|..|.++. +..++ ....++...+...+.+-.+.++. .++.+|+.++
T Consensus 1036 y~n-eIl~eLL~~lt~ke-wRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNLTSKE-WRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHH-HHHHHHHHhccchh-HHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 35666666665554 679999999999999996 32222 12233333344433333344444 4566666666
Q ss_pred cCCh-----hhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169 273 DGHN-----DKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 344 (440)
Q Consensus 273 ~~~~-----~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i 344 (440)
...- ...+.++ ..++|.|+.- +.+.-++++..++.++..++-+......... ..+++.|++....-++.+
T Consensus 1113 vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred hhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHH
Confidence 2111 1111111 2334544432 1255678999999999999877665443322 246777777776655543
No 161
>KOG2274|consensus
Probab=96.66 E-value=0.7 Score=48.18 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=141.7
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARAR 194 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r 194 (440)
+++..|+++......++-.....+|+..+..+++... -.++.+.|.++.++. ++++.+...+-.++-.++.. ..+
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~- 606 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AAN- 606 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHh-
Confidence 5667777777666778887888888888887776543 345567777666664 34566666666666666531 111
Q ss_pred HHHHhcCChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHH
Q psy9169 195 DLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSY 270 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~ 270 (440)
..-...-.||.|++.+.... +.....-++..|..+.++.+++..-.....++|++.++. +++|.++...+-.+|..
T Consensus 607 ~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra 686 (1005)
T KOG2274|consen 607 YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA 686 (1005)
T ss_pred hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence 11112346899999998443 356777788888888888867666677788899988876 55778899999999988
Q ss_pred hccCChhhHHHHHhcC------ChHHHHHhccCCChhHHHHHHHHHHHhhc----CChHHHHHHHHcCCHH-HHHHHhcC
Q psy9169 271 ISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIAT----GNDHQTDCVIQAGGLQ-KMKKLLSS 339 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g------~~~~Lv~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~l~~~g~l~-~L~~ll~~ 339 (440)
+.....+....--..+ ++..+-++|.- +.-..++..+|.++. .-......-++ .++. .+.++-..
T Consensus 687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~a 762 (1005)
T KOG2274|consen 687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQA 762 (1005)
T ss_pred HHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHh
Confidence 8876554433222222 23334444432 222233334444432 21111111111 1122 22333334
Q ss_pred CChhHHHHHHHHHHHHhcCChHH
Q psy9169 340 SRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 340 ~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
....+......+++++.....++
T Consensus 763 e~lsviQsLi~VfahL~~t~~~~ 785 (1005)
T KOG2274|consen 763 ETLSVIQSLIMVFAHLVHTDLDQ 785 (1005)
T ss_pred hhHHHHHHHHHHHHHHhhCCHHH
Confidence 45566666777777776655444
No 162
>KOG1058|consensus
Probab=96.64 E-value=0.16 Score=51.57 Aligned_cols=239 Identities=13% Similarity=0.186 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 166 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~ 166 (440)
++.+|.-.+..+++..... |. .++..+..+..+|.+.++.+.++|+..|..++.. +.... -+...++.
T Consensus 219 ~~~LqlViVE~Irkv~~~~--p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk-----~Aa~~~i~ 286 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLAN--PA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALK-----AAASTYID 286 (948)
T ss_pred cHHHHHHHHHHHHHHHhcC--HH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHH-----HHHHHHHH
Confidence 3445555555555543311 11 1223466777888777899999999999988765 32221 12334444
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169 167 LLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245 (440)
Q Consensus 167 lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 245 (440)
++-. ++-.+.-..+.-|..+... . ..+ -.|.+--++++|..++ .++++.++.....|....+ ..++
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~---~-~~i-l~~l~mDvLrvLss~d-ldvr~Ktldi~ldLvssrN-------vedi 353 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKAL---H-EKI-LQGLIMDVLRVLSSPD-LDVRSKTLDIALDLVSSRN-------VEDI 353 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhh---h-HHH-HHHHHHHHHHHcCccc-ccHHHHHHHHHHhhhhhcc-------HHHH
Confidence 4432 2223333334444444311 1 111 1344555667776666 8899999888888887653 2233
Q ss_pred HHHHHHhh-c------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Q psy9169 246 LPLLNQLI-H------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 318 (440)
Q Consensus 246 ~~~L~~ll-~------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~ 318 (440)
+..|..=+ . ..+..-+.....++...+..-++.. +.+++.|++.+.+.++......+..+.......+
T Consensus 354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 33333222 1 1234567778888888887766543 3458999999999988877778888887776666
Q ss_pred HHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhcCCh
Q psy9169 319 HQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 319 ~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~ 360 (440)
..+..+ +..|+.-+.. ....+.+.|.|.++..|.+..
T Consensus 429 ~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 429 NLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 544433 3444444432 345788899999999998754
No 163
>KOG4653|consensus
Probab=96.64 E-value=0.076 Score=54.65 Aligned_cols=224 Identities=9% Similarity=0.056 Sum_probs=143.3
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q psy9169 121 ICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200 (440)
Q Consensus 121 ~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (440)
.-+..+.++.+.++..++..|..+...- .....+...+++...+.+|++.++-+--.|+..+..+|.-.+ .
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence 3344446677789999999999998643 445566677999999999999998888889998888874433 3
Q ss_pred CChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 201 GTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 201 g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
.++|.+...-.+.. ..+.+-.+-.++.++.+..++ ........++......++++|...+..++..++.+|.....
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 46777776433211 123444455677776655422 22223345666777777777888899999999999965443
Q ss_pred hHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHc---CCHHHHHHHhcCC-ChhHHHHHHHHH
Q psy9169 278 KIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSS-RVNIVKEAAWTI 352 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---g~l~~L~~ll~~~-~~~i~~~a~~~L 352 (440)
.....+ ..++..++.+.. +.+.-++++|+..+..+..|.....-.+... .....+..+.... +..++..|+.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222211 233455555553 4567899999999999988766443333322 2333344444433 445667777666
Q ss_pred HHH
Q psy9169 353 SNI 355 (440)
Q Consensus 353 ~nl 355 (440)
--+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 544
No 164
>KOG1078|consensus
Probab=96.58 E-value=0.24 Score=50.66 Aligned_cols=253 Identities=16% Similarity=0.168 Sum_probs=137.1
Q ss_pred HhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--------H
Q psy9169 124 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------D 195 (440)
Q Consensus 124 ~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--------~ 195 (440)
.+|.+....+..+|+.++.++...++.... .++..|--++.++...+|-.|+.+|..+|...|..- .
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 344677788999999999999765443221 278888888999999999999999999995544321 1
Q ss_pred HHHhcC---ChHHHHhhhCCCCc---HHHHHHHHHHHHhhhhCCCCCCCH-----------HHHhhHHHHHHHhhcC-CC
Q psy9169 196 LLLGLG---TMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAPDF-----------EKIKICLPLLNQLIHT-TD 257 (440)
Q Consensus 196 ~i~~~g---~i~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~-----------~~~~~~~~~L~~ll~~-~d 257 (440)
.+-..+ .-..+..+|+.+.. ..+........++++..-. .... ......++.|..+|.. +-
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFK-ivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg 405 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFK-IVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGG 405 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccce-EEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccC
Confidence 111000 12223333433331 1122222222222222210 0000 0112334444455543 33
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHH
Q psy9169 258 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 336 (440)
Q Consensus 258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~l 336 (440)
-+-..+...++..+....++... .++..|..++.+.. ..+....+..||.=+...+. ...-+..+.+.
T Consensus 406 ~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~------Pskyir~iyNR 474 (865)
T KOG1078|consen 406 FEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN------PSKYIRFIYNR 474 (865)
T ss_pred chHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC------cchhhHHHhhh
Confidence 45566666666666654443322 23556666664432 22333333333322211111 11223444444
Q ss_pred hcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 337 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 337 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
+.-.+..+|..|..+|.++.++++.-... ..-.+..++...+.+|+++|.-.+...-
T Consensus 475 viLEn~ivRaaAv~alaKfg~~~~~l~~s------------------I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 475 VILENAIVRAAAVSALAKFGAQDVVLLPS------------------ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCcccc------------------HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 44456778889999999998765432222 2345677889999999999998888775
No 165
>KOG4535|consensus
Probab=96.58 E-value=0.071 Score=51.34 Aligned_cols=272 Identities=10% Similarity=0.036 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhHHHHHhcCChHHH
Q psy9169 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-----GDGARARDLLLGLGTMPQI 206 (440)
Q Consensus 132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~i~~L 206 (440)
.++.+++.+|..++..-.-.+..++ .....+...+....+.+.+.+..++..+- .+.|+..+.-...+.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 4778888888888765333233333 33445555566677888888888776664 2333322222222211111
Q ss_pred ------HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169 207 ------LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280 (440)
Q Consensus 207 ------~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~ 280 (440)
-....+..........|-+++++....-....-......+..+..+-.+.+.-++..|.+++..+.-+..-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 11222222245667777777777643211110000011111111222233445777888888877776654444
Q ss_pred HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc----CCh---HHHHHHHHcCCHHHHHHHhcC---CChhHHHHHHH
Q psy9169 281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT----GND---HQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAW 350 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~----~~~---~~~~~l~~~g~l~~L~~ll~~---~~~~i~~~a~~ 350 (440)
...-..+...+...|.+.....+..+.|++|||.. +.+ .+...+.-. .+..+...... .+..++..|..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 44444556667777777777899999999999974 222 233333321 23333333322 24578999999
Q ss_pred HHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 351 ~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
+|.|+.. ..+.+.+.+ ...+++......+.......+-.|+=.|+.++.++|..+.
T Consensus 507 aLgnllQ----vlq~i~~~~-----~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 507 ALGNLLQ----FLQPIEKPT-----FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHhhHHH----HHHHhhhcc-----HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 9999863 223333211 1111111112222223345577899999999999998664
No 166
>KOG1943|consensus
Probab=96.54 E-value=0.28 Score=51.95 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=128.4
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (440)
+++..|+..|++.+..|+-.|+..++.++...|. .+...++...++++....+......+|-+|+.|+...- ..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--Ll 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--LL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--cc
Confidence 5677788888888899999999999999977662 22334566777777766667889999999999997652 22
Q ss_pred HHHHhhHHHHHHHhhcC--------CCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 239 FEKIKICLPLLNQLIHT--------TDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~--------~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
......++|.+..-+.- .-..|+.+||.+++.++...... ...+++.=.-..|...+-+++..++..|..+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 33456788888877743 23468899999998888655422 2222222112233444566777888888888
Q ss_pred HHHhhcC--Ch-HH----------------------HHHHHH-cCCHHHHHH-HhcC----CChhHHHHHHHHHHHHhcC
Q psy9169 310 VGNIATG--ND-HQ----------------------TDCVIQ-AGGLQKMKK-LLSS----SRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 310 L~nl~~~--~~-~~----------------------~~~l~~-~g~l~~L~~-ll~~----~~~~i~~~a~~~L~nl~~~ 358 (440)
+...+.. +- .. ...+.+ .|....+++ ++.+ =+..++..++|+|.++...
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 7765532 10 00 001111 233344443 3333 3678999999999998866
Q ss_pred ChHH
Q psy9169 359 NSRQ 362 (440)
Q Consensus 359 ~~~~ 362 (440)
.++.
T Consensus 575 ~pk~ 578 (1133)
T KOG1943|consen 575 EPKY 578 (1133)
T ss_pred hHHh
Confidence 5544
No 167
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.51 E-value=0.19 Score=45.29 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC
Q psy9169 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 211 (440)
Q Consensus 133 i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~ 211 (440)
....|+.+|.-++--++..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.....+-..+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45667889999998899999999999999999999954 45889999999999999998988888889999999999999
Q ss_pred CCC-cHHHHHHHHHHHHhhhhC
Q psy9169 212 PNT-PTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 212 ~~~-~~~~~~~a~~~L~~l~~~ 232 (440)
+.. +.+++-.++..|.-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 543 567777777766655543
No 168
>KOG4653|consensus
Probab=96.49 E-value=0.15 Score=52.60 Aligned_cols=223 Identities=13% Similarity=0.171 Sum_probs=138.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
+...+..++++-+.++-.|+..++.++... .....+...+++..+++.|++.++-+-..|+..+..+|.-.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r--~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR--KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------ 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc--chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence 455566677788889999999999998643 234566678999999999999999999999998888885433
Q ss_pred HhcCCHHHHHH-hhCCCC---HHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 156 INANAIPKFLQ-LLSSPH---LNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 156 ~~~g~i~~L~~-lL~~~~---~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
..++|.|.. +.+..+ ++.+-..-.++++++.. ++-+... .. -.+...+..+++++ ...+..++..++++|
T Consensus 801 --e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~-~Li~tfl~gvrepd-~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 801 --EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KA-VLINTFLSGVREPD-HEFRASSLANLGQLC 875 (982)
T ss_pred --hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HH-HHHHHHHHhcCCch-HHHHHhHHHHHHHHH
Confidence 467888887 333322 23333344566665522 1111111 11 34566667777553 677888999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhcc-CCChhHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLD-SEETTILTA 305 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~-~~~~~v~~~ 305 (440)
+-..-.. .....+++..++.+... +...++.+|...+..+-.+.....-.+... .....+..+.. +++..++..
T Consensus 876 q~~a~~v-sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klh 954 (982)
T KOG4653|consen 876 QLLAFQV-SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLH 954 (982)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 7642111 12445666666666654 457788999999988887655332222211 22223333332 234445555
Q ss_pred HHHHHHH
Q psy9169 306 ALRTVGN 312 (440)
Q Consensus 306 al~~L~n 312 (440)
|+.++-.
T Consensus 955 aql~lee 961 (982)
T KOG4653|consen 955 AQLCLEE 961 (982)
T ss_pred HHHHHHH
Confidence 5555443
No 169
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.47 E-value=1.5 Score=46.32 Aligned_cols=236 Identities=16% Similarity=0.183 Sum_probs=137.7
Q ss_pred HhCCHHHHHHhccC-----CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC----CCC----HHHHHHHHH
Q psy9169 115 EAGVVPICVELLDD-----ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS----SPH----LNLAEQATW 181 (440)
Q Consensus 115 ~~g~i~~Lv~lL~~-----~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~v~~~a~~ 181 (440)
+.|++..|+.++.+ ....+-...+..|..++ .-+.+++.+++.|+++.|+..|. .+. .++.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 35788888888832 12233344455555544 55889999999999999998884 333 678888887
Q ss_pred HHHHhhCCCchhHH----HHHhc--------CChHHHHhhhCCC---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169 182 ALGNIAGDGARARD----LLLGL--------GTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246 (440)
Q Consensus 182 ~L~nl~~~~~~~r~----~i~~~--------g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 246 (440)
++..+..+...... ..... .-+..|++.+.+. .+..+....+..|.+|+.+.... ....+..+-
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-m~~Lv~~F~ 272 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-MDALVEHFK 272 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH-HHHHHHHHH
Confidence 77777643211100 00111 1266677777643 34788999999999999987321 111122222
Q ss_pred HHHHHhhc-----CCCHHHHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhccCCC--------hh------
Q psy9169 247 PLLNQLIH-----TTDVETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDSEE--------TT------ 301 (440)
Q Consensus 247 ~~L~~ll~-----~~d~~i~~~a~~~L~~l~~~~------~~~~~~l~~~g~~~~Lv~lL~~~~--------~~------ 301 (440)
|.+ ++=. ..+.... +.+++.++.+- ....+.+++.|++...+.+|...- ++
T Consensus 273 p~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 273 PYL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred Hhc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 222 1111 1122233 44444444321 355688899999999999885421 11
Q ss_pred --HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhc
Q psy9169 302 --ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 357 (440)
Q Consensus 302 --v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~ 357 (440)
-...++..|.-++.++.. ++.++..++++.+..+=... +..|=.-|--.|-.+..
T Consensus 349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 234577778888887664 45567777886665555433 34454445555555554
No 170
>KOG3036|consensus
Probab=96.46 E-value=0.41 Score=42.23 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=123.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhc-------c----CCChHHH-HHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELL-------D----DENPNTQ-FEATWA 140 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL-------~----~~~~~i~-~~a~~~ 140 (440)
..+.+++-.+.+ +..+..|+..+.+.....+ .-...+.. -|....|+.-. . ++...-| ..|+..
T Consensus 26 dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~-dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~L 102 (293)
T KOG3036|consen 26 DKAYQLILSLVS--PPTREMALLELSKKREPFP-DLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALAL 102 (293)
T ss_pred cchhhHHHHhhC--CchHHHHHHHHHHhccCCc-cccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHH
Confidence 346666655554 3455666666665422111 11223333 24444444322 1 1122233 345555
Q ss_pred HHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCC
Q psy9169 141 LTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNT 214 (440)
Q Consensus 141 L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~ 214 (440)
|..+++ .++.+..++++.+--.|-.+|.. +.+.+|-.++++|+.+... +.+.-..+...+++|..++.+..++
T Consensus 103 lQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS 181 (293)
T KOG3036|consen 103 LQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS 181 (293)
T ss_pred HHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc
Confidence 555555 48889999998887777777753 3478999999999999954 4556677779999999999999888
Q ss_pred cHHHHHHHHHHHHhhhhCCCCCC--------CHHHHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 215 PTTFLRNIVWAISNLCRNKNPAP--------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 215 ~~~~~~~a~~~L~~l~~~~~~~~--------~~~~~~~~~~~L~-~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+.-+..|+..+..+..++ ... .+..+..++..++ ++.+.+++.+...++++..+|+++..
T Consensus 182 -elSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 182 -ELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred -HHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 666777777777766554 221 2223333444333 44466888999999999999997654
No 171
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.42 E-value=0.015 Score=50.31 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc---------CCChHHHHHHHHHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---------DENPNTQFEATWALTNI 144 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~---------~~~~~i~~~a~~~L~nl 144 (440)
.....+++.+.+..... ..+..|+..+...+...++.+++.|++..|+.+|. ..+..++.+++.||..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677888888765543 44455555554443234788999999999999882 13457899999999999
Q ss_pred hCCCcHHHHH-HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169 145 ASGTSEQTMT-VINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 145 a~~~~~~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (440)
.... ..... +-..+++..|+..|.+++..++..++.+|..+|
T Consensus 144 ~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8654 44444 445789999999999999999999999998876
No 172
>KOG1991|consensus
Probab=96.39 E-value=0.5 Score=49.66 Aligned_cols=297 Identities=13% Similarity=0.130 Sum_probs=162.7
Q ss_pred CCHHHHHHhcc--------CCChHHHHHHHHHHHHHhCC--CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169 117 GVVPICVELLD--------DENPNTQFEATWALTNIASG--TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186 (440)
Q Consensus 117 g~i~~Lv~lL~--------~~~~~i~~~a~~~L~nla~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 186 (440)
|+++.++..|. ..++.-..-|+.+++++++- ...--+..++.=+++.+...++++..-+|..|||+++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45666666663 12345566788888888742 011112233444566777777888899999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHHhhHHHHHHHhhcCCCHHHHHHH
Q psy9169 187 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLLNQLIHTTDVETLSDI 264 (440)
Q Consensus 187 ~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~L~~ll~~~d~~i~~~a 264 (440)
+... +.+...-..++....+.|.++....++..|+.+|..+..+...... ...+.++++.|..+.+..+.+....+
T Consensus 490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 9321 2223333445667777777666688999999999999887632212 11235556666666666665555555
Q ss_pred HHHH-HHhccCChhhHHHHHhcCChHHHHHhccC---C---ChhHHHHHHHHHHHhhc------CChHHHHHHHHcCCHH
Q psy9169 265 CWAL-SYISDGHNDKIQAVVDTGVVPRLVELLDS---E---ETTILTAALRTVGNIAT------GNDHQTDCVIQAGGLQ 331 (440)
Q Consensus 265 ~~~L-~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~---~---~~~v~~~al~~L~nl~~------~~~~~~~~l~~~g~l~ 331 (440)
+..+ +..+..-......+. ..+.....+++.. . +.+-...|.++|..+.+ ..++..+ =++..+++
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~ 645 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 5543 233322211111111 2334555566653 1 12233444444444432 2232222 22334677
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcC------cHHHHHHHhcCC------cHHH
Q psy9169 332 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESG------GLEKLEALQHHE------NETV 399 (440)
Q Consensus 332 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g------~l~~l~~L~~~~------~~~v 399 (440)
.+-.++.+.-.++-.+++-.+.+++.-.++---.+-. -...+...+.+-| ....|.+....+ ++.-
T Consensus 646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y 723 (1010)
T KOG1991|consen 646 VIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDY 723 (1010)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchH
Confidence 7777887777788888888888887543210000000 0011112222222 233444433333 4455
Q ss_pred HHHHHHHHHhhCCCCccccc
Q psy9169 400 YQKCYKIISMAFNDSAENSI 419 (440)
Q Consensus 400 ~~~a~~il~~~~~~~~~~~~ 419 (440)
.+....++.+.+..++.+|.
T Consensus 724 ~~il~~i~~~~l~~e~~~D~ 743 (1010)
T KOG1991|consen 724 LQILLEIIKKVLTSENGEDS 743 (1010)
T ss_pred HHHHHHHHHHHHcCCCCchH
Confidence 56667888888888766554
No 173
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.38 E-value=0.46 Score=44.61 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=115.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHH
Q psy9169 164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFE 240 (440)
Q Consensus 164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 240 (440)
.+..+.+.....|+.++..|.++...... .+.+. ...++..+.+.++.+.. +-...++.++.-++-.-. ......
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34444555577888888888887744322 23332 23357777888887774 445566666666664421 123345
Q ss_pred HHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHH--Hhcc----------CCChhHH
Q psy9169 241 KIKICLPLLNQLIHTTD--VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLV--ELLD----------SEETTIL 303 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d--~~i~~~a~~~L~~l~---~~~~~~~~~l~~~g~~~~Lv--~lL~----------~~~~~v~ 303 (440)
....+.|.|...+.... ..++..++.+|+-++ ....+.+...++ .+..+. ..++ .+++.+.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 56788899998887643 455566665665544 333333331111 122111 1111 1235688
Q ss_pred HHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 304 TAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 304 ~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
..|+.+-+-|.+.-+. .....++ ..++.|..+|.+.+..+|..|.-+|.-|..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999888888765554 2233332 468999999999999999999999887764
No 174
>KOG0414|consensus
Probab=96.36 E-value=0.032 Score=59.14 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=122.8
Q ss_pred CCHHHHHHhc----cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q psy9169 117 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA 191 (440)
Q Consensus 117 g~i~~Lv~lL----~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 191 (440)
...|.+++.. ..++|++|..|.-+|+.+..-+.+... ..+|.|+..|. ++++.+|.+++-++|-++---|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3567777777 356799999999999999876555433 45788999997 7889999999999999985444
Q ss_pred hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169 192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 271 (440)
Q Consensus 192 ~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l 271 (440)
..-+ ..-+.|...|.+.+ +.+++.|..+|++|..+. +..+.|.++.+..+|.+++++|..-|=..+..|
T Consensus 994 nlie-----~~T~~Ly~rL~D~~-~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 NLIE-----PWTEHLYRRLRDES-PSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred cccc-----hhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 4322 23456677776666 899999999999999775 567889999999999999999988888788778
Q ss_pred ccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169 272 SDGHNDKIQAVVDTGVVPRLVELLDSE 298 (440)
Q Consensus 272 ~~~~~~~~~~l~~~g~~~~Lv~lL~~~ 298 (440)
+...... .+++|-++.-|.++
T Consensus 1063 s~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccch------hhhchHHHHhhccC
Confidence 7655322 24567777666665
No 175
>KOG4535|consensus
Probab=96.29 E-value=0.66 Score=44.96 Aligned_cols=101 Identities=23% Similarity=0.238 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHH
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 336 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~l 336 (440)
-+......|.++++|.....+....=.+.-.+-.+...=.+.+.-++.+|+++++-.+.+..-.+....-.+....+...
T Consensus 362 ~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s 441 (728)
T KOG4535|consen 362 HPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS 441 (728)
T ss_pred CCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence 34567888888888875433221000000111122222234445688899999998887665555545555566777777
Q ss_pred hcCCChhHHHHHHHHHHHHhc
Q psy9169 337 LSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 337 l~~~~~~i~~~a~~~L~nl~~ 357 (440)
+.+..-..|..++|+++||+.
T Consensus 442 l~d~~ln~r~KaawtlgnITd 462 (728)
T KOG4535|consen 442 LEDKSLNVRAKAAWSLGNITD 462 (728)
T ss_pred hhhHhHhHHHHHHHHhhhhHH
Confidence 777777899999999999985
No 176
>KOG1820|consensus
Probab=96.28 E-value=0.2 Score=52.68 Aligned_cols=188 Identities=18% Similarity=0.115 Sum_probs=133.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
-+.+-..+.|.++..+.+|+..+...++... ....-...|.+-.++... .+.|-.+...++.+|..|+.........
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 3455666778999999999999998886543 111112245666667766 7888889999999999998765443222
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
...++.|.|+..+......+++.+..++-.++...+- ....+.++..+.+.. +.+...+...+....+..+
T Consensus 333 -~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 333 -YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred -HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcC
Confidence 2247889999999988888888777777666542221 234677777787777 6777776665655555543
Q ss_pred -CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 235 -PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 235 -~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
..........++|.++...++.+.+++..+..+++-+...
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 2334445688999999999999999999999999877643
No 177
>KOG3665|consensus
Probab=96.27 E-value=0.86 Score=47.75 Aligned_cols=196 Identities=18% Similarity=0.201 Sum_probs=120.4
Q ss_pred HHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH--HHHHHhhcCCC-H
Q psy9169 182 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--PLLNQLIHTTD-V 258 (440)
Q Consensus 182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~~d-~ 258 (440)
+|+++....+.....++..|++..+...++.-+..++...+...+.+++....... .......+ ..+-.++..-+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~-~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRE-LLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcchh
Confidence 45677788888889999999999999999977778999999999999997652222 11111111 12223444433 3
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHH-HHHHh
Q psy9169 259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK-MKKLL 337 (440)
Q Consensus 259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~-L~~ll 337 (440)
+.-..++..|+.+....++.... + ....+...-..++....... ..+.....+.. +..++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~----~-----------~r~~~~~~l~e~i~~~~~~~----~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTEC----V-----------FRNSVNELLVEAISRWLTSE----IRVINDRSFFPRILRIL 633 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccc----c-----------chHHHHHHHHHHhhccCccc----eeehhhhhcchhHHHHh
Confidence 66777777777776554421000 0 01122222222233222221 11222223333 55566
Q ss_pred cCC-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q psy9169 338 SSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMA 410 (440)
Q Consensus 338 ~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~ 410 (440)
..+ .+..+..|.|++.+++...++ ++..+.+.|++..+.++-.+. -.++...+..++...
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 544 567899999999999987653 578888999999888864433 556777777776654
No 178
>KOG2956|consensus
Probab=96.26 E-value=0.22 Score=47.99 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=115.7
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 78 EMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 78 ~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
.++..+.+. ..+.+..|+..|..+++...-...+.. -..++..+++.| .+.++.++..|+++|..++...+. .+
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l 365 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RL 365 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hh
Confidence 334444433 456777788888888876642212222 234677788888 448889999999999999865432 22
Q ss_pred Hhc--CCHHHHHHhhCCCCHHHHHHHHHH-HHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 156 INA--NAIPKFLQLLSSPHLNLAEQATWA-LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 156 ~~~--g~i~~L~~lL~~~~~~v~~~a~~~-L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.+. -+|..++..-.+.+.++...|... +.-++...|.. .|..+..++...+ ......++..+..++..
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D-~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTAD-EPRAVAVIKMLTKLFER 436 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCc-chHHHHHHHHHHHHHhh
Confidence 221 245555565566666666555544 44455555543 2333444444433 55666677778888866
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
-....-...+..+.|.+++...+....++..+..+|..+.
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 4222222345788899999999999999999999998876
No 179
>KOG2062|consensus
Probab=96.25 E-value=0.56 Score=47.81 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
...|-+.|..++.-.-+.|...++.+..++... .++.-+..+-.. ++..+.+-..-.|+-+....
T Consensus 451 Ye~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr------- 516 (929)
T KOG2062|consen 451 YEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR------- 516 (929)
T ss_pred HHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------
Confidence 455666665555555555666666665543221 233334444433 33455443333333322221
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+.++=+.+-+++... ++-++...+.++.-=-.+.. ..+++..|++. .++.+.+++..|.-+|+.++..++
T Consensus 517 -qe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 517 -QEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred -hhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 112223333444444 46666666655543222211 13355555555 466788999999999999998888
Q ss_pred hhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 277 DKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
+. ++..|.+|. +-++.||.-|..+||-.|+|..... ++..|-.+..++..-||.-|+.+++-|
T Consensus 588 ~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 588 EQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred hh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 66 788888885 4588999999999999998775321 244555566666667999999999987
Q ss_pred hc
Q psy9169 356 TA 357 (440)
Q Consensus 356 ~~ 357 (440)
.-
T Consensus 652 m~ 653 (929)
T KOG2062|consen 652 MI 653 (929)
T ss_pred HH
Confidence 74
No 180
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.24 E-value=0.13 Score=42.51 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=96.0
Q ss_pred HHhhHHHHHHHhhcCCC------HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHH
Q psy9169 241 KIKICLPLLNQLIHTTD------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGN 312 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~n 312 (440)
+..++++.|+.++.++. .++...++.++..|.++..-.. ..++...+.+++.++..+ +..+...|+.+|-+
T Consensus 8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 44678888888887654 4788889999999998764332 345667788888888654 57899999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
++.+++...+.+.+.=-++.|+..|+.+++.++..|.-.+-.+..+.++
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 9999988777777766799999999999999999998888888765433
No 181
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.21 E-value=0.35 Score=48.58 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHh
Q psy9169 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 208 (440)
Q Consensus 129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ 208 (440)
.++..+..|+..+......-|+..+ .++..++.|..+.+..||.+|+..|-.+|.+++..... +...|++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 4577777888888888777676544 45677888888889999999999999999987665443 4678889
Q ss_pred hhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHH-hccCChhhHH--HH
Q psy9169 209 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALSY-ISDGHNDKIQ--AV 282 (440)
Q Consensus 209 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~-l~~~~~~~~~--~l 282 (440)
+|..++ ..-...+-++|..|...+ ..+.+..+...+. .+|+.++..++..|.. +-.-..+... .-
T Consensus 104 lL~tdd-~~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 104 LLQTDD-PVELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp HTT----HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred HHhccc-HHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 998766 555666667777777654 1334444444443 5677888888877643 2222221111 11
Q ss_pred HhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 283 VDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 283 ~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.+.-++..+.++|.+-...--...+.+|..+-.
T Consensus 175 ~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 222335555566654333223333444454443
No 182
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.17 E-value=0.69 Score=46.51 Aligned_cols=266 Identities=12% Similarity=0.149 Sum_probs=118.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..++++..++|..+|.+|++.|-.++...+ ..+.. ++..|+++|.++++.-...+-++|..+...++.
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k---- 129 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK---- 129 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH----
Confidence 46667777777777777777777765533222 22222 355667777666665555555555555443332
Q ss_pred HHhcCCHHHHHHhhC---CCCHHHHHHHHHHHHHhhC-CCchhHH--HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 155 VINANAIPKFLQLLS---SPHLNLAEQATWALGNIAG-DGARARD--LLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 155 i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~-~~~~~r~--~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+.+..|...+. +.++.+|+.++..|..-.. -.++.-. .-.+.-++..+-.+|.+-+ .+=....+.+|..
T Consensus 130 ----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT-aeEF~l~m~lL~~ 204 (556)
T PF05918_consen 130 ----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT-AEEFELFMSLLKS 204 (556)
T ss_dssp ----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHh
Confidence 23333333333 3456677777766633221 1111000 1111123334444554333 2223334445555
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhh------cCCCHHHHHHHHHHH----HHhccCCh--hhHHHHHhcCChHHHHHhcc
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLI------HTTDVETLSDICWAL----SYISDGHN--DKIQAVVDTGVVPRLVELLD 296 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll------~~~d~~i~~~a~~~L----~~l~~~~~--~~~~~l~~~g~~~~Lv~lL~ 296 (440)
+-... ..........+++.+.+.. ...|++.+...+.++ -.++.+.. ..... +-..++|.+-.+
T Consensus 205 lk~~~-~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y-~~~kvlP~l~~l-- 280 (556)
T PF05918_consen 205 LKIYG-GKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY-MCEKVLPKLSDL-- 280 (556)
T ss_dssp SGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH-HHHHTCCCTT----
T ss_pred Ccccc-ccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH-HHHHhcCChhhC--
Confidence 44421 1122333344555555433 234555444443333 33343222 22222 223456655444
Q ss_pred CCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhc----CC--C----hhHHHHHHHHHHHHhcCChHHHHH
Q psy9169 297 SEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLS----SS--R----VNIVKEAAWTISNITAGNSRQIDH 365 (440)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~----~~--~----~~i~~~a~~~L~nl~~~~~~~~~~ 365 (440)
....+...+.+++.++..... ... ..++.+..+|. .. . ....+...+++.+|+...++....
T Consensus 281 --~e~~kl~lLk~lAE~s~~~~~~d~~-----~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~ 353 (556)
T PF05918_consen 281 --PEDRKLDLLKLLAELSPFCGAQDAR-----QLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF 353 (556)
T ss_dssp -----HHHHHHHHHHHHHTT----THH-----HHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred --ChHHHHHHHHHHHHHcCCCCcccHH-----HHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence 446788889999988864321 122 23344444442 11 1 256777889999999887775554
Q ss_pred H
Q psy9169 366 V 366 (440)
Q Consensus 366 ~ 366 (440)
+
T Consensus 354 l 354 (556)
T PF05918_consen 354 L 354 (556)
T ss_dssp -
T ss_pred H
Confidence 4
No 183
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.07 E-value=0.0094 Score=34.61 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=25.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAG 188 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~ 188 (440)
++|.+++++.+++++||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999874
No 184
>KOG2032|consensus
Probab=96.05 E-value=0.58 Score=45.51 Aligned_cols=145 Identities=10% Similarity=0.016 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHH
Q psy9169 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 248 (440)
.+++..++..|+..|+|.+...|.-.. -.....+..++.-|.++.+.++.-.++.+|..+........-....-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 457789999999999999987443211 1123356777777777777899999999888877554222222233445556
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhhH-HHHHh--cCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 249 LNQLIHTTDVETLSDICWALSYISDGHNDKI-QAVVD--TGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 249 L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~-~~l~~--~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
+..+..+.+++.+..+...++.|+.-..... ..+.+ .+-..+++-.+.++++.+ ..||+.....+.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 7778889999999999888888773221111 11111 122334444456666543 456666665554
No 185
>KOG2956|consensus
Probab=95.95 E-value=0.67 Score=44.77 Aligned_cols=147 Identities=9% Similarity=0.101 Sum_probs=99.3
Q ss_pred ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHH-HHHHhccCChhhHH
Q psy9169 202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICW-ALSYISDGHNDKIQ 280 (440)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~-~L~~l~~~~~~~~~ 280 (440)
++..+++.|....+.....-|+..|..+|.+. +..-+....-++..+++.-.+.++++...|.. ++.-++...+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--
Confidence 56677788877666888999999999999886 44434444555666666666666555555544 344455555532
Q ss_pred HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.+..+..++...+......++.++..++..-+...-..+=..+.|.+++...+....+||.|.++|..+..
T Consensus 407 ------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 ------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 24455555555666677778888888886543222122224689999999999999999999999998874
No 186
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.92 E-value=0.047 Score=38.75 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCC
Q psy9169 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~ 359 (440)
.+.|+|++|++.+.. .....+.+.++++.++++..+. ...+|-.|.++|+-++...
T Consensus 4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 578999999997744 4666677789999999999854 5789999999999887643
No 187
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.79 E-value=0.015 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.8
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 329 GLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
++|.+.+++.++++.+|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999975
No 188
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.72 E-value=0.46 Score=45.90 Aligned_cols=137 Identities=13% Similarity=0.203 Sum_probs=97.7
Q ss_pred HHHHHH-hCCHHHHHHhccC---CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-C---CCHHHHHHHHH
Q psy9169 110 IDELIE-AGVVPICVELLDD---ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-S---PHLNLAEQATW 181 (440)
Q Consensus 110 ~~~ii~-~g~i~~Lv~lL~~---~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~a~~ 181 (440)
...+++ ..+...|...+.+ -.+.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++....-.
T Consensus 98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~ 177 (379)
T PF06025_consen 98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPN 177 (379)
T ss_pred cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHH
Confidence 455666 4555666666633 34678889999999999999999999999999999999998 4 44778888888
Q ss_pred HHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcH------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHH
Q psy9169 182 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248 (440)
Q Consensus 182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 248 (440)
+|+.||-++ ...+.+.+.+.++.+.+++.+.... +.....-..+-.|.|+. |..+......++..
T Consensus 178 ~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~-p~Lk~~i~~~ii~~ 248 (379)
T PF06025_consen 178 VLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH-PSLKPDIIDAIIKI 248 (379)
T ss_pred HHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 999999884 4557888899999999999865422 23344445566677776 43333333333333
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.68 E-value=0.14 Score=42.95 Aligned_cols=146 Identities=9% Similarity=0.083 Sum_probs=90.4
Q ss_pred CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
.+++.|+.+| .+.++.+|.+++++|+.|..-+|...+.+... .+.-. -...+........... ++...+ +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----H
Confidence 3577888888 45678999999999999987766544422211 11000 0111111222222111 111111 3
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
...-..++..|+++|++..-..-...++.++.+++... ..........++|.++..++..+...+...++-|+.|.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l-~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL-GLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-CcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33334467889999887765566667888888888664 33346778899999999999877788887777776654
No 190
>KOG3036|consensus
Probab=95.66 E-value=1.1 Score=39.65 Aligned_cols=145 Identities=11% Similarity=0.067 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-----cCCChHHHHHHHHHHHHHhCCC-cHHHHHHHhcCC
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-----DDENPNTQFEATWALTNIASGT-SEQTMTVINANA 160 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-----~~~~~~i~~~a~~~L~nla~~~-~~~~~~i~~~g~ 160 (440)
.+.-...|+..+..++|.. +....+.++.+--.|-.+| ..+...+|..++.+++.+...+ .+....+...++
T Consensus 92 qsnRVcnaL~LlQcvASHp--dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHP--DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred ccchHHHHHHHHHHHhcCc--chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3445667777777666544 3567788887766666676 2345678999999999997653 455667889999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-------hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL-------GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
||..++.+..+++.-+..|..++..|..+.....-... -...+..++..+.+..+..+.++++.+..+|+.++
T Consensus 170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999998899999999999877543311111 11233344444444445888999999999988764
No 191
>KOG1243|consensus
Probab=95.66 E-value=0.082 Score=53.35 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=129.3
Q ss_pred HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q psy9169 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 193 (440)
.+.+++|.+++++...+..+|..-+.-+-+... .....+++.-++|.+..-+.+.++.+|++++.++..|+.--.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 556799999999999999999877776666653 345667888899999999999999999999999999884311
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH-HHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL-PLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
...+....+..+.++-. +....++.+.+-||+.++....+.. ..+++ .....-+.++-...+..+.+++....
T Consensus 402 -~~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred -hhhhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 12333334455544444 4446788888888887776542221 22222 22333445555567777777776666
Q ss_pred cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 273 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
...+ +.-+...++|.++.+.-+++..++..|..++.....
T Consensus 476 ~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 4433 223456789999999999988899888887765543
No 192
>KOG1243|consensus
Probab=95.63 E-value=0.57 Score=47.57 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=162.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC--hHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN--PNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~--~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
-.++..+...+.+.+..-...|.+.+.. .-+.++...++|.|+..+...+ ..+.. .+..++..... .+
T Consensus 257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld~-~e---- 326 (690)
T KOG1243|consen 257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLDE-EE---- 326 (690)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhccc-cc----
Confidence 3445555666777666666666554322 2267788889999998883333 22222 22223333222 11
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
.+.+++|.|+++++.++..+|-..+.-+-+.... .-..+++..++|.+..-+.+.+ ..++...+.++..|+.--+
T Consensus 327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc
Confidence 5668999999999999988887766666555533 3456777889999999888776 8899999999988886542
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
.. ....+.+..+..+-.+++..++....-+++.++....... .+.-.+.+...-+.++-..-+..+++++....
T Consensus 402 ~~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 402 KR---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hh---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 21 2345666777666666778889888888888886643221 22222334444566666667777777766544
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
...+.. =+...+++.+.-+.-++++.++..|..++...-
T Consensus 476 ~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 476 EYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cccchh---hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 332211 223356777777777777777776666665443
No 193
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.56 E-value=0.63 Score=45.65 Aligned_cols=254 Identities=12% Similarity=0.071 Sum_probs=146.8
Q ss_pred HHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-HH
Q psy9169 96 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LN 174 (440)
Q Consensus 96 ~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~ 174 (440)
..|..++......+....+....+..|+.++.++|+.-|.....+|..+.......+..+. ..+...|..++.... ..
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCccccc
Confidence 3444444332222233355667788999999999999999999999998866555555443 456667777776543 55
Q ss_pred HHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh
Q psy9169 175 LAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 253 (440)
Q Consensus 175 v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll 253 (440)
-...++.+++.+..+-+ ..+.... .-....|+.+.....-.........++..++..+ +. ....++..++..=
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~----l~~~~i~~llk~W 264 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS----LAEPVIKGLLKHW 264 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG----GHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHhC
Confidence 66778888888885422 2222111 1123445555555554556677777777777654 22 1122333333333
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GL 330 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l 330 (440)
-.++..=...-+.-+..+...-+...-.-+...+...+...+.+++..|.+.|+....| +.... ++... ++
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~ 338 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVIL 338 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHH
Confidence 34555544555555555554333221222223457778888889999999988876543 22232 33322 67
Q ss_pred HHHHHHhcCC-----ChhHHHHHHHHHHHHhcCChHH
Q psy9169 331 QKMKKLLSSS-----RVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 331 ~~L~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
|.+...+... +..++..|.-++.-+..-+++-
T Consensus 339 p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 339 PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHH
Confidence 7777766431 4689999999999998876654
No 194
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.55 E-value=0.072 Score=37.85 Aligned_cols=66 Identities=20% Similarity=0.360 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q psy9169 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLG 201 (440)
Q Consensus 134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g 201 (440)
...|+|+++++++. +.....+.+.++++.++++... +...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 45799999999874 5556666678999999999986 4589999999999999977 44445544443
No 195
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.52 E-value=2.8 Score=41.31 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCC----cHHHHHHhCCHHHHHHhc-cC----C--ChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHP----PIDELIEAGVVPICVELL-DD----E--NPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~----~~~~ii~~g~i~~Lv~lL-~~----~--~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
+.+.-...+.++.+++...... ......+..++|.+.+.. .. . ++.+...+..++..+...-+...+.-
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5566667777777776654322 223344555888888877 21 1 24455555566666655433333322
Q ss_pred HhcCCHHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHH
Q psy9169 156 INANAIPKFLQLLS----------S------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL 219 (440)
Q Consensus 156 ~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~ 219 (440)
+ +..+..++. . .......-...+++.+-.+.... .....+..++.+..+..+...+
T Consensus 136 ~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~ 207 (415)
T PF12460_consen 136 I----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSR 207 (415)
T ss_pred H----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHH
Confidence 2 223333332 0 11122223334444443332211 1112567777777766667777
Q ss_pred HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCC----CHHHHHHHHHHHHHhc-cCChhhHHHHHhcCChHHHHH
Q psy9169 220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTT----DVETLSDICWALSYIS-DGHNDKIQAVVDTGVVPRLVE 293 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~----d~~i~~~a~~~L~~l~-~~~~~~~~~l~~~g~~~~Lv~ 293 (440)
..++.+++.+...- +. ......++..+..-+ ... ......-..|+..-+. ++++.. . ..+..|+.
T Consensus 208 ~~~~~~la~LvNK~-~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~ 278 (415)
T PF12460_consen 208 LAALQLLASLVNKW-PD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLE 278 (415)
T ss_pred HHHHHHHHHHHcCC-CC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHH
Confidence 88888888777442 11 113445555555444 222 2344455556555554 333322 2 24778899
Q ss_pred hccCCChhHHHHHHHHHHHhhcCChH--------HHHHHHHc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 294 LLDSEETTILTAALRTVGNIATGNDH--------QTDCVIQA----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 294 lL~~~~~~v~~~al~~L~nl~~~~~~--------~~~~l~~~----g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
+|.+ +.+...|.++++-++...+. .++.+... -++|.|++-....+...+..-..+|+++..+-|.
T Consensus 279 lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 279 LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH
Confidence 9887 46788888888888776332 22223332 3577777777766666888889999999988665
Q ss_pred HHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 362 QIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 362 ~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
++ +...+.+ .++.+..-+..++.++...+..++..+..+.
T Consensus 357 ~v-----------l~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 357 SV-----------LLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HH-----------HHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 31 1122222 3555666668888899999999998887654
No 196
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.51 E-value=1.4 Score=40.24 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=129.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
.|=..|.++|+..|..|+..|..++..-+. ......-+..|+.++ +-.+......++.++..+.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~----~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP----DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH----hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345678899999999999999999876541 223333467777777 3345555555566666665332211111
Q ss_pred HhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 156 INANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
...++..+.+...-+ ....|..+...|..+..+. +..+. ..+.+..+++.+....++.-+-.+...+..+..
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 112223333322222 2567788888888887542 22232 335778888888877778888888777777776
Q ss_pred CCCCCCCHHHHhhHHHHHHHhh----cC--CCH-H-HHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLI----HT--TDV-E-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL 303 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll----~~--~d~-~-i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~ 303 (440)
.-+. ......++..+.-.. .. +|+ . ...+...+|.......+.. ..-++|.|++-|.++.+.++
T Consensus 154 ~~~~---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 154 EFDI---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred hccc---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 6531 111222333222221 11 232 1 2233333333333333322 23458999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q psy9169 304 TAALRTVGNIATGN 317 (440)
Q Consensus 304 ~~al~~L~nl~~~~ 317 (440)
..++.+|...+...
T Consensus 226 ~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 226 LDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999876544
No 197
>KOG1566|consensus
Probab=95.49 E-value=0.85 Score=41.84 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=131.8
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHH-hcCChHHHHhhhCCCC-cHHHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----ARDLLL-GLGTMPQILALVQPNT-PTTFLRNIVWAI 226 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~-~~g~i~~L~~ll~~~~-~~~~~~~a~~~L 226 (440)
..+.++|.+..|+..+..-+-+-+..++.+..|+-+.... ..+++. ...++..|+.- .. .+++.-++...+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 3456789999999999988877777788888877633222 223332 22233333333 22 144444444444
Q ss_pred HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC----hHHHHHhccCCChhH
Q psy9169 227 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV----VPRLVELLDSEETTI 302 (440)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~----~~~Lv~lL~~~~~~v 302 (440)
....+.. .-........-+......+..+.-++..+|..+...+.......+..++..+. .+.--.++.+.+.-.
T Consensus 150 rEcirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 150 RECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 4433332 22222233444555566667777789999999998887655544455544432 333666778888889
Q ss_pred HHHHHHHHHHhhcCCh---HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 303 LTAALRTVGNIATGND---HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~---~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+..++..+|.+..+.+ ..++++-+..-+..++.+|..+...+|-+|..+..-..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 9999999999987544 3455565556799999999999999999999988887775
No 198
>KOG1020|consensus
Probab=95.48 E-value=0.46 Score=52.17 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=114.0
Q ss_pred HHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169 219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298 (440)
Q Consensus 219 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~ 298 (440)
..++.|....++...+- ......++..++..+..+...++..|+.+|+.+...++.. +....+-..+-.-+.+.
T Consensus 794 ~~~a~li~~~la~~r~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred chhHHHHHHHHHhhhHH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccc
Confidence 34566666666655411 1123456777778888888999999999999999887733 22223334444445667
Q ss_pred ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHH
Q psy9169 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALL 378 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~ 378 (440)
...|+.+|+..+|..+...++..... ++.+..-+.+..-.||+.+...+.-||...++.-... +..+.+
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~------~~cakm 936 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV------DMCAKM 936 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH------HHHHHH
Confidence 78999999999999988877655533 4456665556667899999999999998776531100 011111
Q ss_pred HHHcCcHHHHHHHhcCCcHH-HHHHHHHHHHhhCCCCccc
Q psy9169 379 VEESGGLEKLEALQHHENET-VYQKCYKIISMAFNDSAEN 417 (440)
Q Consensus 379 l~~~g~l~~l~~L~~~~~~~-v~~~a~~il~~~~~~~~~~ 417 (440)
| .=. ++.++ |++.+.....++|-.+..+
T Consensus 937 l----------rRv-~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 937 L----------RRV-NDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred H----------HHh-ccchhHHHHHHHHHHHHHhccCCCc
Confidence 1 111 33344 9999999999988766544
No 199
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.26 E-value=0.54 Score=44.03 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=115.0
Q ss_pred CCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 159 NAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 159 g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
+.+..|+ ..+++.++.+|+.++.+||-.|--+.... ...++.+...+..+ +..++..++.++..+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 67788889999999999999995543321 22467777888555 58999999999998775432111
Q ss_pred -C-------HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC----ChhHHHH
Q psy9169 238 -D-------FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE----ETTILTA 305 (440)
Q Consensus 238 -~-------~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~----~~~v~~~ 305 (440)
. ......++..+...+.+.+++++..++..++.|.-...-.. ...++..|+-+.-++ +..++.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 11235678888899999999999999999999875433221 123455665555443 3455555
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 341 (440)
Q Consensus 306 al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~ 341 (440)
-..++-..+..++.+.. .+...+++.+..+...+.
T Consensus 176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 55666777777776654 555568888888777643
No 200
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.25 E-value=0.073 Score=44.55 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=96.9
Q ss_pred hHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169 203 MPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 281 (440)
Q Consensus 203 i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~ 281 (440)
++.++..+.. ..+.+++..++-++..+-.. ........+-..+..++...+.+-...++.++..+-...++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3444444443 44467888888888887411 111122334445555565555567788888888888888877666
Q ss_pred HH-hcCChHHHHHhcc--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChh-HHHHHHHHHHH
Q psy9169 282 VV-DTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVN-IVKEAAWTISN 354 (440)
Q Consensus 282 l~-~~g~~~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~-i~~~a~~~L~n 354 (440)
++ ..|+++.++.++. ..+..++..++.+|..-| .+...+. .+...++++|..++.. ++.. +|..|+-+|+-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 55 5699999999998 677888889999887644 4444444 4445689999999964 4455 78888877764
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.15 E-value=1.2 Score=39.96 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhh-------CCCC-cH---HHHHHHHHHHHhhhhCCCCCCCH
Q psy9169 172 HLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALV-------QPNT-PT---TFLRNIVWAISNLCRNKNPAPDF 239 (440)
Q Consensus 172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll-------~~~~-~~---~~~~~a~~~L~~l~~~~~~~~~~ 239 (440)
+++.|+.|+.-|+.--...+...-.+. ..|.+..|++=+ .... .. .-+.+++..+-.++.++ .....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp-etr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP-ETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T-TTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh-HHHHH
Confidence 467788888777776655555544444 345555554322 2211 12 22344445555677765 33333
Q ss_pred HHHhhHHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 240 EKIKICLPLLNQLIHTTD-----VETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~~~d-----~~i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
.....+.-.|..+|+..+ +.++..++++++.+... +.+.+..+++.+++|..+..+..++.--+..|..++..|
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555666665432 57889999999999964 457788899999999999999998888888999999988
Q ss_pred hcCCh---------HHHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169 314 ATGND---------HQTDCVIQAGGLQKMK-KLLSSSRVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 314 ~~~~~---------~~~~~l~~~g~l~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~ 360 (440)
...+. +....+. .++..++ .+...+++.+-+.+.++-..++.+..
T Consensus 167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 65432 2111111 1333333 45566788999999999999987653
No 202
>PRK14707 hypothetical protein; Provisional
Probab=95.07 E-value=5.5 Score=45.94 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=147.1
Q ss_pred cCCCh-HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q psy9169 127 DDENP-NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 205 (440)
Q Consensus 127 ~~~~~-~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~ 205 (440)
+-++. .....+.++-..++ ..+..++.+-..++-..|-.+-+-++..+...|...|..=-.+.+..+..+- .-.+..
T Consensus 258 Kwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~ 335 (2710)
T PRK14707 258 KWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLST 335 (2710)
T ss_pred cCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHH
Confidence 43443 44444444444454 3345444444444444444444557766766666666554445566543332 233444
Q ss_pred HHhhhCCCCcHHHHHHHHHHH-HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 206 ILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 206 L~~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
.++.|....+..+-+.+..+| ..++.+.. ..+-....++-..|..+-+-++..+...+...|..=..++.+....+--
T Consensus 336 ~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~-l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~ 414 (2710)
T PRK14707 336 ALNALSKWPDNPVCAAAVSALAERLVADPE-LRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP 414 (2710)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHhccCHh-hhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch
Confidence 555555443334444444444 45665542 2222223344444444445567677777777666555566666555444
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 364 (440)
.|+-..|-.+-+=++..++..+...|.--+..+.+..+.+--.++...|-.+-+-++..+...|+-.|.-=.....+.
T Consensus 415 Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l-- 492 (2710)
T PRK14707 415 QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRL-- 492 (2710)
T ss_pred hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHH--
Confidence 455555555556678888888888888777777766665544556666666667788888888777777655544433
Q ss_pred HHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408 (440)
Q Consensus 365 ~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 408 (440)
++.+.-.+....|..|-..++...+..|...|.
T Consensus 493 -----------~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA 525 (2710)
T PRK14707 493 -----------RKALKPQEVVIALHSLSKWPDTPICAEAASALA 525 (2710)
T ss_pred -----------HhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 333333444555666666666555555544443
No 203
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.04 E-value=0.14 Score=51.62 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=99.9
Q ss_pred hHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCCh
Q psy9169 244 ICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGND 318 (440)
Q Consensus 244 ~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~ 318 (440)
.+-|.+.+...+ +|++++..|.-+|..+.+-+.+... .-+|.|+..|. +++|.++..|.-.+|.++....
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555566544 7899999999999888765543322 23899999996 8999999999999998876544
Q ss_pred HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHH
Q psy9169 319 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENET 398 (440)
Q Consensus 319 ~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~ 398 (440)
..++.. -..|.+-|.+.+..+++.+..++.++.-.. .+.--|-+..+..++..++.+
T Consensus 967 ~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag------------------q~KVKGqlg~ma~~L~deda~ 1023 (1128)
T COG5098 967 TTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG------------------QLKVKGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred hhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc------------------ceeeccchhhhHhhccCCcch
Confidence 333322 356778888888999999999999986322 122235566667777777888
Q ss_pred HHHHHHHHHHhhCC
Q psy9169 399 VYQKCYKIISMAFN 412 (440)
Q Consensus 399 v~~~a~~il~~~~~ 412 (440)
|..+|.-....+..
T Consensus 1024 Isdmar~fft~~a~ 1037 (1128)
T COG5098 1024 ISDMARHFFTQIAK 1037 (1128)
T ss_pred HHHHHHHHHHHHHh
Confidence 87777666655543
No 204
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.00 E-value=1.4 Score=43.16 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=134.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
-+..|+.++.|+|+..|......+.++...-. .....+...+...|.+++ ....+....+.+.+++.+..|-..--.
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 46778888999999999999999988876443 356777777888899999 677778888999999999876331111
Q ss_pred HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.-...-....|+.|.+.+. .....+...++..+...++..-..+ +..|++.=-..+ ..-..-.+.-+..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~-s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTN-SQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCC-chhHHHHHHHHHHHHHh
Confidence 1011112344455555555 3344555666666665445442222 222333222222 22223333344444443
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhcc-----CCChhHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLD-----SEETTILT 304 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~-----~~~~~v~~ 304 (440)
-++..-......++..+..++.+.+..|...|+..+.+ + ..-.++.. .++|.+..-|. |-+..|+.
T Consensus 286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 31111112335677788888899998888888765522 1 11112211 24666666653 33678999
Q ss_pred HHHHHHHHhhcCChHHHH
Q psy9169 305 AALRTVGNIATGNDHQTD 322 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~ 322 (440)
.|..++.-+...++...+
T Consensus 360 ~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH
Confidence 999999988877765433
No 205
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.94 E-value=0.093 Score=39.33 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=65.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+...+..|+++.+.+|-.|+..|++++.... ....-..+++..+...|+++++-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 46778889999999999999999999987654 12222356788888999999999999999999999976554
Q ss_pred HHhcCCHHHHHHhhCC
Q psy9169 155 VINANAIPKFLQLLSS 170 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~ 170 (440)
.+++.|+....+
T Consensus 77 ----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ----EVLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHHhC
Confidence 345666555443
No 206
>KOG1967|consensus
Probab=94.80 E-value=0.59 Score=48.81 Aligned_cols=186 Identities=16% Similarity=0.156 Sum_probs=125.8
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH-------------HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQ-------------TMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~-------------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 185 (440)
...|+++|+. |++-..++.++.-+..+++.. ++.+ =..++|.|+..........+..-+.+|.+
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf-F~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF-FCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH-HHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 4456666643 444445555565555554322 2222 24689999999986666677777888888
Q ss_pred hhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC---HHH
Q psy9169 186 IAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---VET 260 (440)
Q Consensus 186 l~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d---~~i 260 (440)
+..+-|. ..+. -...+|.|++.|.-.+ ..++..+..++.-+.... +.........++|.+..+=.++| ..+
T Consensus 894 Vl~~vP~--~vllp~~~~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 894 VLTNVPK--QVLLPQFPMLLPLLLQALSMPD-VIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHhcCCH--HhhccchhhHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence 8876554 3333 2345677777776555 677778888887766554 44455566788898888776655 578
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
+..|+.++..|+..-+...-.-....++..|.+.|.++.--||..|.++=+
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 999999999999844433233344567899999999998889999988643
No 207
>KOG2025|consensus
Probab=94.58 E-value=2.3 Score=43.38 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~ 296 (440)
.+++-+...+..+-..+ .....+.+++..++....+.+..++-.+|..|..+.....+. ...+-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d---~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLD---KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccC---chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh
Confidence 34444444444443332 344466788888888888899999999999999999754433 33333566777888888
Q ss_pred CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHH
Q psy9169 297 SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTIS 353 (440)
Q Consensus 297 ~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~ 353 (440)
+..+.|+..|+.+|+.+-....+. +..+...+..++++ +++.+|+.|...|+
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999986321111 12356667777775 56788887644433
No 208
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.63 Score=46.05 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=99.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN 157 (440)
Q Consensus 79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~ 157 (440)
+-+++.+.|+..+..++..+.--..+.. +.|++..|++.- .+.+.+++..|+.+|+-+|..++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 4455667778888887777765444444 237888888884 88899999999999999988754
Q ss_pred cCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 158 ANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 158 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
..++..+++|.. .+.-||.-.+.+||-.|...-.. -++..|-.++.+.. .-++..|+-+++-+....++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTN-DFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcH-HHHHHHHHHHHHHHHhhcCcc
Confidence 456667777765 45889988888998877543211 12444445554444 566777777777776554333
Q ss_pred CCHHHHhhHHHHHHHhhcC
Q psy9169 237 PDFEKIKICLPLLNQLIHT 255 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~ 255 (440)
.. ..+.++...+..++..
T Consensus 656 Ln-p~v~~I~k~f~~vI~~ 673 (926)
T COG5116 656 LN-PNVKRIIKKFNRVIVD 673 (926)
T ss_pred cC-hhHHHHHHHHHHHHhh
Confidence 22 2345566666666644
No 209
>KOG2137|consensus
Probab=94.48 E-value=1.1 Score=45.63 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH
Q psy9169 86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 165 (440)
Q Consensus 86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~ 165 (440)
.|+..+..-...|.+++..-+ ..+....++|.|++.|.+ ...+-..+-.+..|+.+.+ ........+|.|.
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp----~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~ 355 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFP----ARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALK 355 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCC----HHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence 456666666667777764332 455566788888888732 1222222222333333211 1222345667777
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169 166 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245 (440)
Q Consensus 166 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 245 (440)
..++.++. .+..+.++-|+-.--......-+...++|.|..-++..+ ..++..++..+..++..-+ -......+
T Consensus 356 pi~~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD---~~~vk~~i 429 (700)
T KOG2137|consen 356 PIYSASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID---VPFVKQAI 429 (700)
T ss_pred HHhccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc---HHHHHHHH
Confidence 77764321 111122222221000011122233456777777776666 8889999998888886642 22344667
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169 246 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 324 (440)
Q Consensus 246 ~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l 324 (440)
+|.|..+. .+++..++.+++.++..+...-+ ...-...+..+.+.....++.+....+++..++....... +.+
T Consensus 430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD----~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev 504 (700)
T KOG2137|consen 430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD----KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEV 504 (700)
T ss_pred HHHhhcchhcccchHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eee
Confidence 88887664 46788999999999999983221 1111123445555556678888888888888877654433 345
Q ss_pred HHcCCHHHHHHHhcCCC
Q psy9169 325 IQAGGLQKMKKLLSSSR 341 (440)
Q Consensus 325 ~~~g~l~~L~~ll~~~~ 341 (440)
+-..++|.++.+...+.
T Consensus 505 ~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 505 MAENVLPLLIPLSVAPS 521 (700)
T ss_pred ehhhhhhhhhhhhhccc
Confidence 55678888888887664
No 210
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.45 E-value=5.1 Score=38.81 Aligned_cols=264 Identities=14% Similarity=0.148 Sum_probs=141.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHhCCHHHHHHhc----cC-------CChHHHHHHHHHHHHHhCCCcH
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPP-IDELIEAGVVPICVELL----DD-------ENPNTQFEATWALTNIASGTSE 150 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~i~~Lv~lL----~~-------~~~~i~~~a~~~L~nla~~~~~ 150 (440)
|.+.+...+..|-..|.+.+....+.+ ...+.+ -++.|++++ .+ .+..+..+|+.+|+.+..+ ++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~ 78 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PE 78 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HH
Confidence 345667778888877877776554333 333322 245555544 12 3567888999999998854 44
Q ss_pred HHHHHHhcC---CHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---C-CCcHHHHHH
Q psy9169 151 QTMTVINAN---AIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P-NTPTTFLRN 221 (440)
Q Consensus 151 ~~~~i~~~g---~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~-~~~~~~~~~ 221 (440)
....+-+.- .+...+..+.+++ ..+...++|+|..=--. ..++....+..++..+. + -.+..+...
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 333332221 3455566665544 56777888888753322 22333344444544443 2 234678888
Q ss_pred HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc--cCCh-hhH---HHHHhc----C-----
Q psy9169 222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS--DGHN-DKI---QAVVDT----G----- 286 (440)
Q Consensus 222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~--~~~~-~~~---~~l~~~----g----- 286 (440)
.+.++.+|.... |..-......-+|.++..+-+....++..|...+..+. -+.. ... ....+. +
T Consensus 154 rL~i~~~ll~q~-p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~ 232 (372)
T PF12231_consen 154 RLNIYKRLLSQF-PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQL 232 (372)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHH
Confidence 888888888765 32222233446788777776666666666555444433 1111 111 111222 2
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+.+.|..++.+.+.....+-+|..--+..+.+. ..-..+ ...+...-..+.++++.+|.+|..+=..++
T Consensus 233 ~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 233 YCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334466666663333333334433322223321 001111 134555566777888888888755544443
No 211
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.26 E-value=9.6 Score=44.29 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCC--CcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCH
Q psy9169 85 SSNPKMRMIATRSARKMLSKERH--PPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAI 161 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~--~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i 161 (440)
+.+..+...|+..|+.+...--. +....-.+...+.+|..++ .+.+.+++...+.++.++..... .-+..| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 44677888888888877543211 1111223456788888888 77788999999999999874322 222333 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCC----hHHHHhhhCCCCcHHHHHHHHHHHHhh--
Q psy9169 162 PKFLQLL----SSPHLNLAEQATWALGNIAGDGARARDLLLG--LGT----MPQILALVQPNTPTTFLRNIVWAISNL-- 229 (440)
Q Consensus 162 ~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~----i~~L~~ll~~~~~~~~~~~a~~~L~~l-- 229 (440)
+.+..++ .+.++.+.+.|..++..|+.+.- ..+.. .+. |..|..+.....+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 3333333 35568888888888887774411 10100 122 333333333322222222333333322
Q ss_pred --hhCCC------------------------C----CCCH---HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-
Q psy9169 230 --CRNKN------------------------P----APDF---EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH- 275 (440)
Q Consensus 230 --~~~~~------------------------~----~~~~---~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~- 275 (440)
..+.. . .... ...-.++..|..+..+.+++|+..|+.+|..+....
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 11100 0 0000 111233334445566788999999999998776332
Q ss_pred ----hhhHHHHHhcCChHHHHHhccCC------------------C--------hhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169 276 ----NDKIQAVVDTGVVPRLVELLDSE------------------E--------TTILTAALRTVGNIATGNDHQTDCVI 325 (440)
Q Consensus 276 ----~~~~~~l~~~g~~~~Lv~lL~~~------------------~--------~~v~~~al~~L~nl~~~~~~~~~~l~ 325 (440)
++....+.. +++-+++..+++. + .+....|++.+.++.+..-+....++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333332 4566665554321 0 12333455555555444333333343
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-----ChHHHHHHhh
Q psy9169 326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-----NSRQIDHVIQ 368 (440)
Q Consensus 326 ~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-----~~~~~~~~i~ 368 (440)
+ +++..|..++..++..+.+.++-+|.++... +++++..+++
T Consensus 1459 ~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred H-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 3 5666777777778888999999999988742 5666666654
No 212
>KOG2137|consensus
Probab=94.23 E-value=0.4 Score=48.75 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=101.0
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
...++|.|..-+++.+..+++.++..+..++..-+ -..+..-++|.|..+.....+..++.+++-|+..+...-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 44678888888889999999999999999884322 234455678888888767777899999999999988432
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCCh
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 300 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~ 300 (440)
+.....+.++.+....+..|+.+......+...+....... ..++...++|.++.+...+.-
T Consensus 461 -D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 -DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred -HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 22333455666667777889999999888888887655543 455667889999988876653
No 213
>PRK14707 hypothetical protein; Provisional
Probab=94.19 E-value=13 Score=43.09 Aligned_cols=280 Identities=14% Similarity=0.095 Sum_probs=142.7
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-c-CCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 76 VPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-D-DENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 76 i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~-~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
+..+++.++ .++..-+..+ ..|...++.+. .....+-..| |-.++.-+ + .+++..+..+...-..++.. +..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa-~~la~~~~~~d-~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVA-PRFAALVASDD-RLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADE-SRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHH-HHHHHHhcCCh-hhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHH
Confidence 445555554 3334444333 33333443332 2233332233 44444444 3 44555555444444444543 444
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH-hh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS-NL 229 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~-~l 229 (440)
+..+-..|+-..|-.+-+=++..+..+++.+|. .++.+ +..+..+-.. .+...++-|....+..+-+.++..|. .|
T Consensus 241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 444444444444444444466555555555554 44433 5554443322 23334444444443555554444444 34
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
.... .........++-..|..+-+-.|..+...+..+|..=...+++..+.+--.|+-..|-.+-+=++..++..|...
T Consensus 319 ~~d~-~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDP-ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccH-hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 4432 111111112222333333344565555555555544444455454544434544444444455777788888888
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
|..=..++++..+.+--.|+-..|-.+-+-++..+...++.+|.--.+...+.
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHH
Confidence 87777778777776655666666666777788888888888888776665543
No 214
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=8.1 Score=39.94 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=131.5
Q ss_pred hCCHHHHHHhc-cC-------CChHHHHHHHHHHHHHhC--CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169 116 AGVVPICVELL-DD-------ENPNTQFEATWALTNIAS--GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185 (440)
Q Consensus 116 ~g~i~~Lv~lL-~~-------~~~~i~~~a~~~L~nla~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 185 (440)
.|+++.++..| ++ +++.-.+-|++.+.++.+ ........+++.-+++.++..++++..-++..||..++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 48899999998 21 122334557777777765 223334455666678888888899888899999999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHh---hHHHHHHHhhcCCCHHHHH
Q psy9169 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK---ICLPLLNQLIHTTDVETLS 262 (440)
Q Consensus 186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~ll~~~d~~i~~ 262 (440)
+..+ .++..+-..+.+...+.+.+.. ..+...|+-++.-+..+.. ....... +.++.|..+-+.-+.++..
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl~nn~-lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCLKNNH-LPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 9533 4455555566777778888755 7788888889888887752 2222222 3333333333444445555
Q ss_pred HHHHHH-HHhccCChhhHHHHHh---cCChHHHHHhccCCC------hhHHHHHHHHHHHhhc------CChHHHHHHHH
Q psy9169 263 DICWAL-SYISDGHNDKIQAVVD---TGVVPRLVELLDSEE------TTILTAALRTVGNIAT------GNDHQTDCVIQ 326 (440)
Q Consensus 263 ~a~~~L-~~l~~~~~~~~~~l~~---~g~~~~Lv~lL~~~~------~~v~~~al~~L~nl~~------~~~~~~~~l~~ 326 (440)
.+...+ .+.+..-......+.. ...+.....++..++ .+-+..|.++|..+.+ ..+...+. +.
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le 639 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LE 639 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HH
Confidence 555443 2333222111111111 011222233333321 1234445555544432 22222222 23
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 327 ~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
....|.+--++.+...+.-.+|+-.|-+.+-
T Consensus 640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 640 VSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 3456666666666666777777777766653
No 215
>KOG2032|consensus
Probab=94.12 E-value=6.3 Score=38.63 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=135.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcH--HH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSE--QT 152 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~--~~ 152 (440)
+..+.....+++...+-.|+..|.+.++.-+ ....-...-.+..++.-| ...+.+++.+++.+|+.+...-.. ..
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P--~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAP--DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCc--HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 3344445567778899999999999988733 111112233455555555 667789999999999988743111 11
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
..+ .++.-.+..+..+.+++++..+...++.++... ...++.+. ..+...+++-.|.+.. + ....||......
T Consensus 338 ~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p-~va~ACr~~~~~ 413 (533)
T KOG2032|consen 338 SYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-P-YVARACRSELRT 413 (533)
T ss_pred hhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-h-HHHHHHHHHHHh
Confidence 111 134445677778888999999998888887221 11222222 1223334444444444 3 334455554444
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHH---HHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHH
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD---ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~---a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~a 306 (440)
|.- .........+++... ..+.. ... .-|+ ..+....++....+ ......++++.-+.++..|
T Consensus 414 c~p---~l~rke~~~~~q~~l----d~~~~-~~q~Fyn~~c-~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aa 479 (533)
T KOG2032|consen 414 CYP---NLVRKELYHLFQESL----DTDMA-RFQAFYNQWC-IQLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAA 479 (533)
T ss_pred cCc---hhHHHHHHHHHhhhh----HHhHH-HHHHHHHHHH-HHHhhhCHHHHHHH-----HHhchhheecchHHHHHHH
Confidence 422 111222233333222 11110 111 1111 11222222222221 1222233344445677777
Q ss_pred HHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 307 LRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 307 l~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
...-++..-+-........+ ..+...+..+...+-+++++.|..++.-+.
T Consensus 480 vl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 480 VLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 77777766543333222222 234455666677778899988888876654
No 216
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.12 E-value=0.34 Score=40.51 Aligned_cols=146 Identities=15% Similarity=0.157 Sum_probs=97.8
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+..++..|. ...++++..++-++.+++... ..-...-+-..+-..+.....+-...++.+++.+-...++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555555 366788888888888886211 1222222233333334555555777889999999888888777
Q ss_pred HHH-hcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH-HHHHHHHHHHh
Q psy9169 154 TVI-NANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT-FLRNIVWAISN 228 (440)
Q Consensus 154 ~i~-~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~-~~~~a~~~L~~ 228 (440)
.+. ..|.++.++.++. ..+..+...++.+|..=|.+ ..+|..+.+ .+++.|-.+++.+.+.. ++..++-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 554 6688999999998 67788888888888877766 677666655 46899999997666455 66666666543
No 217
>KOG2611|consensus
Probab=93.99 E-value=4.3 Score=39.60 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=95.4
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCCCc---HHHHHHHhcCCHHHHHHhhCCCC-------HHHHHHHHHHHHHhhCCCc
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDGA 191 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~---~~~~~i~~~g~i~~L~~lL~~~~-------~~v~~~a~~~L~nl~~~~~ 191 (440)
+..++...+.+-|+.|+...+..+.+.. ..++.+.+.-+.+.+-++|.+.+ .-.+..++..|.-+|.+ |
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-p 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-P 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-h
Confidence 5556677778889999999999886533 45567888888999999997633 23456677788888866 3
Q ss_pred hhH--HHHHhcCChHHHHhhhCCCCcH------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC
Q psy9169 192 RAR--DLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT 256 (440)
Q Consensus 192 ~~r--~~i~~~g~i~~L~~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 256 (440)
+.. ..++ ..||.|+.++....++ .+...+..+|..++... +.....+..|.++.+.++-.-.
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCC
Confidence 321 2233 4589999999855443 48889999999999885 7777777889999998776443
No 218
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=7 Score=40.38 Aligned_cols=276 Identities=14% Similarity=0.088 Sum_probs=150.6
Q ss_pred cCCHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhcC-CCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHH
Q psy9169 73 KMTVPEMIEGMK-----SS---NPKMRMIATRSARKMLSK-ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTN 143 (440)
Q Consensus 73 ~~~i~~lv~~L~-----s~---~~~~~~~a~~~l~~lls~-~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~n 143 (440)
+..++-+...|. ++ ++....-|++.+.++.+. ..+.+...+.+.=+++.++..++++.--++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 345566666662 11 223333455666655541 222455666666678888888888888899999999999
Q ss_pred HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCCcHHHHHH
Q psy9169 144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNTPTTFLRN 221 (440)
Q Consensus 144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~ 221 (440)
+.. +.....+-..+.+....+|++++-.|+-+|+-+|.-+..+. .....+.+ -+.++.|+.+-+.- +.+....
T Consensus 487 ~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~f-eiD~LS~ 561 (970)
T COG5656 487 IEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTF-EIDPLSM 561 (970)
T ss_pred HHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccc-cchHHHH
Confidence 843 34444445567788888999888888888999998888664 22233222 12333333333222 2444444
Q ss_pred HHHHHHh-hhhCCCCCCCHHHHhhHHH----HHHHhhcCC-C-----HHHHHHHHHHHHHhc---c---CChhhHHHHHh
Q psy9169 222 IVWAISN-LCRNKNPAPDFEKIKICLP----LLNQLIHTT-D-----VETLSDICWALSYIS---D---GHNDKIQAVVD 284 (440)
Q Consensus 222 a~~~L~~-l~~~~~~~~~~~~~~~~~~----~L~~ll~~~-d-----~~i~~~a~~~L~~l~---~---~~~~~~~~l~~ 284 (440)
+...+.. .+..-.| -.......++. ....++..+ | .+-...|.+.|..+. - ..+.. -.-+.
T Consensus 562 vMe~fVe~fseELsp-fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~v-Lk~le 639 (970)
T COG5656 562 VMESFVEYFSEELSP-FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLV-LKYLE 639 (970)
T ss_pred HHHHHHHHhHHhhch-hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHH-HHHHH
Confidence 4444332 2222111 11111222222 333333222 1 122333333333322 1 11111 11123
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHHHHhc
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV-NIVKEAAWTISNITA 357 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~-~i~~~a~~~L~nl~~ 357 (440)
....|.+--.|.+.-.++-.+|+..+-+.+....+-... .-|+.+.+.+++.++.. ....+++-++.|+..
T Consensus 640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 344555555567776778888888887765543332222 23677777777777663 667888899999773
No 219
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.94 E-value=0.86 Score=46.21 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=115.9
Q ss_pred HhcCCCHHHHHHHHHHHHH--HhcCCCCCcHHHHHHhCCHHHHHHhccC----CChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 82 GMKSSNPKMRMIATRSARK--MLSKERHPPIDELIEAGVVPICVELLDD----ENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 82 ~L~s~~~~~~~~a~~~l~~--lls~~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
.+...+.+....|...++. ++-++ .-+-+..-|.+.+...+ +++.+|..|..+|..+..-+.+...
T Consensus 861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-- 932 (1128)
T COG5098 861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-- 932 (1128)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 4445555555566555542 22111 11223445555555533 7899999999999988665444322
Q ss_pred HhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 156 INANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 156 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
.-+|.|+..+. +++|.+|.+|+-.||.+.---....+ ..-..|.+-|.+.+ ..+++.|..++.+|.-..
T Consensus 933 ---ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLyrrL~De~-~~V~rtclmti~fLilag- 1002 (1128)
T COG5098 933 ---EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLYRRLGDED-ADVRRTCLMTIHFLILAG- 1002 (1128)
T ss_pred ---HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHHHHhcchh-hHHHHHHHHHHHHHHHcc-
Confidence 45788999887 78899999999999887632111111 12344555555444 789999999999988654
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
...+.|-++.++.+|.++|.++..-|-..+..++..+.
T Consensus 1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 13357788999999999999998888888888886554
No 220
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.83 E-value=4.8 Score=36.16 Aligned_cols=203 Identities=18% Similarity=0.154 Sum_probs=120.5
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
+|.|+.-+ +..+++++...+.+|..++....... .-++..|..+...+.......+...+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 45555545 78899999999999999997752211 2345667777777777766667777777765543221
Q ss_pred HhcCChHHHHhh---------hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHH
Q psy9169 198 LGLGTMPQILAL---------VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWA 267 (440)
Q Consensus 198 ~~~g~i~~L~~l---------l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~ 267 (440)
+.+..++.. .......+.......++..+|... |. .-..+++.+..++ ++.++.+...++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334433333 111222445555567888899876 32 4466888888888 78888999999999
Q ss_pred HHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCCh
Q psy9169 268 LSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRV 342 (440)
Q Consensus 268 L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~ 342 (440)
+..++...--... ..-..+.+-|..+ .+.+....+..++.+..+.-+ ..-......++..+-++..+.+.
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 9999943321111 1233344444333 345555444444444333211 11122334566667776666553
No 221
>KOG2025|consensus
Probab=93.77 E-value=2.8 Score=42.84 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=79.2
Q ss_pred hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
.|.+..++....+.+..+|+.++.+|..+.....+ ....+-.++...+..=+.+..+.||.+|+.+|+.+-++...-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 35566666666788889999999999999864333 344444577777888888888999999999999998542111
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
+..++..+..+++++.++++++.++..+.
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23567889999999888999998755443
No 222
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.68 E-value=8.5 Score=38.55 Aligned_cols=249 Identities=14% Similarity=0.121 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCCh---HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENP---NTQFEATWALTNIASGTSEQTMTVINANAIP 162 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~---~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~ 162 (440)
..+.|..+...+..++....... ...+ ..+...+ ....+ ..+.+|+.+|++ +..+. ...+.++.+
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~--~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~---~Grdi--~~~~~~i~~ 110 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSS--GLMR----AEFFRDISDPSNDDDFDLRLEALIALTD---NGRDI--DFFEYEIGP 110 (464)
T ss_pred CHHHHHHHHHHHHHHHHcccccc--HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHc---CCcCc--hhcccchHH
Confidence 46778888888887776544210 1111 1223333 33333 355666665554 32222 224567777
Q ss_pred HHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169 163 KFLQLLSSP---------------------------HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 215 (440)
Q Consensus 163 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~ 215 (440)
.|...|..- +.......+..+.|+...+...-+.-.-.+++..++.+......
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 777666311 22334455566666665544332333334556666666555554
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
....+.++..+-.+..... .+......++..|....... .....+..++.+|+...... ..+..|..+|
T Consensus 191 ~~di~~~L~vldaii~y~~--iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL 259 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGD--IPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDIL 259 (464)
T ss_pred HHHHHHHHHHHHHHHHcCc--CChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHH
Confidence 5556666666666655432 22233444555554443322 56666777888888644322 2366777888
Q ss_pred cC------CChhHHHHHHHHHHHhhcCChHHHHHHHHc---CCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 296 DS------EETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 296 ~~------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.. .+..+..-|+..++.+..+..+....-+.. -+++.|...++.+++.+-.+....+.++..
T Consensus 260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 32 234577789999999988773322222222 278888888988888787788888877773
No 223
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.68 E-value=0.74 Score=39.77 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhc--CC--hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH--cCCHH
Q psy9169 258 VETLSDICWALSYISDGHNDKIQAVVDT--GV--VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ--AGGLQ 331 (440)
Q Consensus 258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~~--g~--~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~--~g~l~ 331 (440)
..-......++.|++.....+ +.+++. +. +..|+.++.+.+..-+.-++.+|.|+|...+.+...+-+ .++++
T Consensus 72 ~~~~~yla~vl~NlS~~~~gR-~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp 150 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQLPEGR-QFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILP 150 (192)
T ss_pred CcchhHHHHHHHHhcCCHHHH-HHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHH
Confidence 445677788899999877655 556554 34 788888888887666778999999999887766443332 24555
Q ss_pred HHHHHhc
Q psy9169 332 KMKKLLS 338 (440)
Q Consensus 332 ~L~~ll~ 338 (440)
.|+--+.
T Consensus 151 ~LLlPLa 157 (192)
T PF04063_consen 151 YLLLPLA 157 (192)
T ss_pred HHHhhcc
Confidence 5555444
No 224
>KOG2611|consensus
Probab=93.67 E-value=7.6 Score=38.00 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHHHHHHhccC-----CCh--HHHHHHHHHHHHHhC
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDD-----ENP--NTQFEATWALTNIAS 146 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~~Lv~lL~~-----~~~--~i~~~a~~~L~nla~ 146 (440)
......++...+.+.|+.|+-...+......... ...+.++-+.+.+-++|.+ +-| -.+.-++.+|+..|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 3446677778888899999999998876554222 4457777778888888832 122 244556677777776
Q ss_pred CCcHHHH--HHHhcCCHHHHHHhhCCCC-------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH
Q psy9169 147 GTSEQTM--TVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT 217 (440)
Q Consensus 147 ~~~~~~~--~i~~~g~i~~L~~lL~~~~-------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~ 217 (440)
. ++... .++ +.||.|..++.... ..+.+.+..+|..+++. +.....++..|+++.+.++-.-.+-..
T Consensus 93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCch
Confidence 5 33222 333 67899999997522 23788999999999988 445577888999999997765322111
Q ss_pred HHHHHHHHHH----hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169 218 FLRNIVWAIS----NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 271 (440)
Q Consensus 218 ~~~~a~~~L~----~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l 271 (440)
-..-++..+. .+-.++. .......++..+..=+...+....-..|..|..+
T Consensus 169 d~alal~Vlll~~~~~~cw~e---~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSE---TIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcC---CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1111111111 1222221 1222223344444444455666777788887743
No 225
>KOG1832|consensus
Probab=93.66 E-value=2.6 Score=44.17 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHh----c---CChHHHHHhcc----CCChhHHHHHHHHHHHhhcCChHHH-----
Q psy9169 258 VETLSDICWALSYISDGHNDKIQAVVD----T---GVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQT----- 321 (440)
Q Consensus 258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~----~---g~~~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~----- 321 (440)
.+....|+.+|+-++.-++-+.+..-. . .++..++..-. -.+++++.+|+.+|-|++.+.++..
T Consensus 623 ~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~ 702 (1516)
T KOG1832|consen 623 HDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIV 702 (1516)
T ss_pred hHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhh
Confidence 356777777777777666544322211 1 12222322211 1268999999999999987542211
Q ss_pred ------------------------------HHHHHcCCHHHHHHHhcCCCh-----hHHHHHHHHHHHHhcCC
Q psy9169 322 ------------------------------DCVIQAGGLQKMKKLLSSSRV-----NIVKEAAWTISNITAGN 359 (440)
Q Consensus 322 ------------------------------~~l~~~g~l~~L~~ll~~~~~-----~i~~~a~~~L~nl~~~~ 359 (440)
..+...++|..|+++|+...| .+|+.||.+|.-++.++
T Consensus 703 ~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 703 AVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred hccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence 122346789999999986543 69999999999998753
No 226
>KOG1020|consensus
Probab=93.56 E-value=2.1 Score=47.36 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=97.5
Q ss_pred CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280 (440)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~ 280 (440)
+.+..++..+..+. ..++..|+.||+.+...++ .......+-..+..-+.++...|+.+|+..++......++.+.
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp---~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADP---SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcCh---HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 35666777777555 8999999999999997762 1222234444555556677889999999999987766665544
Q ss_pred HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHh
Q psy9169 281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~---~~~~~i~~~a~~~L~nl~ 356 (440)
.. ...+..-..++...||..+++++..+|...+.... +.....+++. +.+..|++-++-++.++=
T Consensus 892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 43 45666667778889999999999999988776543 2233344443 333457777777776654
No 227
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.44 E-value=2.3 Score=36.39 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=81.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------------------cCChHHHHhhhCCCCcHHHHHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-------------------LGTMPQILALVQPNTPTTFLRN 221 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-------------------~g~i~~L~~ll~~~~~~~~~~~ 221 (440)
.+.+.-++.++++++|..|+.+|..+-.++..+-...-+ ......|+..|....+..+...
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 445556667888999999999999988654322111110 1234456666776766888999
Q ss_pred HHHHHHhhhhCCCC-CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 222 IVWAISNLCRNKNP-APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 222 a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
++.++..|....+- ..+......++..+..++.+.|..++..++.+++.+....+
T Consensus 122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 99999999987621 12344557777888888899999999999999988876543
No 228
>KOG3665|consensus
Probab=93.31 E-value=2.4 Score=44.49 Aligned_cols=195 Identities=20% Similarity=0.215 Sum_probs=118.9
Q ss_pred HHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHhhhCCCCcH
Q psy9169 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPT 216 (440)
Q Consensus 140 ~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~L~~ll~~~~~~ 216 (440)
+|++++..+++..+.+++.|++..+..+++. .+.++...++..++|++...+. +........+ ..+-.++...+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 7778888899999999999999999999986 4588999999999999955321 1222211112 2333344455544
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~ 296 (440)
+.-..++..|+.+..+.+..........+-..+.+. +....... +....+.-..+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~---------------i~~~~~~~---~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEA---------------ISRWLTSE---IRVINDRSFFPRILRILR 634 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHH---------------hhccCccc---eeehhhhhcchhHHHHhc
Confidence 667777777777776543322222122222222222 22221111 111111112221444443
Q ss_pred -CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy9169 297 -SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTIS 353 (440)
Q Consensus 297 -~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~ 353 (440)
+..+..+..|++++.+++..+++....+.+.|+++.+.++-.... ..++.++.-.+-
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 345578899999999999998888888999999998888765443 345555544443
No 229
>KOG1820|consensus
Probab=93.00 E-value=3.2 Score=44.06 Aligned_cols=188 Identities=11% Similarity=0.042 Sum_probs=126.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 240 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (440)
.+.|-.-+.+++..-+..|+..+.-+..... ........|.+-.++.....+.+..+...++.+|..++..-.. ....
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~-~~~~ 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP-LFRK 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch-hhHH
Confidence 3444555556677778788888877775533 1111123345556666666677788999999999999977522 2344
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-H
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-H 319 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~ 319 (440)
....++|.+.+.+......++..+..++-.++....- ....+.+...+.+.++.++..+...+.......+ .
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 5578889999988887777766666655544432211 1347788889999999999998888877766444 1
Q ss_pred HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
....-.-.++++.++....+.+..||+.|.-++.-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 11111123578888888888889999999888887764
No 230
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.84 E-value=6.7 Score=35.86 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=123.9
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG 199 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (440)
|-..|.++++.+|..|+.+|+.+...-+.. .....-+..|+.++.+ .+......++.++..+.......... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence 445677889999999999999887654421 1222334444444433 33344444466666666332211111 1
Q ss_pred cCChHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChh
Q psy9169 200 LGTMPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 200 ~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
..++..+.+-... ......+..+...+..+........ ...-..++..+++++.. .||.-..-++..+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 1123333322221 1124566677777777765531111 11224677777777765 588888888888877765433
Q ss_pred hHHHHHhcCChHHHHHhccC-------C---Ch-hHH-HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169 278 KIQAVVDTGVVPRLVELLDS-------E---ET-TIL-TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~-------~---~~-~v~-~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~ 345 (440)
+ ....+.+.+.+.. + ++ .|. ..--..|.+..++++.... -++|.|++-|.++.+.+|
T Consensus 157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence 1 2334444444422 1 21 222 2233445555555554443 467899999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy9169 346 KEAAWTISNITAG 358 (440)
Q Consensus 346 ~~a~~~L~nl~~~ 358 (440)
..+..+|..++..
T Consensus 226 ~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 226 LDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 231
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.78 E-value=2.6 Score=40.63 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=88.4
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------CCCHHHHHHHHHHHH
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------TTDVETLSDICWALS 269 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~d~~i~~~a~~~L~ 269 (440)
.+.+..-.+.+-+-+..++...-++.|+..+..|+.... . ....-+...+..++. ..+..-...|+..++
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-~---~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-K---QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 344555556666666554546678888999999996641 1 111112223333343 356677888888888
Q ss_pred HhccCChh------------hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh
Q psy9169 270 YISDGHND------------KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337 (440)
Q Consensus 270 ~l~~~~~~------------~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 337 (440)
.++..... .+..+....++|.|. --.+..+-++..|++.+...-..-+. +.+. ++++.++..|
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L 355 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHL 355 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHT
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHh
Confidence 88865421 234445556666665 11233466888899998887654332 2232 4799999999
Q ss_pred cCCChhHHHHHHHHH
Q psy9169 338 SSSRVNIVKEAAWTI 352 (440)
Q Consensus 338 ~~~~~~i~~~a~~~L 352 (440)
.+++..+...|+.++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 999999999999875
No 232
>KOG2999|consensus
Probab=92.73 E-value=5 Score=39.85 Aligned_cols=164 Identities=11% Similarity=0.123 Sum_probs=110.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARAR 194 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r 194 (440)
...+.+.+.++++.-+..++..|..++.+ ......++...++..|..++.+.. .++...++.++..+-..+-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 55677888888888888899999999866 677788899999999999999865 4677777777777665432111
Q ss_pred HHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 195 DLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
+. +...++.....+.. ...+..+...|+..|-++..+.+.....+...--+..|+..+...+..+...|...+-.+..
T Consensus 164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 11 11223333333332 12235677778888888887764344444445667888899999998888888777766654
Q ss_pred C-ChhhHHHHHh
Q psy9169 274 G-HNDKIQAVVD 284 (440)
Q Consensus 274 ~-~~~~~~~l~~ 284 (440)
. +++....+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 3 3334444443
No 233
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.68 E-value=12 Score=37.49 Aligned_cols=244 Identities=14% Similarity=0.187 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 166 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~ 166 (440)
...+..|+..++..+..-+-.++.. +...--.++ ....++.|..+...|..++.+...... ... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence 4567777888877765443222222 222223444 344567899898899888866433111 111 11222
Q ss_pred hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--------------------------cHHHH
Q psy9169 167 LLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--------------------------PTTFL 219 (440)
Q Consensus 167 lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--------------------------~~~~~ 219 (440)
.+.. ..++-...-+.+|..|..++... + .++.++.+.|..-+...- +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 2232 33444455666777777666554 2 246667777766553110 12334
Q ss_pred HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhc
Q psy9169 220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
......+.|+........+.....+++..+..+.. ..++.....++..+-.+.. -+++. ++.++..|
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vL 222 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVL 222 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHH
Confidence 44555555665554444455555666666655543 2334444455444443332 12222 33333333
Q ss_pred c--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC------ChhHHHHHHHHHHHHhcCC
Q psy9169 296 D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS------RVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 296 ~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~------~~~i~~~a~~~L~nl~~~~ 359 (440)
- +...+....+-.++.||+...-.+ -.+..|..+|.++ +..+.+.|...+..+..+.
T Consensus 223 Csi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 223 CSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred hhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 2 122367778888999998654322 1345677777322 3456678888888887665
No 234
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.39 E-value=2.5 Score=42.23 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345 (440)
Q Consensus 266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~ 345 (440)
..+.|....+++....+ .|.+.+++.-+.+++..|+..++.+|+.++-.-.+ ++..+-.|++..|..-+-+..+.+|
T Consensus 73 ~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 73 RFFEYDMPDDPEGEELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred HHHHhcCCCChhhhHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33334444455442222 46678888888899999999999999988754332 3334555788888887777889999
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy9169 346 KEAAWTISNITAG--NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407 (440)
Q Consensus 346 ~~a~~~L~nl~~~--~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il 407 (440)
.+|..+|+.+-.. +++. ..+..+ +.-+|+.|+.+|+..|.--|
T Consensus 150 ~eAv~~L~~~Qe~~~neen-----------~~~n~l--------~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 150 REAVKVLCYYQEMELNEEN-----------RIVNLL--------KDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHhccCChHH-----------HHHHHH--------HHHHhcCcHHHHHHHHHHHe
Confidence 9999999998642 2221 111111 23357788888988886544
No 235
>KOG1566|consensus
Probab=92.23 E-value=9.5 Score=35.27 Aligned_cols=210 Identities=10% Similarity=0.081 Sum_probs=142.4
Q ss_pred HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHH---hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy9169 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKI---KICLPLLNQLIHTTDVETLSDICWALS 269 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~---~~~~~~L~~ll~~~d~~i~~~a~~~L~ 269 (440)
..+...|.+..|+..+.... -+.+..++....++-+....... ..+. .+++..++..-.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 34556788888888887666 67788888888888865422211 1111 3445555444111 3555555444444
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCC----HHHHHHHhcCCChhHH
Q psy9169 270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG----LQKMKKLLSSSRVNIV 345 (440)
Q Consensus 270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~----l~~L~~ll~~~~~~i~ 345 (440)
..... ......+....-+.....++..+.-++...|..+...+.+........++..+. .+.--.++.+++.-++
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 44443 334466777778888888888898899999999999999877766666666543 4446678889999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 417 (440)
Q Consensus 346 ~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 417 (440)
+.+...|+.+.-+.+.. ..+...+.+-.-+..+..|+..+...++-.|..+-..|-......
T Consensus 230 rqs~kllg~llldr~N~----------~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~ 291 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNS----------AVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP 291 (342)
T ss_pred HHHHHhHHHHHhCCCcH----------HHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence 99999999988764432 233455555556777788888888888888888777766554433
No 236
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.23 E-value=1 Score=38.96 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHHhCCCcHHHHHHH----------------hcCCHHHHHHhhCC------CCHHHHHHHHHHHHHh
Q psy9169 129 ENPNTQFEATWALTNIASGTSEQTMTVI----------------NANAIPKFLQLLSS------PHLNLAEQATWALGNI 186 (440)
Q Consensus 129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~----------------~~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl 186 (440)
+....-..++.+|.|++...... ..++ ....+..|+.++.. ....-....+.+|.|+
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34445566777788887653332 2222 22356677777755 2245567889999999
Q ss_pred hCCCchhHHHHHhc--CC--hHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 187 AGDGARARDLLLGL--GT--MPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 187 ~~~~~~~r~~i~~~--g~--i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
+.. +..|..++.. +. +..|+..+.+. +..-+.-++.+|.|+|-...
T Consensus 86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~ 135 (192)
T PF04063_consen 86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD 135 (192)
T ss_pred cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh
Confidence 988 8888988844 34 66777777766 46677789999999998763
No 237
>KOG1949|consensus
Probab=92.05 E-value=1.6 Score=44.39 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=115.4
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhCC-Cc----HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169 120 PICVELLDDENPNTQFEATWALTNIASG-TS----EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194 (440)
Q Consensus 120 ~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (440)
|.|..-|+..|..+|..|+..+.+..-- ++ +..+.+++ .-...|..+|.++-+.+|..|+..++.+... +-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence 3444555678999999999999998532 12 22233332 3466788999999999999988877776532 11
Q ss_pred HHHHhcC----ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169 195 DLLLGLG----TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 270 (440)
Q Consensus 195 ~~i~~~g----~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~ 270 (440)
.++-.. .+..+..-+..++..+++..+...|..+..++ ........++|.+-..+.+....++.++...|..
T Consensus 253 -e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 253 -EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred -HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 111112 23333333445555678888888888888765 3345567788888889999999999999888887
Q ss_pred hccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 271 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
+-...... +.+---.+.++.-|..++..+...-+..|-+.+
T Consensus 329 ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 329 IKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 76433211 111122344555555555555555555555544
No 238
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.86 E-value=2.2 Score=36.00 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
..+..+..+|.+.+++-+-.++..+.-++..++. +.+.. ...+..|+.+++..++..+.+.++.++..|...-...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788889998888888888888888866532 33333 2367888999998888899999999999988654333
Q ss_pred CCHHH------HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 237 PDFEK------IKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 237 ~~~~~------~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
+.... ...+++.++.+++. ......++.+|..+....
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 33321 23445555555554 455666666666665433
No 239
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.84 E-value=7.7 Score=33.42 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=88.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
-++.+++...+++..++..|+..+.-++...=-.|. ..+|.|+.+..++++.++..|...+..+....+.....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 367788888899999999999999877754321222 36999999999999999999999999998765554443
Q ss_pred HHhcCCHHHHHHh--hCCCC-HHH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-------cHHHHHH
Q psy9169 155 VINANAIPKFLQL--LSSPH-LNL---AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-------PTTFLRN 221 (440)
Q Consensus 155 i~~~g~i~~L~~l--L~~~~-~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-------~~~~~~~ 221 (440)
-...|+-..+--. +..+. ... ....+..+..+...+...|..+ +..|++.+.... ...-...
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 3333322221111 11111 111 3444555556665555555544 444555544321 2333445
Q ss_pred HHHHHHhhhhC
Q psy9169 222 IVWAISNLCRN 232 (440)
Q Consensus 222 a~~~L~~l~~~ 232 (440)
.+++..||+.-
T Consensus 158 ~~Fla~nLA~l 168 (187)
T PF12830_consen 158 LLFLAENLATL 168 (187)
T ss_pred HHHHHHHHhcC
Confidence 55555555543
No 240
>KOG2933|consensus
Probab=91.74 E-value=2.1 Score=39.36 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=79.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169 244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 323 (440)
Q Consensus 244 ~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (440)
..+...+..|.+.|.+...+.+..|..|+....+.....+ +.++..+++-+++....|...||-+++.|.+.-...+..
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888999999999999999987776554444 245777788888888899999999999998866555544
Q ss_pred HHHcCCHHHHH-HHhcCC---ChhHHHHHHHHHHHHhcC
Q psy9169 324 VIQAGGLQKMK-KLLSSS---RVNIVKEAAWTISNITAG 358 (440)
Q Consensus 324 l~~~g~l~~L~-~ll~~~---~~~i~~~a~~~L~nl~~~ 358 (440)
. ++.++ .++... +.-++..|-.+|..++..
T Consensus 167 ~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 167 E-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred H-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 3 23333 333332 345889999999999875
No 241
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.65 E-value=18 Score=37.32 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=83.9
Q ss_pred ChHHHHhhhCCC---CcHHHHHHHHHHHHhhhh----CCCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q psy9169 202 TMPQILALVQPN---TPTTFLRNIVWAISNLCR----NKNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSY 270 (440)
Q Consensus 202 ~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~ 270 (440)
.+..+..++.++ ....+...++-+++.+.. ..+.. .......+++.+...|. ..+.+.+...+.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 356666777643 234566666666666554 32111 12334566777666553 4566677888899988
Q ss_pred hccCChhhHHHHHhcCChHHHHHhcc-C--CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHH
Q psy9169 271 ISDGHNDKIQAVVDTGVVPRLVELLD-S--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIV 345 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g~~~~Lv~lL~-~--~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~ 345 (440)
+..... ++.+..++. . .+..++..|+++|..++...+...+ +.|+.++.+. ++++|
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHH
Confidence 875332 455555554 2 2457999999999998865554433 5567766654 46788
Q ss_pred HHHHHHHHHH
Q psy9169 346 KEAAWTISNI 355 (440)
Q Consensus 346 ~~a~~~L~nl 355 (440)
..|+.+|...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 8888777654
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.53 E-value=14 Score=38.49 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=91.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC---CcHHHHHHHHHHHHhhhh----C
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCR----N 232 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~----~ 232 (440)
++..+.+++.+....-. .|.+.|..+.......- ...+..+..++... .+..+...++.+++.+.. .
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 45666777766442211 23333433332211110 12345555565532 224555556656655543 3
Q ss_pred C-----CCCCCHHHHhhHHHHHHHhh----cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC---Ch
Q psy9169 233 K-----NPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ET 300 (440)
Q Consensus 233 ~-----~~~~~~~~~~~~~~~L~~ll----~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~---~~ 300 (440)
. ...........+++.+...+ ...|..-+..++.+|+|+... ..++.|..++... +.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccch
Confidence 1 00111223344555555544 456778889999999999642 2377888888665 56
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHH
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISN 354 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~n 354 (440)
.++..|+++|..++...+..+. +.|..++.+. ++++|-.|..+|..
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 8999999999998776664433 6677777654 45788888766665
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.36 E-value=1.2 Score=33.41 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=58.2
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
+...+..+.++.+.+|..++..|+.++.... ....--.+++..+...+.++++-|--.|..+|+.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4566777888999999999999999998766 11122246788899999999999999999999999976554
No 244
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.18 E-value=1.4 Score=37.97 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=59.8
Q ss_pred ChhhHHHHHhcCChHHHHHhccC---------CChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhH
Q psy9169 275 HNDKIQAVVDTGVVPRLVELLDS---------EETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNI 344 (440)
Q Consensus 275 ~~~~~~~l~~~g~~~~Lv~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i 344 (440)
+..-++.+++.|++..|+.+|.. .+......+++|+..|+.... ....+++ .+++..|...+.+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 33446777888889999988743 234678889999988876554 4444554 789999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9169 345 VKEAAWTISNIT 356 (440)
Q Consensus 345 ~~~a~~~L~nl~ 356 (440)
+..|+-.|+.+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 245
>KOG0891|consensus
Probab=91.14 E-value=3 Score=49.25 Aligned_cols=267 Identities=12% Similarity=0.112 Sum_probs=142.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCC----CcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERH----PPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN 157 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~----~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~ 157 (440)
+...+++.+..+...++.++..... .+...=....++..+..+- .+.++.++......+. ........+
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence 4467788888887666666543221 0000101223344444444 5666676655544443 222334555
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
.+.+..+...+.++.-.+++.+...+++++..+|.+.-..+....+..+-.+-.+.. . +...-+...........+..
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~-~-r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGM-A-RTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcch-H-HhHHHHHHHhhHHHHHHHHH
Confidence 667777777788888889999999999999877744222222222222222211111 1 11111111111110000000
Q ss_pred CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcC
Q psy9169 238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATG 316 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~ 316 (440)
-.......+..++..+...+..+...+..+++.||..........++ ..++.+.+.+.. .+..-+..++++++++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 11122334455666667777788889999999999766544334444 445555555543 3456778899999999875
Q ss_pred ChHHHHHHHHc-CCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169 317 NDHQTDCVIQA-GGLQKMKKLLSSS-RVNIVKEAAWTISNITAG 358 (440)
Q Consensus 317 ~~~~~~~l~~~-g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~ 358 (440)
.....+...+. -++..+...+... ...++.++...+.++.+.
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 54322222221 2445555555544 346778888888876654
No 246
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.09 E-value=14 Score=37.30 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc--C
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--G 316 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~--~ 316 (440)
...+.+++..++..+.+.|..++..+|..|..++..-.+. ...+-.|++..|.+-+.+..+.|+..|+.+|+.+-. +
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4556777888888888899999999999999998766543 455667888899988888889999999999998753 2
Q ss_pred ChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHH
Q psy9169 317 NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAW 350 (440)
Q Consensus 317 ~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~ 350 (440)
++++ .+...|..++++ ++..+|+.|..
T Consensus 165 neen-------~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 165 NEEN-------RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred ChHH-------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3322 123456666664 45577776543
No 247
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.09 E-value=8.8 Score=36.97 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=123.1
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC-CHHHHHHH-HHHHHHhhCCCchhHH
Q psy9169 119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQA-TWALGNIAGDGARARD 195 (440)
Q Consensus 119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a-~~~L~nl~~~~~~~r~ 195 (440)
+..+++=+ .+....+|..++--|+.-+. ++..+..+...|.+..+++.+... +..+...+ +.++.-++.+.... .
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~-~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM-H 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-h
Confidence 55555556 34556788888888888875 488999999999999999999553 33243333 44445555554332 3
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhc---------CCCHHHHHHHH
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIH---------TTDVETLSDIC 265 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~---------~~d~~i~~~a~ 265 (440)
.+...+....++.++.-........... .. ....... ....+..+.+.+. +....-+.-++
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-----~~----~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal 171 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-----SS----RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLAL 171 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh-----hh----hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHH
Confidence 3345555666666666110000000000 00 0000000 0111111111110 11112233333
Q ss_pred HHHHHhc--------------cCChhhHHHHHhcCChHHHHHhcc----CC-------C-----hhHHHHHHHHHHHhhc
Q psy9169 266 WALSYIS--------------DGHNDKIQAVVDTGVVPRLVELLD----SE-------E-----TTILTAALRTVGNIAT 315 (440)
Q Consensus 266 ~~L~~l~--------------~~~~~~~~~l~~~g~~~~Lv~lL~----~~-------~-----~~v~~~al~~L~nl~~ 315 (440)
.++-.++ ...+.....+...|++..++.++. .. . ......++++|-|.+.
T Consensus 172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~ 251 (361)
T PF07814_consen 172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF 251 (361)
T ss_pred HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 3333332 111223455667788999998875 11 0 1244567788888777
Q ss_pred CChHHHHHHHHc--CCHHHH-HHHhcCC---ChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 316 GNDHQTDCVIQA--GGLQKM-KKLLSSS---RVNIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 316 ~~~~~~~~l~~~--g~l~~L-~~ll~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
.+..+...++.. +.++.+ ..++... ...+...++..+.|++.+++..++.+-
T Consensus 252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~ 309 (361)
T PF07814_consen 252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA 309 (361)
T ss_pred cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence 666655555543 233333 2333322 234566789999999988876655443
No 248
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.99 E-value=4.2 Score=34.78 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhhCCCCCCCHHHHhhHH------------HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 218 FLRNIVWAISNLCRNKNPAPDFEKIKICL------------PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~------------~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
++..++.+|..+++..++..-+.....++ +.+.-++.++++.++..|+.++..|-++........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 45566666666666632332222222222 223344567889999999999999988765443322211
Q ss_pred -------------------CChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcC----CHHHHHHHhcCCC
Q psy9169 286 -------------------GVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAG----GLQKMKKLLSSSR 341 (440)
Q Consensus 286 -------------------g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g----~l~~L~~ll~~~~ 341 (440)
.+-..|+..|.++ +..+....+++++.++.+.+..+- ..| ++..+..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1223345555444 567888999999999998875432 124 4455566777888
Q ss_pred hhHHHHHHHHHHHHhcC
Q psy9169 342 VNIVKEAAWTISNITAG 358 (440)
Q Consensus 342 ~~i~~~a~~~L~nl~~~ 358 (440)
++++..+..+++-+.+.
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 89999998888888764
No 249
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=90.91 E-value=12 Score=34.06 Aligned_cols=178 Identities=18% Similarity=0.176 Sum_probs=106.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHhhhCCCC---cHHHHHHHHHHHHhhhh
Q psy9169 162 PKFLQLLSSPHLNLAEQATWALGNIAGD-------GARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCR 231 (440)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~ 231 (440)
+.+.+=+.++ ...+.++..|..+... ..+.|-.+.-.+.+|.++.-+.++. .......++..|+.+|.
T Consensus 67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 3333334443 3445566666666622 1222444444566788888877666 23566778888999996
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
.. ... ....++.....--..+..+-...++..|..-.. ++ .+..++..|+.+|.++.+.++..++.+|.
T Consensus 145 ~~-~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 145 AQ-GLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred hC-CCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 54 221 223333333322233344555666665543221 11 12234778999999988899999999999
Q ss_pred HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.+...-+.... ...+++.++.++++++ .-.+|..+|-++..
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 99875543322 4556899999999876 45577777776654
No 250
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.79 E-value=3.4 Score=43.11 Aligned_cols=148 Identities=12% Similarity=0.102 Sum_probs=80.5
Q ss_pred ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChh
Q psy9169 202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
.+..+.+++.+.. .. -..+.+.|..+.... ..+. ...+..+..++.. .++.+...|+.+++.+....-.
T Consensus 396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~-~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHV-RRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT--S--HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4556666666543 11 122334444444433 1222 3345555555543 4566777777777777631110
Q ss_pred h---------HHHHHhcCChHHHHHhcc----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC---C
Q psy9169 278 K---------IQAVVDTGVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS---R 341 (440)
Q Consensus 278 ~---------~~~l~~~g~~~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~---~ 341 (440)
. ....+...+++.+...|. ..+...+..++++|||+-. + ..++.|..++... .
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccc
Confidence 0 011122345666666654 3456778889999999843 2 3567777777665 4
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 342 VNIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 342 ~~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
..+|..|+|+|..++...++.+..++
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l 563 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREIL 563 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 67999999999999877776554443
No 251
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.52 E-value=8.3 Score=36.65 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=109.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHh-cCC-hHHHHhhhCCC---Cc---------HHHHHHHHHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAG-DGARARDLLLG-LGT-MPQILALVQPN---TP---------TTFLRNIVWA 225 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~-~g~-i~~L~~ll~~~---~~---------~~~~~~a~~~ 225 (440)
+..+-+.|.+....+...++..|..++. ++......+.. ... .+.+..++... .. ..++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888889998888888899999999998 66555555543 222 34455555311 11 1778888777
Q ss_pred HHhhhhCCCCCCCHH--HHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-hccCC---hhhHHHHHhcCChHHHHHhccCCC
Q psy9169 226 ISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSY-ISDGH---NDKIQAVVDTGVVPRLVELLDSEE 299 (440)
Q Consensus 226 L~~l~~~~~~~~~~~--~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~-l~~~~---~~~~~~l~~~g~~~~Lv~lL~~~~ 299 (440)
+..+....++..... ...+.+..+.+-+..++++++...+.++.. +.... ......+.+..++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777776653433222 235678888888989999999999999985 33322 233455667778999999887776
Q ss_pred h----hHHHHHHHHHHHhhcCC
Q psy9169 300 T----TILTAALRTVGNIATGN 317 (440)
Q Consensus 300 ~----~v~~~al~~L~nl~~~~ 317 (440)
+ .+...+-..|..+|+..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 6 88888999999988754
No 252
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.46 E-value=6.1 Score=40.81 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=82.1
Q ss_pred CCHHHHHHhhCCC----CHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHhhhCC---CCcHHHHHHHHHHHH
Q psy9169 159 NAIPKFLQLLSSP----HLNLAEQATWALGNIAG----DGARARDLLLGLGTMPQILALVQP---NTPTTFLRNIVWAIS 227 (440)
Q Consensus 159 g~i~~L~~lL~~~----~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~ 227 (440)
..+..+..++.++ +..++..|+-+++++.. +.+.+. ..+....++.+...|.. ..+..-+..++.+|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3566777777764 36788888888887762 222111 11223456666666642 122444566777777
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhH
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTI 302 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v 302 (440)
|+.... .++.+..++. ..+..++..|+|+|..++...+... -+.|+.++.+ .++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence 776443 3445555554 2356899999999999886555432 4556666654 35688
Q ss_pred HHHHHHHHHH
Q psy9169 303 LTAALRTVGN 312 (440)
Q Consensus 303 ~~~al~~L~n 312 (440)
|..|+.+|-.
T Consensus 533 RiaA~~~lm~ 542 (574)
T smart00638 533 RMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 253
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.47 E-value=21 Score=34.42 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH
Q psy9169 161 IPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239 (440)
Q Consensus 161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 239 (440)
+..++.=|.. ....+|..++--|+.-+.+ +.+|..+..+|.+..+.+.+....+..+...++.++..+...+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 3444444442 3367888888888888887 8889999999999999999965443435555555555555444344444
Q ss_pred HHHhhHHHHHHHhhc
Q psy9169 240 EKIKICLPLLNQLIH 254 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~ 254 (440)
.........+..++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 334556666666666
No 254
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.40 E-value=2 Score=35.28 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=63.9
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHH
Q psy9169 329 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKII 407 (440)
Q Consensus 329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~-~~~~v~~~a~~il 407 (440)
++..|..-+.++++.++..|.-.|-.++.++... +...+..-..++.|..+... .+++|++++..+|
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4566788888889999999988888888765432 33344455567777777776 7899999999999
Q ss_pred HhhCCCCccccc----------cCCCccccCCCCC
Q psy9169 408 SMAFNDSAENSI----------ENGDTIEFNPQPV 432 (440)
Q Consensus 408 ~~~~~~~~~~~~----------~~~~~~~~~~~~~ 432 (440)
..|...-..++. -...++.|..++.
T Consensus 106 ~~W~~~f~~~~~l~~i~~~y~~L~~~G~~f~~~~~ 140 (144)
T cd03568 106 KQWADEFKNDPSLSLMSDLYKKLKNEGPDLVTPDE 140 (144)
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence 999544433322 1234677765544
No 255
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.27 E-value=5.9 Score=36.35 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=93.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC--CHHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLSS----PHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
...+...+..-.++-++-++-.+.-++.+ +.....+...+ +...+..++.. ..+..+-.++.+++|+... +.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 34444444444445566777777666654 33333332222 24444444432 3477888899999999987 45
Q ss_pred hHHHHHhc-C-ChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCC-CHHHHhhHHHHHHHhh-cC-CCHHHHHHH
Q psy9169 193 ARDLLLGL-G-TMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLI-HT-TDVETLSDI 264 (440)
Q Consensus 193 ~r~~i~~~-g-~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll-~~-~d~~i~~~a 264 (440)
.+..+... + .+...+..+.... +..++..++..+.|++....... ......+++..+.+.+ .. .|+++...+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 55666643 2 3334444344332 57888888999999874321111 1222344566666633 33 689999999
Q ss_pred HHHHHHhccCChhhHH
Q psy9169 265 CWALSYISDGHNDKIQ 280 (440)
Q Consensus 265 ~~~L~~l~~~~~~~~~ 280 (440)
+-+++++...++....
T Consensus 223 LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhccChhHHH
Confidence 9999999976665433
No 256
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=89.23 E-value=16 Score=32.91 Aligned_cols=135 Identities=18% Similarity=0.242 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN--------LAEQATWALGNIAGDGARARDLLLGLGTM 203 (440)
Q Consensus 132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~r~~i~~~g~i 203 (440)
.....|+..|+.+- +..+++.++++++.++.- +.+....+|..+ ..|-+
T Consensus 57 ~~~~~a~~LLaq~r-----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~ 113 (249)
T PF06685_consen 57 NLHFYALYLLAQFR-----------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI 113 (249)
T ss_pred HHHHHHHHHHHHHh-----------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence 34455555555543 346899999999876531 222222233333 34567
Q ss_pred HHHHhhhCCCC-cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CChhhHHH
Q psy9169 204 PQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD-GHNDKIQA 281 (440)
Q Consensus 204 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~-~~~~~~~~ 281 (440)
+.|..++.++. +.-++..++.+|..+.... +...-..+.-+-..+-..+..++..+.......++.|.. ..-..+..
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~ 192 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRK 192 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHH
Confidence 88888888665 4567778888999999876 332222222222233333444444433333333333321 11233455
Q ss_pred HHhcCChHH
Q psy9169 282 VVDTGVVPR 290 (440)
Q Consensus 282 l~~~g~~~~ 290 (440)
+.+.|+++.
T Consensus 193 ~f~~~lVd~ 201 (249)
T PF06685_consen 193 AFEDGLVDP 201 (249)
T ss_pred HHHcCCCCc
Confidence 556666655
No 257
>KOG2999|consensus
Probab=88.88 E-value=27 Score=34.97 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc---HHHHHHHHHHHHhhhhCCCCCC
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
...+...+.+++..-+..++.-|..++.+ +.+...++...++..|..++.++.. ..++...+.+++.+-......-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 44566777777766666688889999888 5666778888889999999987653 4566666666666655431110
Q ss_pred CHHHHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 238 DFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll--~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.. ....++..+..+. +..+..+...|+..+-++..+++...+.+.+.--+..|+..+...+..++..|+..+..+..
T Consensus 164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00 0112233333333 33566788999999999999888777888888899999999999988888888877777665
Q ss_pred CCh
Q psy9169 316 GND 318 (440)
Q Consensus 316 ~~~ 318 (440)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 443
No 258
>KOG1949|consensus
Probab=88.88 E-value=22 Score=36.68 Aligned_cols=201 Identities=9% Similarity=0.065 Sum_probs=115.0
Q ss_pred HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC--cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169 110 IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186 (440)
Q Consensus 110 ~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl 186 (440)
...-++.|++..++..- ..+.+.+-...-.+|+..+... ....+.++--=.=|.|..-|+.+|..|+..|+..+.++
T Consensus 122 L~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~ 201 (1005)
T KOG1949|consen 122 LLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEA 201 (1005)
T ss_pred hHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHh
Confidence 45556778888777654 3333222222223333333210 11111222112335566677788999999999999998
Q ss_pred hC-CCc----hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHH
Q psy9169 187 AG-DGA----RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVET 260 (440)
Q Consensus 187 ~~-~~~----~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i 260 (440)
-- .+| +..+.+++. -...|..+|.++- +.++..++.-++.+...--.-....++..++..+..-+ ..+..++
T Consensus 202 fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~-p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~V 279 (1005)
T KOG1949|consen 202 FPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPY-PMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDV 279 (1005)
T ss_pred ccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchhe
Confidence 72 112 223444433 3567888888776 67777666655554432211122233444555554433 3455689
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
+.+....|-++..++... .+++. ++|++-..|.+.+..|+.++...|..|-.
T Consensus 280 R~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 280 RCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred ehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 999999999998766432 22222 25566666677788899988888877643
No 259
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.86 E-value=7.6 Score=30.76 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHhhcCcchHHHHHHHHc
Q psy9169 304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGELNQMALLVEES 382 (440)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~i~~~~~~~~~~~l~~~ 382 (440)
...+.-|.+++..+...... +.+.|.+-|++.++.|+..+..+|-+++.. ++.....+-.. ......+.+.
T Consensus 19 gy~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~---~~~Ik~~~~f 90 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN---SAQIRECANY 90 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh---HHHHHHHHHc
Confidence 34445566666665444443 456788888888899999999999999974 54443333220 0011112222
Q ss_pred Cc-HHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 383 GG-LEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 383 g~-l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
.| .+.+. -...+..|+..|.++++-.|+++
T Consensus 91 ~g~~Dp~~--Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 91 KGPPDPLK--GDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred CCCCCccc--CcchhHHHHHHHHHHHHHHhccC
Confidence 22 22222 12346689999999999999865
No 260
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=88.82 E-value=8.7 Score=36.65 Aligned_cols=213 Identities=15% Similarity=0.127 Sum_probs=109.6
Q ss_pred HHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169 114 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 114 i~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
+...++..|..++ +..++......+.+|..-...- ..-+...++..+.+=+++..+.+|...+..++.+......
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 3445677777777 6666666666666665543221 0112234566677777777777998888888888751111
Q ss_pred hHHHHHhcCChHHHHhhhC----CCCc----HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH--------HHHH---Hhh
Q psy9169 193 ARDLLLGLGTMPQILALVQ----PNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKICL--------PLLN---QLI 253 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~ll~----~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--------~~L~---~ll 253 (440)
....-....+++.|+..++ +... ..+...+ ++..+.....+.... ..... |.++ +++
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~--~~l~~~~~~~~~~~~--~~~~~~~l~~~~kps~ll~~kvy 170 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAY--VLLALSSWKLDKIDS--KNISFWSLALDPKPSFLLSEKVY 170 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHH--HHHHhccccchhhhh--hhhhhhhhccCCCcchhcCHHHH
Confidence 1112223456777777775 2221 1121111 111121111010000 00000 0000 112
Q ss_pred cC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCH
Q psy9169 254 HT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGL 330 (440)
Q Consensus 254 ~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l 330 (440)
.. .+++.....+.++..+..+.......-........++.++.++ ...+|..|+.++..+...++.. +...++
T Consensus 171 skl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li 246 (339)
T PF12074_consen 171 SKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLI 246 (339)
T ss_pred hccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHH
Confidence 22 3445555566666655544332211111233467788888887 7899999999999999888864 223344
Q ss_pred HHHHHHhc
Q psy9169 331 QKMKKLLS 338 (440)
Q Consensus 331 ~~L~~ll~ 338 (440)
..+-..+.
T Consensus 247 ~~l~~~l~ 254 (339)
T PF12074_consen 247 SGLWKWLS 254 (339)
T ss_pred HHHHHHHH
Confidence 55555554
No 261
>KOG2005|consensus
Probab=88.73 E-value=12 Score=38.22 Aligned_cols=145 Identities=10% Similarity=0.093 Sum_probs=79.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..++..+-+.+.++++.+..-|+-.+.-.-++-.+. + .-++..|...+.+++..++..++.-|+-.-+++. +
T Consensus 414 d~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq--~ 485 (878)
T KOG2005|consen 414 DKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ--R 485 (878)
T ss_pred hhhHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--h
Confidence 345666666666666666555544443221111110 0 0134456667788888899888888887766533 3
Q ss_pred HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+.+. ..|..++.+.+ .++..-|..+||.+...+... -+...+++.++.--.........+-....|.-+.
T Consensus 486 e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~---dvts~ilqtlmekse~El~d~~~RFL~LGL~llf 557 (878)
T KOG2005|consen 486 EEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNE---DVTSSILQTLMEKSETELEDQWFRFLALGLALLF 557 (878)
T ss_pred HHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCCh---HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHH
Confidence 3332 25666666655 567777888888887443221 1122234444443332223445555556666666
Q ss_pred hCC
Q psy9169 231 RNK 233 (440)
Q Consensus 231 ~~~ 233 (440)
.++
T Consensus 558 lgk 560 (878)
T KOG2005|consen 558 LGK 560 (878)
T ss_pred hcc
Confidence 555
No 262
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.56 E-value=11 Score=36.36 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh-----------
Q psy9169 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------SPHLNLAEQATWALGNIAGDGARA----------- 193 (440)
Q Consensus 131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~----------- 193 (440)
..-+..|+..|..++.........++ ...+-.+|. +.+..-++.|+..++.|+......
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 34567788888888854222222222 222333332 344788899999999999544221
Q ss_pred -HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy9169 194 -RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 268 (440)
Q Consensus 194 -r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L 268 (440)
-..++...++|.|. -..+..+-++..|++.+..+-..- ......+++|.++.+|.+++.-+...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l----~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL----PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 13344455566555 122334667888999888777553 3456788999999999999988888888765
No 263
>KOG2933|consensus
Probab=88.50 E-value=2.1 Score=39.35 Aligned_cols=141 Identities=12% Similarity=0.112 Sum_probs=91.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 240 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (440)
+...+..|.+.+.+....++..|..++...++.....+. ..|..+++-+++.. ..+-+.+|.++..++...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i--- 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSI--- 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH---
Confidence 334455566666666667777777777554443333322 24455556666655 7899999999999998763321
Q ss_pred HHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 241 KIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
....-..+..|+.. ++.-++.+|-.+|..++.+-... -+++.|+..+.+.++.++..++.+..+.+
T Consensus 165 -~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 165 -DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 12233333444433 34568999999999888665432 24788888899999999888887776654
No 264
>KOG4464|consensus
Probab=88.24 E-value=17 Score=35.00 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.2
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----------CCCHHHHHHHHHHHHHhcc
Q psy9169 204 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------TTDVETLSDICWALSYISD 273 (440)
Q Consensus 204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------~~d~~i~~~a~~~L~~l~~ 273 (440)
..+..+|.++.....+..++.++.-|++.+ .........+.+..|..+-. ..|..++..++.+|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk-~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDK-DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccc-cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 445555555554555666667777777776 33333333444444444331 2355899999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhccCC-----ChhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHHHHhcCC---C---
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSS---R--- 341 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~-----~~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~~ll~~~---~--- 341 (440)
++....+..+.......+.+.+... ...+...=++.|--+.. ..+...+.+.+.++++.+.+.+.+. +
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 9998878888887777777766321 11233333333333333 2244556777889999999998653 1
Q ss_pred ---------hhHHHHHHHHHHHHhcC
Q psy9169 342 ---------VNIVKEAAWTISNITAG 358 (440)
Q Consensus 342 ---------~~i~~~a~~~L~nl~~~ 358 (440)
.+...+|..++.|++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 13556788888898864
No 265
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=88.13 E-value=15 Score=38.64 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..|..|+.+|.|.+..+...+-..+...+.....+ -++..|+++. .+.+. .++.+|..+ ..|..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s~----~~~~il~~~--~~P~~- 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNSQ----RALEILVGV--QEPHD- 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCcH----HHHHHHHhc--CCccH-
Confidence 45889999999999999998888888887665422 1366677766 44332 344555544 22321
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
...+..|-.++..+ .-|-.++..|+.+....+..-..+.+...++.|+..|..+.+..++..|+.+|.-|.-.
T Consensus 69 -----K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 69 -----KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred -----HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 13455566666654 56778999999999887877788889999999999999888888888888888877754
Q ss_pred C
Q psy9169 233 K 233 (440)
Q Consensus 233 ~ 233 (440)
-
T Consensus 142 i 142 (668)
T PF04388_consen 142 I 142 (668)
T ss_pred c
Confidence 3
No 266
>KOG1848|consensus
Probab=87.61 E-value=10 Score=41.99 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
.+.+|+-|+.--+++...+..+. .+....++ .++.+..+..+.++++.-.|...+++..
T Consensus 1073 ~~ltisgIaklf~e~fk~llnln---~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLN---GFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcc---cHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 56666666654444433333321 11111111 2556667777888999888888877763
No 267
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.65 E-value=23 Score=31.71 Aligned_cols=201 Identities=14% Similarity=0.182 Sum_probs=113.8
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 77 PEMIE-GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 77 ~~lv~-~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
+.++. .-+..++..+...+..|-.+.+.+. ..... ++..+..+...+..+.+.-+...+..+...++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 33444 3446788999999999998876552 22222 34455555566666677778888888876544322
Q ss_pred HhcCCHHHHHHh--------hCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 156 INANAIPKFLQL--------LSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 156 ~~~g~i~~L~~l--------L~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
+.+..++.. ..+ ...+.......++..+|...|+. ....++.+..++....++.....++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 333433333 011 11344445567888888776662 223577888888433337889999999
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhccCCC
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEE 299 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~~~~ 299 (440)
+..||... ..........+..-+.. ..+.+....|..+..+..+.-+. ........++..+-++..+.+
T Consensus 146 l~~Lc~~~-----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 146 LAPLCEAE-----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHh-----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 99999553 22234444455554443 34566665555555444332211 112233445555555555544
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.40 E-value=26 Score=32.01 Aligned_cols=219 Identities=17% Similarity=0.172 Sum_probs=128.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCc-HHHHHH------h-CCHHHHHHhc--cCCChHHHHHHHHHHHHHh
Q psy9169 78 EMIEGMKSSNPKMRMIATRSARKMLSKER--HPP-IDELIE------A-GVVPICVELL--DDENPNTQFEATWALTNIA 145 (440)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~--~~~-~~~ii~------~-g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla 145 (440)
.-+..|.+..+..-..|+..+.+++..-+ ++. .+.+.+ . |..+.+..++ .--++.....++.+|..++
T Consensus 11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~ 90 (262)
T PF14225_consen 11 TAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLT 90 (262)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHh
Confidence 34667778778788888888887776432 111 122211 1 4445555544 1122344455666666665
Q ss_pred CC-------CcHHHHHHHhcCCHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--
Q psy9169 146 SG-------TSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-- 212 (440)
Q Consensus 146 ~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~-- 212 (440)
.. .++.+-.+.-.+.+|.++.-+.+++ ......++..|+.+|.... .+.+..++.....
T Consensus 91 ~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~ 162 (262)
T PF14225_consen 91 PLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGR 162 (262)
T ss_pred cCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcC
Confidence 43 2222333333456788888888777 1344567788888874311 1223333333332
Q ss_pred -CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHH
Q psy9169 213 -NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291 (440)
Q Consensus 213 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~L 291 (440)
.+..+..+.++..|..-+. | .....++..+..+|.+.-+.++..++.+|..+...-+-... ...+++.++
T Consensus 163 fr~~~dfl~~v~~~l~~~f~---P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 163 FRDKDDFLSQVVSYLREAFF---P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCHHHHHHHHHHHHHHHhC---c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 2234566666655554321 1 12355777788999888899999999999998866553322 556788999
Q ss_pred HHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 292 VELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 292 v~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
.++|..+ ....|+.+|-+++..
T Consensus 234 lrlL~t~---~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 234 LRLLQTD---LWMEALEVLDEIVTR 255 (262)
T ss_pred HHHhCCc---cHHHHHHHHHHHHhh
Confidence 9999765 466777777766543
No 269
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.36 E-value=16 Score=30.74 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc--CCHHHHHHhhCCCC-HHHHHHHHHHHHHhh---CCC
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA--NAIPKFLQLLSSPH-LNLAEQATWALGNIA---GDG 190 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~--g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~---~~~ 190 (440)
..+..+..+|.+.++.-+..++..+.-.+..++ .+.+.+. --+..++.+|+.++ ..+.+.++.+|..|. .+.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356677788888889999888888888775432 2333333 35778888888866 677888888888877 344
Q ss_pred chhHHHHHh---cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 191 ARARDLLLG---LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 191 ~~~r~~i~~---~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
++....+.. .++++.++.++.. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 553333332 2344555555543 34556666666666654
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.23 E-value=3.1 Score=34.06 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhC
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIAS 146 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~ 146 (440)
....+..|.+.|+++++.+|+.|+..+-.++.....+....+...+.+..|+.++ ...++.++..++..+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999998887654534456777889999999998 56777899888888877763
No 271
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.20 E-value=13 Score=32.71 Aligned_cols=98 Identities=8% Similarity=0.107 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-----ChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHH
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMK 334 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-----~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~ 334 (440)
...++..|..++.++. ....++++.+--.+..+|... -..++..++..||.++.+++ .....+....++|.+.
T Consensus 117 vcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3445555555665554 446677776555555555322 23578899999999998655 4566778889999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169 335 KLLSSSRVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 335 ~ll~~~~~~i~~~a~~~L~nl~~~~ 359 (440)
++++.+++--+.-|++++.-+..+.
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999998877888888888877543
No 272
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.86 E-value=7.8 Score=32.45 Aligned_cols=145 Identities=10% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 159 NAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 159 g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
..++.|+.+|+.+. ..+|..++.+||.|..-+|...+.+.... + ..-............. +..+..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l-----~~~~~~~~~ 79 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISL-----PMMGISPSS 79 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHH-----hhccCCCch
Confidence 45678888888764 89999999999999877676544222111 1 0000000011111111 111111222
Q ss_pred CHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 238 DFEKIKICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll~~~d-~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
+......++..|...|++.. ..-...++.++.++........-..+ ..++|.++..+...+...++..+.-|+.|+
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33334556677777776543 22233455555555422211111111 346888888888776677777777777665
No 273
>KOG0413|consensus
Probab=85.77 E-value=3.6 Score=43.61 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh
Q psy9169 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252 (440)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 252 (440)
+.++.+++-+|+++|-..... ....+|.|++-|..++...++.+..-++..+|... .......+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence 457889999999999442222 23468999999998887888888888888888653 12346689999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC
Q psy9169 253 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 317 (440)
Q Consensus 253 l~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 317 (440)
|.++++-++..++-.|.+|....--.. +..++-+++-.|-+.+++++..|=.+++.+....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999986543221 1123334444455567789999999999887643
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.71 E-value=3.4 Score=33.89 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CChHHHHHHHHHHHHHhC
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIAS 146 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~~~i~~~a~~~L~nla~ 146 (440)
....+..|.+.|.+.++.+++.|+..+-.+....+.....++.....+..|+.++.. .++.++..++..+...+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999988766554445678888999999999944 788999998888888764
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.21 E-value=13 Score=29.97 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHH
Q psy9169 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKM 333 (440)
Q Consensus 255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L 333 (440)
.+|..+....|..+..-..+.. .++..|.+-|.++++.++..|+..|--++.+... ....+.+...+..|
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k---------~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPK---------EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 3555666666666643321111 2367788889999999999999999999876654 55556665778889
Q ss_pred HHHhcCC---ChhHHHHHHHHHHHHhc
Q psy9169 334 KKLLSSS---RVNIVKEAAWTISNITA 357 (440)
Q Consensus 334 ~~ll~~~---~~~i~~~a~~~L~nl~~ 357 (440)
..++... ++.++..+.-.+.+.+.
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9998753 56899998888888774
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.15 E-value=4.9 Score=35.19 Aligned_cols=143 Identities=10% Similarity=0.087 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-----cCCChHHHHHHHHHHHHHhCCCc-HHHHHHHhcCCH
Q psy9169 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-----DDENPNTQFEATWALTNIASGTS-EQTMTVINANAI 161 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-----~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~~~g~i 161 (440)
..-...|+..+.-++|... ....++++.+--.+..+| .+....+|..++.+++.+...++ .....+....++
T Consensus 114 snRvcnaL~lLQclaShPe--tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 114 SNRVCNALNLLQCLASHPE--TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred hhHHHHHHHHHHHHhcCcc--hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 3445566666665655432 344555665444444555 23345688899999999976544 455567788999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 162 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-------~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
|..++.+..+++--+..|+.+++.+.+++....-.... ...+..++..+-+..+..+.++++.+...||..
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999999998888888999999998775433221111 112233333332333356677777776666654
No 277
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.90 E-value=7.3 Score=31.88 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=60.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.++..|.+-|.+.++.++-.|+..|-.+..+ +..+...+...+++..|..++....+..++..++..+..-+..-
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4566777788888899999999988888876 35577888888999999999987666888888888888776543
No 278
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.36 E-value=3.9 Score=37.53 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHHHhhhhCCCCCCCHHHH-h--hHHHHHHHhhcCC---CHHHHHHHHHHHHHhccCChhhH-HHHHhcC
Q psy9169 214 TPTTFLRNIVWAISNLCRNKNPAPDFEKI-K--ICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKI-QAVVDTG 286 (440)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~--~~~~~L~~ll~~~---d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g 286 (440)
.+...+--++.+++|+..+. ........ . .++..+..+.... +..++..++..+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 45677778999999999876 32222211 1 2333333333332 67899999999999873211100 0001112
Q ss_pred ChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHH
Q psy9169 287 VVPRLVELLDS--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVK 346 (440)
Q Consensus 287 ~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~ 346 (440)
++..+++.+.. .+++....++-++|+++..++...+.....|+-..+...... .++.++.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 35666664432 578999999999999998776655544444555555544432 3444444
No 279
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.35 E-value=18 Score=33.49 Aligned_cols=138 Identities=15% Similarity=0.225 Sum_probs=75.9
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH-HHHHhcCCHHHH----HHhhC--------CCCHHHHHHHHHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKF----LQLLS--------SPHLNLAEQATWAL 183 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~-~~i~~~g~i~~L----~~lL~--------~~~~~v~~~a~~~L 183 (440)
=++|.++.++.+.++.++..++.+|..+....+... ..+...|..+.+ ..+|. .+...+...+.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999988899999999999999987644433 235566655544 33333 23366777778888
Q ss_pred HHhhC----CCchhHH----HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC
Q psy9169 184 GNIAG----DGARARD----LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255 (440)
Q Consensus 184 ~nl~~----~~~~~r~----~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 255 (440)
..++. +....|. .++..|++..+..... .....+....+..+..+...- ........+.+++.+.+.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~l-Gi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDEL-GISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcC
Confidence 77742 1111122 2222223222222211 112455555555555555432 111222345666666665554
Q ss_pred C
Q psy9169 256 T 256 (440)
Q Consensus 256 ~ 256 (440)
.
T Consensus 277 p 277 (282)
T PF10521_consen 277 P 277 (282)
T ss_pred C
Confidence 3
No 280
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=84.17 E-value=0.67 Score=28.41 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy9169 9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRR 48 (440)
Q Consensus 9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR 48 (440)
.|...||+++...++-+ |.+...++-|.+|-+.++.-|
T Consensus 2 PR~sqYK~~~~~~~Q~e--RR~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEE--RRREFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHH--HHHHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHH--HHHHHHHHHHHHhHHHHHhcc
Confidence 47788999865444433 334567777888876665433
No 281
>KOG3132|consensus
Probab=84.07 E-value=0.56 Score=40.98 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.4
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccc
Q psy9169 9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEI 56 (440)
Q Consensus 9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~ 56 (440)
.|...||+.-.++++..|||++ .++|.|++|.+...+-|++..++-+
T Consensus 25 pR~sQykn~~s~aeQ~arrr~~-llelQks~r~D~~~~~r~lA~dd~t 71 (325)
T KOG3132|consen 25 PRQSQYKNLTSDAEQRARRRAS-LLELQKSSRPDVDPEIRSLAVDDLT 71 (325)
T ss_pred chhhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCccHHHHhhcccccc
Confidence 6999999987666555555544 9999999999998888888765443
No 282
>KOG1788|consensus
Probab=83.98 E-value=49 Score=36.11 Aligned_cols=256 Identities=14% Similarity=0.143 Sum_probs=143.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--
Q psy9169 95 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 172 (440)
Q Consensus 95 ~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-- 172 (440)
..++..++.... .+...+.+..++..++.++ -+.+-|...+.++..+....+.+.. ..-+-.++..|++.-
T Consensus 663 wDcLisllKnnt-eNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 663 WDCLISLLKNNT-ENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHHhccc-hhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence 345555554433 5567777888888888888 2334455555555555544443211 122344566665521
Q ss_pred ----------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC---------CCcHHHHHHHHHHH---Hh--
Q psy9169 173 ----------LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP---------NTPTTFLRNIVWAI---SN-- 228 (440)
Q Consensus 173 ----------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~---------~~~~~~~~~a~~~L---~~-- 228 (440)
..+....+.+++.+.+.+-..+..+.+.+++..|+..|.. ..+..+-......| ..
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 2455567788888887777777778888888888777641 11111111111111 11
Q ss_pred hhhCCCCCCCH--HHHh----------h---------HHHHHH----HhhcCCCHHHHHHHHHHHHHhccC---------
Q psy9169 229 LCRNKNPAPDF--EKIK----------I---------CLPLLN----QLIHTTDVETLSDICWALSYISDG--------- 274 (440)
Q Consensus 229 l~~~~~~~~~~--~~~~----------~---------~~~~L~----~ll~~~d~~i~~~a~~~L~~l~~~--------- 274 (440)
+|.+......+ .+.. + ++..+. +.+-+++-.--..||..+..+-++
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 22222111100 0000 1 111111 111222222234455554443321
Q ss_pred -ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC---CChhHHHHHHH
Q psy9169 275 -HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAW 350 (440)
Q Consensus 275 -~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~---~~~~i~~~a~~ 350 (440)
.....+.+..+|++..|+..+-...+.++..-++.+..++..++.....+-..|.++.|+.++.. +....-..+..
T Consensus 896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalk 975 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK 975 (2799)
T ss_pred CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence 11234678899999999999888888999999999999999998888888888998888887642 23334444445
Q ss_pred HHHHHhc
Q psy9169 351 TISNITA 357 (440)
Q Consensus 351 ~L~nl~~ 357 (440)
++..+++
T Consensus 976 IvemLga 982 (2799)
T KOG1788|consen 976 IVEMLGA 982 (2799)
T ss_pred HHHHHhh
Confidence 5555543
No 283
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=83.70 E-value=25 Score=30.24 Aligned_cols=123 Identities=14% Similarity=0.084 Sum_probs=78.6
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 320 (440)
.....++.+.++..+.+..++..|+..+..+....=.. . ..++|.|+.+..++++.++..|...+..+....+..
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn--P---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN--P---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC--h---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 34667888888888999999999999998777432110 0 135899999999999999999999999998777655
Q ss_pred HHHHHHcCCHHHHHHHh---cCCChhH---HHHHHHHHHHHhcCChHHHHHHhh
Q psy9169 321 TDCVIQAGGLQKMKKLL---SSSRVNI---VKEAAWTISNITAGNSRQIDHVIQ 368 (440)
Q Consensus 321 ~~~l~~~g~l~~L~~ll---~~~~~~i---~~~a~~~L~nl~~~~~~~~~~~i~ 368 (440)
...=...|+-....-.. .+..... .......+..+..++..+...++.
T Consensus 80 v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~ 133 (187)
T PF12830_consen 80 VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK 133 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence 44333334322222111 1111111 334445555666666665555543
No 284
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=83.03 E-value=42 Score=31.58 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHHHHHhCCCcHHHHHHHhcC-----------CHHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCch
Q psy9169 130 NPNTQFEATWALTNIASGTSEQTMTVINAN-----------AIPKFLQLLS------SPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 130 ~~~i~~~a~~~L~nla~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
.-.+|..|+.|+..+..++++.+..+++.- ....|+..|- +.++.-.--|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 557899999999999999888887775321 1112333333 22232334456666666666666
Q ss_pred hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----c-CCCHHHHHHHHHH
Q psy9169 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----H-TTDVETLSDICWA 267 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~-~~d~~i~~~a~~~ 267 (440)
.|+....- + ...... +. + ....++.+..+| . ..++.+...-+..
T Consensus 131 ~Ke~al~V---~----~~~~~~-----------------ge-~------~vtliq~v~~lL~~~l~~~~d~ri~igyL~L 179 (312)
T PF04869_consen 131 AKEQALRV---T----EGDESS-----------------GE-E------PVTLIQTVSELLIASLRRNSDPRIQIGYLML 179 (312)
T ss_dssp HHHHHTT---------EE--ST-----------------TS---------EEHHHHHHHHTTT----T--HHHHHHHHHH
T ss_pred HHHHHHcc---c----CCCCCC-----------------CC-C------cccHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 55544321 0 000000 00 0 111333333333 2 4567777777777
Q ss_pred HHHhccCChhhHHHHHhc-CChHHHHHhccCC---ChhHHHHHHHHHHHhh
Q psy9169 268 LSYISDGHNDKIQAVVDT-GVVPRLVELLDSE---ETTILTAALRTVGNIA 314 (440)
Q Consensus 268 L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~---~~~v~~~al~~L~nl~ 314 (440)
|+....+++..+..+++. +.++.|+...... +.-|+--++..||-..
T Consensus 180 L~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 180 LIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 777777777777777766 5888888875332 3456656666666543
No 285
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.86 E-value=18 Score=27.36 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=56.9
Q ss_pred HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy9169 326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 405 (440)
Q Consensus 326 ~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~ 405 (440)
..+++..|+.....+....+.++.-.|..++..... ...+.+.|+.+.+..+...-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 345667777777777777888899999998876644 578889999999999999899999998888
Q ss_pred HHHh
Q psy9169 406 IISM 409 (440)
Q Consensus 406 il~~ 409 (440)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8865
No 286
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.83 E-value=45 Score=31.78 Aligned_cols=217 Identities=14% Similarity=0.076 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 212 (440)
Q Consensus 134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~ 212 (440)
|...+.+|..+... + +...++..|..++.. .++......+.+|+.-+... ..-+...++..+..-+.+
T Consensus 4 r~~~~~~L~~l~~~-~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 4 RVLHASMLSSLPSS-S------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHhCCCc-c------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcC
Confidence 33444555555441 1 233455666666654 55666666666665544211 000112234455555555
Q ss_pred CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----CCCHHHH---HHHHHHHHHhccCChhhHHH--H-
Q psy9169 213 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----TTDVETL---SDICWALSYISDGHNDKIQA--V- 282 (440)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~---~~a~~~L~~l~~~~~~~~~~--l- 282 (440)
.. ..+++..+.++...+..............++|.|.+.++ ++-+... ..++.++..++....+.+.. .
T Consensus 73 kk-~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 73 KK-PPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS 151 (339)
T ss_pred CC-CcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence 44 458888888888777622122233445678888887773 2211111 11222221122111111111 0
Q ss_pred ---HhcCChHHHH---HhccC-CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHH
Q psy9169 283 ---VDTGVVPRLV---ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTIS 353 (440)
Q Consensus 283 ---~~~g~~~~Lv---~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~ 353 (440)
+-.+-=|.++ +++.. .+.+.....++++..+..+.+.....-.....-..++.++.++ .+.+|+.|.-++.
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALK 231 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 0000000000 11111 2334455566666666654433221111223566788888887 7899999999999
Q ss_pred HHhcCChHH
Q psy9169 354 NITAGNSRQ 362 (440)
Q Consensus 354 nl~~~~~~~ 362 (440)
.+....+..
T Consensus 232 ~l~~~~~~~ 240 (339)
T PF12074_consen 232 KLYASNPEL 240 (339)
T ss_pred HHHHhChHH
Confidence 999877763
No 287
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.77 E-value=3.8 Score=36.35 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHh-------CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH-HHHhcC
Q psy9169 89 KMRMIATRSARKMLSKERHPPIDELIEA-------GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM-TVINAN 159 (440)
Q Consensus 89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~-------g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~-~i~~~g 159 (440)
.-|..|+.++.|+.-.+.| .+.++.. .++..|+++| ...++-.|+-|+-.|.+++.+++.... ...+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4588899999998655543 3444433 3456677777 778899999999999999998777664 456778
Q ss_pred CHHHHHHhhCCCC
Q psy9169 160 AIPKFLQLLSSPH 172 (440)
Q Consensus 160 ~i~~L~~lL~~~~ 172 (440)
.|..|+.++.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997654
No 288
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.27 E-value=8.3 Score=31.12 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc---CCChHHHHHHHHHHHHHhC
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---DENPNTQFEATWALTNIAS 146 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~---~~~~~i~~~a~~~L~nla~ 146 (440)
....+..|.+.|+++++.+|+.|+..+-.++.....+....+.....+..|+.++. ..++.++..++..+...+.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34668888899999999999999999988876655334456666677888999984 4577899888888887764
No 289
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.68 E-value=6.5 Score=31.77 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=57.2
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CC-hHHHHHHHHHHHHHhC
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-EN-PNTQFEATWALTNIAS 146 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~-~~i~~~a~~~L~nla~ 146 (440)
....+..|.+.|+++++.+++.|+..+-.++.....+....+...+.+..|+.++.. .+ +.++..++..+...+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 346678888899999999999999999888766554445677778899999998833 33 3488888887777653
No 290
>KOG1822|consensus
Probab=81.47 E-value=1.2e+02 Score=35.60 Aligned_cols=231 Identities=15% Similarity=0.120 Sum_probs=124.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHH---HHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQF---EATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~---~a~~~L~nla~~~~ 149 (440)
..+..++..|...++..+..+..++..++..-+.++. -++....++.-| ...++-.|. .|+.+|.....+-.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f----~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPF----VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 3455566677788888888888888888754432221 122345555556 444554443 34444444433211
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHH
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAI 226 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L 226 (440)
... .-..++..+..+..+++ +.|+.-++.++.-+...+.... .+.....+..+..++.+.. ..++......++
T Consensus 952 s~q---hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 952 SGQ---HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred Cch---hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 111 11245677888888776 5999999999988885544333 2222233444444444221 233333333333
Q ss_pred H------hhhh--CC----CCC--CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169 227 S------NLCR--NK----NPA--PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292 (440)
Q Consensus 227 ~------~l~~--~~----~~~--~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv 292 (440)
. ++.. ++ +.. ........++-...-++.++|+.+...+..++-++--..+... --.-+++.|.
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLC 1104 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHH
Confidence 2 2222 11 111 1111223344445555677788899999999988875544221 1123467777
Q ss_pred HhccCCChhHHHHHHHHHHHhhc
Q psy9169 293 ELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 293 ~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.+|.++..-.+..++.++..++.
T Consensus 1105 ~~l~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1105 SLLSSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred HHhcchhhhhhhhHHhhhhHHhH
Confidence 77776655555656666666554
No 291
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.04 E-value=7.4 Score=31.69 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=58.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------CChHHHHHHHHHHHHHhC
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------ENPNTQFEATWALTNIAS 146 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------~~~~i~~~a~~~L~nla~ 146 (440)
...+..+.+.|++.++.+++.|+..+-.+...-.......+...+.+.-|+.++.. .++.++..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999888765554445677778889999998842 467888888887777663
No 292
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=80.88 E-value=62 Score=32.14 Aligned_cols=217 Identities=14% Similarity=0.239 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL 167 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l 167 (440)
...+..|+.+|..+++.-..+....+.+ +.|+.+|.+....-|..++-++...+.........-.-....+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 3567888999998877644333333322 268888888888888888889998886533221110012345667777
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC-----hHHHHhhhC---CC----CcHHHHHHHH-HHHHhhhhCCC
Q psy9169 168 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT-----MPQILALVQ---PN----TPTTFLRNIV-WAISNLCRNKN 234 (440)
Q Consensus 168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~-----i~~L~~ll~---~~----~~~~~~~~a~-~~L~~l~~~~~ 234 (440)
|.++....-......+..+-.+....-..+...|. +|.|-.... .. -..+....++ ..+..+...-.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 77443211111222222222221222222333343 233322222 00 0122222222 23333443332
Q ss_pred CCCCH---HHH---h-hHHH---HHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHH
Q psy9169 235 PAPDF---EKI---K-ICLP---LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTIL 303 (440)
Q Consensus 235 ~~~~~---~~~---~-~~~~---~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~ 303 (440)
+.... ... . .+.. .....-..-+..+...++.++..+-.-++. . .-+|..|++-++. .+..++
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-L-----nPiIrpLMdSIK~Een~~LQ 330 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-L-----NPIIRPLMDSIKREENELLQ 330 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-c-----cHHHHHHHHHhhccccHHHH
Confidence 22222 111 1 1111 111111234556777777777777654432 2 2346677777754 467888
Q ss_pred HHHHHHHHHhh
Q psy9169 304 TAALRTVGNIA 314 (440)
Q Consensus 304 ~~al~~L~nl~ 314 (440)
..+..+|+.|.
T Consensus 331 ~rsA~slA~Li 341 (441)
T PF12054_consen 331 QRSAESLARLI 341 (441)
T ss_pred HHHHHHHHHHH
Confidence 88888888775
No 293
>KOG2005|consensus
Probab=80.31 E-value=52 Score=33.89 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=47.9
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh-HHHHHH
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHV 366 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~ 366 (440)
+..+-.+|...++.+|...=.|+|-++.++|.. ++++.|.++.+..+.++...|.++++-+.+|+. ..+..+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~m 714 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQM 714 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHH
Confidence 344445556667777777777777777777643 345667777777777777777777777777633 334444
Q ss_pred hh
Q psy9169 367 IQ 368 (440)
Q Consensus 367 i~ 368 (440)
+.
T Consensus 715 Lr 716 (878)
T KOG2005|consen 715 LR 716 (878)
T ss_pred HH
Confidence 44
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=79.63 E-value=15 Score=29.71 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHH-HHHHHHHHHHhhhhC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTT-FLRNIVWAISNLCRN 232 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~-~~~~a~~~L~~l~~~ 232 (440)
.++..|.+-|.++++.++-.|+..|-.+..+ ++.++..+...+++..|..++....... ++..++..+..-...
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3566677788888899999999999988876 4567778888889999999988655434 888888777766654
No 295
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.56 E-value=58 Score=30.95 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhC-CCcHHHHHHHhc--CCHHHHHHhhCCCC-------------HHHHHHHHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINA--NAIPKFLQLLSSPH-------------LNLAEQATWA 182 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~-~~~~~~~~i~~~--g~i~~L~~lL~~~~-------------~~v~~~a~~~ 182 (440)
++.+...|.+..+.+...++..|..++. ......+.+... --.+.|.+++.... +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7777888877778899999999999998 555666666543 23456666664211 1788888876
Q ss_pred HHHhh-CCCchhHHHHH-hcCChHHHHhhhCCCCcHHHHHHHHHHHHh-hhhCCCCCCCHH---HHhhHHHHHHHhhcCC
Q psy9169 183 LGNIA-GDGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAISN-LCRNKNPAPDFE---KIKICLPLLNQLIHTT 256 (440)
Q Consensus 183 L~nl~-~~~~~~r~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~---~~~~~~~~L~~ll~~~ 256 (440)
+..+. ..++..+..++ ..+.+..+.+-|..+. .+++..++.+|.. +.....-..... ....++..|..+....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~-~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDP-PETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCC-HHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 66655 44455666665 5667888888888744 8888888888874 554432222111 1256778888877766
Q ss_pred CH----HHHHHHHHHHHHhccCCh
Q psy9169 257 DV----ETLSDICWALSYISDGHN 276 (440)
Q Consensus 257 d~----~i~~~a~~~L~~l~~~~~ 276 (440)
++ .+...+-..|..+|..+.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 777777778877775443
No 296
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.81 E-value=41 Score=28.78 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (440)
.....+|.+++-|...+..-.--|...+..|... ..+.+-.++ ..++.+|-..|.+.++++...++.+|..|+..++.
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3467889999888887777666677777776655 444433332 35677788888999999999999999999877664
Q ss_pred HHH
Q psy9169 320 QTD 322 (440)
Q Consensus 320 ~~~ 322 (440)
.-.
T Consensus 114 vG~ 116 (183)
T PF10274_consen 114 VGE 116 (183)
T ss_pred hhH
Confidence 333
No 297
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.60 E-value=28 Score=35.23 Aligned_cols=221 Identities=14% Similarity=0.072 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC--C--------CCcHHHHHHHHHHHHhhhhCCCCCCCH
Q psy9169 170 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--P--------NTPTTFLRNIVWAISNLCRNKNPAPDF 239 (440)
Q Consensus 170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 239 (440)
+++.+|...|-..|-.+..+-+ +..++..|..+.. . .-+..++..++. .||+.....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~---~L~kS~~Aa--- 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILS---LLSKSVIAA--- 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHH---HHHHhHHHH---
Confidence 4456777777778877774411 1223444554443 1 123455554444 344332000
Q ss_pred HHHhhHHHHHHHhhcCC--CHHHHHHHHHHH---HHhccCChhh----HHHHHhcCChHHHHH----hccCCChhHHHHH
Q psy9169 240 EKIKICLPLLNQLIHTT--DVETLSDICWAL---SYISDGHNDK----IQAVVDTGVVPRLVE----LLDSEETTILTAA 306 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~~~--d~~i~~~a~~~L---~~l~~~~~~~----~~~l~~~g~~~~Lv~----lL~~~~~~v~~~a 306 (440)
.....++..+...+.+. +..++..++..+ .....+.... ...++..++.|.+-. --.+.+...+..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01123455555566665 566766666666 4444333322 233333444444410 0112356789999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHH
Q psy9169 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLE 386 (440)
Q Consensus 307 l~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~ 386 (440)
..+||.|+...+... .-+.+++..|.+-|..+.++++-.+--||+.++..-...-. + ........+ ..
T Consensus 395 Ye~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~---~--~~~~~~~~~-----~~ 462 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD---D--EDEQKRLLL-----EL 462 (501)
T ss_pred HHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc---c--hhHHHHHHH-----HH
Confidence 999999999887542 12356789999988888889999988899888753111000 0 000000000 00
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 387 KLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 387 ~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
.+.....+....++-.|.+.....|+.++
T Consensus 463 l~~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhCCccc
Confidence 11222335567788899999999987654
No 298
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.53 E-value=33 Score=36.65 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
-..+...+.++++..-...+.++..+..-..-++.. ...-++.-..-....-..+......+|..++..+++....+
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 345556666777776666666666654433211111 11112222222222223566678889999998888777655
Q ss_pred H-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 156 I-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 156 ~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
. +.++...++.++-+++.++.+.|...|..+.+.. |-.+.+-.++.+.- ........|.|..+...+
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~----------~R~e~i~~ll~~~~-~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD----------GRLEAIQALLQSNF-SPTLSAINWSLRQLTKLK 587 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhhh
Confidence 4 5689999999999999999999999999988532 22344444444444 567777788888777665
No 299
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=77.28 E-value=20 Score=29.43 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
-...|+..||.+..|.. +..|+++|.+.++.+...|+-+|++..-
T Consensus 79 s~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGYN-----------VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTTS-SSTT-----------HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhhccCCCc-----------HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 35678888887766653 6789999988889999999999998764
No 300
>KOG0413|consensus
Probab=77.19 E-value=14 Score=39.41 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 294 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l 294 (440)
+.++..+.-+|.++|-..+ ......+|.+++-|.. ++..++.+..-+++.+|......+ ..-+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~-----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~-----d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD-----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT-----DRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH-----HHhhHHHHHH
Confidence 3455666778888886642 2446689999987754 566777778888888876543222 2348999999
Q ss_pred ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAG--GLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g--~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|.++++-|+..++..|++|....- +.=.| ++..+..++ +.+++|+..|-+.++.+...
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~-----vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGI-----VKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhh-----hhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999975331 11122 233334444 45788999999999988753
No 301
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=76.86 E-value=30 Score=32.06 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc----c--------CCChHHHHHHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL----D--------DENPNTQFEATWAL 141 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL----~--------~~~~~i~~~a~~~L 141 (440)
..+|.++.++.+.++..+..++.++..++..-.......+.+.|..+.+-+.| . .+...+...+.-+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 45788899999999999999999999998654321112366777766555444 2 23344556666666
Q ss_pred HHHh
Q psy9169 142 TNIA 145 (440)
Q Consensus 142 ~nla 145 (440)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 302
>KOG1525|consensus
Probab=76.53 E-value=1.4e+02 Score=33.83 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=83.5
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 364 (440)
.|++|.|-.-|.+.+..++..|+..+|.+......+.. =-.......++.-+.+.+..+|.++.....++....+....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 47899999999999999999999999999876543322 00122455566666677888999999999888876554333
Q ss_pred HHhh--------cC--------------cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 365 HVIQ--------EG--------------ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 365 ~~i~--------~~--------------~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
.... +. ....+...+..- .+..+-..+......|+..|+.=+..+|.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3222 00 011222222222 45555566778889999999888777776
No 303
>KOG4464|consensus
Probab=76.41 E-value=38 Score=32.68 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC----C-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcch
Q psy9169 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS----R-VNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~----~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~ 373 (440)
+..+...++.||.|++..+....+...+......+.+.+... . .+++..-...|--+++-..+..
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~R---------- 179 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHR---------- 179 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHH----------
Confidence 457899999999999999998888888887777777655432 1 1333333444444444333322
Q ss_pred HHHHHHHHcCcHHHHHHHhcCC------------cHHHHHHHHHHHHhhCCC
Q psy9169 374 QMALLVEESGGLEKLEALQHHE------------NETVYQKCYKIISMAFND 413 (440)
Q Consensus 374 ~~~~~l~~~g~l~~l~~L~~~~------------~~~v~~~a~~il~~~~~~ 413 (440)
..++.+.+|++.+.+++..+ +++-...|+.+|..||+.
T Consensus 180 --sql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNv 229 (532)
T KOG4464|consen 180 --SQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNV 229 (532)
T ss_pred --HHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhe
Confidence 34455666666666655422 337778999999999874
No 304
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=76.19 E-value=81 Score=31.98 Aligned_cols=149 Identities=15% Similarity=0.018 Sum_probs=86.7
Q ss_pred CCHHHHHHhcc-----------CCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC--CHHHHHHHHHHH
Q psy9169 117 GVVPICVELLD-----------DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWAL 183 (440)
Q Consensus 117 g~i~~Lv~lL~-----------~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L 183 (440)
.+|..|..+.. .-++.+|...+..|+.-..- .-.-..++..+..-|.+. +..++..++..+
T Consensus 272 ~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~ 345 (501)
T PF13001_consen 272 DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------ATSFPNILQIVFDGLYSDNTNSKLKSLALQFI 345 (501)
T ss_pred HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------HhCCccHHHHHhccccCCccccccchhcchhh
Confidence 35666666554 24566777666666653110 001123444445555555 567777777777
Q ss_pred ---HHhhCCCchhHH----HHHhcCChHHHHhhh----CCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh
Q psy9169 184 ---GNIAGDGARARD----LLLGLGTMPQILALV----QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252 (440)
Q Consensus 184 ---~nl~~~~~~~r~----~i~~~g~i~~L~~ll----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 252 (440)
.....+.+...- ..+..++.+.+ +.- ....+...+..+..+|+.|+...+.. +...-.++..|..-
T Consensus 346 ~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l--~~~d~~li~~LF~s 422 (501)
T PF13001_consen 346 RGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL--FSKDLSLIEFLFDS 422 (501)
T ss_pred hcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHccCccc--ccccHHHHHHHHHH
Confidence 555544332211 12233444433 100 12234788999999999999876221 22335677777777
Q ss_pred hcCCCHHHHHHHHHHHHHhccC
Q psy9169 253 IHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 253 l~~~d~~i~~~a~~~L~~l~~~ 274 (440)
|..++++++..+-.+|+.|+..
T Consensus 423 L~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 423 LEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred hhCcchHHHHHHHHHHHHHHHH
Confidence 7888899999999999888853
No 305
>KOG0392|consensus
Probab=76.09 E-value=35 Score=37.82 Aligned_cols=235 Identities=17% Similarity=0.148 Sum_probs=125.8
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc---------c-CCChHHHHHHHHHH
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL---------D-DENPNTQFEATWAL 141 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL---------~-~~~~~i~~~a~~~L 141 (440)
....++.|+..+-++.++.|.-++..++.++..+....-...++..+ -.++..+ . +--..++..++|+|
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~-~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLL-IRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHH-HHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 44557788888889999999999999999987654222122222222 2222211 1 11125889999999
Q ss_pred HHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHH
Q psy9169 142 TNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLL--GLGTMPQILALVQPNTPTTF 218 (440)
Q Consensus 142 ~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~ 218 (440)
..+..+..... -...+..+.+++..++.+++.-.+..+. +++ ..++.+. ...+++....-+.+++ ..+
T Consensus 154 ~~~l~~~~~s~----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L~ds~-ddv 224 (1549)
T KOG0392|consen 154 GAYLKHMDESL----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGLEDSD-DDV 224 (1549)
T ss_pred HHHHHhhhhHh----hHHHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhcc-hHH
Confidence 98875422211 1134667777777776555433332222 222 1112221 1123344445555555 677
Q ss_pred HHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH-H-HHHHHHHHHHHhccCCh--hh-HHHHHhcCChHHHHH
Q psy9169 219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV-E-TLSDICWALSYISDGHN--DK-IQAVVDTGVVPRLVE 293 (440)
Q Consensus 219 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~-~-i~~~a~~~L~~l~~~~~--~~-~~~l~~~g~~~~Lv~ 293 (440)
+..++..+.-..... +.........++..+...+..-|. . -.......+..++.... +. .+.-...|++|.+..
T Consensus 225 ~~~aa~~l~~~~s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p 303 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWP 303 (1549)
T ss_pred HHHHHHHhhhhhHHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHH
Confidence 777777776665544 223333344455555544432221 0 11111122223332221 00 011123589999999
Q ss_pred hccCCChhHHHHHHHHHHHhhcCC
Q psy9169 294 LLDSEETTILTAALRTVGNIATGN 317 (440)
Q Consensus 294 lL~~~~~~v~~~al~~L~nl~~~~ 317 (440)
++.|.=..++..++..+..+....
T Consensus 304 ~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 304 FLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999887788899999888887644
No 306
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.07 E-value=13 Score=30.09 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC---------hhhHHH----HH
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH---------NDKIQA----VV 283 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~---------~~~~~~----l~ 283 (440)
-++...+.+++.++...-|.. ...+++.++.++.. ++......+.+|..+...- ..+... +.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 466777778887776542211 23466777777766 3444445555554444211 111111 11
Q ss_pred h--cCChHHHHHhccCCC----hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169 284 D--TGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 352 (440)
Q Consensus 284 ~--~g~~~~Lv~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L 352 (440)
+ ..+++.+.+++.... ..+...++.+++..+..- ....+.+.++++.+.+++.++ ..+..|+-+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 1 134444555554332 678899999999988733 355677788999999999544 4577777654
No 307
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.28 E-value=21 Score=31.79 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhhCCCC------CCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhH-HHHHhcCC
Q psy9169 216 TTFLRNIVWAISNLCRNKNP------APDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKI-QAVVDTGV 287 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g~ 287 (440)
.+-++.++.+|..||-.+.. .+.+.....++..|+.++.. .++..++-|+-.|.+|+.++.... ....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 46689999999999966522 23455677888889988865 678889999999999998887665 34456789
Q ss_pred hHHHHHhccCCC
Q psy9169 288 VPRLVELLDSEE 299 (440)
Q Consensus 288 ~~~Lv~lL~~~~ 299 (440)
+..|+.++...+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 308
>KOG1988|consensus
Probab=75.26 E-value=1.2e+02 Score=32.37 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=148.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
.-.|=+.|+++....|.+++..+-++....+- ..++++ ..-.|.......+..+|...+++...--.+ ...+
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~Pf---pifiNs-~llrLaDaF~~Gn~llRf~V~rv~~q~g~h----ln~v 97 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKYPF---PIFINS-QLLRLADAFPVGNNLLRFAVLRVDQQSGKH----LNKV 97 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhCCc---hhhhhH-HHHHHHHHhccCcHHHHHHHHHHHhhcccc----chhh
Confidence 34455677777778888888888888754442 234433 344566666777888999888888853322 2222
Q ss_pred H-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 156 I-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 156 ~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
. ....+..+.....+.++.-+..++..++.++.--|+ ..-.+.++..-..+.+.--.+.++.+...++.-..
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 2 223444455555677788899999999888744333 24455665554433324446677777777775432
Q ss_pred CCCCHHHHhhHHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHH
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVG 311 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~--d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~ 311 (440)
. ....+.-.+..++... .+......+.+++.|....... ..+......++. .+..+-...-+.++.
T Consensus 171 ~-----FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 171 D-----FACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred h-----hHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1 1122333344444433 3456777888888887644321 223445555553 344455556677777
Q ss_pred HhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhc
Q psy9169 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 357 (440)
Q Consensus 312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~ 357 (440)
+++...-. .-.+-++.|.+.+..+ ..-++..+.|.+.+++.
T Consensus 240 ~Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 77753321 1124566777777744 34567778888888774
No 309
>KOG1993|consensus
Probab=74.42 E-value=1.2e+02 Score=32.08 Aligned_cols=234 Identities=16% Similarity=0.137 Sum_probs=129.4
Q ss_pred CCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARARDLLLGLGTM 203 (440)
Q Consensus 128 ~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i 203 (440)
.+.+-++...+.+|.|+...-......+ ...+-+++++--+++ ..+.+-++..-+..-.+.+..-..+. +.+
T Consensus 626 ~~e~lLr~alL~~L~~lV~alg~qS~~~--~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~ 701 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVNALGAQSFEF--YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLF 701 (978)
T ss_pred ccCcHHHHHHHHHHHHHHHHhccCCccc--hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHH
Confidence 4556778888888888754211100000 011222333333322 22333333332233333333333332 467
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q psy9169 204 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 283 (440)
Q Consensus 204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~ 283 (440)
|.|+..+..+. +....+...+..-.--+++.--.....+++..+..++..-..+-....+.++..+...++ ......
T Consensus 702 p~l~~~iE~st--e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~ 778 (978)
T KOG1993|consen 702 PHLLYIIEQST--ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLL 778 (978)
T ss_pred HHHHHHHHhhh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhh
Confidence 77877776544 344444444433221111111112336778888888887777778888888888876665 446667
Q ss_pred hcCChHHHHHhc--cCCChhHHHHHHHHHHHhhcCChHHHHHHHHc---------CCHHHHHHHhcC-CChhHHHHHHHH
Q psy9169 284 DTGVVPRLVELL--DSEETTILTAALRTVGNIATGNDHQTDCVIQA---------GGLQKMKKLLSS-SRVNIVKEAAWT 351 (440)
Q Consensus 284 ~~g~~~~Lv~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---------g~l~~L~~ll~~-~~~~i~~~a~~~ 351 (440)
..++++.+..-+ ..+.|-+...-+.+++.+...+++..-.++.. .++..-+.+..+ .+++-||--+-+
T Consensus 779 ~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~La 858 (978)
T KOG1993|consen 779 FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLA 858 (978)
T ss_pred cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHH
Confidence 788888887765 34456777888888888887776544333321 123333333443 367888889999
Q ss_pred HHHHhcCChHHHHHHhh
Q psy9169 352 ISNITAGNSRQIDHVIQ 368 (440)
Q Consensus 352 L~nl~~~~~~~~~~~i~ 368 (440)
++.+...+...+.+.++
T Consensus 859 lsSll~t~~~~ila~~~ 875 (978)
T KOG1993|consen 859 LSSLLRTNNPDILAVLD 875 (978)
T ss_pred HHHHhccCCcHHHHHHh
Confidence 99988764444444433
No 310
>KOG2199|consensus
Probab=74.40 E-value=41 Score=32.17 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQK 332 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~ 332 (440)
..++.+++.++|.-++.=..+..+ ++..|.+-|.+.++.|...|+..++.++.+... ....+-...+...
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~kd---------~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e 92 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGKD---------CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE 92 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccHH---------HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence 456677788887776555444333 377888889999999999999999998875443 5566777788899
Q ss_pred HHHHhc-CCChhHHHHHHHHHHHHhc
Q psy9169 333 MKKLLS-SSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 333 L~~ll~-~~~~~i~~~a~~~L~nl~~ 357 (440)
|..++. +.++.+++...-++-+++.
T Consensus 93 l~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 93 LRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 999998 5678888887777777775
No 311
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.46 E-value=40 Score=27.38 Aligned_cols=84 Identities=12% Similarity=0.138 Sum_probs=60.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHH---HHHHHHHHHHhhhhCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTT---FLRNIVWAISNLCRNKN 234 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~---~~~~a~~~L~~l~~~~~ 234 (440)
.++..|.+-|.++++.++..|+.+|--+..++ +.++..+....++..|..++....... ++..+...+......-.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 35667788888899999999999998888765 567777878888999999887554333 77787777766655443
Q ss_pred CCCCHHHH
Q psy9169 235 PAPDFEKI 242 (440)
Q Consensus 235 ~~~~~~~~ 242 (440)
..+.....
T Consensus 122 ~~~~~~~i 129 (140)
T PF00790_consen 122 SDPELSLI 129 (140)
T ss_dssp TSTTGHHH
T ss_pred CCCCchHH
Confidence 33444433
No 312
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=72.12 E-value=2.2e+02 Score=33.89 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=102.7
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHH---HHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQ---TMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGT 202 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~---~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~ 202 (440)
.+.+..+...|+..|..++..--+. ...-.+...+.+|..++.+ .+.++++..+.++.++..... . -+.. +
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~-nIkS-G 1221 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---N-NVKS-G 1221 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---h-hhhc-C
Confidence 3456778888888888887532221 1122334567788877764 458999999999998873311 1 1222 4
Q ss_pred hHHHHhhhC---CCCcHHHHHHHHHHHHhhhhCCCCCC---CHHHHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHhc---
Q psy9169 203 MPQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHTT-DVETLSDICWALSYIS--- 272 (440)
Q Consensus 203 i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~~L~~ll~~~-d~~i~~~a~~~L~~l~--- 272 (440)
-+.+..++. ......+.+.+..++..++...-+.. .......++..+..+.... +..+-..|+..|..++
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 455555554 23347788888888877775421111 1233345555555555433 3455555555555331
Q ss_pred -cCCh-----------------------hhH-----HHHHhcCChHHHHHh---ccCCChhHHHHHHHHHHHhhc
Q psy9169 273 -DGHN-----------------------DKI-----QAVVDTGVVPRLVEL---LDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 273 -~~~~-----------------------~~~-----~~l~~~g~~~~Lv~l---L~~~~~~v~~~al~~L~nl~~ 315 (440)
.+.. +.. .......++|.|..+ ..++.++||..|+..|-.+..
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 1100 000 000012344444444 566788999999998888764
No 313
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.78 E-value=53 Score=26.73 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=67.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQK 332 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~ 332 (440)
..+|.......|..+.. .. ... ..++..|.+-|.+.++.++..|+..|-.++.+. +.....+...+++.-
T Consensus 15 ~~~dw~~ileicD~In~-~~--~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~e 85 (139)
T cd03567 15 REEDWEAIQAFCEQINK-EP--EGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNE 85 (139)
T ss_pred CCCCHHHHHHHHHHHHc-CC--ccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHH
Confidence 45666777777777742 11 111 124677888889999999999999999888644 335566777788989
Q ss_pred HHHHhcC------CChhHHHHHHHHHHHHhc
Q psy9169 333 MKKLLSS------SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 333 L~~ll~~------~~~~i~~~a~~~L~nl~~ 357 (440)
|++++.. .++.|+..+.-.+...+.
T Consensus 86 l~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 86 LIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999963 356888888887777764
No 314
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=71.75 E-value=42 Score=28.68 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=56.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
--+|.+++.|...+...++.|...+..++.......+-.+ =..++.++-..|.+.++++...++.+|..+...++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4578889999988888889999999999876221212121 13567778888889999999999999999965433
No 315
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=71.27 E-value=84 Score=28.80 Aligned_cols=60 Identities=10% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~ 146 (440)
..+..|.+.|..+|+..+ .+..++.. ..+++..++|.|+.. ..++.+-..++..|.+++.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~----------~~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGE----------WNIVQKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHH----------hchhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 456778888887766654 33333321 234455666666554 3478999999999999985
No 316
>KOG0301|consensus
Probab=71.06 E-value=1.3e+02 Score=31.06 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHH
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWT 351 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~ 351 (440)
+.....+.+||+++..++...+...+. -+..+++-+.. ......+..+..
T Consensus 690 EA~yR~l~AlgtL~t~~~~~~~~A~~~-~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 690 EAIYRLLVALGTLMTVDASVIQLAKNR-SVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHhc-CHHHHHHHHHHhccCchhhHHHHH
Confidence 345567788999988887666544433 44555554443 233344444433
No 317
>KOG1788|consensus
Probab=70.55 E-value=1.1e+02 Score=33.63 Aligned_cols=241 Identities=14% Similarity=0.099 Sum_probs=125.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC---CCcHHHHHHHhcC
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS---GTSEQTMTVINAN 159 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~---~~~~~~~~i~~~g 159 (440)
|.+.+.++|...+..+.++.+.++ .+....-+.--+|.|+.-+......+|...+.+|---.. .-|+ ++
T Consensus 476 LkaenkdlqaeVlnrmfkIftshp-eNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe-qE------ 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHP-ENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE-QE------ 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccCh-HHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH-HH------
Confidence 357788888888888888876554 333333345667888877744444555544443322110 0011 11
Q ss_pred CHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169 160 AIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238 (440)
Q Consensus 160 ~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (440)
+-.|+-+|+.+- ..+....+.....+......+++.+.+-|.++.|...++... .-.-..-....+.........+.
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhk-ll~gpdqysgvsehydrnpss~s 625 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHK-LLRGPDQYSGVSEHYDRNPSSPS 625 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhh-hccCcchhhhHHHHhhcCCCCch
Confidence 224666777654 445555555666666666788888889999999988776421 00000000011111111101111
Q ss_pred HHHH---hhHHHHHHHhhcC---CCH--H---HHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 239 FEKI---KICLPLLNQLIHT---TDV--E---TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 239 ~~~~---~~~~~~L~~ll~~---~d~--~---i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
+... ...+-.--++..+ .++ + .......+|..+..++.+....+.++..+..++.++-+ .+.+...+
T Consensus 626 f~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflin--dehRSslL 703 (2799)
T KOG1788|consen 626 FKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLL 703 (2799)
T ss_pred hhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHH
Confidence 1000 0011000111112 111 0 01112345666666777776777778888888888843 46788888
Q ss_pred HHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC
Q psy9169 308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339 (440)
Q Consensus 308 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~ 339 (440)
+++..+...++.+.. +.-+..+++.|++
T Consensus 704 rivscLitvdpkqvh----hqelmalVdtLks 731 (2799)
T KOG1788|consen 704 RIVSCLITVDPKQVH----HQELMALVDTLKS 731 (2799)
T ss_pred HHHHHHhccCccccc----HHHHHHHHHHHHh
Confidence 999988887765332 1123345555554
No 318
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.26 E-value=30 Score=33.11 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------C-ChHHHHHHHHHHHHHhCCCc
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------E-NPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------~-~~~i~~~a~~~L~nla~~~~ 149 (440)
..+.+.+.+++...+..|+..|+. + +.+. -++|.|+.++.. . +-......+..+..|.....
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t----D--~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT----D--PGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc----C--CCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 344555555555555555555541 1 1122 358888888832 1 34455556666666665433
Q ss_pred HHHHHHHhcCCHHHHHHhhCC----------CCHHHHHHHHHHHHHhh
Q psy9169 150 EQTMTVINANAIPKFLQLLSS----------PHLNLAEQATWALGNIA 187 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~ 187 (440)
-..+..+. -++|.++.++-. .+..+|+.|+.+|+.+|
T Consensus 250 l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~ 296 (343)
T cd08050 250 LHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQIC 296 (343)
T ss_pred CchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 33333332 377887777632 23689999999999888
No 319
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.07 E-value=45 Score=27.97 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhcCCC-----C---CcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH-Hhc
Q psy9169 88 PKMRMIATRSARKMLSKER-----H---PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV-INA 158 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~-----~---~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i-~~~ 158 (440)
...+..++..+..++.... . +....+++..+.+.++..+.++++.+-..++.++..+... .+..+ .+.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~el 112 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3455556666655554332 1 1355667788899999998666688888999999999843 23322 122
Q ss_pred C-CHHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHH
Q psy9169 159 N-AIPKFLQ-LLSSPH--LNLAEQATWALGNIAGDGARARDLLL 198 (440)
Q Consensus 159 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~ 198 (440)
+ .++.++. ++.+++ ..-++.++.++..++.+.....+...
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~ 156 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFV 156 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 2 2344444 566544 46778899999999988554444444
No 320
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.89 E-value=1.2e+02 Score=29.47 Aligned_cols=224 Identities=15% Similarity=0.148 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhc---CChHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHH
Q psy9169 172 HLNLAEQATWALGNIAGDGARARDLLLGL---GTMPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 247 (440)
Q Consensus 172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~---g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 247 (440)
+.++..+|+.+|+.+..+ +..-..+-.. -++...+..+.+ ..+..+....+|+|+.=--.. ..........++.
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-KIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-cccchhhHHHHHH
Confidence 468889999999998866 3222222111 135555566643 345678888888887532222 1111222233344
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcC-ChHHHHHhccCCChhHHHHHHHHHHHhhc--CCh-HHHH
Q psy9169 248 LLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTG-VVPRLVELLDSEETTILTAALRTVGNIAT--GND-HQTD 322 (440)
Q Consensus 248 ~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g-~~~~Lv~lL~~~~~~v~~~al~~L~nl~~--~~~-~~~~ 322 (440)
.+..+-+ -....+....+.++..+....+.. .....+ .+|.++..+-+....++..|..++-.+.. +.. ....
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~ 214 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSK 214 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHH
Confidence 4433333 456788999999999999777643 222233 78888888888777788776655544432 221 1111
Q ss_pred H---HHHc----C-----CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 323 C---VIQA----G-----GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 323 ~---l~~~----g-----~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
. ..+. + +.+.|..++.+.+....---.|...-..-++.. ++ -...+. ..+...+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----~~------~w~~~n--~wL~v~e~ 281 (372)
T PF12231_consen 215 SVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----LD------SWEHLN--EWLKVPEK 281 (372)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----hh------ccHhHh--HHHHHHHH
Confidence 1 1111 1 223355555553322222233433332223221 00 011111 12455667
Q ss_pred HhcCCcHHHHHHHHHHHHhhCC
Q psy9169 391 LQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 391 L~~~~~~~v~~~a~~il~~~~~ 412 (440)
..+++++.++..|..+-+.+..
T Consensus 282 cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 282 CFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 7888899999988887766643
No 321
>KOG1832|consensus
Probab=68.74 E-value=36 Score=36.25 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=96.1
Q ss_pred cHHHHHHhCCHHHHHHhcc-CC-------ChHHHHHHHHHHHHHhCCCcHHHHHHHhc--------CCHHHHHHhhCC--
Q psy9169 109 PIDELIEAGVVPICVELLD-DE-------NPNTQFEATWALTNIASGTSEQTMTVINA--------NAIPKFLQLLSS-- 170 (440)
Q Consensus 109 ~~~~ii~~g~i~~Lv~lL~-~~-------~~~i~~~a~~~L~nla~~~~~~~~~i~~~--------g~i~~L~~lL~~-- 170 (440)
+.+.+.+.+++..++++.. .. -.++...|+.+|+.+.+- |..+..+... .++..++..-.-
T Consensus 593 ~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 593 AAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 4677778888888888872 22 235566778888777655 3333333211 134444333322
Q ss_pred --CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169 171 --PHLNLAEQATWALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246 (440)
Q Consensus 171 --~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 246 (440)
-+++++..|+.+|-|+....|.+|...+..-+- ..=-..+..+...+.+.+.+.-.++-.++. ..+
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n----------dGI 741 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN----------DGI 741 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC----------ccH
Confidence 248999999999999988777776544311000 000011122222344555555555555543 357
Q ss_pred HHHHHhhcCC-----CHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 247 PLLNQLIHTT-----DVETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 247 ~~L~~ll~~~-----d~~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
..|+.+|+.. -..++.-||.+|.-|+..+.-+ |.+-+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVr-QIltKL 784 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVR-QILTKL 784 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHH-HHHHhC
Confidence 7788888643 2468899999999999876643 555443
No 322
>KOG1822|consensus
Probab=68.55 E-value=2.5e+02 Score=33.15 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=116.0
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
+..++..|...+|..+..+..++..++..-+.. .+ -.+....+++-+.+.. +-.|.--.-++|.+-.+.-..-..-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 334444445566777777777777766432211 11 1233445555555433 3333333334444332211111111
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH---HHHHH-----------
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV---ETLSD----------- 263 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~---~i~~~----------- 263 (440)
.-...+..|..+..++.++.++..++.++..+.....+.. .......+..+..++-+..+ ++...
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 1123466777777777777899999998888876653332 44445555555565543221 11111
Q ss_pred --HHHHHHHhccCChh-hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC
Q psy9169 264 --ICWALSYISDGHND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 340 (440)
Q Consensus 264 --a~~~L~~l~~~~~~-~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~ 340 (440)
...+++.=...+.. ....-+..-.+-...-++.++++.++..|+.++-++-.-.+.+.. -.-++..|..++.+.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence 11111111111111 011112222333444455677888999999999988765443221 112466677777666
Q ss_pred ChhHHHHHHHHHHHHhcC
Q psy9169 341 RVNIVKEAAWTISNITAG 358 (440)
Q Consensus 341 ~~~i~~~a~~~L~nl~~~ 358 (440)
.--+++...-++..+..+
T Consensus 1111 ~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hhhhhhhHHhhhhHHhHH
Confidence 555555555556655543
No 323
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.47 E-value=57 Score=34.84 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 259 ETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 259 ~i~~~a~~~L~~l~~~~~~~~~~l~~-~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.+....+.+|..+++.+++....++. .++...++.++-+++.++..+|...|..+..
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 56677888999999888877777665 5899999999999999999999999998864
No 324
>KOG1993|consensus
Probab=68.23 E-value=1.7e+02 Score=31.12 Aligned_cols=325 Identities=14% Similarity=0.132 Sum_probs=170.7
Q ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELL-DDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
.....++++|+.. |.-+++.+++.++-++..- +-..+.+. -..+...+..++ .-+.-+.+...+..|+.+.....
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4567788888876 7788888999998665321 11112221 134444555555 33445667777778877765433
Q ss_pred HHHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhh----CCCchhHHHHHhcCChHHHHhhhCCCC---cHHHHH
Q psy9169 150 EQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIA----GDGARARDLLLGLGTMPQILALVQPNT---PTTFLR 220 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~----~~~~~~r~~i~~~g~i~~L~~ll~~~~---~~~~~~ 220 (440)
+...... ..++..|-.+=+ ..++-++...+.+|.|+. ..+..+. .++-+++.+-.+.. ..-+.+
T Consensus 605 e~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~E 677 (978)
T KOG1993|consen 605 EHIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLE 677 (978)
T ss_pred HhhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhh
Confidence 3322111 111121111111 234556777777888776 2222221 12223333332221 123333
Q ss_pred HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHH-HhccCChhhHHHHHhcCChHHHHHhccCCC
Q psy9169 221 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS-YISDGHNDKIQAVVDTGVVPRLVELLDSEE 299 (440)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~-~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~ 299 (440)
.+...-.....+. + .-....-+++|.+...+....+ ....++.++. |+.-.+... -.....|++..+..++.+-.
T Consensus 678 DgmeLW~~~L~n~-~-~l~p~ll~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr 753 (978)
T KOG1993|consen 678 DGMELWLTTLMNS-Q-KLTPELLLLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVR 753 (978)
T ss_pred hHHHHHHHHHhcc-c-ccCHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 3332222222222 1 1122345677888877765433 3333334333 333333322 22233588889999987665
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhcCChHHHHHHhhc-CcchHHH
Q psy9169 300 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GELNQMA 376 (440)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~-~~~~~~~ 376 (440)
.+-....+.++-.+...++ -.......++++.+..-+- .+.|.+-.+-..+++.+.-.+++....++.- .+.+...
T Consensus 754 ~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~ 832 (978)
T KOG1993|consen 754 NEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILI 832 (978)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHH
Confidence 5556667777777766665 4444566788888876553 3346677777777777776677666555540 0001111
Q ss_pred HHH----------------HHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 377 LLV----------------EESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 377 ~~l----------------~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
.++ ++.. .=.+..|+.+.|+.|...-..|+.-+++
T Consensus 833 ~~li~~WI~~~~~I~~~k~rKl~-~LalsSll~t~~~~ila~~~~I~nl~~e 883 (978)
T KOG1993|consen 833 AMLIGNWILLFDHINHPKDRKLN-TLALSSLLRTNNPDILAVLDSIMNLWFE 883 (978)
T ss_pred HHHHHHHHHHcccCCCHHHhhHH-HHHHHHHhccCCcHHHHHHhHHHHHHHH
Confidence 000 0111 1235678888888888877777776655
No 325
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=68.03 E-value=13 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q psy9169 376 ALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMA 410 (440)
Q Consensus 376 ~~~l~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~ 410 (440)
...|.+.|.-..+..|..| ++++|++.|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5677888888888899999 9999999999999886
No 326
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=67.89 E-value=1.6e+02 Score=31.06 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=99.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (440)
.-|.-|+.+|.+++..+.+.+-..+........ +.. .+..|++..-...+.. ++.+ |+.-..|.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~---~~~----l~~~l~~y~~~t~s~~----~~~i---l~~~~~P~-- 67 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDR---EPW----LVNGLVDYYLSTNSQR----ALEI---LVGVQEPH-- 67 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccc---hHH----HHHHHHHHHhhcCcHH----HHHH---HHhcCCcc--
Confidence 457788899999988777777776655553321 111 2445555433222222 2222 22222221
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHHHHhhcCC
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGN 317 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~ 317 (440)
...++..|-..+.. +..+..++..|+.+....+.....+.++.+++.|+++|..+ +..+...|+.+|..|.-.-
T Consensus 68 ---~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 68 ---DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred ---HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 24456666666654 46888999999999998888889999999999999999654 5677888888888887654
Q ss_pred hHHHHHHHHcCCHHHHHHHh
Q psy9169 318 DHQTDCVIQAGGLQKMKKLL 337 (440)
Q Consensus 318 ~~~~~~l~~~g~l~~L~~ll 337 (440)
+......+. .++..+..++
T Consensus 143 p~~l~~~L~-~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLP-DLFNIFGRLL 161 (668)
T ss_pred cchhhHHHH-HHHHHHHHHH
Confidence 433222222 3455555555
No 327
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=67.06 E-value=30 Score=24.69 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 373 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 373 ~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
..-...+.+...-..+..|..|++++|...|..++..|-
T Consensus 32 ~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 32 PITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred CCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 334677778887788899999999999999999998874
No 328
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.98 E-value=7.8 Score=29.79 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHH
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~ 305 (440)
....+..+..|+..+ +....+++.|+++.|+.+|.|.+.++...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 455677777788765 56788999999999999999998876544
No 329
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.11 E-value=56 Score=24.78 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169 89 KMRMIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL 167 (440)
Q Consensus 89 ~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l 167 (440)
+++..|+..+..-+...- .....+. ..+.+..|++.+..+.+..+..++..|..++.. +.....+.+.|++..|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~L-i~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGL-ISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhcc-ccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence 345555554443332221 1223333 456777788877666677888999999998865 6667788888999997777
Q ss_pred hCCCCHHHHHHHHHHH
Q psy9169 168 LSSPHLNLAEQATWAL 183 (440)
Q Consensus 168 L~~~~~~v~~~a~~~L 183 (440)
=..-++..+...-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 7666666655444433
No 330
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.66 E-value=11 Score=30.70 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChH---HHHHHHHHHHHHh
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPN---TQFEATWALTNIA 145 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~---i~~~a~~~L~nla 145 (440)
...+..|.+.|.++++.+|+.|+..+-.++.....+....+.....+..|..++ ...... ++..++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 355777888888999999999999888777654433345565667888888888 333333 7877777766655
No 331
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=64.10 E-value=9 Score=21.51 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC
Q psy9169 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170 (440)
Q Consensus 132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~ 170 (440)
.+|..|+++|+++.. + .+++.|+..|.+
T Consensus 2 ~vR~~aa~aLg~~~~--~---------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--E---------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--H---------hHHHHHHHHhcC
Confidence 578999999999843 2 345666666654
No 332
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=63.59 E-value=1.2e+02 Score=28.49 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhc------------CChHHHHHhccC-----CChhHHHHHHHHHHHhhcCC
Q psy9169 255 TTDVETLSDICWALSYISDGHNDKIQAVVDT------------GVVPRLVELLDS-----EETTILTAALRTVGNIATGN 317 (440)
Q Consensus 255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~------------g~~~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~ 317 (440)
..|+.-..-|+.++.++...+++....+..- ..+..+..+|.. .++.++..-+..|.--..++
T Consensus 108 ~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~ 187 (312)
T PF04869_consen 108 SLDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC 187 (312)
T ss_dssp SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC
Confidence 3466667778889999998888776555432 145556665533 34556666666666666788
Q ss_pred hHHHHHHHHcC-CHHHHHHHhcCC---ChhHHHHHHHHHHHHhc
Q psy9169 318 DHQTDCVIQAG-GLQKMKKLLSSS---RVNIVKEAAWTISNITA 357 (440)
Q Consensus 318 ~~~~~~l~~~g-~l~~L~~ll~~~---~~~i~~~a~~~L~nl~~ 357 (440)
+..+..+++.| .++.|+...... +.-++.-++..|+-+..
T Consensus 188 p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 188 PDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 88777788775 799999975432 45678888888877665
No 333
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.69 E-value=1.8e+02 Score=29.49 Aligned_cols=221 Identities=14% Similarity=0.159 Sum_probs=114.3
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
+..|...|.+++..++..|+.-|+...+++. ++. ++..|..++.+.+ .++...|..+|+.+.......
T Consensus 452 lalLs~yl~s~s~k~~~aaiLGlg~afsGt~--~ee-----vl~lL~Pi~~std~pie~~~~asltLg~vFvGtcng--- 521 (881)
T COG5110 452 LALLSNYLQSSSSKHVIAAILGLGAAFSGTQ--AEE-----VLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNG--- 521 (881)
T ss_pred HHHHHHhccCCchHHHHHHHhhhHHhhcCCc--HHH-----HHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCc---
Confidence 4445556667777777777777776655532 222 3444555555555 467777777888776332111
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH-----HHhh----------------------HHHHH
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE-----KIKI----------------------CLPLL 249 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~~----------------------~~~~L 249 (440)
-+..-+++.++.-=.........+-.+..|..|..+.....+-. .+.+ .++.|
T Consensus 522 D~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~l 601 (881)
T COG5110 522 DLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSL 601 (881)
T ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHHH
Confidence 01111223333222222224445555555555555542211110 0001 12222
Q ss_pred HHhhcC--CC----HHHHHHHHHH--HHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH
Q psy9169 250 NQLIHT--TD----VETLSDICWA--LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321 (440)
Q Consensus 250 ~~ll~~--~d----~~i~~~a~~~--L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 321 (440)
...-.. .| .+.....+.+ ..-++-+.+-..+.+ +..+-..+...++.++...-.|+|-+..++|..
T Consensus 602 Lhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm- 675 (881)
T COG5110 602 LHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM- 675 (881)
T ss_pred HhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch-
Confidence 221111 11 1222222222 233333333222221 333444455567788888778888887777742
Q ss_pred HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 322 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 322 ~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
++++.|-+.....+-++...+.++++-+.+|+..
T Consensus 676 ------~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~N 709 (881)
T COG5110 676 ------NVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLN 709 (881)
T ss_pred ------HHHHHHHHhccccchhHHHHHHHHhhccccCcch
Confidence 3567788888888888999999999999888543
No 334
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=62.52 E-value=1e+02 Score=29.50 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=65.1
Q ss_pred CChHHHHhhhCCC-----C-cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----------CCCHHHHHHH
Q psy9169 201 GTMPQILALVQPN-----T-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------TTDVETLSDI 264 (440)
Q Consensus 201 g~i~~L~~ll~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------~~d~~i~~~a 264 (440)
..+|.++..+... . +...+...+.++..|..++.- .-......++|.++.++- .+...++..|
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~A 288 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYA 288 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHH
Confidence 3567777776522 2 466777788888888887632 333456779999988872 1234788899
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhccCCCh--hHHHHHHHHHHHh
Q psy9169 265 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNI 313 (440)
Q Consensus 265 ~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~--~v~~~al~~L~nl 313 (440)
+..+..++..-...... +...+...+.+.|.++.. ....-|+..|+.+
T Consensus 289 A~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 289 ARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999988543322111 223334455555544432 2244455555443
No 335
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=61.93 E-value=1.4e+02 Score=27.94 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=87.2
Q ss_pred HHHHhcCCHHHHHHhhCC-----------------------CCHHHHHHHHHHHHHhhCCCchhHH--------------
Q psy9169 153 MTVINANAIPKFLQLLSS-----------------------PHLNLAEQATWALGNIAGDGARARD-------------- 195 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~-----------------------~~~~v~~~a~~~L~nl~~~~~~~r~-------------- 195 (440)
..+.+.|.||.|-+++.. |+..++.+-+..+-++|........
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 456778889888888742 1124788899999999873221111
Q ss_pred -------HHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhCCCC-CCC-HHHHhhHHHHHHHhhcCC---CHHHHH
Q psy9169 196 -------LLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNP-APD-FEKIKICLPLLNQLIHTT---DVETLS 262 (440)
Q Consensus 196 -------~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~-~~~-~~~~~~~~~~L~~ll~~~---d~~i~~ 262 (440)
.--..|.+..+++.+... .+...+-..+.|+-.+.++.++ ..+ +....|+++.++..+-++ +.++..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 111356677777776643 3466788888999999999865 233 344578999988776543 457889
Q ss_pred HHHHHHHHhccCChhhH
Q psy9169 263 DICWALSYISDGHNDKI 279 (440)
Q Consensus 263 ~a~~~L~~l~~~~~~~~ 279 (440)
.....|+.|...+....
T Consensus 163 ~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 99999999998887553
No 336
>KOG2038|consensus
Probab=61.12 E-value=2.3e+02 Score=30.10 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=86.5
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH
Q psy9169 242 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 321 (440)
Q Consensus 242 ~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 321 (440)
...++..|..+....=+.+...++.++..|..+.++.-.. ++..||.-|.+++..+...|-..|-+|.+..|...
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 3566777777777777899999999999999888876444 37788999999999999999999999998888654
Q ss_pred HHHHHcCCHHHHHHHhcCCC--hhHHHHHHHHHHHHhcC--ChHHHHHHhh
Q psy9169 322 DCVIQAGGLQKMKKLLSSSR--VNIVKEAAWTISNITAG--NSRQIDHVIQ 368 (440)
Q Consensus 322 ~~l~~~g~l~~L~~ll~~~~--~~i~~~a~~~L~nl~~~--~~~~~~~~i~ 368 (440)
..+ +..+-+++-.++ ...+..|..+|+.+.-. ..+....+|+
T Consensus 377 ~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 377 IVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred eeh-----HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 433 344666665553 45667788888887643 3344455554
No 337
>KOG1791|consensus
Probab=60.69 E-value=1.5e+02 Score=33.98 Aligned_cols=206 Identities=12% Similarity=0.080 Sum_probs=119.5
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC---cHHHHHHH---H
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT---PTTFLRNI---V 223 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~---~~~~~~~a---~ 223 (440)
..+..+++.|.+..+..-+++.++.++..|.|++...-.+-..........-.+-.++.+.+++. ++.+.... .
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 33447788899999999999999999999999887665443221122222233444555554332 12221111 1
Q ss_pred HHHHhhhhCCCCCCCHH----------HHhhHHHHHHHhhcCCCHHHHHHHHHH---HHHhccCChhhHHHHHhcCChHH
Q psy9169 224 WAISNLCRNKNPAPDFE----------KIKICLPLLNQLIHTTDVETLSDICWA---LSYISDGHNDKIQAVVDTGVVPR 290 (440)
Q Consensus 224 ~~L~~l~~~~~~~~~~~----------~~~~~~~~L~~ll~~~d~~i~~~a~~~---L~~l~~~~~~~~~~l~~~g~~~~ 290 (440)
.-.+.++-.+....... ..-..+|.+..++.+..++-...--|. +.......+ ..+.....+....
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~-D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCP-DYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCch-hhhHHhhcCcceE
Confidence 11223333321111111 112345666777766544433333333 333333333 3477788888999
Q ss_pred HHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHH-HHHHHHHHh
Q psy9169 291 LVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKE-AAWTISNIT 356 (440)
Q Consensus 291 Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~-a~~~L~nl~ 356 (440)
++....++ +..-+.-.+.+|++-+.-.....+.+-..|+..++..++.++ ++...+. ..-.+.++-
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 88888775 334455677788887776666777778899999999999987 3445555 444444443
No 338
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=60.63 E-value=80 Score=24.74 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=47.4
Q ss_pred HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhH-HHHHHHHHHHhhcCC
Q psy9169 242 IKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTI-LTAALRTVGNIATGN 317 (440)
Q Consensus 242 ~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v-~~~al~~L~nl~~~~ 317 (440)
...++|.+...+. +..++.+..+...++.|+...+ ++..++..+++.+ .+....- ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4568899999998 7788999999999999996544 1122344444443 3332222 478899999888543
No 339
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=59.83 E-value=57 Score=30.97 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhcC--CHHHHHHhhCCCC---HHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 132 NTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLSSPH---LNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g--~i~~L~~lL~~~~---~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
.+|..|+.++..+... +.....++..+ ++.-|+.++.-++ ..++..|+.+|..|+.+...+.+.+
T Consensus 237 ~iRllAi~~l~~~~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4566666666666543 45555666666 9999999998755 7899999999999998776665544
No 340
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=59.50 E-value=1.3e+02 Score=26.81 Aligned_cols=129 Identities=11% Similarity=0.079 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC------------------HHHHHHHHHHHHHhccCChh
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD------------------VETLSDICWALSYISDGHND 277 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d------------------~~i~~~a~~~L~~l~~~~~~ 277 (440)
.......|..+..|...+ .........++++.+.+.|..-| ..+...=...|+.++....
T Consensus 78 ~~y~~vGc~L~~~Ll~~~-eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~- 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSP-EGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPN- 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCc-HHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChh-
Confidence 445555566666666553 33333334555555555553221 1223344456677765554
Q ss_pred hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
..+.+-+.++...+..+....+. ......++.++=.+.+.... ..|-..|.+++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44777888999999999877533 22222355665444443333 33567888888899999988887764
No 341
>KOG2549|consensus
Probab=59.06 E-value=2.1e+02 Score=29.02 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=70.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-C-------CChHHHHHHHHHHHHHhC
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D-------ENPNTQFEATWALTNIAS 146 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-~-------~~~~i~~~a~~~L~nla~ 146 (440)
-+..+.+.+.++|+..+.+|+..|+. ++-+.. .+|.|+.++. . .|-.+....+..+..|..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 35667777778888888888888751 122333 4788888882 1 233445556666666653
Q ss_pred CCcHHHHHHHhcCCHHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC
Q psy9169 147 GTSEQTMTVINANAIPKFLQLLSS----------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 211 (440)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~ 211 (440)
. +...-.-.-.-++|.++.++-+ .+..+|.-|+..+..++.+-...-+. +...++..+.+.+.
T Consensus 277 N-p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 277 N-PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALL 349 (576)
T ss_pred C-CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhc
Confidence 3 4332222223567777776643 22567888888887777543222111 33334444554444
No 342
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.33 E-value=22 Score=26.18 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=45.5
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----cCCCHHHHHHHHHHHH
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALS 269 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~d~~i~~~a~~~L~ 269 (440)
.+..++.|+..++.+..+.+++...+.|+.++..... .....+.+.+...+ .++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4556788899988777778999999999999987652 12233344444443 4566777777766653
No 343
>KOG0392|consensus
Probab=58.32 E-value=1.4e+02 Score=33.50 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
..+++.++|+|..+..+-+ .......+..+.+++..+..+++...+..+.+....-.+.... .-.-+++..+..|
T Consensus 143 apVre~caq~L~~~l~~~~----~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~-~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMD----ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQ-LLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhh----hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 4788899999998887753 2344566777777887777777777777666655422222121 1124577778888
Q ss_pred cCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChh--HHHHHHHHHHHHhcCChHHHHHHhhcCcc
Q psy9169 296 DSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVN--IVKEAAWTISNITAGNSRQIDHVIQEGEL 372 (440)
Q Consensus 296 ~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~--i~~~a~~~L~nl~~~~~~~~~~~i~~~~~ 372 (440)
.+.+..++..|..++.-++..-.. ..+.+. .++..+...+..-+.- -.......+..++... ++..+..
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~--evl~l~~---- 289 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN--EVLDLFE---- 289 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH--HHHHHHH----
Confidence 888888888888877666543311 111111 1223333332221110 0000111111222111 1111111
Q ss_pred hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 373 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 373 ~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
..=.+-|.++.+...++|.-..++..+...+..+.+.++.
T Consensus 290 ----~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 290 ----QQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred ----HhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111246778888888888888999999999999876643
No 344
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.30 E-value=54 Score=25.42 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc------cCCChHHHHHHHHHHHHHh
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL------DDENPNTQFEATWALTNIA 145 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL------~~~~~~i~~~a~~~L~nla 145 (440)
..+..|.+.|.+.++.+++.|+..+-.++...+.+....+.....+..++.+. ...+..++..+...+...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45677777888899999999999999887766544455566666666665431 2346677877777666543
No 345
>KOG2676|consensus
Probab=58.18 E-value=10 Score=35.56 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh--cCCChhHHHHHHHHHHHHhcCChH
Q psy9169 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll--~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
+..+.|+++|...++..+.+.+.|+++.++.-- ++.+|-+++....++.++..++.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~ 433 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIE 433 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchh
Confidence 367899999999998899999999999887644 345788999999999999987654
No 346
>KOG2549|consensus
Probab=55.60 E-value=2.3e+02 Score=28.68 Aligned_cols=137 Identities=10% Similarity=0.089 Sum_probs=80.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-------CcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 165 LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-------TPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 165 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
...+-..++..+..|+..|.. | +.. ...+|.++.++..+ .+..++..+...++.|..++ ...
T Consensus 213 t~a~~g~~~~~r~eAL~sL~T---D-sGL------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np-~i~ 281 (576)
T KOG2549|consen 213 TEACTGSDEPLRQEALQSLET---D-SGL------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP-NIF 281 (576)
T ss_pred HHHHhcCCHHHHHHHHHhhcc---C-ccH------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC-ccc
Confidence 333334555555555555543 2 111 12466666666532 34677777888888888776 222
Q ss_pred CHHHHhhHHHHHHHhhcC----------CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHH
Q psy9169 238 DFEKIKICLPLLNQLIHT----------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTA 305 (440)
Q Consensus 238 ~~~~~~~~~~~L~~ll~~----------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~ 305 (440)
-..++..++|.++.++-. +...++.-|+..+.+++.......+. ++..+...+.+.+.++. .....-
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhh
Confidence 334668899998888721 22457777888888888766554443 44556666666665542 334444
Q ss_pred HHHHHHHh
Q psy9169 306 ALRTVGNI 313 (440)
Q Consensus 306 al~~L~nl 313 (440)
|+..|..+
T Consensus 361 ai~gL~~l 368 (576)
T KOG2549|consen 361 AIAGLSEL 368 (576)
T ss_pred HHHHHHHh
Confidence 55554444
No 347
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=55.34 E-value=1.4e+02 Score=30.02 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=60.7
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCCh
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNS 360 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~ 360 (440)
.++++.+++.+..+ .+..--++.++ +- +.....+.+.+.++++.|+.+|... ++.++..|+-+|+.|..-+.
T Consensus 20 ~~~v~~llkHI~~~--~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP--AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCc--HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 36777777777544 44444555554 11 2224556667889999999999843 56899999999998875322
Q ss_pred HHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 361 RQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 361 ~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
..-...-..-..+++...|.....+++|.+
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~ 125 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLD 125 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHH
Confidence 111100000113455555666666666665
No 348
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.06 E-value=72 Score=32.05 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC-------------cHHHHHHHhcCCHHHHHHhhCC-CCHH
Q psy9169 110 IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-------------SEQTMTVINANAIPKFLQLLSS-PHLN 174 (440)
Q Consensus 110 ~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~-------------~~~~~~i~~~g~i~~L~~lL~~-~~~~ 174 (440)
++.+.+.++|+.|+.+| .+.+++++..|+.+|..|..-+ ....+.++....+..|+..+-. ....
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 45566789999999999 6677889999998888775322 2334455555666666666553 2234
Q ss_pred HHHHHHHHHHHhh
Q psy9169 175 LAEQATWALGNIA 187 (440)
Q Consensus 175 v~~~a~~~L~nl~ 187 (440)
....++.++..+.
T Consensus 135 ~lvn~v~IlieLI 147 (475)
T PF04499_consen 135 SLVNGVSILIELI 147 (475)
T ss_pred hHHHHHHHHHHHH
Confidence 4445555555554
No 349
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.95 E-value=87 Score=27.23 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHH-HHHHhccCChhhHHHHHh
Q psy9169 207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICW-ALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~-~L~~l~~~~~~~~~~l~~ 284 (440)
..+..+.. .+.+..++.++....... ....++.+-.++.. ++..+.-..|. +++.+....
T Consensus 57 ~~L~~~~~-~E~~~la~~il~~~~~~~--------~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--------- 118 (213)
T PF08713_consen 57 DELWESGY-REERYLALLILDKRRKKL--------TEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--------- 118 (213)
T ss_dssp HHHHCSSC-HHHHHHHHHHHHHCGGG----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH---------
T ss_pred HHHcCCch-HHHHHHHHHHhHHHhhhh--------hHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh---------
Confidence 33444444 555555555554322111 11245556666654 34444444423 333333211
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~ 364 (440)
....+.+.+.+.++++-++..++.++....... ... .++..+...+.+++.-+++...|+|..++...++...
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 234677788888999888888877665554441 112 1344555666777889999999999999998887765
Q ss_pred HHhh
Q psy9169 365 HVIQ 368 (440)
Q Consensus 365 ~~i~ 368 (440)
..+.
T Consensus 192 ~~l~ 195 (213)
T PF08713_consen 192 EFLQ 195 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 350
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=53.71 E-value=48 Score=23.29 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy9169 221 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289 (440)
Q Consensus 221 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~ 289 (440)
+.+|+.+.|-..+ .........+...+..-+..-++....+++|.++.+-..+.+.++.+.+...+.
T Consensus 3 ~il~~fa~LNy~P--~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 3 SILLPFARLNYQP--PNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 4566666666443 222223355666666667777899999999999999998888877776655443
No 351
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.59 E-value=18 Score=27.90 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHH
Q psy9169 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLA 176 (440)
Q Consensus 135 ~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~ 176 (440)
...+..|..++.. |+.-..+++.|+++.|+.+|.++|.++.
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3456677777754 7777889999999999999999887664
No 352
>KOG4524|consensus
Probab=53.04 E-value=58 Score=35.07 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=69.7
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc----cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYIS----DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~----~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
...+..++.....+|.+.+-.++..++.++.... ...+.. -.++ +..=|.++..+...++-+...|+.+|-+++
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L-lPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL-LPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH-hHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3455677888888999999999999999887644 333322 2222 345678888899999999999999999999
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhc
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~ 338 (440)
....++...=+-..++|.+-.++.
T Consensus 876 ~~sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 876 KYSGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 766554432222357777776654
No 353
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=52.84 E-value=44 Score=31.12 Aligned_cols=60 Identities=25% Similarity=0.275 Sum_probs=47.0
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC-------hHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc
Q psy9169 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-------SRQIDHVIQEGELNQMALLVEESGGLEKLEALQH 393 (440)
Q Consensus 328 g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-------~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~ 393 (440)
..+..+++-|.+.+...+..|+.+|..++.|. .+|++.+. ..+.++.++||+..|..++.
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~------~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIR------RNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHH------HHHHHHHHhhhhHHHHHHHH
Confidence 45667888888888889999999999999763 45555553 46788999999998887654
No 354
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=52.67 E-value=87 Score=25.81 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=80.2
Q ss_pred CcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHH
Q psy9169 148 TSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGD--GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 224 (440)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~--~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~ 224 (440)
+++.-+.+++...+..++++++. ....++.+.+..++-+..+ ++..-..++..+.+..++..--+-.++++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45566788889999999999988 4467777777777666522 22233456677778877776555556788888888
Q ss_pred HHHhhhhCCCCC-CCHHHH--hhHHHH---HHHhhcCCCHHHHHHHHHHHHHh
Q psy9169 225 AISNLCRNKNPA-PDFEKI--KICLPL---LNQLIHTTDVETLSDICWALSYI 271 (440)
Q Consensus 225 ~L~~l~~~~~~~-~~~~~~--~~~~~~---L~~ll~~~d~~i~~~a~~~L~~l 271 (440)
.|..|+-.-++. ..+... .+-+|. -+++..++|.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 888887543221 222111 223343 34566788888877776666554
No 355
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.49 E-value=87 Score=25.53 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHH-HHHhcc-C--CChHHHHHHHHHHHHHhC
Q psy9169 72 IKMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPI-CVELLD-D--ENPNTQFEATWALTNIAS 146 (440)
Q Consensus 72 ~~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~-Lv~lL~-~--~~~~i~~~a~~~L~nla~ 146 (440)
....+..|.+.|+ +.++.+++.|+..+-.++.........++...+.+.. |+.++. . ....++..++..+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3456777888887 4689999999988887776555444567777888886 888883 2 234788887777777653
No 356
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.45 E-value=2.6e+02 Score=27.80 Aligned_cols=104 Identities=12% Similarity=0.052 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC---CCCCHHHHhhHHHH
Q psy9169 172 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN---PAPDFEKIKICLPL 248 (440)
Q Consensus 172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~~~ 248 (440)
|+.+....+.++.-+-..-......++. ..+..+..+.++++++..-.....+++.+.+... +..-......++|.
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 4555555555555544443333333333 2455555566677777777777666666665431 11112345678888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 249 LNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 249 L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+...|..+-.+..-.+...++.|.+..+
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889988777888888888887775433
No 357
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=50.25 E-value=87 Score=27.33 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHH
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~ 380 (440)
.+...+.+.|..++.++..+...+.+. ++.+...+.......--.+.-++..+..++.+-+..+.+- ..+.+...+.
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~ 152 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLR 152 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHH
Confidence 577889999999999998877766654 4433333333211111245666777777666554444331 1334444455
Q ss_pred HcC----cHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 381 ESG----GLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 381 ~~g----~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
++| .++.|..+....+..|.+.=..|...++.
T Consensus 153 ~~gr~~~~L~~L~~lc~~~g~pI~~nQ~lI~~~ll~ 188 (207)
T PF01365_consen 153 KHGRQPRYLDFLSSLCVCNGNPIPENQNLICQELLL 188 (207)
T ss_dssp ------------------------------------
T ss_pred HcCCChHHHHHHhhhcccCCcCCHHHHHHHHHHHcC
Confidence 444 33444444444333333333444434443
No 358
>KOG2073|consensus
Probab=49.70 E-value=2.1e+02 Score=30.91 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCCC-c----HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcH------HHHHHHhcCCHHH
Q psy9169 96 RSARKMLSKERHP-P----IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSE------QTMTVINANAIPK 163 (440)
Q Consensus 96 ~~l~~lls~~~~~-~----~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~------~~~~i~~~g~i~~ 163 (440)
-.|.++++....+ + ++.+-+..+++.+++++ .+.++.++..|...|+.|+..+.. ..+.+...+.+..
T Consensus 164 D~Llkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieq 243 (838)
T KOG2073|consen 164 DFLLKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQ 243 (838)
T ss_pred HHHHHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHH
Confidence 4455565433211 2 44555679999999999 566689999999999999876332 3334444444444
Q ss_pred HHHhh
Q psy9169 164 FLQLL 168 (440)
Q Consensus 164 L~~lL 168 (440)
|+..+
T Consensus 244 Ll~~m 248 (838)
T KOG2073|consen 244 LLKIM 248 (838)
T ss_pred HHHHH
Confidence 44433
No 359
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=49.21 E-value=61 Score=25.00 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=49.7
Q ss_pred CChHHHHHhccCCC----hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcC-
Q psy9169 286 GVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 358 (440)
Q Consensus 286 g~~~~Lv~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~- 358 (440)
|++..+...+.+.+ ..-+..++++++.+......... .+.|.++..|.+. .++++..|+.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665544 24588899999988763322222 3567777777653 567888888777776653
Q ss_pred ChHHHHHHhh
Q psy9169 359 NSRQIDHVIQ 368 (440)
Q Consensus 359 ~~~~~~~~i~ 368 (440)
..+++..+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4555555554
No 360
>KOG0803|consensus
Probab=48.96 E-value=4.7e+02 Score=30.07 Aligned_cols=257 Identities=11% Similarity=0.151 Sum_probs=133.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHH---H-hccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV---E-LLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv---~-lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
..+..+++.|...|+.++..|+..+..+...... +.. .|++|... . +..+.+..+|...-.++.++...-.
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~---e~~--~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDT---EEL--KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccc---hHH--hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999998754331 222 23444333 3 3378899999999999988875311
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH--HhcCChHHHHhhhCCCC-------------
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL--LGLGTMPQILALVQPNT------------- 214 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i--~~~g~i~~L~~ll~~~~------------- 214 (440)
........ ..+|...-.-.+....+-..|-..+...... ...+... ....+.+.+.+.+-..+
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 11111111 2333333333334445555555555554432 1111211 12223333333322110
Q ss_pred -----cHHHHHHHHHHHHhhhhCCCCCCCHHH----Hhh--HHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q psy9169 215 -----PTTFLRNIVWAISNLCRNKNPAPDFEK----IKI--CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 283 (440)
Q Consensus 215 -----~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~--~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~ 283 (440)
...+...++-++..+.....+..+... ... --..+..++.+..+.+..+....+..++..-......-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~ 273 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESE 273 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhh
Confidence 134455555566655532212122111 111 124566777888889999999999888876554311111
Q ss_pred hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HH--HHHHHcCCHHHHHHHhc
Q psy9169 284 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QT--DCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 284 ~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~--~~l~~~g~l~~L~~ll~ 338 (440)
..-+-+.+.....+.+ .+......++.+....-+. .. ......|+++.+.+++.
T Consensus 274 ~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 274 KNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 2223344444444444 3444444444433332222 11 12245678899998888
No 361
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=47.85 E-value=2.4e+02 Score=26.40 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=84.3
Q ss_pred HHHHhcCChHHHHhhhCC------CC----------------cHHHHHHHHHHHHhhhhCCCC-----------------
Q psy9169 195 DLLLGLGTMPQILALVQP------NT----------------PTTFLRNIVWAISNLCRNKNP----------------- 235 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~------~~----------------~~~~~~~a~~~L~~l~~~~~~----------------- 235 (440)
..+.+.|+||.|-+++.. .. +..++...+..+.++|.....
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 455667777777776641 00 124667777888888873211
Q ss_pred ----CCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChh-hH-HHHHhcCChHHHHHhccCCC---hhHHH
Q psy9169 236 ----APDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHND-KI-QAVVDTGVVPRLVELLDSEE---TTILT 304 (440)
Q Consensus 236 ----~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~-~~-~~l~~~g~~~~Lv~lL~~~~---~~v~~ 304 (440)
........+.+..+++.+.. .+...+...+.++-....+.+. .. ..+.+.|+++.++.-+-++. ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 11111235667777766653 3556777777888888877665 23 46678899999999886553 35888
Q ss_pred HHHHHHHHhhcCChHHHH
Q psy9169 305 AALRTVGNIATGNDHQTD 322 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~ 322 (440)
.+.-.||.+..++....+
T Consensus 163 ~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHCCCHHHHH
Confidence 899999999998865443
No 362
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.73 E-value=1.9e+02 Score=25.10 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=84.9
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHHHHH
Q psy9169 121 ICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQA-TWALGNIAGDGARARDLLL 198 (440)
Q Consensus 121 ~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nl~~~~~~~r~~i~ 198 (440)
.+..++.++..+.+..|+.++.......+. ..++.+-.++.. ++..+.... ..+++.+....
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-------- 118 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH-------- 118 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--------
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--------
Confidence 334455777788888888888764422111 135556666665 446666655 44555543221
Q ss_pred hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
....+.+..-+.+++ .-.++.++-++...... .....++..+..++.+++..++..+.|+|..++..+++.
T Consensus 119 -~~~~~~~~~W~~s~~-~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 119 -PEALELLEKWAKSDN-EWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp -GGHHHHHHHHHHCSS-HHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred -HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 223444555555554 66667666555554444 123456667777788889999999999999999988877
Q ss_pred HHHHHhc
Q psy9169 279 IQAVVDT 285 (440)
Q Consensus 279 ~~~l~~~ 285 (440)
...++..
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 363
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=47.72 E-value=2.2e+02 Score=26.01 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhcCC----------------hHHHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcC
Q psy9169 301 TILTAALRTVGNIATGN----------------DHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAG 358 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~----------------~~~~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~ 358 (440)
.+...++..+.|+..-. +.....+.+.|+...|+.+..+.+ ........-++..|..+
T Consensus 135 ~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 135 LIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 46667777777776531 223445667899999999998873 33444556666666655
No 364
>KOG0301|consensus
Probab=47.45 E-value=3.5e+02 Score=28.20 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
|.+..-.++.||++|+..+...++....- -+..+++-+
T Consensus 688 d~EA~yR~l~AlgtL~t~~~~~~~~A~~~-~v~sia~~~ 725 (745)
T KOG0301|consen 688 DLEAIYRLLVALGTLMTVDASVIQLAKNR-SVDSIAKKL 725 (745)
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHhc-CHHHHHHHH
Confidence 44556667778888887776554433222 244444444
No 365
>KOG2676|consensus
Probab=47.31 E-value=25 Score=33.21 Aligned_cols=63 Identities=8% Similarity=-0.027 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169 137 ATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLG 199 (440)
Q Consensus 137 a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (440)
....+++++...++..+.+.+.|+++.++.-.. +.+|-+++..+.++.++..++...++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 567899999999999999999999998776554 455999999999999999998888776643
No 366
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=47.00 E-value=53 Score=26.43 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCC----CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 245 CLPLLNQLIHTT----DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 245 ~~~~L~~ll~~~----d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
++..+.+++... +.++...++.++......-+ ...+.+.++++.+.++|.++ .++..|+.||
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 444444544432 27889999999998887444 46677788999999999655 4588888765
No 367
>KOG2229|consensus
Probab=46.04 E-value=3.3e+02 Score=27.44 Aligned_cols=125 Identities=10% Similarity=0.132 Sum_probs=67.2
Q ss_pred CChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHH
Q psy9169 286 GVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ 362 (440)
Q Consensus 286 g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~ 362 (440)
|..+.|...+... ..+++...+..|+.++.... +.=.|+++.|..++.....++.+....+......+ .++-
T Consensus 236 ~fAEkLfk~~~~~~er~E~klm~~~lisRliG~Hk-----L~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~ 310 (616)
T KOG2229|consen 236 GFAEKLFKQLLACKERFEVKLMLMKLISRLIGIHK-----LFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDI 310 (616)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhH-----HHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHH
Confidence 5555666555443 33566667777777764332 44568999999999876555555444433333333 4555
Q ss_pred HHHHhh--------cC--------cchHHHHHHHHc------CcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 363 IDHVIQ--------EG--------ELNQMALLVEES------GGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 363 ~~~~i~--------~~--------~~~~~~~~l~~~------g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
++.++. -+ +.+..+.+...+ ..++-|...-.+....|-.+|..+|.-|...-+
T Consensus 311 iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~RvplaMteeLLqDLa~YK~sk~K~V~maarSLI~L~Rev~P 385 (616)
T KOG2229|consen 311 IEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPLAMTEELLQDLASYKTSKKKVVMMAARSLIALYREVLP 385 (616)
T ss_pred hhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcchhhcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHCH
Confidence 555555 00 122222222221 123444444445566677777777766654333
No 368
>KOG4337|consensus
Probab=45.72 E-value=3.7e+02 Score=27.98 Aligned_cols=261 Identities=13% Similarity=0.069 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy9169 22 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 101 (440)
Q Consensus 22 ~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~a~~~l~~l 101 (440)
++..+---.+..++|-+||+|.+.--- + .....+|.|+..|.+-....-..|+.-+.--
T Consensus 328 ~~~~l~y~~~iq~aR~ak~qe~~~~l~---~------------------En~eVLpqlvdalg~vqT~ds~~a~~dfL~~ 386 (896)
T KOG4337|consen 328 EKHSLLYSQIIQEARLAKRQEWEAALQ---Y------------------ENDEVLPQLVDALGGVQTADSITAADDFLFG 386 (896)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH---h------------------hhhhHHHHHHHHhccccchhhHHHHHHHHhc
Confidence 455555667778888888888654321 1 0124588899888865544444444333322
Q ss_pred hcCCCCCcHHHHHHhCCHHHHHHhc---cCCChHHHHHHHHHHHHHhCCCcH-HHHHHHhcCCHHHHHHhhCCCCH---H
Q psy9169 102 LSKERHPPIDELIEAGVVPICVELL---DDENPNTQFEATWALTNIASGTSE-QTMTVINANAIPKFLQLLSSPHL---N 174 (440)
Q Consensus 102 ls~~~~~~~~~ii~~g~i~~Lv~lL---~~~~~~i~~~a~~~L~nla~~~~~-~~~~i~~~g~i~~L~~lL~~~~~---~ 174 (440)
.|..... .. ...+.++..| .+++.++....+.-+..-+.++.. +++-++ -++..|+..+..... -
T Consensus 387 ~S~sss~--~~----~l~e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s~~~~re~v~--~iv~tlir~~~~~gve~~~ 458 (896)
T KOG4337|consen 387 ISQSSSN--NE----KLHEQLLYWLGSADHPSEETIATLLNKRCEASISSLNSCREGVE--TIVNTLIRDLTAGGVEVRV 458 (896)
T ss_pred cccccch--hH----HHHHHHHHHhhccCCCcHHHHHHHHHHHhhhhhhhhHHHhhhHH--HHHHHHHHHhhCCCcccHH
Confidence 2332211 11 1234444444 455555544433333332222222 333332 245566665554432 1
Q ss_pred HHHHHHHHHHHhhCCCch--hHHHH---H---hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169 175 LAEQATWALGNIAGDGAR--ARDLL---L---GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246 (440)
Q Consensus 175 v~~~a~~~L~nl~~~~~~--~r~~i---~---~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 246 (440)
+.+.--.+|+-+....+. .++.+ . ...+++.|+..-..+..+++-..++.++..+.-.. ........+-
T Consensus 459 l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~p~~s~~atsAl~~f~l~s---i~~~~kk~~~ 535 (896)
T KOG4337|consen 459 LEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEKPEQSMRATSALAEFFLRS---ICQTKKKIGA 535 (896)
T ss_pred HHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCCcchhHHHHHHHHhcCchh---hhHHHHHhcc
Confidence 222222244444422121 11211 1 12345556655555555555566666665443221 1111112222
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 324 (440)
Q Consensus 247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l 324 (440)
|...+...--+..++..|+.+|.++.....+ +..++..|...+.+.....+.++..++...|+....+
T Consensus 536 ~i~hq~~k~f~~t~rTlA~dIiL~~~P~~~~----------v~n~ll~l~~~dqE~~~Y~l~~i~ml~~~~p~~ka~f 603 (896)
T KOG4337|consen 536 PITHQLIKLFRNTTRTLAIDIILKCVPDHQN----------VANLLLTLNPDDQEKWHYLLKAIEMLSGNKPELKAEF 603 (896)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHhcCccHHH----------HHHHHHHhCCChHHHHHHHHHHHHHHhccCchHHHHH
Confidence 2222333222333556666666554432221 3344445666666777778888777766666554433
No 369
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=45.31 E-value=53 Score=23.46 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 376 ALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 376 ~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
...+.+.+.-..+..|..|++++|...|..++..|-
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 567777777788889999999999999999998873
No 370
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=44.91 E-value=1.3e+02 Score=25.76 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=49.7
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 289 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
+.+.....+++.-++..++.++........ ... .+++.+-.++.+.+.-+++...|+|..++...++.+..+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 667777888888888888877776554311 111 234555556666778899999999999998766654333
No 371
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.84 E-value=1.2e+02 Score=28.86 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=47.3
Q ss_pred HHHHHHHhc--cCChhhHHHHHhcC--ChHHHHHhccCCC---hhHHHHHHHHHHHhhcCChHHHHHHH------HcCCH
Q psy9169 264 ICWALSYIS--DGHNDKIQAVVDTG--VVPRLVELLDSEE---TTILTAALRTVGNIATGNDHQTDCVI------QAGGL 330 (440)
Q Consensus 264 a~~~L~~l~--~~~~~~~~~l~~~g--~~~~Lv~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~l~------~~g~l 330 (440)
=+.||.+++ ..++.....++..+ ++..|++++...+ ..++..|+++|.-|+.......+.+- .+|++
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL 318 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGIL 318 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccH
Confidence 344444442 23444556777776 9999999997653 47999999999999986654444222 35666
Q ss_pred HHHHH
Q psy9169 331 QKMKK 335 (440)
Q Consensus 331 ~~L~~ 335 (440)
..+++
T Consensus 319 ~~llR 323 (329)
T PF06012_consen 319 PQLLR 323 (329)
T ss_pred HHHHH
Confidence 66654
No 372
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=44.71 E-value=1e+02 Score=25.41 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=75.8
Q ss_pred chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC--CHHHHhhHHHHHHHhh-cCCCHHHHHHHHHH
Q psy9169 191 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP--DFEKIKICLPLLNQLI-HTTDVETLSDICWA 267 (440)
Q Consensus 191 ~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~ 267 (440)
+..=+.+.+..++..++++++...+..+....+.+++-|..+-.... -.....+.+..++..- .-.|+++...=...
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 44557888899999999999986667888888888887776642222 1222344555444332 33577777777777
Q ss_pred HHHhccC-ChhhHHHHHhc--C---ChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 268 LSYISDG-HNDKIQAVVDT--G---VVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 268 L~~l~~~-~~~~~~~l~~~--g---~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
|..|+-. +.+.++.+.+. + +...-+++..|++.-++.++-.++-|+
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 7666632 22233333332 3 344445666788877777666555554
No 373
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=44.50 E-value=40 Score=31.41 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=43.5
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-------h-------HHHHHHHHcCCHHHHHHHhc
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGN-------D-------HQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-------~-------~~~~~l~~~g~l~~L~~ll~ 338 (440)
...+..+++-|.+.+...+..|+++|..++.|. . .+...+.+.|+++.|..+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456788999999988889999999999999864 1 23345678899999999885
No 374
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.76 E-value=61 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=28.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDG 190 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~ 190 (440)
+++.|+.-|.+++++|...|+.+|...|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5788999999999999999999999999875
No 375
>KOG2149|consensus
Probab=43.23 E-value=2.4e+02 Score=27.37 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=83.5
Q ss_pred ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169 202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 281 (440)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~ 281 (440)
-+..|+..+.+.. ..++..+...|..+..+. +..-......+++.+..++.+.+..++.....++-++....-.....
T Consensus 59 tlkeLl~qlkHhN-akvRkdal~glkd~l~s~-p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHN-AKVRKDALNGLKDLLKSH-PAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCch-HhhhHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 3556667777666 888888888888777663 33223344677888888888888888888888877755332211111
Q ss_pred HHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHHHHHHhc
Q psy9169 282 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 282 l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~ 338 (440)
..-.=+++.+-..|.|..+.++..++..+.-++... |........ +++-+..++.
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 111223555666677888899999999998887644 333333322 4444444443
No 376
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=43.22 E-value=70 Score=23.47 Aligned_cols=67 Identities=9% Similarity=0.153 Sum_probs=43.6
Q ss_pred HhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCC---HHHHHHHhcCCChhHHHHHHHHHH
Q psy9169 283 VDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGG---LQKMKKLLSSSRVNIVKEAAWTIS 353 (440)
Q Consensus 283 ~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~---l~~L~~ll~~~~~~i~~~a~~~L~ 353 (440)
.+..++.++..++. .++.+++...+.|+.+++...... +.+|. +..|-....++++.+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456788888864 457799999999999998765433 34553 333444444556677776666553
No 377
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=43.14 E-value=19 Score=22.38 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 267 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 267 ~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
+|+.+...++.. +-...+...+...|.++++.|+..|+.+|
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 344555444422 22234567777788889999999887653
No 378
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=42.96 E-value=1.7e+02 Score=23.13 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh---cCCChhHHHHHHHHHHHHhc-CChHHHHHHhhcCcchHHH
Q psy9169 301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL---SSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGELNQMA 376 (440)
Q Consensus 301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll---~~~~~~i~~~a~~~L~nl~~-~~~~~~~~~i~~~~~~~~~ 376 (440)
..-...+.-|+..+... ..... ++..|..-| ...++.+...|+..|-.|+. |++..+..+-+ ..
T Consensus 18 gp~~~~l~eIa~~t~~~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~------~~ 85 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNS-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRD------HI 85 (125)
T ss_dssp S--HHHHHHHHHHTTSC-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHH------TH
T ss_pred CcCHHHHHHHHHHHhcc-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHH------HH
Confidence 34445556666666555 33332 346677777 44567888899999999986 45544333311 11
Q ss_pred HHHHHcCcHHHHHHHhc------CCcHHHHHHHHHHHHhhCC
Q psy9169 377 LLVEESGGLEKLEALQH------HENETVYQKCYKIISMAFN 412 (440)
Q Consensus 377 ~~l~~~g~l~~l~~L~~------~~~~~v~~~a~~il~~~~~ 412 (440)
.. +..+..... .....|+++|..+++-+.+
T Consensus 86 ~~------I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 86 DI------IRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HH------HHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HH------HhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 22 222333322 1124699999999998764
No 379
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=42.56 E-value=2.6e+02 Score=25.32 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=47.6
Q ss_pred hhHHHHHHHhhcCCCHH--------HHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHHHH
Q psy9169 243 KICLPLLNQLIHTTDVE--------TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGN 312 (440)
Q Consensus 243 ~~~~~~L~~ll~~~d~~--------i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L~n 312 (440)
..++|.++.++..++.. +....-.++..++. |=++.|..++.+++ .-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34789999999765531 22333334444443 44666667776664 4688999999999
Q ss_pred hhcCChHHHHHHHH
Q psy9169 313 IATGNDHQTDCVIQ 326 (440)
Q Consensus 313 l~~~~~~~~~~l~~ 326 (440)
++...+..++.+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 99887777776654
No 380
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=42.28 E-value=2.5e+02 Score=25.02 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC---------C---------hhHHHHHHHHHHHhhcCChH
Q psy9169 258 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---------E---------TTILTAALRTVGNIATGNDH 319 (440)
Q Consensus 258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~---------~---------~~v~~~al~~L~nl~~~~~~ 319 (440)
......+|..+..|...++ ....+.+.++++.+.+.|..- + ..+...=...||.++. ++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~e-G~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPE-GIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCcH-HHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Chh
Confidence 4556667777777776644 335566778788777776432 1 1123333456777754 555
Q ss_pred HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy9169 320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETV 399 (440)
Q Consensus 320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v 399 (440)
..+.+-+.|++..+.++....+. .....-+|+++=-+.+.+. +. .|...+.++++.+
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~------------R~---------iLsKaLt~~s~~i 212 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHP------------RI---------ILSKALTSGSESI 212 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHH------------HH---------HHHHHHhcCCHHH
Confidence 77888889999999999987532 1122225555533333222 11 2445678889999
Q ss_pred HHHHHHHHHhhC
Q psy9169 400 YQKCYKIISMAF 411 (440)
Q Consensus 400 ~~~a~~il~~~~ 411 (440)
+..|.+.|..+.
T Consensus 213 Rl~aT~~L~~ll 224 (226)
T PF14666_consen 213 RLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHh
Confidence 999999887664
No 381
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=42.07 E-value=1.6e+02 Score=22.82 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcC
Q psy9169 299 ETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSS 339 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~ 339 (440)
+.++...++.+|..++.| ..+....+.+..+++.+..++..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 345677788888888888 67777888888888888888754
No 382
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.24 E-value=35 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhc
Q psy9169 344 IVKEAAWTISNITA 357 (440)
Q Consensus 344 i~~~a~~~L~nl~~ 357 (440)
+|..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57889999999853
No 383
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=40.68 E-value=1.4e+02 Score=24.61 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 319 (440)
...|+..|+.|..+.. +.+|+.+|.+.+..+...|..+|.+...-.+.
T Consensus 80 ~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDa 127 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN-----------VQPLIDLLKSDDEELAEEAAEALKNTLLVYDA 127 (154)
T ss_dssp HHHHHHHHTTS-SSTT-----------HHHHHHGG--G-TTTHHHHHHHHHT--TTCCH
T ss_pred HHHHHHHHhhccCCCc-----------HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhh
Confidence 4455566665555443 78999999888889999999999987765543
No 384
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=40.67 E-value=40 Score=21.26 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=11.8
Q ss_pred CChHHHHHH-HHHHHHHHHH
Q psy9169 19 KSFDEMRRK-RCEMNVELRK 37 (440)
Q Consensus 19 ~~~~~~r~~-R~~~~~~lRk 37 (440)
.|++|+++| |++....+|+
T Consensus 11 ~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 11 MDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 588988763 5555555543
No 385
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=40.49 E-value=4.7e+02 Score=31.30 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHhcC---CHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169 135 FEATWALTNIASGTSEQTMTVINAN---AIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLL 197 (440)
Q Consensus 135 ~~a~~~L~nla~~~~~~~~~i~~~g---~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i 197 (440)
..-+..+..++..++..+..+.+.. .++.|..++..+- ..++..+..+|+.++..++..+..+
T Consensus 582 ~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~~~~~i 648 (1691)
T PF11894_consen 582 SAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPEIANQI 648 (1691)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4556778888888777777776643 6999999999876 6788889999999964445544433
No 386
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=39.65 E-value=4.6e+02 Score=30.61 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=83.1
Q ss_pred cCChHHHHhhhC---CCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 200 LGTMPQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 200 ~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
...++.++.+.. .+.++.++.-+......+....+ .....+++..|+..+.+.+..-...|+.+|..|+...+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 345566655543 33347777777777777776652 23456788888888877776667899999999997655
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHH----HHHHH
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE----AAWTI 352 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~----a~~~L 352 (440)
...... +..+..++..+.+-+..-......+++.++.........+. ..+--.+-+.|.+.++.+++. |+..+
T Consensus 506 ~~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~-del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 506 SELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQ-DELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HHHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHH-HHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhH-HHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 432221 23344455555544444444567777777753322222222 234444556777777766654 44445
Q ss_pred HHHhc
Q psy9169 353 SNITA 357 (440)
Q Consensus 353 ~nl~~ 357 (440)
..+++
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55554
No 387
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=39.61 E-value=3.3e+02 Score=25.67 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC----CC----CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169 174 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PN----TPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245 (440)
Q Consensus 174 ~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 245 (440)
.++...+..+.......+.. . .+....+|+|+..+- +. .++++..-....+..+-..- ...-..+...+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~-~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-E-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI-QPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-H-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-H-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 35555666666665443332 2 234457777776432 11 23566666666666655543 22223344667
Q ss_pred HHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHH---HhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC---
Q psy9169 246 LPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAV---VDTGVVPRLVELLDSEETTILTAALRTVGNIATG--- 316 (440)
Q Consensus 246 ~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l---~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~--- 316 (440)
+...+.++.. +-|+.+..-...|..+........-.+ .=..++..++-.++|++.++...++.++..+...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 7777778764 347888777777777765432111110 0012366677778999999999999998888752
Q ss_pred -ChHHHHHHHHcC---CHHHHHHHhcCC-ChhHHHHHHHHHHHHh
Q psy9169 317 -NDHQTDCVIQAG---GLQKMKKLLSSS-RVNIVKEAAWTISNIT 356 (440)
Q Consensus 317 -~~~~~~~l~~~g---~l~~L~~ll~~~-~~~i~~~a~~~L~nl~ 356 (440)
+++....+...- ++..+..++.++ +...-+.-+.+|+++.
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 344445555433 334444444443 4555555566666665
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.60 E-value=1.8e+02 Score=22.65 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=58.3
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
+++.|+.-|.+++++|...|+.+|-..|... ...+.++... |.+..+-. ...-.+..+.+.+..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~~--p~l~~L~~--------~g~~Ll~~~lS~~~G----- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSLR--PSLDHLGD--------IGSPLLLRFLSTPSG----- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHcC--cHHHHHHH--------cCHHHHHHHHcchHH-----
Confidence 3788899999999999999999999988766 4555454432 22222111 122233333333222
Q ss_pred hhcCcchHHHHHHHHcCcHH-HHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 367 IQEGELNQMALLVEESGGLE-KLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 367 i~~~~~~~~~~~l~~~g~l~-~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
-..+.+.|.++ .+.......|.+-....-..+...|..
T Consensus 73 ---------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 73 ---------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred ---------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhc
Confidence 12333344333 234456667777666666666665543
No 389
>KOG2149|consensus
Probab=39.36 E-value=2.8e+02 Score=26.95 Aligned_cols=113 Identities=11% Similarity=0.111 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHH
Q psy9169 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDC 323 (440)
Q Consensus 245 ~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~ 323 (440)
-+.-|...+.+.+..++.+|+..|..+....+...+.- -..+++.+..+..+.+..++.....++-++.... ++....
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 34556666789999999999999887776544332211 1345777777777788888888888877755432 222222
Q ss_pred HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169 324 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 324 l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 359 (440)
++ .=+.+.+...|.+..+.++..+...|+-+....
T Consensus 138 ~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 22 124666777788888999999999999988654
No 390
>KOG0891|consensus
Probab=38.64 E-value=2e+02 Score=35.10 Aligned_cols=199 Identities=15% Similarity=0.113 Sum_probs=107.6
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
+.+..+...+.+..-.++..+...+++++..++...-.-+..-.+..+-.+..+....+.+++..-+..+....+.. -.
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~-i~ 643 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL-IS 643 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH-HH
Confidence 34444455556666678888888999998887754444443334444444444433333333333333222221111 11
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCC
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGH 275 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~ 275 (440)
-.....+..++..+.... ..+...+..++..||........... ...++.+.+.+.. .+..-+..+.++++++....
T Consensus 644 ~~v~~~l~~~~~~~~~~~-s~~~~~~~~~~~eL~~v~g~~~~~~~-~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQDPS-SGVEKAVLETIGELCAVGGEEMVKWV-DELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred hhcCchHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccchhhhcc-chHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 112233455555555555 57788888999999976532121111 2556666665543 45567788999999998654
Q ss_pred hhhHHHHHhc-CChHHHHHhccCC-ChhHHHHHHHHHHHhhcCCh
Q psy9169 276 NDKIQAVVDT-GVVPRLVELLDSE-ETTILTAALRTVGNIATGND 318 (440)
Q Consensus 276 ~~~~~~l~~~-g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~ 318 (440)
.-.+....+. -++..++..+... ...++..++..+|++-..++
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 4322221111 2344444444333 34678888888887655443
No 391
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.40 E-value=2e+02 Score=22.80 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc-CChHHHHHHHHc-CCHHHHHHHhcCCC--
Q psy9169 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT-GNDHQTDCVIQA-GGLQKMKKLLSSSR-- 341 (440)
Q Consensus 266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~l~~~-g~l~~L~~ll~~~~-- 341 (440)
.-|..++..+..... .+++.|.+-|.+.++.|+.-++++|-.+|. |++.+...+... .+|..+...--.++
T Consensus 23 ~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~ 97 (122)
T cd03572 23 EEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL 97 (122)
T ss_pred HHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence 344455544433322 246788888888889999999999999996 454555555443 23333333322122
Q ss_pred ------hhHHHHHHHHHHHHh
Q psy9169 342 ------VNIVKEAAWTISNIT 356 (440)
Q Consensus 342 ------~~i~~~a~~~L~nl~ 356 (440)
..||..|--++.-|.
T Consensus 98 ~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 98 KGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cCcchhHHHHHHHHHHHHHHh
Confidence 246666666665554
No 392
>KOG1087|consensus
Probab=38.14 E-value=79 Score=31.54 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=54.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cC-CChHHHHHHHHHHHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DD-ENPNTQFEATWALTNI 144 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~-~~~~i~~~a~~~L~nl 144 (440)
...+..|.+.|++.++.+++.|+..|--++.......-..|.+.++++-+|... .. .+..+|..++..|-.-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 356778888889889999999999887666554433345788899999999999 44 5677888777666543
No 393
>KOG4231|consensus
Probab=37.69 E-value=48 Score=32.97 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=54.1
Q ss_pred CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.....+-.+..+.+++++..|..+++|++.........+-+..+-..+++++..+.+.+-+.++.++.-+..
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 344555555677889999999999999998765444444444566778888888888888888888887764
No 394
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=37.55 E-value=98 Score=27.00 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC
Q psy9169 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 211 (440)
Q Consensus 132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~ 211 (440)
++...+...|..++.++.++...+.+. ++.++..+.......--.+..++..+..+++.....+.+. .+..++.++.
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~ 152 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLR 152 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHH
Confidence 566788999999999988877776643 3333333322211111245667777777877765555444 3888888887
Q ss_pred CCCcHHHHHHHHHHHHhhhhC
Q psy9169 212 PNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~ 232 (440)
... -....+..|..+|..
T Consensus 153 ~~g---r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 153 KHG---RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ---------------------
T ss_pred HcC---CChHHHHHHhhhccc
Confidence 533 123344555666654
No 395
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.04 E-value=1.9e+02 Score=22.23 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=46.2
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH-----Hh-cCCcHHHHHH
Q psy9169 329 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA-----LQ-HHENETVYQK 402 (440)
Q Consensus 329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~-----L~-~~~~~~v~~~ 402 (440)
++..|..-|.++++.++..|...|-.|+.+..+.. ...+.....+..+.. .. ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f------------~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF------------HQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH------------HHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 45667777888899999999999999987543322 222222222222221 11 2347899999
Q ss_pred HHHHHHhhC
Q psy9169 403 CYKIISMAF 411 (440)
Q Consensus 403 a~~il~~~~ 411 (440)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999998875
No 396
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=36.59 E-value=1.4e+02 Score=22.88 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=48.1
Q ss_pred CChHHHHHhccC----CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcC-
Q psy9169 286 GVVPRLVELLDS----EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 358 (440)
Q Consensus 286 g~~~~Lv~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~- 358 (440)
|++..+...+.+ .+...+..++++|+.+..-...... .+.|.++..|.+. .++++..|+.+-..+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555554 3456788999999998763333332 3456677777653 457888877776666543
Q ss_pred ChHHHHHHhh
Q psy9169 359 NSRQIDHVIQ 368 (440)
Q Consensus 359 ~~~~~~~~i~ 368 (440)
+.+.+..+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4455554443
No 397
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=36.42 E-value=4.4e+02 Score=26.18 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=73.8
Q ss_pred HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
++...+|.+..+|.++- .++.-.+...|+.|........-......++|.|..-.--....-.-.....|..+....+.
T Consensus 114 ~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 45567899999998776 67888888888887766521111123345555544221111111123333333333332222
Q ss_pred hHHHHHhcCC----hHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHH
Q psy9169 278 KIQAVVDTGV----VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWT 351 (440)
Q Consensus 278 ~~~~l~~~g~----~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~ 351 (440)
.+ ...|- +...=+++.+...+ ..+...|..+...-+. ..+..+. .++..+..-|++ ..+...+.-+..
T Consensus 193 ~i---~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 193 FI---VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp G-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred hh---cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 21 22222 23333445544322 3466666666654432 2222222 245555555553 345555555555
Q ss_pred HHHHhc-CChHHHHHHhh
Q psy9169 352 ISNITA-GNSRQIDHVIQ 368 (440)
Q Consensus 352 L~nl~~-~~~~~~~~~i~ 368 (440)
++.++. .+++..-..++
T Consensus 267 ~~~~~~~~g~~~li~~id 284 (435)
T PF03378_consen 267 LSLFAIKYGPDFLIQTID 284 (435)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHH
Confidence 555543 34444444444
No 398
>KOG1924|consensus
Probab=36.33 E-value=5.7e+02 Score=27.40 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=63.2
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHH-------HcC---CHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVI-------QAG---GLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~-------~~g---~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+-.|+..|.-..+.+...+++.++.+|.-..+ ..+.++ +.. -+..|+..|.+.+..-...||..+.|-.
T Consensus 236 lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~~~e~~~l~vacmq~INal 315 (1102)
T KOG1924|consen 236 LLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLDFLEKQQLQVACMQFINAL 315 (1102)
T ss_pred HHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHhccchHHHHHHHHHHHHHh
Confidence 44455555555566777777777777653221 111121 111 2445566666665444556777777766
Q ss_pred cCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 357 AGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 357 ~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
..++...+.-+ .++.-+-.+|.-+.|.++... +.++...+.++.+..
T Consensus 316 ~t~p~dldfRl------hlR~E~mr~gL~~~l~~l~~i-~n~~ldvqlkvfdE~ 362 (1102)
T KOG1924|consen 316 VTSPSDLDFRL------HLRSEFMRDGLHKYLPDLTEI-NNDILDVQLKVFDEH 362 (1102)
T ss_pred cCCHHHhhHHH------HHHHHHHHHhHHHHHHHhhhh-ccHHHHHHHHHHhhh
Confidence 66665544433 234555567777777777666 444455555555443
No 399
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=36.29 E-value=2.6e+02 Score=23.42 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=52.2
Q ss_pred CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
+.+...+..+....+..+...++.++.+..... .........++|.+..+|.+..+.-+..++..+..+...-..
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~--~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE--KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC--cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443345778888877777555443 355666678999999999999999999999988887754433
No 400
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.18 E-value=2.5e+02 Score=23.34 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHH-HhcCCC--hhHHHHHHHHHHHHh
Q psy9169 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK-LLSSSR--VNIVKEAAWTISNIT 356 (440)
Q Consensus 280 ~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~-ll~~~~--~~i~~~a~~~L~nl~ 356 (440)
..+++..+.+.|.+.+.++++.+...+++++..+...-....+.=++ =++..++. ++.++. ..-|..+.-++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 44566677888998888777889999999999998543222221111 13444444 666544 356667888899998
Q ss_pred cCCh
Q psy9169 357 AGNS 360 (440)
Q Consensus 357 ~~~~ 360 (440)
..+.
T Consensus 146 ~~p~ 149 (168)
T PF12783_consen 146 KDPQ 149 (168)
T ss_pred hChh
Confidence 7553
No 401
>KOG2022|consensus
Probab=33.73 E-value=6.5e+02 Score=27.35 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC----CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHH
Q psy9169 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248 (440)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 248 (440)
....+.++..+-.++.+-... ....++.+.+.... ..++.+.+.+...++.++..-.. +.......+|.
T Consensus 481 ~~~tEaci~~~~sva~~~~~t-----~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e--~P~~ln~sl~~ 553 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGET-----ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE--HPMYLNPSLPL 553 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcc-----hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc--CCcccCchHHH
Confidence 455677778877777432211 11236666666542 22578899999998888865322 22346778899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcC
Q psy9169 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATG 316 (440)
Q Consensus 249 L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~ 316 (440)
|++-|+.. +.-..+...+..+|..-.+...... .+++...-..+... .+..+...++++|.+...
T Consensus 554 L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~-d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 554 LFQGLHNS--KESEQAISTLKTLCETCPESLDPYA-DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred HHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHH-HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 99888643 3344445557777754443322211 23344444444332 356788889999988753
No 402
>KOG4524|consensus
Probab=33.70 E-value=1.2e+02 Score=32.92 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=66.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
.++..-..+|.+++..+|-.++.+|.-...-=..+.+.++ .+..-|.++..+...+ +-++..|+.++.+++......
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhhhH
Confidence 5666778888889888998888887654411111122222 3456788888887766 888999999999999876554
Q ss_pred CCHHHHhhHHHHHHHhhc
Q psy9169 237 PDFEKIKICLPLLNQLIH 254 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~ 254 (440)
..-.....++|.+-.++.
T Consensus 882 v~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455788888876654
No 403
>KOG1848|consensus
Probab=33.22 E-value=5.3e+02 Score=29.63 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC----CC--CcHHHHHHHHHHHHhhhhCCCCCCCHHHH
Q psy9169 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PN--TPTTFLRNIVWAISNLCRNKNPAPDFEKI 242 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~----~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 242 (440)
..+..+++...+.++.++....- ..++ +| -+.+.++++ .+ ....+.+.+..+|.-++.+-=+..++...
T Consensus 852 s~~~~evr~~sl~~l~silet~g---e~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVG---EHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccc---hhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 34556777777788877773311 1111 12 333333333 22 13577888888888888776566777778
Q ss_pred hhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHH-----HHHhh
Q psy9169 243 KICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRT-----VGNIA 314 (440)
Q Consensus 243 ~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~-----L~nl~ 314 (440)
.+++..+...-. ..|..+--.|+..++.+++.-....+..-+.+.-...++-+.+ +...+..+++|+ |.++|
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 888888877764 4666676666666666654222111111122222223333332 233455566664 33333
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSR 341 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~ 341 (440)
..+ . .-+..|+++.|.+++.+..
T Consensus 1007 ~ds---r-~eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1007 EDS---R-AEVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred ccc---h-HHHhhhHHHHHHHHHhhhc
Confidence 322 1 2344688888888887653
No 404
>KOG1992|consensus
Probab=33.18 E-value=6.5e+02 Score=27.16 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=79.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHH-------HHHHhcc----CCChHHHHHHHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP-------ICVELLD----DENPNTQFEATWALT 142 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~-------~Lv~lL~----~~~~~i~~~a~~~L~ 142 (440)
..+|.++..|+++..-+.-.|+.++.+++.-..+.+...+....+.| -|++.++ .+++-+.....+++.
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 35788899999999999999999999998765532222222223332 1222221 123333333333333
Q ss_pred HHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH
Q psy9169 143 NIASGTSEQTMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT 217 (440)
Q Consensus 143 nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~ 217 (440)
-.-..--.....+ -.+..+.+...-++++ ..+.+..+-++...|..++..- .-++...+|.+..++..+- .+
T Consensus 578 i~~~~i~p~~~~~-l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eDI-~E 654 (960)
T KOG1992|consen 578 ILQSAIIPHAPEL-LRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSEDI-QE 654 (960)
T ss_pred hCHHhhhhhhhHH-HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHH-HH
Confidence 2211000000000 0122233333334443 3344544445555554444331 2234456777777776655 67
Q ss_pred HHHHHHHHHHhhhhCC
Q psy9169 218 FLRNIVWAISNLCRNK 233 (440)
Q Consensus 218 ~~~~a~~~L~~l~~~~ 233 (440)
+.-.+...++.+....
T Consensus 655 fiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 655 FIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888777655
No 405
>KOG2199|consensus
Probab=33.01 E-value=2.2e+02 Score=27.51 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
.++..+.+=|...++.|.-+|+..+..+..++ ..+|..+....+...|..++.+.....+......++.+.+..-...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 45677778888888999999999998888554 34667777888888899999865557777777666666665432334
Q ss_pred CHHHHhhHHHHHH
Q psy9169 238 DFEKIKICLPLLN 250 (440)
Q Consensus 238 ~~~~~~~~~~~L~ 250 (440)
.+..+..+...|.
T Consensus 125 ~lsLi~~l~~klk 137 (462)
T KOG2199|consen 125 SLSLISALYKKLK 137 (462)
T ss_pred chhHHHHHHHHHH
Confidence 4444444433333
No 406
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.43 E-value=8.8e+02 Score=28.45 Aligned_cols=150 Identities=8% Similarity=0.051 Sum_probs=86.0
Q ss_pred CCHHHHHHhc----cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169 117 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 117 g~i~~Lv~lL----~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
+.++.++.+. .+.++.++.-+......+...... .....++..|+..+.+++..-...|+.+|..|+...+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 5566655543 788888888777777777654322 22345678888888776655557899999999965433
Q ss_pred hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHH----HHHHHHH
Q psy9169 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL----SDICWAL 268 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~----~~a~~~L 268 (440)
. ..--...+..+++.+.+=+ ..-.+.+...|+.++... .........++.-.+-+.|.+.+.... ..++..+
T Consensus 507 ~--l~~fa~~l~giLD~l~~Ls-~~qiR~lf~il~~La~~~-~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 507 E--LQPFATFLKGILDYLDNLS-LQQIRKLFDILCTLAFSD-SSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp H--HHHTHHHHHGGGGGGGG---HHHHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCC-cccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 2 1112234445555555433 555677788888888654 222222334555556677888776553 4455555
Q ss_pred HHhccC
Q psy9169 269 SYISDG 274 (440)
Q Consensus 269 ~~l~~~ 274 (440)
..|+..
T Consensus 583 ~~la~~ 588 (1426)
T PF14631_consen 583 KHLAAK 588 (1426)
T ss_dssp HHTT--
T ss_pred HHHHHH
Confidence 666543
No 407
>KOG2140|consensus
Probab=31.84 E-value=4.3e+02 Score=26.83 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChh
Q psy9169 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN 343 (440)
Q Consensus 289 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~ 343 (440)
-.+.+-....+......+..+|+.|.... .+..++ +++.|.-+|..+..+
T Consensus 241 lqf~r~f~RnDk~~c~~~~kfiahLinq~--VahEIv---~Leil~lLLe~PTdd 290 (739)
T KOG2140|consen 241 LQFKRSFRRNDKVSCLNASKFIAHLINQQ--VAHEIV---ALEILTLLLERPTDD 290 (739)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHhcCCCCc
Confidence 33444445567778888889988886422 222232 567778888776443
No 408
>KOG4337|consensus
Probab=31.38 E-value=6.3e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=23.6
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhh
Q psy9169 243 KICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 243 ~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
.+++|.|+..+.. ...+-...+...|...+..+.+.
T Consensus 358 ~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~ 394 (896)
T KOG4337|consen 358 DEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNN 394 (896)
T ss_pred hhHHHHHHHHhccccchhhHHHHHHHHhccccccchh
Confidence 5788888888865 23445556666666666666544
No 409
>KOG2038|consensus
Probab=30.83 E-value=6.9e+02 Score=26.75 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF 164 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L 164 (440)
..=+.++..++..+..+++..+.. +..++..||.-|.+++..+-..|...|.+|...+|..+-.+ +.-+
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEq------E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv-----i~EI 383 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQ------ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV-----IDEI 383 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHH------HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-----HHHH
Confidence 334678888899998888765522 22456677777877778888888888888877777654333 4455
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHhh
Q psy9169 165 LQLLSSPH--LNLAEQATWALGNIA 187 (440)
Q Consensus 165 ~~lL~~~~--~~v~~~a~~~L~nl~ 187 (440)
..++-.++ ......|+-+|..+.
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhH
Confidence 56666555 233345555555554
No 410
>KOG2374|consensus
Probab=30.32 E-value=2.4e+02 Score=28.09 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=69.3
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 289 PRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 289 ~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
..|+.-| .+..+.+--.-+..|-.+|..+++... ..+..|+.++.+....++.-+..++-.+.-.++.....++
T Consensus 9 ~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii 83 (661)
T KOG2374|consen 9 IGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----LSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLII 83 (661)
T ss_pred HHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344433 445556666677888899988887755 3467899999999999999999999888877766665555
Q ss_pred hcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhh
Q psy9169 368 QEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMA 410 (440)
Q Consensus 368 ~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~ 410 (440)
+ .+..+|+=.=|......|=-.+ -..++.+|..++++|
T Consensus 84 ~-----n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~W 123 (661)
T KOG2374|consen 84 E-----NLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKW 123 (661)
T ss_pred h-----CHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 4 2222332222222222221111 234566666666665
No 411
>KOG2085|consensus
Probab=30.29 E-value=5.3e+02 Score=25.25 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=50.7
Q ss_pred HHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q psy9169 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIA 187 (440)
Q Consensus 110 ~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~ 187 (440)
....++...+-.|+.+..+++|.-|...-.+|.+|...-..++.. +..++=..+.+++.... ..-....+.+||.+.
T Consensus 170 aK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~f-irk~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPF-IRKSINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHH-HHHhhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 456677788999999999999999999889999998644444333 33445555566665433 122233455666655
No 412
>KOG2085|consensus
Probab=30.03 E-value=5.4e+02 Score=25.23 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=32.9
Q ss_pred CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q psy9169 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189 (440)
Q Consensus 148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~ 189 (440)
++......++...+-.|+.++.+.++.-|+..--+|-+|.+.
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygK 207 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGK 207 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999988888777777776653
No 413
>KOG2011|consensus
Probab=29.41 E-value=3.6e+02 Score=29.97 Aligned_cols=135 Identities=10% Similarity=-0.050 Sum_probs=81.8
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHH
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQ 205 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~i~~ 205 (440)
++-.|+||..++..|+-....-| ..+++...+..+-+.|.+.+..||..++.+|-.|....... .-..+...+=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 46788999999888888775434 46778888999999999999999999999999998652211 111112223344
Q ss_pred HHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169 206 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 270 (440)
Q Consensus 206 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~ 270 (440)
++.+.....+..++...+..+..+.... .....-+-.+..++.+.++.+..++...+..
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~g------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSSG------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhccc------ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 5555532333444444333332222111 0112234445667777777777776665543
No 414
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=28.13 E-value=5.3e+02 Score=24.58 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC--CcHHHHHHHHHHHHhhhhCC
Q psy9169 181 WALGNIAGDGARARDLLLGLGTMPQILALVQPN--TPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 181 ~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~ 233 (440)
.+|.+++.-++.-...++++|.+..++.++.-+ ++..+.+.....+..+..+.
T Consensus 4 ~~ll~~a~LG~~E~a~lL~~gfL~k~L~II~aD~~~s~~l~~~y~~~~r~~~k~R 58 (337)
T PF12030_consen 4 GLLLSFAELGPHETAVLLEHGFLLKCLEIIWADTNDSKRLKRMYQNYIRLIEKGR 58 (337)
T ss_pred HHHHHHHHcCHHHHHHHhcCcHHHHHHHHHhcccccchhHHHHHHHHHHHHhcCC
Confidence 345556655555556777888888888877632 23456665555555555443
No 415
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.78 E-value=3.8e+02 Score=22.73 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=66.7
Q ss_pred hcCChHHHHHhccCCChhHHHHHHHHHHHhh-cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 284 DTGVVPRLVELLDSEETTILTAALRTVGNIA-TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 284 ~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~-~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
+.|.=+-|.+++.+.+..-...|..+...|. .-..+....+++. +++.+.+.|.++.. -..-+|+|.--++-. ..
T Consensus 40 ~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~~-L~~~~~~~L~~p~~--~d~~~W~LAl~~a~~-~~ 115 (174)
T PF04510_consen 40 QEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFMEN-LLPEISKVLLPPEE--VDVEDWVLALTGAVC-MA 115 (174)
T ss_pred CCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHHH-HHHHHHHHcCCchh--ccHHHHHHHHHHHHH-HH
Confidence 3444455555554432333356777777776 4455667777775 88888888877643 334455554433210 00
Q ss_pred HHHHhhcC-cchHHHHHHHHcCcHHHHHHHhcCCcH-HHHHHHHHHHHhhCC
Q psy9169 363 IDHVIQEG-ELNQMALLVEESGGLEKLEALQHHENE-TVYQKCYKIISMAFN 412 (440)
Q Consensus 363 ~~~~i~~~-~~~~~~~~l~~~g~l~~l~~L~~~~~~-~v~~~a~~il~~~~~ 412 (440)
|+ +++.+ ..+....++.. .++-+.++...+.+ +...+|..=+++++.
T Consensus 116 Iq-l~e~~~~~~~vk~L~~~--mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 116 IQ-LLESSMRVDLVKELLPK--MVKSVKELVERGMEVGFLRRGLRDFESFVS 164 (174)
T ss_pred HH-HhccccHHHHHHHHHHH--HHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 11 11100 01122222222 35667778888887 888888888877764
No 416
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.20 E-value=3.2e+02 Score=24.15 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC-cHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhC
Q psy9169 78 EMIEGMKSSNPKMRMIATRSARKMLSKERHP-PIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIAS 146 (440)
Q Consensus 78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~-~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~ 146 (440)
.+++.|.|.|..++-.|+..++..++..... .-..+. .+-..|.-.+ .++.|.+|.+.+.-|+.+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5788999999999999999999999866532 122222 2444555555 78888999888888777764
No 417
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=27.12 E-value=26 Score=31.12 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhHHHHhhcc
Q psy9169 27 KRCEMNVELRKAHKDDQLFKRRN 49 (440)
Q Consensus 27 ~R~~~~~~lRk~kr~~~l~krR~ 49 (440)
-|+.+..++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 46667889999999999988886
No 418
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=26.69 E-value=1.3e+02 Score=17.31 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=10.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHHH
Q psy9169 8 IDRKASFKNAGKSFDEMRRKRCEM 31 (440)
Q Consensus 8 ~~r~~~~k~~~~~~~~~r~~R~~~ 31 (440)
|.|+.+.| +.+||+|+..
T Consensus 3 EqkL~sek------eqLrrr~eqL 20 (32)
T PF02344_consen 3 EQKLISEK------EQLRRRREQL 20 (32)
T ss_dssp HHHHHHHH------HHHHHHHHHH
T ss_pred hHHHHHHH------HHHHHHHHHH
Confidence 44555444 6677766543
No 419
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=26.45 E-value=4e+02 Score=22.54 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
.+++..|..+++.+......... ...++..+..-|.+ +.+|+.-++..+..++...+.....-+ ..+++++-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~L-d~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRL-DSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCC-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHh
Confidence 68999999999998876433332 45667888888877 889999999999999987774432222 25666666666
Q ss_pred cCC------------ChhHHHHHHHHHHHh
Q psy9169 296 DSE------------ETTILTAALRTVGNI 313 (440)
Q Consensus 296 ~~~------------~~~v~~~al~~L~nl 313 (440)
... ..+....+++++..+
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 321 123455566666555
No 420
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=24.62 E-value=8.3e+02 Score=25.61 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=61.4
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC--CCC-cHHH-HHHHHHHHHhhhhCCC
Q psy9169 161 IPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--PNT-PTTF-LRNIVWAISNLCRNKN 234 (440)
Q Consensus 161 i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~--~~~-~~~~-~~~a~~~L~~l~~~~~ 234 (440)
+..+...+.... ..-....+|++|.|++.-.+.-+.-+--.++..|+.+.. .+. +..+ ..+..+.++ ..+.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG---QYpR 559 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG---QYPR 559 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec---cchH
Confidence 455666665544 344567899999999643332122122235666666543 221 1111 111111111 1100
Q ss_pred -CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 235 -PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 235 -~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
-.........++..|.++++...+.++.-||..+..++..-+
T Consensus 560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~ 602 (1053)
T COG5101 560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCP 602 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCc
Confidence 001122345667778888888889999999999998886544
No 421
>KOG0889|consensus
Probab=24.62 E-value=1e+03 Score=30.65 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=92.3
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cC--ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LG--TMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.+.+..++.-|.+++..|++.+..+|.+++.........+.. .. .+|....-+.... -..+.-.+.++.......
T Consensus 1125 ~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p-~~~qig~vd~~~fC~~l~ 1203 (3550)
T KOG0889|consen 1125 MNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALP-FTIQIGHLDAITFCLSLG 1203 (3550)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCC-HHHHhhhHHHHHHHHHcC
Confidence 367888888899999999999999999998554221122111 00 1111111111111 122222222222222222
Q ss_pred CCCCCHHHH----hhHHHHHH-----------HhhcCC----CHHHHHHHHHHHHHhccCChhhH--HHHHhcCChHHHH
Q psy9169 234 NPAPDFEKI----KICLPLLN-----------QLIHTT----DVETLSDICWALSYISDGHNDKI--QAVVDTGVVPRLV 292 (440)
Q Consensus 234 ~~~~~~~~~----~~~~~~L~-----------~ll~~~----d~~i~~~a~~~L~~l~~~~~~~~--~~l~~~g~~~~Lv 292 (440)
+...++... ......+. +..... -...+..+..+++......+... ..-...+++..++
T Consensus 1204 p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1204 PCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred CcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 122221111 11111111 111111 11235666666665554443221 1223346788888
Q ss_pred HhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC
Q psy9169 293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 340 (440)
Q Consensus 293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~ 340 (440)
+.|....+++...+..++......+...-...+..+.-|.|..+-++.
T Consensus 1284 k~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~ 1331 (3550)
T KOG0889|consen 1284 KSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHN 1331 (3550)
T ss_pred HHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhh
Confidence 888888889998888888888777555445555555556666655544
No 422
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=23.88 E-value=5.9e+02 Score=23.64 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=13.9
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 384 GLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 384 ~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
|--.+..++...++.+++.-...|..++
T Consensus 279 Gn~Viq~~l~~~~~~~~~~i~~~l~~~~ 306 (322)
T cd07920 279 GNYVIQTALDVAKEEQRELLVEAIRPHL 306 (322)
T ss_pred ccHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554443
No 423
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.77 E-value=3.5e+02 Score=21.00 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=44.7
Q ss_pred ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
++|.+...+......+.+..+...++.|+..-. -.......++..+......... ...++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 477888888856558899999999999997642 2223333444444433333332 477888888888543
No 424
>PLN03205 ATR interacting protein; Provisional
Probab=23.71 E-value=3.5e+02 Score=26.31 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=68.5
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CChhhHHHHHhcCChHH---HHHh-ccCCChhHHHHHHHHHHHhh
Q psy9169 242 IKICLPLLNQLIHTTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPR---LVEL-LDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 242 ~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~---Lv~l-L~~~~~~v~~~al~~L~nl~ 314 (440)
...++.+|+.+..-++..+...+++.|..+.. ++..+...-.+.+++.. +.+. ..+....|+..|+.++--|+
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 44566667777666666677777666655442 22222233333343332 2222 13456678888998887777
Q ss_pred cCChHH--HHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHh
Q psy9169 315 TGNDHQ--TDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNIT 356 (440)
Q Consensus 315 ~~~~~~--~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~ 356 (440)
..++.+ ++.+...-+++.+.++|+... ..++++|...|.-+.
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 655443 344555567888888888654 578999877665554
No 425
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=23.63 E-value=2.4e+02 Score=19.02 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=35.5
Q ss_pred HHHHHHHHcCcHHHHHHHhc-CCcHHHHHHHHHHHHhhCCCCcccc
Q psy9169 374 QMALLVEESGGLEKLEALQH-HENETVYQKCYKIISMAFNDSAENS 418 (440)
Q Consensus 374 ~~~~~l~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~~~~ 418 (440)
.-+..+.+.|+-..|..+-. ..+++|......++.-+..+|++++
T Consensus 10 ~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 10 EGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 34778889998888887644 5589999999999999988776543
No 426
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.68 E-value=1.1e+02 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 386 EKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 386 ~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
+.+..|+.+++++|++.|.++|-.|
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
No 427
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.31 E-value=6.5e+02 Score=23.56 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-----CcHHHHHHHHHHHHhhhhCCCCCCCHHHHh
Q psy9169 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-----TPTTFLRNIVWAISNLCRNKNPAPDFEKIK 243 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 243 (440)
...+..++..|+.+|.+=++- +..+|.++..+..+ .+.+.+.......+.|..++.-. --....
T Consensus 208 dEs~~~~r~aAl~sLr~dsGl----------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF-vdPY~h 276 (450)
T COG5095 208 DESDEQTRDAALESLRNDSGL----------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF-VDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHhccCccH----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee-ecHHHH
Confidence 344466666666666543221 12456666555421 23445555555666666665221 223567
Q ss_pred hHHHHHHHhh-----cCCC-----HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-ccCCC-hhHHHHHHHHHH
Q psy9169 244 ICLPLLNQLI-----HTTD-----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEE-TTILTAALRTVG 311 (440)
Q Consensus 244 ~~~~~L~~ll-----~~~d-----~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l-L~~~~-~~v~~~al~~L~ 311 (440)
.++|.++.++ .+.+ ..++.-|+..+.+.+..-+..... +...+...+.+. |.... ...+.-|+..++
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt-LkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT-LKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh-hchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 7888887776 1221 236777777887777654433221 222233333332 22222 234555666555
Q ss_pred Hh
Q psy9169 312 NI 313 (440)
Q Consensus 312 nl 313 (440)
-+
T Consensus 356 ~l 357 (450)
T COG5095 356 IL 357 (450)
T ss_pred hh
Confidence 44
No 428
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.19 E-value=4.3e+02 Score=21.44 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=51.0
Q ss_pred CHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHH-HHhhhCCC--CcHHHHHHHHHHHHhhhhCC
Q psy9169 160 AIPKFLQLLS-SPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQ-ILALVQPN--TPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 160 ~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~-L~~ll~~~--~~~~~~~~a~~~L~~l~~~~ 233 (440)
++..|.+-|. +.++.++..|+..|-.+..+. ..+...+...+++.. |+.++... .+..+...++..+...+..-
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455555555 356778888888887777554 456677778889987 89998632 23577888877777766543
No 429
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.78 E-value=2.2e+02 Score=18.00 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=18.9
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChHHHH
Q psy9169 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTD 322 (440)
Q Consensus 290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~ 322 (440)
.++++|.++++..+...+.+|+.+..-+++..+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 456677766666677777777777766665544
No 430
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=21.51 E-value=4e+02 Score=28.83 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
...|...||.+..|.. ++.|+.+|.+.+..+...|+-+|++..
T Consensus 83 ~~~a~~~l~~m~gg~~-----------~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 83 PEKAIELLGTMQGGYN-----------VHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred HHHHHHHHhhccCCCC-----------HHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 3455556665544432 455666666666666666666666543
No 431
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.35 E-value=4.9e+02 Score=21.74 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=44.4
Q ss_pred CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169 117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (440)
|-+...++.+ ..+++.+....+.++.+....+.-..+.+ ...+|.+..+|.+..+.-...++.+|..+.
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c--~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~ 97 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC--VDLLPLIEELLQSKYESYISVALEMLRSIL 97 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3444455555 44667777777777775544322222222 256899999999998887778888777766
No 432
>KOG2256|consensus
Probab=21.33 E-value=9.5e+02 Score=25.11 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCC-----CcHHHHHHHHHHHHhhhhCCCCCC----C
Q psy9169 169 SSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPN-----TPTTFLRNIVWAISNLCRNKNPAP----D 238 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~----~ 238 (440)
...+..++..|.-+|.++|.. .+.+-+.++ -...+..+.++ .......-.-+++.+|+.-+ +.. .
T Consensus 292 stge~~~rv~Afl~l~~l~~~~~~~~l~~vl----k~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld-~~~~Yq~a 366 (661)
T KOG2256|consen 292 STGEESLRVLAFLCLIDLCRKFKSTCLDPVL----KTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD-LQVSYQHA 366 (661)
T ss_pred ccCCcchhhHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC-HHHHHHHH
Confidence 345677888888888888843 233323333 22333333332 22334444556666666543 221 1
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHH------------HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-------cCC-
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETL------------SDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-------DSE- 298 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~------------~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-------~~~- 298 (440)
+..+.++.-.|-..+.....+-. .--+.+|+. +.+.....+.+ +.+|+++. -.+
T Consensus 367 F~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf-~~~~~s~lq~L-----vYpLvQvi~GvirLipT~q 440 (661)
T KOG2256|consen 367 FVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISF-ANGSASQLQPL-----VYPLVQVILGVIRLIPTPQ 440 (661)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHhhhhhh-----hhHHHHHHHHHhhhcCccc
Confidence 22233333334333433222111 111222222 22232222322 33333332 222
Q ss_pred ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc
Q psy9169 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 338 (440)
-..++..+++.|-+|+.++..++- +.+.|..++.
T Consensus 441 y~PLRlhcir~Li~Ls~ssg~fIP------i~~ll~Eml~ 474 (661)
T KOG2256|consen 441 YYPLRLHCIRSLISLSRSSGTFIP------LSPLLVEMLK 474 (661)
T ss_pred chhHHHHHHHHHHHHHhhcCceee------cHHHHHHHHH
Confidence 347899999999999886654332 4455666654
No 433
>KOG4231|consensus
Probab=20.69 E-value=1.1e+02 Score=30.54 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=43.6
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~ 187 (440)
...+++++.+|..++++++......+..+-+...-..++.++-.+.+++-+.+..++..+.
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 6789999999999999999875544433334445566777777777777666666665554
No 434
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.29 E-value=48 Score=24.75 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=25.2
Q ss_pred chhhHHHHHhhccCCCChHHHHHHHHHHHHHHHH
Q psy9169 4 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 37 (440)
Q Consensus 4 ~~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk 37 (440)
+..+..|-.-|++---|+-|.||+|-+.+...++
T Consensus 64 ~l~dgDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 64 ELHDGDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred cccCCCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 3445577778887667999999999887665544
No 435
>PRK13266 Thf1-like protein; Reviewed
Probab=20.16 E-value=6.2e+02 Score=22.52 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=53.6
Q ss_pred HhcCCCCCcHHHHHHhCCHHHHHHhccC-CChHHHHHHHHHHHHHhCCCcHHHHH-------HHhcCCHHHHHHhhCCCC
Q psy9169 101 MLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMT-------VINANAIPKFLQLLSSPH 172 (440)
Q Consensus 101 lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~~~i~~~a~~~L~nla~~~~~~~~~-------i~~~g~i~~L~~lL~~~~ 172 (440)
+++.+.+-..+.+..-|++..+=.++.. ..++-+.....+|++-...+++..+. ........-+...+....
T Consensus 39 Ll~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~ 118 (225)
T PRK13266 39 LLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKA 118 (225)
T ss_pred HHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence 4555554446777788999998888844 34455666667788777776654432 223334445555554322
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q psy9169 173 LNLAEQATWALGNIAGDGARARDLLLGLG 201 (440)
Q Consensus 173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g 201 (440)
..-.......+..++.+....-..++.-|
T Consensus 119 ~~~~~~l~~~l~~ia~~~~f~YSRl~AIG 147 (225)
T PRK13266 119 LGEPGGLLATLLAIANNSKFKYSRLFAIG 147 (225)
T ss_pred cccchhHHHHHHHHhcCCCCchHHHHHHH
Confidence 11111133445555544333333344333
Done!