Query psy9169
Match_columns 440
No_of_seqs 360 out of 2435
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 20:38:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.3E-71 4.3E-76 563.2 41.0 434 3-440 6-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 7.7E-59 2.6E-63 467.2 41.1 410 27-440 13-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 4.4E-56 1.5E-60 450.3 41.6 408 7-419 11-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 6.3E-54 2.1E-58 434.6 34.1 413 1-417 8-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 4.5E-39 1.5E-43 318.8 37.8 344 75-418 21-449 (450)
6 1xm9_A Plakophilin 1; armadill 100.0 5.9E-38 2E-42 310.6 29.5 323 74-415 2-452 (457)
7 3now_A UNC-45 protein, SD10334 100.0 9.3E-37 3.2E-41 313.8 25.2 322 76-414 379-739 (810)
8 3now_A UNC-45 protein, SD10334 100.0 7.3E-36 2.5E-40 307.2 28.7 325 73-412 420-782 (810)
9 3nmz_A APC variant protein; pr 100.0 2.1E-35 7E-40 288.4 29.0 327 73-415 69-453 (458)
10 3nmz_A APC variant protein; pr 100.0 2.8E-35 9.6E-40 287.4 23.9 320 74-413 32-409 (458)
11 3ul1_B Importin subunit alpha- 100.0 1.6E-34 5.5E-39 290.2 26.0 283 74-358 100-388 (510)
12 3tpo_A Importin subunit alpha- 100.0 3E-34 1E-38 289.8 28.0 284 73-358 118-407 (529)
13 3l6x_A Catenin delta-1; cateni 100.0 8.2E-34 2.8E-38 283.0 28.5 339 73-429 47-496 (584)
14 3nmw_A APC variant protein; AR 100.0 3.3E-34 1.1E-38 272.0 18.2 274 87-362 45-339 (354)
15 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-30 4.1E-35 263.6 35.7 280 74-359 101-387 (529)
16 4b8j_A Importin subunit alpha- 100.0 2.4E-31 8.1E-36 268.9 28.7 283 73-358 116-401 (528)
17 2jdq_A Importin alpha-1 subuni 100.0 3.9E-31 1.3E-35 261.7 27.8 286 74-362 64-353 (450)
18 2z6h_A Catenin beta-1, beta-ca 100.0 4.5E-30 1.6E-34 265.5 36.9 280 74-359 98-384 (644)
19 3nmw_A APC variant protein; AR 100.0 3.5E-31 1.2E-35 251.3 24.7 271 131-416 46-338 (354)
20 1xm9_A Plakophilin 1; armadill 100.0 1.3E-31 4.5E-36 265.1 22.6 280 74-359 44-451 (457)
21 1wa5_B Importin alpha subunit; 100.0 7.7E-31 2.6E-35 265.3 27.9 284 73-358 129-413 (530)
22 4hxt_A De novo protein OR329; 100.0 2.6E-30 8.9E-35 235.3 25.4 242 117-359 2-243 (252)
23 4db8_A Armadillo-repeat protei 100.0 4.7E-30 1.6E-34 234.0 21.2 240 117-357 12-251 (252)
24 3l6x_A Catenin delta-1; cateni 100.0 1.8E-29 6.1E-34 251.8 25.2 290 115-415 46-387 (584)
25 1jdh_A Beta-catenin; beta-cate 100.0 8.5E-29 2.9E-33 250.1 28.3 325 74-414 59-387 (529)
26 2z6g_A B-catenin; FULL-length, 100.0 6E-28 2.1E-32 253.7 35.7 333 74-413 234-623 (780)
27 4db8_A Armadillo-repeat protei 100.0 1.9E-29 6.4E-34 230.0 19.5 241 73-315 11-251 (252)
28 4hxt_A De novo protein OR329; 100.0 2.2E-28 7.5E-33 222.6 24.3 242 75-318 3-244 (252)
29 2z6h_A Catenin beta-1, beta-ca 100.0 7.3E-28 2.5E-32 248.9 29.2 326 74-415 56-385 (644)
30 1xqr_A HSPBP1 protein; armadil 100.0 2.4E-27 8.3E-32 219.1 25.7 236 131-416 54-291 (296)
31 2z6g_A B-catenin; FULL-length, 100.0 2.8E-27 9.5E-32 248.7 27.0 325 74-414 192-520 (780)
32 4db6_A Armadillo repeat protei 99.9 5.5E-25 1.9E-29 194.7 21.2 201 114-315 9-209 (210)
33 4db6_A Armadillo repeat protei 99.9 5.4E-25 1.9E-29 194.7 20.6 200 157-357 10-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 2.5E-24 8.6E-29 217.6 20.3 324 75-413 335-729 (778)
35 1xqr_A HSPBP1 protein; armadil 99.9 3.9E-22 1.3E-26 184.2 20.4 199 76-277 30-242 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 2E-22 6.7E-27 178.4 15.8 197 118-316 9-230 (233)
37 3tt9_A Plakophilin-2; cell adh 99.9 3.2E-22 1.1E-26 177.0 13.7 200 72-274 6-230 (233)
38 3opb_A SWI5-dependent HO expre 99.9 7.1E-21 2.4E-25 192.5 20.2 280 74-357 376-728 (778)
39 3grl_A General vesicular trans 99.7 2.4E-15 8.3E-20 148.5 26.9 331 73-417 20-399 (651)
40 1oyz_A Hypothetical protein YI 99.7 3.3E-15 1.1E-19 137.8 25.1 255 74-409 23-279 (280)
41 3grl_A General vesicular trans 99.7 5.3E-15 1.8E-19 146.1 23.2 294 74-367 60-404 (651)
42 1oyz_A Hypothetical protein YI 99.6 1.8E-14 6E-19 132.9 21.8 202 113-356 19-220 (280)
43 4fdd_A Transportin-1; heat rep 99.6 1.9E-15 6.4E-20 161.1 16.2 316 74-412 128-471 (852)
44 4fdd_A Transportin-1; heat rep 99.6 3.4E-15 1.2E-19 159.1 14.5 273 75-358 175-472 (852)
45 1b3u_A Protein (protein phosph 99.6 1.2E-13 4.2E-18 140.6 23.9 305 75-411 282-586 (588)
46 1b3u_A Protein (protein phosph 99.6 1.5E-13 5.3E-18 139.9 22.8 305 75-412 243-548 (588)
47 3ltm_A Alpha-REP4; protein eng 99.6 1.5E-13 5E-18 121.1 18.6 188 116-359 18-205 (211)
48 2vgl_B AP-2 complex subunit be 99.6 9.3E-14 3.2E-18 141.7 19.8 322 74-414 86-459 (591)
49 3ltj_A Alpharep-4; protein eng 99.6 1.6E-13 5.5E-18 119.8 17.5 184 117-356 14-197 (201)
50 1ibr_B P95, importin beta-1 su 99.5 3E-13 1E-17 133.5 19.3 278 74-358 128-438 (462)
51 3ltm_A Alpha-REP4; protein eng 99.5 4.7E-13 1.6E-17 117.8 18.2 188 74-318 19-206 (211)
52 3ltj_A Alpharep-4; protein eng 99.5 1.8E-12 6.2E-17 113.1 20.7 184 74-314 14-197 (201)
53 2vgl_B AP-2 complex subunit be 99.5 4.1E-12 1.4E-16 129.5 23.5 256 74-357 13-268 (591)
54 1qgr_A Protein (importin beta 99.5 1.8E-11 6.2E-16 130.6 26.9 317 74-412 128-479 (876)
55 2bpt_A Importin beta-1 subunit 99.4 4.1E-12 1.4E-16 135.3 16.0 277 76-359 371-670 (861)
56 2bpt_A Importin beta-1 subunit 99.4 1.1E-11 3.8E-16 132.0 19.3 275 76-358 181-483 (861)
57 1ibr_B P95, importin beta-1 su 99.4 4.8E-12 1.6E-16 124.8 14.6 310 77-413 93-438 (462)
58 1w63_A Adapter-related protein 99.4 7E-11 2.4E-15 120.9 23.2 291 73-413 69-380 (618)
59 1w63_A Adapter-related protein 99.4 3.2E-11 1.1E-15 123.4 20.2 254 74-358 107-380 (618)
60 1qgr_A Protein (importin beta 99.3 3.3E-11 1.1E-15 128.6 18.4 276 76-358 174-480 (876)
61 4gmo_A Putative uncharacterize 99.3 2.3E-11 7.8E-16 125.8 16.2 215 117-356 35-257 (684)
62 1u6g_C TIP120 protein, CAND1; 99.2 2.3E-10 7.7E-15 126.7 14.7 274 75-359 7-286 (1230)
63 2vgl_A Adaptor protein complex 99.1 3.2E-08 1.1E-12 101.0 26.0 293 73-411 73-397 (621)
64 4ady_A RPN2, 26S proteasome re 99.1 1.5E-08 5.2E-13 105.1 22.2 272 74-415 392-679 (963)
65 1u6g_C TIP120 protein, CAND1; 99.0 1.5E-09 5E-14 120.2 15.1 328 75-412 87-463 (1230)
66 4gmo_A Putative uncharacterize 99.0 4.7E-10 1.6E-14 115.9 9.9 212 75-314 35-257 (684)
67 3tjz_B Coatomer subunit gamma; 99.0 1.4E-08 4.7E-13 95.1 18.7 276 75-407 69-348 (355)
68 2vgl_A Adaptor protein complex 99.0 5.4E-08 1.9E-12 99.3 23.7 267 74-368 111-407 (621)
69 2db0_A 253AA long hypothetical 99.0 5.3E-07 1.8E-11 73.9 22.7 188 155-362 28-215 (253)
70 2db0_A 253AA long hypothetical 98.9 1.8E-06 6.2E-11 70.8 24.2 216 115-357 30-246 (253)
71 3b2a_A TON_1937, putative unch 98.9 2.5E-07 8.7E-12 79.1 18.2 224 159-410 33-259 (265)
72 4ady_A RPN2, 26S proteasome re 98.8 3.8E-07 1.3E-11 94.7 22.8 240 75-361 430-680 (963)
73 2qk2_A LP04448P; mini spindles 98.8 1.2E-07 4E-12 84.9 14.4 187 77-274 18-206 (242)
74 3tjz_B Coatomer subunit gamma; 98.7 1.3E-07 4.4E-12 88.5 13.7 245 74-354 104-350 (355)
75 2qk2_A LP04448P; mini spindles 98.7 4.9E-08 1.7E-12 87.4 10.1 187 161-357 17-205 (242)
76 3b2a_A TON_1937, putative unch 98.7 7.6E-07 2.6E-11 76.2 14.8 186 75-274 34-219 (265)
77 2qk1_A Protein STU2; STU2P, XM 98.6 2.1E-07 7.1E-12 83.6 12.1 191 122-315 21-220 (249)
78 2qk1_A Protein STU2; STU2P, XM 98.6 7.3E-07 2.5E-11 80.0 15.1 195 163-357 20-220 (249)
79 1te4_A Conserved protein MTH18 98.6 7.8E-09 2.7E-13 83.2 0.8 121 116-271 11-131 (131)
80 1ho8_A Vacuolar ATP synthase s 98.6 2.7E-06 9.3E-11 81.4 18.1 268 84-357 135-476 (480)
81 1te4_A Conserved protein MTH18 98.6 1.3E-08 4.6E-13 81.8 1.4 122 157-313 10-131 (131)
82 1ho8_A Vacuolar ATP synthase s 98.5 2.9E-06 1E-10 81.2 15.6 233 79-315 172-476 (480)
83 2iw3_A Elongation factor 3A; a 98.3 0.00017 5.7E-09 76.1 23.9 297 76-411 16-323 (986)
84 3dad_A FH1/FH2 domain-containi 98.0 0.00018 6.1E-09 65.6 15.9 157 75-233 119-288 (339)
85 3dad_A FH1/FH2 domain-containi 97.9 0.00033 1.1E-08 63.9 16.2 185 208-401 125-325 (339)
86 2iw3_A Elongation factor 3A; a 97.9 0.0032 1.1E-07 66.4 25.2 260 75-355 55-322 (986)
87 4ffb_C Protein STU2; tubulin f 97.7 0.0016 5.6E-08 59.0 17.1 191 76-274 12-213 (278)
88 2x1g_F Cadmus; transport prote 97.7 0.0026 9E-08 68.4 21.0 262 86-364 256-579 (971)
89 1wa5_C Importin alpha RE-expor 97.6 0.0013 4.5E-08 70.7 17.5 255 89-356 376-669 (960)
90 2x19_B Importin-13; nuclear tr 97.5 0.0044 1.5E-07 66.6 19.0 266 76-359 243-558 (963)
91 4hat_C Exportin-1; heat repeat 97.4 0.063 2.2E-06 57.7 27.1 296 85-412 206-569 (1023)
92 4ffb_C Protein STU2; tubulin f 97.4 0.0074 2.5E-07 54.6 16.8 186 122-315 14-212 (278)
93 2x1g_F Cadmus; transport prote 97.4 0.0057 2E-07 65.8 18.5 219 129-357 476-722 (971)
94 3ibv_A Exportin-T; karyopherin 97.3 0.0074 2.5E-07 64.6 17.9 304 84-412 203-566 (980)
95 1wa5_C Importin alpha RE-expor 97.3 0.013 4.5E-07 62.8 19.9 221 85-314 416-669 (960)
96 1upk_A MO25 protein; transfera 97.3 0.005 1.7E-07 56.0 13.6 202 153-358 72-284 (341)
97 3c2g_A SYS-1 protein; beta-cat 97.2 0.044 1.5E-06 49.9 19.0 296 98-411 266-617 (619)
98 3m1i_C Exportin-1; heat repeat 97.2 0.17 5.8E-06 54.8 27.7 298 85-412 206-569 (1049)
99 2x19_B Importin-13; nuclear tr 97.2 0.019 6.6E-07 61.5 20.1 218 127-357 459-714 (963)
100 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0023 7.9E-08 62.0 10.5 243 75-352 175-431 (800)
101 2of3_A ZYG-9; multifunctional 97.1 0.012 4.2E-07 52.3 14.6 179 163-358 50-237 (266)
102 2of3_A ZYG-9; multifunctional 97.1 0.02 6.8E-07 51.0 15.6 178 123-315 52-236 (266)
103 1upk_A MO25 protein; transfera 97.1 0.13 4.3E-06 47.0 20.5 202 195-410 72-281 (341)
104 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0064 2.2E-07 59.0 11.3 244 118-408 175-432 (800)
105 3m1i_C Exportin-1; heat repeat 96.8 0.081 2.8E-06 57.3 20.7 152 161-317 453-620 (1049)
106 2fv2_A RCD1 required for cell 96.8 0.077 2.6E-06 46.3 15.8 196 76-277 5-228 (268)
107 4hat_C Exportin-1; heat repeat 96.7 0.0046 1.6E-07 66.4 10.1 143 171-318 465-621 (1023)
108 1lrv_A LRV, leucine-rich repea 96.7 0.00066 2.3E-08 60.0 2.6 44 289-351 197-240 (244)
109 3gjx_A Exportin-1; transport, 96.5 0.33 1.1E-05 52.2 22.5 220 75-316 29-276 (1073)
110 3ibv_A Exportin-T; karyopherin 96.5 0.44 1.5E-05 51.0 22.9 212 86-317 20-262 (980)
111 2f31_A Diaphanous protein homo 96.3 0.11 3.9E-06 45.3 14.4 142 257-404 67-220 (233)
112 1lrv_A LRV, leucine-rich repea 96.0 0.008 2.7E-07 53.1 5.6 21 385-406 220-240 (244)
113 3gjx_A Exportin-1; transport, 96.0 2.2 7.4E-05 45.9 27.6 292 85-411 218-594 (1073)
114 3a6p_A Exportin-5; exportin-5, 95.8 1.8 6.2E-05 47.4 24.4 258 76-356 13-330 (1204)
115 3ebb_A Phospholipase A2-activa 95.8 0.69 2.3E-05 42.0 17.7 187 119-309 105-299 (304)
116 3l9t_A Putative uncharacterize 95.8 0.38 1.3E-05 41.6 14.7 144 119-284 73-218 (240)
117 3eg5_B Protein diaphanous homo 95.8 0.59 2E-05 44.1 17.7 140 257-402 133-284 (383)
118 3c2g_A SYS-1 protein; beta-cat 95.6 0.072 2.5E-06 48.5 9.8 129 226-356 266-402 (619)
119 2fv2_A RCD1 required for cell 95.6 0.32 1.1E-05 42.4 13.6 97 261-358 73-175 (268)
120 3eg5_B Protein diaphanous homo 95.5 0.99 3.4E-05 42.5 18.3 157 76-233 68-248 (383)
121 2f31_A Diaphanous protein homo 95.4 1.1 3.6E-05 39.1 17.0 154 79-233 5-182 (233)
122 3ebb_A Phospholipase A2-activa 95.4 0.24 8.2E-06 45.1 12.9 146 205-353 151-301 (304)
123 3l9t_A Putative uncharacterize 95.3 0.28 9.6E-06 42.4 12.4 138 207-368 77-218 (240)
124 2bnx_A Diaphanous protein homo 95.2 1.3 4.5E-05 41.7 18.0 140 257-402 71-222 (386)
125 2p8q_B Snurportin-1; heat repe 94.7 0.023 7.9E-07 33.7 2.6 39 9-49 2-40 (40)
126 1lsh_A Lipovitellin (LV-1N, LV 94.1 2.9 9.9E-05 45.1 19.5 170 203-398 393-581 (1056)
127 2bnx_A Diaphanous protein homo 94.0 4 0.00014 38.4 18.1 156 77-233 7-186 (386)
128 3gs3_A Symplekin, LD45768P; he 94.0 3.1 0.0001 36.6 22.3 90 88-187 29-118 (257)
129 3u0r_A Apoptosis inhibitor 5; 93.8 0.36 1.2E-05 46.2 10.1 122 171-313 40-161 (507)
130 3o2t_A Symplekin; heat repeat, 93.7 4.6 0.00016 37.8 17.9 89 89-187 40-128 (386)
131 1lsh_A Lipovitellin (LV-1N, LV 93.2 3 0.0001 45.0 17.7 168 119-320 393-581 (1056)
132 3qml_C Protein SLS1, nucleotid 91.8 1.8 6.3E-05 38.7 11.3 137 257-412 41-189 (315)
133 3u0r_A Apoptosis inhibitor 5; 91.5 10 0.00035 36.3 23.5 254 76-358 31-299 (507)
134 3fga_B Serine/threonine-protei 91.3 9.7 0.00033 35.7 19.6 248 149-415 119-369 (403)
135 3fga_B Serine/threonine-protei 88.7 12 0.0004 35.2 14.5 223 76-318 131-369 (403)
136 2npp_B PP2A, B subunit, serine 88.5 18 0.0006 34.6 16.6 225 76-320 164-404 (449)
137 3a6p_A Exportin-5; exportin-5, 87.1 9.7 0.00033 41.7 15.1 210 129-358 25-277 (1204)
138 2npp_B PP2A, B subunit, serine 86.8 22 0.00076 33.9 16.9 243 149-415 152-402 (449)
139 3gs3_A Symplekin, LD45768P; he 84.7 20 0.00068 31.4 17.4 138 259-411 30-172 (257)
140 3o2t_A Symplekin; heat repeat, 81.7 34 0.0012 31.9 16.4 137 260-411 41-182 (386)
141 3ut4_A CTHE_2751, putative unc 79.4 20 0.00068 27.8 11.4 95 287-413 32-131 (134)
142 1x5b_A Signal transducing adap 77.8 3.6 0.00012 33.4 5.4 73 73-145 51-124 (163)
143 1vdy_A Hypothetical protein (R 77.6 9.8 0.00033 29.8 7.6 95 305-416 30-134 (140)
144 2jak_A Serine/threonine-protei 76.8 40 0.0014 31.4 12.8 105 150-255 165-269 (392)
145 3qml_C Protein SLS1, nucleotid 76.0 15 0.00052 32.9 9.2 134 217-356 43-188 (315)
146 1mhq_A ADP-ribosylation factor 75.2 4.9 0.00017 32.0 5.5 73 73-145 37-115 (148)
147 3ldz_A STAM-1, signal transduc 75.1 2.9 9.9E-05 33.0 4.1 73 73-145 41-113 (140)
148 1x5b_A Signal transducing adap 74.7 13 0.00046 29.9 8.1 94 254-356 29-124 (163)
149 2xpp_A IWS1, ECU08_0440; trans 74.1 19 0.00065 28.4 8.5 75 319-410 52-134 (145)
150 1vsy_5 Proteasome activator BL 74.0 9 0.00031 40.9 8.6 187 160-357 134-365 (997)
151 3g2s_A C-terminal fragment of 72.9 5.9 0.0002 31.5 5.4 75 72-146 46-126 (149)
152 3ldz_A STAM-1, signal transduc 71.0 14 0.00046 29.0 7.1 95 254-357 19-114 (140)
153 3gjx_B Snurportin-1; transport 70.3 0.47 1.6E-05 43.2 -1.9 44 6-51 28-71 (365)
154 3zyq_A Hepatocyte growth facto 69.4 4.3 0.00015 34.9 4.2 74 72-145 43-117 (226)
155 1mhq_A ADP-ribosylation factor 68.2 20 0.0007 28.3 7.6 94 255-357 16-116 (148)
156 3nfq_A Transcription factor IW 68.1 33 0.0011 27.7 8.8 77 318-411 66-150 (170)
157 1juq_A ADP-ribosylation factor 67.3 20 0.00067 29.2 7.5 94 255-357 28-128 (171)
158 1juq_A ADP-ribosylation factor 65.7 7.3 0.00025 31.8 4.6 74 73-146 49-128 (171)
159 1dvp_A HRS, hepatocyte growth 60.9 7.6 0.00026 33.2 4.1 74 72-145 40-114 (220)
160 3pst_A Protein DOA1; protein d 60.4 19 0.00064 34.0 6.9 106 83-193 271-394 (425)
161 1vsy_5 Proteasome activator BL 60.0 5.4 0.00018 42.6 3.5 147 202-358 761-925 (997)
162 3g2s_A C-terminal fragment of 59.7 37 0.0013 26.8 7.6 70 288-357 50-126 (149)
163 3gae_A Protein DOA1; UFD3, CDC 56.5 7 0.00024 34.3 3.1 104 83-190 99-219 (253)
164 3zyq_A Hepatocyte growth facto 54.4 20 0.00067 30.8 5.6 74 159-232 45-119 (226)
165 1dvp_A HRS, hepatocyte growth 54.4 18 0.00063 30.7 5.4 72 160-231 43-115 (220)
166 2b6c_A Hypothetical protein EF 54.2 66 0.0022 27.2 8.9 104 248-366 93-197 (220)
167 2b6c_A Hypothetical protein EF 54.1 99 0.0034 26.0 11.8 139 122-284 60-199 (220)
168 3l3f_X Protein DOA1, DOA1/UFD3 53.8 20 0.0007 33.0 5.8 105 83-192 208-330 (362)
169 2jak_A Serine/threonine-protei 52.6 50 0.0017 30.8 8.3 73 114-187 171-244 (392)
170 2xpp_A IWS1, ECU08_0440; trans 51.6 61 0.0021 25.5 7.5 75 278-356 53-135 (145)
171 3gae_A Protein DOA1; UFD3, CDC 48.5 90 0.0031 27.1 9.0 107 170-276 101-220 (253)
172 3jxy_A Alkylpurine DNA glycosy 47.4 1.2E+02 0.004 25.8 9.5 74 287-367 132-205 (232)
173 3pst_A Protein DOA1; protein d 46.9 68 0.0023 30.2 8.3 133 134-277 243-393 (425)
174 1elk_A Target of MYB1; superhe 46.2 29 0.00098 27.7 5.0 73 73-145 52-129 (157)
175 4atg_A TAF6; transcription, TF 44.4 1.1E+02 0.0037 25.4 8.3 129 201-338 40-178 (196)
176 1elk_A Target of MYB1; superhe 42.4 1E+02 0.0035 24.4 7.7 95 254-357 30-130 (157)
177 3vld_A DNA mismatch repair pro 41.2 2.5E+02 0.0085 26.9 12.9 143 76-232 75-226 (500)
178 3nfq_A Transcription factor IW 41.2 1.2E+02 0.0039 24.6 7.7 76 278-357 68-151 (170)
179 3l3f_X Protein DOA1, DOA1/UFD3 39.4 72 0.0025 29.4 7.1 132 134-276 180-329 (362)
180 1t06_A Hypothetical protein; s 36.5 86 0.0029 26.8 6.9 76 288-368 110-191 (235)
181 3jxy_A Alkylpurine DNA glycosy 34.1 2.1E+02 0.0073 24.1 12.0 139 122-285 66-207 (232)
182 1sz9_A PCF11 protein; RNA poly 27.8 2E+02 0.0067 22.4 7.0 69 288-356 45-113 (144)
183 1wjt_A Transcription elongatio 24.2 62 0.0021 23.7 3.2 38 376-413 47-85 (103)
184 1a92_A Delta antigen; leucine 23.6 73 0.0025 19.4 2.8 19 23-41 11-29 (50)
185 1vsy_4 Proteasome activator BL 22.3 6.3E+02 0.022 26.0 11.4 113 160-273 340-455 (799)
186 4atg_A TAF6; transcription, TF 21.9 1.6E+02 0.0055 24.3 5.7 108 243-356 39-161 (196)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.3e-71 Score=563.16 Aligned_cols=434 Identities=46% Similarity=0.781 Sum_probs=333.1
Q ss_pred cchhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccc--cccchhhhccccCCCCCCcccCCHHHHH
Q psy9169 3 QKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQ--LDEIEEENVTVIEPTCMSPIKMTVPEMI 80 (440)
Q Consensus 3 ~~~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~lv 80 (440)
.++.|++|+++|||+|+|++|+||||+++.++|||+||+|+|+|||++.. ++..++..+. ..++......++.++
T Consensus 6 ~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lv 82 (529)
T 3tpo_A 6 NANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQEN---RNNQGTVNWSVEDIV 82 (529)
T ss_dssp --------------------------------------CCSCSCCCCCC------------------CGGGSSCCHHHHH
T ss_pred CCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhc---cchhhhHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999854 2222333221 112333457899999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Q psy9169 81 EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINAN 159 (440)
Q Consensus 81 ~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g 159 (440)
+.++|+|++.|+.|+..++++++.+.+++++.+++.|++|.|+++| .++++.+|.+|+|+|+||+.++++++..+++.|
T Consensus 83 ~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G 162 (529)
T 3tpo_A 83 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 162 (529)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999999999999998889999999999999999999 677799999999999999999999999999999
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC----cHHHHHHHHHHHHhhhhCCCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNP 235 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~ 235 (440)
++|.|+.+|.+++..++++|+|+|+||+.+++.+|+.+...|++++|+.++...+ ...+++.++|++++++.+..+
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 242 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 242 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999998654 246789999999999999878
Q ss_pred CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
........+++|.|+.++.+++++++.++||+|++++.+..+..+.+++.|+++.|+.+|.+++..++.+|+++|+||+.
T Consensus 243 ~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 88888889999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh---------------------------
Q psy9169 316 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--------------------------- 368 (440)
Q Consensus 316 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~--------------------------- 368 (440)
+++..+..+++.|+++.|..++.++++.++++|+|+|+||+++++.+++.+++
T Consensus 323 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 402 (529)
T 3tpo_A 323 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAIT 402 (529)
T ss_dssp SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887776
Q ss_pred ---------------------------------------------------cCcchHHHHHHHHcCcHHHHHHHhcCCcH
Q psy9169 369 ---------------------------------------------------EGELNQMALLVEESGGLEKLEALQHHENE 397 (440)
Q Consensus 369 ---------------------------------------------------~~~~~~~~~~l~~~g~l~~l~~L~~~~~~ 397 (440)
.+..+.++.+++++||+++|+.|++|+|.
T Consensus 403 nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~ 482 (529)
T 3tpo_A 403 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE 482 (529)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSH
T ss_pred HHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCH
Confidence 23356778899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccccc-----cCCCccccCCCCCCCCCCCCC
Q psy9169 398 TVYQKCYKIISMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 440 (440)
Q Consensus 398 ~v~~~a~~il~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 440 (440)
+||++|..||++||+++++||. .++++|+|+.++. ++|+|||
T Consensus 483 ~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~f 529 (529)
T 3tpo_A 483 SVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF 529 (529)
T ss_dssp HHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCC-CCCCCCC
Confidence 9999999999999998777665 4567899998766 6799999
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7.7e-59 Score=467.16 Aligned_cols=410 Identities=44% Similarity=0.737 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q psy9169 27 KRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKER 106 (440)
Q Consensus 27 ~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~ 106 (440)
.|....+++|+++++.+..++++...++....... ..+++...+..++.+|+.++|+|++.|+.|+..+|+++|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~ 89 (510)
T 3ul1_B 13 PRGSGMLETAAALFERNHMDSPDLGTDDDDLAMAD---IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREK 89 (510)
T ss_dssp -------------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCcccHHHHHHHHHhhccCCccccCCccccchhh---hccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Confidence 35667788999998887777776654322211111 012244567889999999999999999999999999999999
Q ss_pred CCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169 107 HPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185 (440)
Q Consensus 107 ~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n 185 (440)
+|+++.+++.|++|.|+++| .++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+|
T Consensus 90 ~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~n 169 (510)
T 3ul1_B 90 QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN 169 (510)
T ss_dssp CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999 56779999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHhhhCCCC----cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHH
Q psy9169 186 IAGDGARARDLLLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL 261 (440)
Q Consensus 186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~ 261 (440)
|+.+++.+|+.+...|++++|+.++...+ ...+++.++|++++++++..+........+++|.|+.++.+.+++++
T Consensus 170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999998654 24678999999999999987888888889999999999999999999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169 262 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 341 (440)
Q Consensus 262 ~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~ 341 (440)
..++|+|++|+....+..+.+.+.|+++.|+.+|.+++..++.+|+++|+|++.+++..+..+++.|+++.|..++.+++
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~ 329 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHhh-----------------------------------------------------
Q psy9169 342 VNIVKEAAWTISNITAGNSRQIDHVIQ----------------------------------------------------- 368 (440)
Q Consensus 342 ~~i~~~a~~~L~nl~~~~~~~~~~~i~----------------------------------------------------- 368 (440)
+.++++|+|+|+||++++.++++.+++
T Consensus 330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~L 409 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999988887776
Q ss_pred -------------------------cCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCccccc----
Q psy9169 369 -------------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI---- 419 (440)
Q Consensus 369 -------------------------~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~---- 419 (440)
.+..+.++.+++++||+++|+.|+.|+|++||++|.+||++||++++|||.
T Consensus 410 L~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~ 489 (510)
T 3ul1_B 410 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489 (510)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-----------
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCC
Confidence 234567888999999999999999999999999999999999998877665
Q ss_pred -cCCCccccCCCCCCCCCCCCC
Q psy9169 420 -ENGDTIEFNPQPVNTVNGFNF 440 (440)
Q Consensus 420 -~~~~~~~~~~~~~~~~~~~~~ 440 (440)
.++++|+|+.++. ++++|||
T Consensus 490 ~~~~~~~~~~~~~~-~~~~~~~ 510 (510)
T 3ul1_B 490 ETTSEGFAFQVQDG-APGTFNF 510 (510)
T ss_dssp ----------------------
T ss_pred CCCccccccCCCCC-CCCCCCC
Confidence 4557899998776 7789999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.4e-56 Score=450.26 Aligned_cols=408 Identities=45% Similarity=0.754 Sum_probs=322.8
Q ss_pred hHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhcCC
Q psy9169 7 AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSS 86 (440)
Q Consensus 7 ~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~ 86 (440)
++.|+++||+ ++|.+|+||||+++.++|||+||+|++.|||++.......++.... +. .......++.|++.|.++
T Consensus 11 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~--~~-~~~~~~~l~~lv~~L~s~ 86 (528)
T 4b8j_A 11 VEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAA--TG-VDKKLESLPAMIGGVYSD 86 (528)
T ss_dssp -----------------CCCCC-----------------CCCC-------------------------CHHHHHHHHTSS
T ss_pred hHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccc--cc-hhhhHHHHHHHHHHHcCC
Confidence 4789999998 5899999999999999999999999999999985321111000000 00 112346799999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC-hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 165 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~ 165 (440)
++..+..|++.|+++++...++++..+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 99999999999999998776678899999999999999997665 99999999999999999899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169 166 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245 (440)
Q Consensus 166 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 245 (440)
.+|.++++.+++.|+|+|+||+.+++..+..+...|+++.|+.++..+.+..+++.++|+|++|+.+. +........++
T Consensus 167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~ 245 (528)
T 4b8j_A 167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPA 245 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence 99999999999999999999999989999999999999999999976666999999999999999987 66677778999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 325 (440)
Q Consensus 246 ~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~ 325 (440)
+|.|+.++.+.++.++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.++
T Consensus 246 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHhh------------------------------------
Q psy9169 326 QAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------ 368 (440)
Q Consensus 326 ~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~------------------------------------ 368 (440)
+.|+++.|+.+|.++ ++.++++|+|+|+||+.+++++++.+++
T Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 326 DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 999999999999998 8999999999999999988888777665
Q ss_pred --------------------------------------cC---------cchHHHHHHHHcCcHHHHHHHhcCCcHHHHH
Q psy9169 369 --------------------------------------EG---------ELNQMALLVEESGGLEKLEALQHHENETVYQ 401 (440)
Q Consensus 369 --------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~ 401 (440)
.+ ..+.++..++++||+++|+.|++|++++|++
T Consensus 406 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~ 485 (528)
T 4b8j_A 406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYE 485 (528)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHH
Confidence 00 1224788999999999999999999999999
Q ss_pred HHHHHHHhhCCCCccccc
Q psy9169 402 KCYKIISMAFNDSAENSI 419 (440)
Q Consensus 402 ~a~~il~~~~~~~~~~~~ 419 (440)
+|..++++||..+++++.
T Consensus 486 ~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 486 KAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHHHHHCC-------
T ss_pred HHHHHHHHHCCCcccccc
Confidence 999999999998777654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.3e-54 Score=434.58 Aligned_cols=413 Identities=47% Similarity=0.738 Sum_probs=348.8
Q ss_pred CCcchhhHHHHHhhccCC-CChHHHHHHHHHHHHHHHHhhhhHHHHhhcccccc----ccchhhh----ccccCCCCCCc
Q psy9169 1 MSQKVAAIDRKASFKNAG-KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL----DEIEEEN----VTVIEPTCMSP 71 (440)
Q Consensus 1 ~~~~~~~~~r~~~~k~~~-~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~----~~~~~~~----~~~~~~~~~~~ 71 (440)
|++...++.|++.||++| +|++|+||||++++++|||+||++++.|||++... +..++.+ ... .....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 84 (530)
T 1wa5_B 8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQ---QFYSQ 84 (530)
T ss_dssp ----CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------
T ss_pred CCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhh---hhhhh
Confidence 566778899999999999 99999999999999999999999999999998531 1111111 000 00102
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC-ChHHHHHHHHHHHHHhCCCcH
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-NPNTQFEATWALTNIASGTSE 150 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~i~~~a~~~L~nla~~~~~ 150 (440)
....++.++..|+++++..+..|++.|+++++...++++..+++.|++|.|+.+|.++ ++.++..|+|+|++++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4467999999999999999999999999998876557788999999999999999775 899999999999999999889
Q ss_pred HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 151 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
.+..+++.|+++.|+.+|.++++.+++.|+|+|++|+.+++..++.+...|+++.|+.++.+.+ ..++..++|+|++|+
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998899999999999999999998854 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
.+.++........+++|.|+.++.+.++.++..++|+|++|+...++..+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 88756667777899999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------- 368 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------------- 368 (440)
+|++.+++...+.+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++++++.+++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877776654
Q ss_pred ---------cC------------------------------------------------------cchHHHHHHHHcCcH
Q psy9169 369 ---------EG------------------------------------------------------ELNQMALLVEESGGL 385 (440)
Q Consensus 369 ---------~~------------------------------------------------------~~~~~~~~l~~~g~l 385 (440)
.+ ..+.++..+.++||+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 00 013466779999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169 386 EKLEALQHHENETVYQKCYKIISMAFNDSAEN 417 (440)
Q Consensus 386 ~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 417 (440)
++|+.|+.|++++|+++|..+|++||.++++|
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999999987665
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.5e-39 Score=318.76 Aligned_cols=344 Identities=50% Similarity=0.800 Sum_probs=307.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh-CCHHHHHHhccCC-ChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~i~~Lv~lL~~~-~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.++.+++.|+++++.++..|+..|+++++...+++...+++. |++|.|+++|.++ ++.++..|+++|++++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 489999999999999999999999999875555667888888 9999999999766 89999999999999999888888
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+++.|++|.|+.+|.++++.+++.|+|+|++++.+++..++.+...|+++.|+.++.++.+..+++.++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999998889999999999999999999755689999999999999987
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
..+........+++|.|+.++.+.++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 64444444458999999999999999999999999999999888788888999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh------------------------
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------ 368 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~------------------------ 368 (440)
++.+.+...+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+++++++.+++
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999988877766654
Q ss_pred --------------------------------------------------cC---------cchHHHHHHHHcCcHHHHH
Q psy9169 369 --------------------------------------------------EG---------ELNQMALLVEESGGLEKLE 389 (440)
Q Consensus 369 --------------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~ 389 (440)
.+ ..+.|+..+.+.||+++|.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 420 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE 420 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHH
Confidence 00 0135678899999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHhhCCCCcccc
Q psy9169 390 ALQHHENETVYQKCYKIISMAFNDSAENS 418 (440)
Q Consensus 390 ~L~~~~~~~v~~~a~~il~~~~~~~~~~~ 418 (440)
.|++|++.+|+++|..+|++||.+++|++
T Consensus 421 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 421 FLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999998877654
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.9e-38 Score=310.64 Aligned_cols=323 Identities=17% Similarity=0.217 Sum_probs=270.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..+|.++..|.++++++|..|++.|++++..++ +....+++.|++|.|+.+|.++++.++..|+|+|.||+.++++++.
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 468999999999999999999999999864332 3355899999999999999999999999999999999998899999
Q ss_pred HHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC--------CC-------CcHH
Q psy9169 154 TVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PN-------TPTT 217 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~--------~~-------~~~~ 217 (440)
.+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..|..+.. |++|.|+.++. ++ .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88899999999999999998 778888888 99999999993 22 2467
Q ss_pred HHHHHHHHHHhhhhCCCCCCCHHHHh-hHHHHHHHhhcC-----------------------------------------
Q psy9169 218 FLRNIVWAISNLCRNKNPAPDFEKIK-ICLPLLNQLIHT----------------------------------------- 255 (440)
Q Consensus 218 ~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~----------------------------------------- 255 (440)
++++++|+|+|||.++ ......... +++|.|+.++.+
T Consensus 159 v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 8889999999999762 222222222 666666655532
Q ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhccCChh
Q psy9169 256 ----------------------------------------------------------TDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 256 ----------------------------------------------------------~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
.++.++..++|+|++|+.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 2356777789999999987643
Q ss_pred h---H-HHHH-hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCCh------hHHH
Q psy9169 278 K---I-QAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV------NIVK 346 (440)
Q Consensus 278 ~---~-~~l~-~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~------~i~~ 346 (440)
. + +.++ +.|++|.|+++|.+++..++..|+++|+|++.+. ....++..|+++.|+++|.++++ .+..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 2 3344 6899999999999999999999999999998753 34456677899999999998643 5888
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCc
Q psy9169 347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~ 415 (440)
.++++|.|+..+++++ +..+.++||+++|..|+.|+ ++++|++|..+|.+||.+.+
T Consensus 396 ~~l~~l~ni~~~~~~~-------------~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQPQL-------------AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHH-------------HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcCHHH-------------HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999999877654 67778899999999999999 99999999999999998665
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.3e-37 Score=313.84 Aligned_cols=322 Identities=14% Similarity=0.129 Sum_probs=276.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---
Q psy9169 76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTS--- 149 (440)
Q Consensus 76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~--- 149 (440)
++.++++|.++ |++++..|++.|..+ +... .....++ +.|++|.|+++|+++++.+++.|+|+|+||+.+++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayL-S~~~-~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYL-TLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTSH-HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCCc-HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 66788888887 899999999999977 4443 3344555 57999999999988899999999999999998652
Q ss_pred --------------------------HHH---HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q psy9169 150 --------------------------EQT---MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200 (440)
Q Consensus 150 --------------------------~~~---~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (440)
..+ +.+++.|++|.|+.+|.++++.++++|+|+|+||+.+ +.+|..+++.
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQE 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHC
Confidence 122 6889999999999999999999999999999999986 6699999999
Q ss_pred CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH--HHHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChh
Q psy9169 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIHTT-DVETLSDICWALSYISDGHND 277 (440)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~ 277 (440)
|++|+|+.++.+++ ...++.|+|+|.+|+.+.++...+ ....+++|.|+.+|.++ +......|+|+|.||+..+++
T Consensus 536 Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 536 GGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp THHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 99999999998877 788999999999999876432211 12356899999999865 344557899999999999888
Q ss_pred hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
..+.+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +++ .|.++.|+.++.+++..++++|+|+|+||+
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999998775555 444 799999999999999999999999999999
Q ss_pred cCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 357 AGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 357 ~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
++++.+++.+++ ..|+++.|..|+.+++.++++.|.++|.++....
T Consensus 694 ~~s~~~~~~ii~------------~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 694 SVSVKCCEKILA------------IASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHCHHHHHHHHT------------STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHH------------HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 988776544432 3799999999999999999999999999987643
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-36 Score=307.22 Aligned_cols=325 Identities=14% Similarity=0.088 Sum_probs=278.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----------------------------c---HHHHHHhCCHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP----------------------------P---IDELIEAGVVPI 121 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~----------------------------~---~~~ii~~g~i~~ 121 (440)
...+|.|+++|.++++.+++.|+++|.|+....... . ++.+++.|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 357899999999999999999999999998643211 0 268889999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHH-HHHh
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARD-LLLG 199 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~-~i~~ 199 (440)
|+.+|.++++.+|.+|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +...- ....
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999995 5789999999999999999999999999999999999999542 32100 0012
Q ss_pred cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhH
Q psy9169 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 279 (440)
Q Consensus 200 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~ 279 (440)
.|++++|+.+|.++.+...+..++|+|.||+.+.+.........+++|.|+.++.+.++.++..|+++|+||+.+++..
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~- 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI- 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence 4699999999986654555678999999999886333444555789999999999999999999999999999877655
Q ss_pred HHHHh-cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 280 QAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 280 ~~l~~-~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
..+++ .|+++.|+.++.+++..++..|+++|+||+.+++.+.+.+++ .|+++.|+.++.+++..+++.|+|+|+|++.
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 44454 799999999999999999999999999999988889999999 8999999999999999999999999999998
Q ss_pred CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC---cHHHHHHHHHHHHhhCC
Q psy9169 358 GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE---NETVYQKCYKIISMAFN 412 (440)
Q Consensus 358 ~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~---~~~v~~~a~~il~~~~~ 412 (440)
+++++ ...+.+.|+++.|..|+..+ +.++++.|.++|+....
T Consensus 738 ~s~e~-------------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 738 AGEEI-------------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TCHHH-------------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCHHH-------------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 77654 67778899999999997544 79999999999988854
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=288.38 Aligned_cols=327 Identities=16% Similarity=0.193 Sum_probs=273.8
Q ss_pred cCCHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCH----------HHHHHhccCCC
Q psy9169 73 KMTVPEMIEGMKSS------------NPKMRMIATRSARKMLSKERHPPIDELIEAGVV----------PICVELLDDEN 130 (440)
Q Consensus 73 ~~~i~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i----------~~Lv~lL~~~~ 130 (440)
...+|.|+++|+.. +++++.+|+|+|.++++..+ .......+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 47899999999963 37999999999999998876 456777777888 77788884331
Q ss_pred --hH-----HHH-------HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q psy9169 131 --PN-----TQF-------EATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGN 185 (440)
Q Consensus 131 --~~-----i~~-------~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~n 185 (440)
.+ ++. +|+|+|+|++.+ +++|..+++.|+++.|+.+|.. .++.+++.|+|+|.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 22 433 999999999765 8999999999999999999942 237799999999999
Q ss_pred hhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhh-cCCCHHHHH
Q psy9169 186 IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLS 262 (440)
Q Consensus 186 l~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll-~~~d~~i~~ 262 (440)
|+.+++..+..+.. .|+||.|+.+|.+++ .+++..++|+|.||+.+.+ .........+++|.|+.+| .+.++.++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 99887777766654 566999999999766 8999999999999997532 2234445579999999975 567889999
Q ss_pred HHHHHHHHhccCChhhHHHHH-hcCChHHHHHhccCCCh----hHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHH
Q psy9169 263 DICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMK 334 (440)
Q Consensus 263 ~a~~~L~~l~~~~~~~~~~l~-~~g~~~~Lv~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~ 334 (440)
.++.+|++|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.||+. +++++++.+++.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 999999999984444444555 78999999999987654 489999999999997 7888999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169 335 KLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 335 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~ 414 (440)
.+|.+++..++++|+|+|+|++.+++++ ...+.+.|+++.|..|+.++++++++.|..+|..+....
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~~~~~~-------------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSARNPKD-------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHSSCHHH-------------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCHHH-------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999888766 556678899999999999999999999999999998755
Q ss_pred c
Q psy9169 415 A 415 (440)
Q Consensus 415 ~ 415 (440)
+
T Consensus 453 p 453 (458)
T 3nmz_A 453 P 453 (458)
T ss_dssp S
T ss_pred H
Confidence 3
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=287.43 Aligned_cols=320 Identities=15% Similarity=0.184 Sum_probs=253.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHhCCHHHHHHhccCC------------ChHHHHHHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPI-DELIEAGVVPICVELLDDE------------NPNTQFEATWA 140 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~ii~~g~i~~Lv~lL~~~------------~~~i~~~a~~~ 140 (440)
..++.|+..+.+.|+.. .++++++...+++. ..++++|++|.|+++|+.. +++++++|+|+
T Consensus 32 ~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp -------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 45788889998888773 33334443334454 8899999999999999542 37999999999
Q ss_pred HHHHhCCCcHHHHHHHhcCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchhHHH
Q psy9169 141 LTNIASGTSEQTMTVINANAI----------PKFLQLLSSPH--LN-----LAE-------QATWALGNIAGDGARARDL 196 (440)
Q Consensus 141 L~nla~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~r~~ 196 (440)
|+||+.++++.+....+.|++ +.+++++.++. .+ +++ +|+|+|+|++.+ +.+|+.
T Consensus 106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~ 184 (458)
T 3nmz_A 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184 (458)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999999999998888888 77788887652 22 555 999999999877 899999
Q ss_pred HHhcCChHHHHhhhCC----------CCcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169 197 LLGLGTMPQILALVQP----------NTPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDIC 265 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~d~~i~~~a~ 265 (440)
+.+.|++++|+.+|.. ..+..+++.++|+|.|||.+++....... ..+++|.|+.+|.+++++++..++
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~ 264 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999942 23467899999999999988643322332 357799999999999999999999
Q ss_pred HHHHHhccC-ChhhHHHHHhcCChHHHHHhc-cCCChhHHHHHHHHHHHhhcCChHHHHHHH-HcCCHHHHHHHhcCCCh
Q psy9169 266 WALSYISDG-HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVI-QAGGLQKMKKLLSSSRV 342 (440)
Q Consensus 266 ~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~l~-~~g~l~~L~~ll~~~~~ 342 (440)
|+|.+|+.. +++....+++.|+++.|+++| .+.+..++..|+.+|+||+.+.++....+. ..|+++.|+.+|.++++
T Consensus 265 ~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 999999985 566778899999999999975 667889999999999999996655555565 79999999999998754
Q ss_pred ----hHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 343 ----NIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 343 ----~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
.+++.|+|+|+||+. +++++ ...+.+.|+++.|..++.+++.++++.|..+|..+...
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~-------------~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDH-------------RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHH-------------HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHH-------------HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 489999999999996 67655 56677899999999999999999999999999998743
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.6e-34 Score=290.23 Aligned_cols=283 Identities=26% Similarity=0.397 Sum_probs=255.7
Q ss_pred CCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..+|.|+++|. ++++.+|..|+|+|.++++.+. .....+++.|++|.|+.+|.+++++++..|+|+|+||+.++++.+
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~-e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 56899999997 5568999999999999987654 557889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
..+++.|+++.|+.+|.+++ ..+...++|+|+|++.+...........+++|.|+.++.+.+ .+++..++|+|+
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~ 257 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAIS 257 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 99999999999999998765 457889999999999876555555566789999999998877 899999999999
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
+|+.+.+.........+++|.|+.++.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.+++..++..|+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 99987644334445578999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 308 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|+|+||+.+++.+.+.+++.|+++.|+.++.+++..++++|+|+|+|++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999863
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3e-34 Score=289.81 Aligned_cols=284 Identities=25% Similarity=0.391 Sum_probs=257.2
Q ss_pred cCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...+|.|+++|. ++++.+|..|+++|.++++... .....+++.|++|.|+.+|.++++.++..|+|+|+||+.++++.
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~-~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 467899999997 5669999999999999987654 45678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 152 TMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
+..+++.|+++.|+.+|..++ ..+...++|+|++++.+...........+++|.|+.++.+.+ .+++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHH
Confidence 999999999999999998754 457889999999999876555555666789999999998877 89999999999
Q ss_pred HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHH
Q psy9169 227 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306 (440)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~a 306 (440)
++++.+.+.........+++|.|+.++.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 99998764444445557899999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 307 l~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+|+|+||+.+++.+...+++.|+++.|+.++.+++..++++|+|+|+|++.+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999863
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.2e-34 Score=282.99 Aligned_cols=339 Identities=17% Similarity=0.222 Sum_probs=270.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC-CcHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~~~ 151 (440)
...++.||++|.++++.+|..|++.|++++.... +.+..+++.|+||.|+.+|.++++.+|..|+|+|.||+.+ ++++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 4689999999999999999999999998875443 5678899999999999999999999999999999999986 6899
Q ss_pred HHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-----------------CC
Q psy9169 152 TMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-----------------PN 213 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-----------------~~ 213 (440)
+..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +..+..+.. ++++.|++++. +.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 5789999999999999985 677777775 57999999871 12
Q ss_pred CcHHHHHHHHHHHHhhhhCCCCCCCHHH----------------------------------------------------
Q psy9169 214 TPTTFLRNIVWAISNLCRNKNPAPDFEK---------------------------------------------------- 241 (440)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~---------------------------------------------------- 241 (440)
.+..++++++|+|.||+...........
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2357777788888777754311000000
Q ss_pred ----------------------HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChh---hHH-HHHhcCChHHHHHh
Q psy9169 242 ----------------------IKICLPLLNQLIH-TTDVETLSDICWALSYISDGHND---KIQ-AVVDTGVVPRLVEL 294 (440)
Q Consensus 242 ----------------------~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~---~~~-~l~~~g~~~~Lv~l 294 (440)
..++++.++.+|. +.++.++..|+|+|.+|+.+... ..+ .+.+.+++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0123455566664 45788889999999999876521 222 44456889999999
Q ss_pred ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--------ChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--------RVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--------~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
|.+++..++..|+++|+||+.+... . .++..|+++.|+.+|.++ ...+...|||+|+||+++++++
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~-~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~---- 437 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN-K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA---- 437 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC-H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH-H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH----
Confidence 9999999999999999999987653 3 355889999999999876 3568899999999999998776
Q ss_pred hhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCCCCccccc---cCCCccccCC
Q psy9169 367 IQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENSI---ENGDTIEFNP 429 (440)
Q Consensus 367 i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~~~~~---~~~~~~~~~~ 429 (440)
...+.+.|++++|..|+.++ .+.+.+.|..+|..+|.+.+--.. +++..-.|..
T Consensus 438 ---------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~ 496 (584)
T 3l6x_A 438 ---------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQV 496 (584)
T ss_dssp ---------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCC
T ss_pred ---------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhcc
Confidence 56677899999999999886 899999999999999986653332 3444445543
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.3e-34 Score=272.01 Aligned_cols=274 Identities=18% Similarity=0.187 Sum_probs=236.7
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-----------CChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-----------~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
+...+..|+++|.++. .+. ..++.+++.|+++.|+.+|.. .++.+|..|+|+|.||+.+++..+..+
T Consensus 45 ~~~~~~~A~~aL~nls-~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLS-FDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHH-TSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHc-CCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455668999999985 443 568899999999999999932 246899999999999999887777777
Q ss_pred Hh-cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 156 IN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 156 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..|..+.+.|+++.|+++|....+.++++.++++|.||+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 54 56699999999999999999999999999974 67788999999999999998654444889999999999999843
Q ss_pred CC-CCCHHHHhhHHHHHHHhhcCCCH----HHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhccCCChhHHHH
Q psy9169 234 NP-APDFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305 (440)
Q Consensus 234 ~~-~~~~~~~~~~~~~L~~ll~~~d~----~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~ 305 (440)
+. ...+....+++|.|+.+|.+.++ +++..++|+|.+|+. ..++..+.+++.|+++.|+.+|.+++..++..
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 22 22222257999999999987654 599999999999997 67778899999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 306 al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
|+++|+|++.+++++++.+++.|+++.|+.++.++++.+++.|+|+|+||+.+.+.+
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999987664
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-30 Score=263.60 Aligned_cols=280 Identities=16% Similarity=0.202 Sum_probs=248.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+++|.++++.++..|+++|.++..... .....+++.|++|.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578999999999999999999999999987654 4467788899999999999888999999999999999999899999
Q ss_pred HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.+.+.|+++.|+.+|++++ ...+..++.+|.+++.. +..+..+...|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcC
Confidence 9999999999999998765 66778899999999975 677889999999999999998875 89999999999999987
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTV 310 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L 310 (440)
.... . ...+++|.|+.++.+.+++++..++|+|++|+..+++....+.+.|+++.|+.+|.+ .++.++..|+++|
T Consensus 258 ~~~~-~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 258 ATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp CTTC-S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Chhh-H--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6332 2 235899999999999999999999999999999888888999999999999999975 3478999999999
Q ss_pred HHhhcCChH---HHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcCC
Q psy9169 311 GNIATGNDH---QTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN 359 (440)
Q Consensus 311 ~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~ 359 (440)
+|++.+++. ....+.+.|+++.|+.++.+++ +.+++.++|+|+|++.++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 999886543 3567889999999999999886 589999999999999764
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.4e-31 Score=268.92 Aligned_cols=283 Identities=27% Similarity=0.421 Sum_probs=255.1
Q ss_pred cCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...++.|+++|.+++ +.++..|+++|.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++|+.+++..
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 367999999999887 9999999999999976543 45678889999999999998899999999999999999988888
Q ss_pred HHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 152 TMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+..+.+.|+++.|+.+| .+++..++..++|+|++++...+.. ......|+++.|+.++.+.+ ..++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSND-EEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999999 5678999999999999999875444 33445899999999998776 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRT 309 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~ 309 (440)
.+.+.........+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77533333445578999999999999999999999999999999888889999999999999999998 89999999999
Q ss_pred HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|+|++.+++.....+++.|+++.|+.++.++++.++++|+|+|+|++.+
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999998999999999999999999999999999999999999975
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.9e-31 Score=261.68 Aligned_cols=286 Identities=27% Similarity=0.361 Sum_probs=253.2
Q ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..++.|++.|.++ ++.++..|++++.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++++..++..+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 4689999999988 89999999999999976543 345677889999999999998999999999999999999988899
Q ss_pred HHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
..+++.|+++.|+.++.+ ++..++..|+|+|++++.+. +..+..+ ..++++.|+.++.+.+ ..++..++|+|.+++
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD-TDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 999999999999999996 67999999999999999765 3332222 3789999999998766 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
...++........+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87533333444568999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHH
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ 362 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~ 362 (440)
+|++.+++...+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ ++++
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 353 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998999999999999999999999999999999999999875 4443
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-30 Score=265.45 Aligned_cols=280 Identities=16% Similarity=0.198 Sum_probs=247.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+++|+++++.++..|+++|.++++... .....+++.|++|.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 568999999999999999999999999987653 4567788899999999999888899998899999999998899999
Q ss_pred HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.+.+.|+++.|+.+|.+.+ ..+++.++.+|.|++.. +..+..++..|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGG
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999866 77889999999999965 778899999999999999998875 89999999999999987
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTV 310 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L 310 (440)
.... ....+++|.|+.++.+.+++++..++|+|++|+..+++..+.+++.|+++.|+.+|.+.+ +.++..|+++|
T Consensus 255 ~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 255 ATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp CTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 6332 223589999999999999999999999999999988888899999999999999997632 68999999999
Q ss_pred HHhhcCChH--H-HHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcCC
Q psy9169 311 GNIATGNDH--Q-TDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN 359 (440)
Q Consensus 311 ~nl~~~~~~--~-~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~ 359 (440)
+||+..+++ . ...+++.|+++.|+.+|.+++ +.++++|+|+|+||+.+.
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 999975442 2 344888999999999999875 699999999999998653
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.5e-31 Score=251.29 Aligned_cols=271 Identities=17% Similarity=0.190 Sum_probs=233.0
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLLLG 199 (440)
Q Consensus 131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~ 199 (440)
...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566899999999976 8999999999999999999952 23789999999999999887777777754
Q ss_pred -cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh
Q psy9169 200 -LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 200 -~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
.|+||.|+.+|.+++ .+++..++|+|.||+.+.+ .........+++|.|+.+| .+.+++++..++++|++|+...+
T Consensus 125 ~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 456999999999766 8999999999999998632 2234445679999999975 66789999999999999998665
Q ss_pred hhHHHHH-hcCChHHHHHhccCCCh----hHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q psy9169 277 DKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 348 (440)
Q Consensus 277 ~~~~~l~-~~g~~~~Lv~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a 348 (440)
+....+. ..|+++.|+.+|.+++. .++..|+++|.||+. +++++++.+++.|+++.|+.+|.+++..++++|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 4445555 78999999999987654 489999999999997 788899999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169 349 AWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 349 ~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~ 416 (440)
+|+|+|++.+++++ ...+.+.|+++.|..|+.++++++++.|..+|..+..+.++
T Consensus 284 ~~aL~nLa~~~~~~-------------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKD-------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHH-------------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHH-------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999887766 55667899999999999999999999999999999886554
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.98 E-value=1.3e-31 Score=265.10 Aligned_cols=280 Identities=20% Similarity=0.224 Sum_probs=239.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.++|.|+++|.++++.+|..|+++|+++...++ +....+++.|++|.|+++|. ++++++++.|+|+|+||+.+ ++.+
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~ 121 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK 121 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH
Confidence 579999999999999999999999999976433 56778889999999999996 88999999999999999988 7788
Q ss_pred HHHHhcCCHHHHHHhhC--------CC--------CHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHhhhCCC--
Q psy9169 153 MTVINANAIPKFLQLLS--------SP--------HLNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPN-- 213 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~--------~~--------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g~i~~L~~ll~~~-- 213 (440)
..+++ |++|.|+.+|. ++ ++.++..|+|+|+||+.+ +..++.+.+. |+++.|+.++.++
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~ 199 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 88888 99999999993 32 356777999999999988 8889999887 9999999777530
Q ss_pred --------------------------------------------------------------------------------
Q psy9169 214 -------------------------------------------------------------------------------- 213 (440)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (440)
T Consensus 200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence
Q ss_pred ----------------CcHHHHHHHHHHHHhhhhCCCCCCC-H---HH-HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 214 ----------------TPTTFLRNIVWAISNLCRNKNPAPD-F---EK-IKICLPLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 214 ----------------~~~~~~~~a~~~L~~l~~~~~~~~~-~---~~-~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
.++.+++.++|+|+||+.+..+... . .. ..+++|.|+.+|.+++.+++..|+|+|.+++
T Consensus 280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 1245566789999999987633211 1 11 2588999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHhccCCCh------hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHH
Q psy9169 273 DGHNDKIQAVVDTGVVPRLVELLDSEET------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIV 345 (440)
Q Consensus 273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~ 345 (440)
.+. ....++..|+++.|+++|.++++ ++...++++|+|++.+++++...+.+.|+++.|..++.++ ++.++
T Consensus 360 ~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 360 RHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp TSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred cCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 854 34566777999999999987643 6888999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhcCC
Q psy9169 346 KEAAWTISNITAGN 359 (440)
Q Consensus 346 ~~a~~~L~nl~~~~ 359 (440)
+.|+|+|.|+..+.
T Consensus 438 ~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 438 EAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHcch
Confidence 99999999998654
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=7.7e-31 Score=265.26 Aligned_cols=284 Identities=27% Similarity=0.371 Sum_probs=254.0
Q ss_pred cCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 73 KMTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 73 ~~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
...++.|+++|.++ ++.++..|+++|.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++++..++..
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 36799999999987 89999999999999976443 34677888999999999998889999999999999999988889
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
+..++..|+++.|+.+|.+++..++..|+|+|++++.+...........++++.|+.++.+.+ ..++..++|+|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999765222345556899999999998776 8999999999999997
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
+.+.........+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 75332333344689999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
|++.+++.+.+.+++.|+++.|+.+|.++++.++..|+|+|+|++.+
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999988888999999999999999999999999999999999863
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.6e-30 Score=235.33 Aligned_cols=242 Identities=28% Similarity=0.417 Sum_probs=225.7
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
|.+|.|+.+|.+++++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++|+|++++.+++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57999999998888999999999999999998889999999999999999999999999999999999999998999999
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+...|+++.|+.++.+++ ..++..++|+|.+++...+.........+++|.|+.++.++++.++..++++|++|+...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999766 8999999999999997653434444557899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+.+.|+++.|+.++.++++.+++.|+|+|+|++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy9169 357 AGN 359 (440)
Q Consensus 357 ~~~ 359 (440)
...
T Consensus 241 ~~~ 243 (252)
T 4hxt_A 241 SGG 243 (252)
T ss_dssp HTC
T ss_pred cCC
Confidence 754
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=4.7e-30 Score=234.01 Aligned_cols=240 Identities=34% Similarity=0.552 Sum_probs=221.9
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
...+.++..|.+++++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46899999999999999999999998877766778889999999999999999999999999999999999988999999
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
+...|+++.|+.++.+++ ..++..++|+|.+|+.+...........+++|.|+.++.++++.++..++|+|++++..++
T Consensus 92 i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999999999999876 8999999999999998863222445567899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|..++.++++.+++.|+|+|+||+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q psy9169 357 A 357 (440)
Q Consensus 357 ~ 357 (440)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 24
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.8e-29 Score=251.81 Aligned_cols=290 Identities=16% Similarity=0.182 Sum_probs=243.4
Q ss_pred HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q psy9169 115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARA 193 (440)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~ 193 (440)
..+.+|.|+.+|.++++.+|..|+|+|.+++.++++.+..+++.|+||.|+.+|.+++..+++.|+|+|+||+.. ++..
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 467899999999999999999999999999998899999999999999999999999999999999999999985 6889
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------------------C
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------------------T 255 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------------------~ 255 (440)
+..+.+.|+|++|+.+|.+..+.++++.++++|.+|+..+ .....+..+++|.|+.++. .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997655889999999999999864 2334444678999999871 2
Q ss_pred CCHHHHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccC------CChhHHHHHHHHHHHhhcCChH---------
Q psy9169 256 TDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGNDH--------- 319 (440)
Q Consensus 256 ~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~~--------- 319 (440)
.++.++..++++|.+|+..+++..+.+++. |+++.|+.+|.+ .+...+..|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999888767788875 677899999864 4567899999999999875211
Q ss_pred ----------------HHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169 320 ----------------QTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382 (440)
Q Consensus 320 ----------------~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~ 382 (440)
..+.+++.++++.|+.+|. +.++.+++.|+|+|+||+++...+. ..+...+.+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~---------~~~~~~v~~~ 354 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG---------RYIRSALRQE 354 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH---------HHHHHHHTSH
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc---------HHHHHHHHHc
Confidence 1122334456778899996 4578999999999999998864331 1224567788
Q ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 383 GGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
||++.|..|+.++++++.+.|..+|..+-.+..
T Consensus 355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 355 KALSAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999999999876544
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=8.5e-29 Score=250.08 Aligned_cols=325 Identities=17% Similarity=0.207 Sum_probs=282.6
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..++.|++.|.+ ++++++..|+..|+++.. .. .+...+++.|++|.|+.+|.++++.++..|+++|.+++.+++..+
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 358899999974 589999999999999743 33 367888899999999999988999999999999999998877888
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+.+.|++|.|+.+|.+++.+++..++.+|.+++..++..+..+...|+++.|+.++.+.++......++.+|.+++..
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999988899999999999999999999877778888999999999976
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
+ .........++++.|+.++.+.++.++..++|+|.+++...+... ...|+++.|+++|.++++.++..|+++|+|
T Consensus 217 ~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 217 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp T-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 333344457899999999999999999999999999997764321 124789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
++.++++..+.+.+.|+++.|+.++.+. ++.++..|+++|+|++.+.++. +..+..+.+.|+++.|..
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~----------~~~~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------EMAQNAVRLHYGLPVVVK 362 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------HHHHHHHHHTTCHHHHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH----------HHHHHHHHHcCChhHHHH
Confidence 9998888999999999999999999763 3789999999999998764431 234567778999999999
Q ss_pred HhcCCc-HHHHHHHHHHHHhhCCCC
Q psy9169 391 LQHHEN-ETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 391 L~~~~~-~~v~~~a~~il~~~~~~~ 414 (440)
++.+++ ++++..|.++|.++..+.
T Consensus 363 lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 363 LLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HhccccchHHHHHHHHHHHHHhcCh
Confidence 999886 699999999999998654
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=6e-28 Score=253.74 Aligned_cols=333 Identities=15% Similarity=0.184 Sum_probs=283.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+++|+++++.++..|+++|.++..... .....+.+.|+++.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 578999999999999999999999999987644 4456777899999999999888999999999999999998889999
Q ss_pred HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.+.+.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..++..|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCc-hHHHHHHHHHHHHHhcc
Confidence 9999999999999999876 56778899999999975 667888999999999999998776 78999999999999987
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-C-hhHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-E-TTILTAALRTV 310 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~-~~v~~~al~~L 310 (440)
..... ...+++|.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus 391 ~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 391 ATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp CTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 63321 2367999999999999999999999999999999888889999999999999999763 3 38999999999
Q ss_pred HHhhcCChH---HHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHhhcCcc--------------
Q psy9169 311 GNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGEL-------------- 372 (440)
Q Consensus 311 ~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~-------------- 372 (440)
+||+..+++ ....+.+.|+++.|+.+|.+++. .++++|+|+|+||+.++..+ ..+++.|..
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 24568889999999999998874 99999999999999865443 444432110
Q ss_pred ------------------------------------hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 373 ------------------------------------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 373 ------------------------------------~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
...+..+.+.|+++.|..++.+++++|+..|..+|..+..+
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 01123477899999999999999999999999998887643
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.9e-29 Score=230.03 Aligned_cols=241 Identities=33% Similarity=0.537 Sum_probs=219.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
...++.++..|+++|++++..|++.|+++++.. ++.+..+++.|++|.|+.+|.++++.++..|+|+|++++.++++.+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 356899999999999999999999999988863 3567889999999999999988889999999999999999889999
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+...|+++.|+.++.+++ ..++..++|+|.+|+.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999886555488889999999999998775 89999999999999987
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
.+.........+++|.|+.++.++++.++..++++|++++..+++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 63333344557899999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred hhc
Q psy9169 313 IAT 315 (440)
Q Consensus 313 l~~ 315 (440)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=2.2e-28 Score=222.58 Aligned_cols=242 Identities=26% Similarity=0.370 Sum_probs=222.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.++.|++.|.+++++++..|+++|.++....+ .....+++.|+++.|+.+|.++++.++..|+|+|.+++.++++.+..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 48899999999999999999999999976554 46788899999999999998889999999999999999988999999
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
+.+.|+++.|+.+|.++++.++..|+|+|++++..++..+..+...|+++.|+.++.+.+ ..++..++|+|.+++.+.+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999887889999999999999999999777 8999999999999998753
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
.........+++|.|+.++.++++.++..++++|++++..+++..+.+.+.|+++.|+.++.++++.++..|+++|+|++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 33344556789999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCh
Q psy9169 315 TGND 318 (440)
Q Consensus 315 ~~~~ 318 (440)
...+
T Consensus 241 ~~~~ 244 (252)
T 4hxt_A 241 SGGW 244 (252)
T ss_dssp HTCB
T ss_pred cCCC
Confidence 7654
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=248.92 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=281.0
Q ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..++.|++.|.++ +++++..|+..|+++. ... .....+++.|+++.|+.+|.++++.++..|+++|.+++..++..+
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 3588999999864 8999999999999764 433 367888899999999999988899999999999999998877888
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+++.|+++.|+.+|.++++.++..++.+|.+++..++..+..+...|+++.|+.++.+.....++..++.+|.+|+..
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999877889999999999999999999887778899999999999976
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
. .........++++.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 214 ~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 214 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp T-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 33344455789999999999999999999999999999765432 1123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCC-C-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~-~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
|+.+++..++.+.+.|+++.|+.++.+. + +.++..|+++|+||+.+.++. ......+.+.|+++.|..
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~----------~~~q~~v~~~~~l~~L~~ 359 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------EMAQNAVRLHYGLPVVVK 359 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------HHHHHHHHHTTHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH----------HHHHHHHHHccChHHHHH
Confidence 9999888899999999999999999863 3 799999999999999754321 122345667899999999
Q ss_pred HhcCCc-HHHHHHHHHHHHhhCCCCc
Q psy9169 391 LQHHEN-ETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 391 L~~~~~-~~v~~~a~~il~~~~~~~~ 415 (440)
++.+++ +.+++.|..+|.++...++
T Consensus 360 lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 360 LLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HhCccCchHHHHHHHHHHHHHccCHH
Confidence 998875 7999999999999986543
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.96 E-value=2.4e-27 Score=219.06 Aligned_cols=236 Identities=14% Similarity=0.227 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhh
Q psy9169 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 209 (440)
Q Consensus 131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~l 209 (440)
.+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788899999999964 567778899999999999 9999999999999999999999999999999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy9169 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289 (440)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~ 289 (440)
|.++.+..+++.++|+|++++++. +...+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~------------------------------------------~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQ------------------------------------------EAGLLQFLRLDGFS 170 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTC------------------------------------------HHHHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCC------------------------------------------cHHHHHHHHCCCHH
Confidence 986544677777777777777654 23345677789999
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 369 (440)
Q Consensus 290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~ 369 (440)
.|+.+|.+++..++..|+|+|++++.++++.++.+++.|+++.|+.+|.++++.++..|+++|+||+.+.+..+..+-.
T Consensus 171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~- 249 (296)
T 1xqr_A 171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE- 249 (296)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885543332211
Q ss_pred CcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCcc
Q psy9169 370 GELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 370 ~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~~ 416 (440)
....+..+|++. ++.++.+. +.++|++|..||++||.++++
T Consensus 250 -~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 250 -PELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp -GGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHCC----
T ss_pred -cHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHHcCCCCC
Confidence 113467777764 77788676 799999999999999976543
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=2.8e-27 Score=248.70 Aligned_cols=325 Identities=16% Similarity=0.210 Sum_probs=279.8
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
..++.|++.|.+ .+++++..|+.+|+++.. .. .+...+.+.|+++.|+.+|.++++.++..|+|+|.+|+..++..+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 468999999985 489999999999999754 33 347788889999999999988899999999999999999888888
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.+++..........++.+|.+|+..
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999888889999999999999999999887777888899999999975
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
. .........++++.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 350 ~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 350 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp T-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 33334445789999999999999999999999999999766432 1224689999999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCC-C-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~-~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
|+.+++..++.+++.|+++.|+.+|.+. + +.++..|+|+|+||+.+.++. ......+...|+++.|..
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~----------~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA----------EMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH----------HHHHHHHHHTTCHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHcCCHHHHHH
Confidence 9999988999999999999999999863 3 489999999999998764331 123456678899999999
Q ss_pred HhcCCcH-HHHHHHHHHHHhhCCCC
Q psy9169 391 LQHHENE-TVYQKCYKIISMAFNDS 414 (440)
Q Consensus 391 L~~~~~~-~v~~~a~~il~~~~~~~ 414 (440)
++.+++. .+++.|+.+|.++....
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HhcCCChHHHHHHHHHHHHHHhcCH
Confidence 9988874 99999999999987543
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=5.5e-25 Score=194.67 Aligned_cols=201 Identities=30% Similarity=0.487 Sum_probs=183.3
Q ss_pred HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q psy9169 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 193 (440)
...|..+.|+.+|.++++.++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34588999999999999999999999999999888999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
+..+.+.|+++.|+.+|.+++ ..++..++|+|.+++.+...........+++|.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999886 8999999999999998653333344567899999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888888899999999999999999999999999999999974
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=5.4e-25 Score=194.70 Aligned_cols=200 Identities=32% Similarity=0.523 Sum_probs=183.6
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
..|..+.|+.+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+|.+++ ..++..++|+|.+++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHH
Confidence 4588999999999999999999999999999888889999999999999999999876 899999999999999765344
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
.......+++|.|+.+|.+.++.++..++|+|++++...++....+++.|+++.|+.+|.++++.++..|+++|+|++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44455678999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
++.....+.+.|+++.|..++.++++.+++.|+|+|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999975
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-24 Score=217.59 Aligned_cols=324 Identities=13% Similarity=0.111 Sum_probs=255.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcH--
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELLD-DENPNTQFEATWALTNIASGTSE-- 150 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~-- 150 (440)
-.+.+++.|.+++.+.+..|+..|..+ +..+ ...+.+++ .|+++.|+++++ ..+..+.+.++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYL-SLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHH-hCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 346677777787777799999999865 5443 33455554 677999999996 47889999999999999874331
Q ss_pred ------------------------------------HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169 151 ------------------------------------QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194 (440)
Q Consensus 151 ------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r 194 (440)
.+..+.+.|++|.|+.+++++++.+++.|+|+|.||+.+ +..|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 356778999999999999999999999999999999987 8899
Q ss_pred HHHHhcCChHHHHhhhCCCCcH--HHHHHHHHHHHhhhhCCCCCCCHH--HHhhHHHHHHHhhcC-CCH-----------
Q psy9169 195 DLLLGLGTMPQILALVQPNTPT--TFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDV----------- 258 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~L~~ll~~-~d~----------- 258 (440)
..+++.|++++|+.++.+.... ..+..|+++|.++....+|..-+. ...+++|.|+.+|.. +..
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999977633 278999999999997654321100 013899999999983 211
Q ss_pred --HHHHHHHHHHHHhccCCh----hhHHHHHhc-CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc----
Q psy9169 259 --ETLSDICWALSYISDGHN----DKIQAVVDT-GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA---- 327 (440)
Q Consensus 259 --~i~~~a~~~L~~l~~~~~----~~~~~l~~~-g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---- 327 (440)
--...|+.+|.||+..++ +..+.++.. |+++.|..+|.+++..++..|+++++||+...+...+.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998863 334667885 999999999999999999999999999998554221234322
Q ss_pred --CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHH
Q psy9169 328 --GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH--ENETVYQKC 403 (440)
Q Consensus 328 --g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~--~~~~v~~~a 403 (440)
+.++.|+.++.+++..+|+.|+|+|+|++.+.+...+.+ ++..+|++.+..++.. ++++++.++
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l------------l~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL------------LTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH------------TTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH------------HHccccHHHHHHHHhccCCCHHHHHHH
Confidence 238899999999999999999999999987665543333 3334788888888777 899999999
Q ss_pred HHHHHhhCCC
Q psy9169 404 YKIISMAFND 413 (440)
Q Consensus 404 ~~il~~~~~~ 413 (440)
..++..+++.
T Consensus 720 ~~~l~NL~~~ 729 (778)
T 3opb_A 720 LMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999873
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=3.9e-22 Score=184.19 Aligned_cols=199 Identities=12% Similarity=0.104 Sum_probs=173.1
Q ss_pred HHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHH-hccCCChHHHHHHHHHHH
Q psy9169 76 VPEMIEGMKSS------------NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALT 142 (440)
Q Consensus 76 i~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~-lL~~~~~~i~~~a~~~L~ 142 (440)
++..+..|.++ +.+.+..|+..|..++... +....+++.|++|.|+. +|.++++.++..|+|+|+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45556666654 2367888999999886432 34567889999999999 999999999999999999
Q ss_pred HHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH
Q psy9169 143 NIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 221 (440)
Q Consensus 143 nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~ 221 (440)
+++.+++..+..+++.|++|.|+.+|++ ++..+++.|+|+|+|++.+.+.....+...|+++.|+.+|.+++ ..++..
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~ 186 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVK 186 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHH
Confidence 9999999999999999999999999995 47899999999999999988887788888999999999999876 899999
Q ss_pred HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
++|+|++++.+.+.........+++|.|+.+|.+.++.++..++++|++|+...+.
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 99999999988644455666789999999999999999999999999999987553
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=178.37 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=171.3
Q ss_pred CHHHHHHhccCCCh--HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 118 VVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~--~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
.+|.|+++|.++++ +++..|+++|.+++.++++.+..+++.|+||.|+.+|+++++++++.|+|+|.||+.+++..+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999988887 8999999999999998899999999999999999999999999999999999999998899999
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----------------CCCHH
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------------TTDVE 259 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------------~~d~~ 259 (440)
.+.+.|+||+|+.+|.+..+.++++.++.+|++|+..... ...+..+.+|.|+.++. ..++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~--k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG--HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh--HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998544489999999999999976522 23444678999988662 13679
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccCC------ChhHHHHHHHHHHHhhcC
Q psy9169 260 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------ETTILTAALRTVGNIATG 316 (440)
Q Consensus 260 i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~------~~~v~~~al~~L~nl~~~ 316 (440)
++..+.++|.+|+..+++..+.+.+. |+++.|+.+++.. +...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999887777888876 7789999999652 457899999999999864
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=177.01 Aligned_cols=200 Identities=14% Similarity=0.164 Sum_probs=168.0
Q ss_pred ccCCHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 72 IKMTVPEMIEGMKSSNP--KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
..+++|.++++|+++++ ++|..|++.++++...+. ++...+++.|+||.|+++|.++++++|..|+|+|.||+.+++
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45789999999999988 899999999998865443 567889999999999999999999999999999999999889
Q ss_pred HHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---C------------C
Q psy9169 150 EQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P------------N 213 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~------------~ 213 (440)
+++..+.+.|+||.|+++|. +++.+++++|+.+|+||+.. +..+..+.. +++++|+.++. . .
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999999998 57899999999999999977 556666665 46999998764 0 1
Q ss_pred CcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q psy9169 214 TPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHT------TDVETLSDICWALSYISDG 274 (440)
Q Consensus 214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~------~d~~i~~~a~~~L~~l~~~ 274 (440)
.+..++++++++|.||+........... ..++++.|+.+++. .+...++.++.+|.||+..
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 2468999999999999986422223232 25789999999864 2568999999999999864
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.1e-21 Score=192.53 Aligned_cols=280 Identities=12% Similarity=0.102 Sum_probs=225.4
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCC-------------------C------------------cHHHHHH
Q psy9169 74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERH-------------------P------------------PIDELIE 115 (440)
Q Consensus 74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~-------------------~------------------~~~~ii~ 115 (440)
..++.|++.+.+ ++..+.+.++..|.|+....++ | ....+++
T Consensus 376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e 455 (778)
T 3opb_A 376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR 455 (778)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence 347889999984 7888999999999999764331 0 1245567
Q ss_pred hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-Cc
Q psy9169 116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN---LAEQATWALGNIAGD-GA 191 (440)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~-~~ 191 (440)
.|++|.|+.++.++++.+|..|+|+|.+++.. ++++..+++.|+++.|+.+|.+.... +++.|+++|.+|+.. +|
T Consensus 456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 89999999999989999999999999999855 88999999999999999999987644 899999999999943 33
Q ss_pred hhHHHHHh----cCChHHHHhhhCCCCcH-------------HHHHHHHHHHHhhhhCCCC---C-CCHHHH-hhHHHHH
Q psy9169 192 RARDLLLG----LGTMPQILALVQPNTPT-------------TFLRNIVWAISNLCRNKNP---A-PDFEKI-KICLPLL 249 (440)
Q Consensus 192 ~~r~~i~~----~g~i~~L~~ll~~~~~~-------------~~~~~a~~~L~~l~~~~~~---~-~~~~~~-~~~~~~L 249 (440)
.. ++. .|++++|+.+|..+... --...++.+|.||+..+++ . ...... .+++|.|
T Consensus 535 ~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 535 GL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp HH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred HH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 32 221 38999999999832111 2267899999999988632 1 122333 3799999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC------ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169 250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 323 (440)
Q Consensus 250 ~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g------~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~ 323 (440)
..++.+++..++.+|++++++|+.......+.+.+.+ -++.|+.++...+..++..|+++|+|++++++...+.
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ 691 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE 691 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999999999999999986553223443322 3788999999999999999999999999888888888
Q ss_pred HHHc-CCHHHHHHHhcC--CChhHHHHHHHHHHHHhc
Q psy9169 324 VIQA-GGLQKMKKLLSS--SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 324 l~~~-g~l~~L~~ll~~--~~~~i~~~a~~~L~nl~~ 357 (440)
+++. ++++.++.++.. +++.++..++.++.||+.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8887 799999999998 789999999999999995
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=2.4e-15 Score=148.51 Aligned_cols=331 Identities=14% Similarity=0.130 Sum_probs=253.6
Q ss_pred cCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCc
Q psy9169 73 KMTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 73 ~~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
..+++.|.+.+++ .-.+.|..|+..|+.+. ++ ...-+.+++++.|+..| ...|.++...++.+|.++....+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLS-KK----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TT----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHH-HH----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 4678999999985 45899999999999773 22 13445567899999999 34688899999999998876543
Q ss_pred H-----------------HHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHH-hcCChHHHHhh
Q psy9169 150 E-----------------QTMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDLLL-GLGTMPQILAL 209 (440)
Q Consensus 150 ~-----------------~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~-~~g~i~~L~~l 209 (440)
+ .++.+ .+.+.++.|+.+|++.+..+|..++.+|..|+...+. .++.++ ..++++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 2 22233 4568899999999999999999999999999987777 777777 55999999999
Q ss_pred hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d----~~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
|.+.. ..++..++..|.+|+.+...-.+.....++++.|+.++..+. ..+..+++.++.+|...+......+.+.
T Consensus 175 L~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 175 LADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 98776 788999999999999987444444555799999999997644 3789999999999999998787888999
Q ss_pred CChHHHHHhccCCChh------HHH---HHHHHHHHhhcC------ChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHH
Q psy9169 286 GVVPRLVELLDSEETT------ILT---AALRTVGNIATG------NDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEA 348 (440)
Q Consensus 286 g~~~~Lv~lL~~~~~~------v~~---~al~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a 348 (440)
|+++.|..+|..+... ... .++.++.-++.. +..+...+.+.|+++.|++++..+ ...++.+|
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999754321 222 366677777765 234667889999999999998876 45799999
Q ss_pred HHHHHHHhcCChHHHHHHhhcC--c--chHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169 349 AWTISNITAGNSRQIDHVIQEG--E--LNQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAEN 417 (440)
Q Consensus 349 ~~~L~nl~~~~~~~~~~~i~~~--~--~~~~~~~l~~~g~l~~l~~L~-~~~~~~v~~~a~~il~~~~~~~~~~ 417 (440)
..+++.+..|++..-+.+.... . ..+. .+..+..+. .+...+++-.|...++.|+.+.++.
T Consensus 334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~--------li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~ 399 (651)
T 3grl_A 334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPA--------IVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKG 399 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCEESSSSCEEH--------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHhhccCCCCCCcCh--------HHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999877555444321 0 0011 122233333 3456899999999999999876543
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=3.3e-15 Score=137.76 Aligned_cols=255 Identities=13% Similarity=0.113 Sum_probs=196.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|+..|.++++.++..|++.|.++- . .++++.|+.+|.++++.++..|+++|+.+....... .
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~---~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~-~ 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG---G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-D 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC---C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-H
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC---C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-h
Confidence 57899999999999999999999999773 1 236889999999999999999999999987432211 1
Q ss_pred HHHhcCCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.+++.|. .++.++++.++..++++|+++....+... ...++.|+..+.+.+ ..++..++++|.++...
T Consensus 90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~-~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS-TNVRRATAFAISVINDK 158 (280)
T ss_dssp -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC-HHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC-HHHHHHHHHHHHhcCCH
Confidence 1334444 34577889999999999999984333221 235788888888766 89999999999987642
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n 312 (440)
..+|.|..++.++++.++..++++|+.+....+ .+++.|+.+|.++++.++..|+++|++
T Consensus 159 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 159 -----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999864333 247889999999999999999999999
Q ss_pred hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392 (440)
Q Consensus 313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~ 392 (440)
+. +...++.|..++.++ .++..|+++|+.+.. +. .++.|..++
T Consensus 219 ~~-----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~--~~----------------------~~~~L~~~l 261 (280)
T 1oyz_A 219 RK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD--KT----------------------LLPVLDTML 261 (280)
T ss_dssp TT-----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--GG----------------------GHHHHHHHH
T ss_pred hC-----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc--hh----------------------hhHHHHHHH
Confidence 85 235788899999764 489999999999853 22 245555544
Q ss_pred -cCCcHHHHHHHHHHHHh
Q psy9169 393 -HHENETVYQKCYKIISM 409 (440)
Q Consensus 393 -~~~~~~v~~~a~~il~~ 409 (440)
.++++++...+...+++
T Consensus 262 ~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 262 YKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp TTSSCCHHHHHHHHHHTC
T ss_pred hcCCCcHHHHHHHHHhhc
Confidence 45677888887777653
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=5.3e-15 Score=146.07 Aligned_cols=294 Identities=11% Similarity=0.204 Sum_probs=230.5
Q ss_pred CCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHHH-hCCHHHHHHhccCCChHHH
Q psy9169 74 MTVPEMIEGMKS--SNPKMRMIATRSARKMLSKERHP----------------PIDELIE-AGVVPICVELLDDENPNTQ 134 (440)
Q Consensus 74 ~~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~ii~-~g~i~~Lv~lL~~~~~~i~ 134 (440)
.+++.|+..|+. .|.++...++..|.++++....+ ..+.+++ .+.++.|+.+|.+.+..++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR 139 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR 139 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence 578999999984 57888888999998888755422 1223433 5789999999999999999
Q ss_pred HHHHHHHHHHhCCCcH-HHHHHHh-cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169 135 FEATWALTNIASGTSE-QTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 212 (440)
Q Consensus 135 ~~a~~~L~nla~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~ 212 (440)
..++.+|..|+...++ ..+.+.. .++++.|+.+|.++.+.+|..++..|.+|+.+++..++.+.-.|+++.|..++..
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 9999999999988877 6666774 5999999999999999999999999999999999999999999999999999985
Q ss_pred CC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH------HHHHH---HHHHHHHhccCC-----
Q psy9169 213 NT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------ETLSD---ICWALSYISDGH----- 275 (440)
Q Consensus 213 ~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~------~i~~~---a~~~L~~l~~~~----- 275 (440)
.. ...+...|+.++.||.+............+++|.|..++...++ ..... ++.++.-++..+
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 33 24788999999999999863345556667899999999875432 13333 555666665442
Q ss_pred -hhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcC---------CHHHHHHHhcCC-Ch
Q psy9169 276 -NDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG---------GLQKMKKLLSSS-RV 342 (440)
Q Consensus 276 -~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---------~l~~L~~ll~~~-~~ 342 (440)
......+.+.|+++.|++++..+ ...++..|+.+++.+..+++...+.+.... ++..|+.++.+. ..
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 23456788999999999998766 467999999999999999998888776543 344455556554 46
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169 343 NIVKEAAWTISNITAGNSRQIDHVI 367 (440)
Q Consensus 343 ~i~~~a~~~L~nl~~~~~~~~~~~i 367 (440)
.+|..|+.++..+..++.+.-..++
T Consensus 380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999999988765433333
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.65 E-value=1.8e-14 Score=132.89 Aligned_cols=202 Identities=13% Similarity=0.096 Sum_probs=162.2
Q ss_pred HHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169 113 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 113 ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
....+.++.|+..|.++++.++..|+++|+++.. .++++.|+.+|.++++.++..|+++|+.+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 4456789999999999999999999999999972 24689999999999999999999999999754322
Q ss_pred hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 272 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~ 272 (440)
.. ..++.|...+.++.+..++..++++|..++.... .....+++.|..++.+.++.++..++++|+.+.
T Consensus 88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 11 1234444333344458999999999999986531 113467899999999999999999999999876
Q ss_pred cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169 273 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 352 (440)
Q Consensus 273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L 352 (440)
. .++++.|+.++.++++.++..|+++|+.+....+ .+++.|..++.++++.++..|+++|
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4 2479999999999999999999999999854333 3567889999999999999999999
Q ss_pred HHHh
Q psy9169 353 SNIT 356 (440)
Q Consensus 353 ~nl~ 356 (440)
+++.
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9986
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=1.9e-15 Score=161.12 Aligned_cols=316 Identities=14% Similarity=0.108 Sum_probs=224.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-H---HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE-L---IEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~-i---i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
..++.+++.+.++++..+..++.++..++...+ +.... . .-..++|.|+.++.++++.+|..|+++|.++....+
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA-EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT-THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH-HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999998875432 11110 0 012468888888888999999999999999886644
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
......+ .++++.+..++.++++.++..++++|+.++...+..-...+ .++++.++.++.+.+ ..++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~-~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD-ENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHH
Confidence 3221111 25788899999999999999999999999976543211111 246777888877655 88999999999999
Q ss_pred hhCCCCCCCH--HHHhhHHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169 230 CRNKNPAPDF--EKIKICLPLLNQLI-----------HT-----------TDVETLSDICWALSYISDGHNDKIQAVVDT 285 (440)
Q Consensus 230 ~~~~~~~~~~--~~~~~~~~~L~~ll-----------~~-----------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~ 285 (440)
+.... .... .....++|.+...+ .+ .+..++..+..++..++...++.. + .
T Consensus 284 ~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~ 358 (852)
T 4fdd_A 284 AEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-P 358 (852)
T ss_dssp TTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGG---H-H
T ss_pred hcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHH---H-H
Confidence 86541 1010 02346677777776 22 123468888899988886543221 1 2
Q ss_pred CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy9169 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365 (440)
Q Consensus 286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~ 365 (440)
.+++.+..++.++++.++..|+++||+++.+........+ .++++.+..++.++++.+|..|+|+|++++.....+.
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-- 435 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-- 435 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC--
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch--
Confidence 3578888888999999999999999999988776544333 3588999999999999999999999999986321100
Q ss_pred HhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 366 VIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 366 ~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
...+. .+.++.|...+.++++.|+..|..++..+..
T Consensus 436 ------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 436 ------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp ------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 00010 1234556666667789999999999888764
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=3.4e-15 Score=159.15 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=201.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
.++.+++.+.++++.++..|++++..++.... ..+. -.++++.++.++.++++.++..++++|..++...++..
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRT----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 45667777788999999999999987764332 1111 12567888888888999999999999999997655443
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhC----------CC-------
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQ----------PN------- 213 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~----------~~------- 213 (440)
...+. ++++.++.++.+.++.++..|++++..++... ..+..+. -...++.++..+. .+
T Consensus 251 ~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 251 LPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 32222 57888999999999999999999999998753 3333221 1234666666662 11
Q ss_pred ----CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy9169 214 ----TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289 (440)
Q Consensus 214 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~ 289 (440)
.+-.+++.++.+|..++..... .....++|.+..++.+.++.++..++++++.++.+..+.... .-.++++
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~ 403 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIP 403 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence 1124678888899888876421 234568888999999999999999999999999887654332 2246789
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
.++.++.++++.|+..|++++++++...........-.++++.|+..+.++++.++..|+|+|.+++.+
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999863221100011125778889999888999999999999999964
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.60 E-value=1.2e-13 Score=140.62 Aligned_cols=305 Identities=12% Similarity=0.093 Sum_probs=225.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.++.++..++++++.++..|+..+..+...-.........-..++|.+..++.++++.+|..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---h
Confidence 4677788888888899999998888887654322122233456788999999999999999999999999743111 1
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
.....++|.+..++.+++++++..++.+|+.++..... ......++|.|..++.+.+ ..++..++.++..++..-.
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~ 434 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLG 434 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHcC
Confidence 12235889999999999999999999999988743221 1122346788888886655 7899999999999886431
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
+. .....++|.+..++.+.+..++..++.+++.++...... .....++|.|..++.+++..++..++.+++.++
T Consensus 435 ~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 435 VE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp GG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 11 112457899999999999999999999999998643321 123467899999998889999999999999997
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH 394 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~ 394 (440)
..-.. . ..-..+++.|..++.++++.+|..++++|+.++..-... . + ....++.|..+...
T Consensus 509 ~~~~~--~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~-~~~~~p~l~~l~~d 569 (588)
T 1b3u_A 509 EVCGQ--D-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----L-QSEVKPILEKLTQD 569 (588)
T ss_dssp HHHHH--H-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----H-HHHHHHHHHHHTTC
T ss_pred HhcCH--H-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----h-HHHHHHHHHHHcCC
Confidence 53221 1 123468899999999999999999999999998642211 0 0 11235566777889
Q ss_pred CcHHHHHHHHHHHHhhC
Q psy9169 395 ENETVYQKCYKIISMAF 411 (440)
Q Consensus 395 ~~~~v~~~a~~il~~~~ 411 (440)
++++|+..|..++..+-
T Consensus 570 ~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 570 QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp SSHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHhh
Confidence 99999999999998764
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.58 E-value=1.5e-13 Score=139.86 Aligned_cols=305 Identities=11% Similarity=0.073 Sum_probs=223.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH-HH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ-TM 153 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~-~~ 153 (440)
.+|.+...+.++++.++..++.++..+....+ .......++|.++.++.++++.++..|+++|..++...+.. +.
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 45556666677777788888877777654221 12234567899999998899999999999999998653321 11
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
...-..++|.+..++.++++.+|..++++|+.++..-. .......++|.+..++.+.+ ..++..++.++..++...
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDEC-PEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSC-HHHHHHHHTTCHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhc
Confidence 12334678999999999999999999999999983211 11122347888889888665 889999999999888654
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
.. ......++|.+..++.+.+..++..++.++..++..-... .....+++.+..+|.+++..++..|+.+++.+
T Consensus 395 ~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 395 GI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp CH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 21 1234678999999999999999999999999987432111 11224578899999999999999999999999
Q ss_pred hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc
Q psy9169 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQH 393 (440)
Q Consensus 314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~ 393 (440)
+...... ..-..+++.|..++.++++.+|..++++++.++..-... .+ ....++.+..++.
T Consensus 469 ~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~-----~~~~~~~l~~~l~ 529 (588)
T 1b3u_A 469 VEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------IT-----TKHMLPTVLRMAG 529 (588)
T ss_dssp HHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HH-----HHHTHHHHHHGGG
T ss_pred HHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HH-----HHHHHHHHHhhCC
Confidence 8643221 112357888988888888999999999999997531110 01 1124667777888
Q ss_pred CCcHHHHHHHHHHHHhhCC
Q psy9169 394 HENETVYQKCYKIISMAFN 412 (440)
Q Consensus 394 ~~~~~v~~~a~~il~~~~~ 412 (440)
+++++|+..+.+.+..++.
T Consensus 530 d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 530 DPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp CSCHHHHHHHHHHHHHHGG
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 8899999999999888874
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=1.5e-13 Score=121.05 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=159.3
Q ss_pred hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
.+.++.|+.+|.++++.++..|+++|+.+.. .++++.|+.+|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3579999999999999999999999999863 2689999999999999999999999999863
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
.+.++.|+.++.+.+ ..++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 246888999997766 8899999999998853 2478999999999999999999999999853
Q ss_pred hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169 276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355 (440)
Q Consensus 276 ~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl 355 (440)
...++.|..++.++++.++..|+.+|+.+.. ..+++.|..++.++++.++..|.++|.++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2358899999999999999999999999832 23567889999999999999999999999
Q ss_pred hcCC
Q psy9169 356 TAGN 359 (440)
Q Consensus 356 ~~~~ 359 (440)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.57 E-value=9.3e-14 Score=141.67 Aligned_cols=322 Identities=14% Similarity=0.129 Sum_probs=216.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.+.+.|+++++.++..|+.++.++. . +.. ...+++.+..++.++++.+|..|++++..++..+++..
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~-~~~----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~- 156 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR---V-DKI----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV- 156 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC---S-GGG----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---h-HHH----HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc-
Confidence 34566666777788888877777776542 1 111 12356778999999999999999999999988766532
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.+.+.++.|..+|.++++.++..|+++|+.++.+++..+...+..+.+..|+..+...+ +-.+..++.++..++..
T Consensus 157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT-EWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHTSCCC-
T ss_pred --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC-chHHHHHHHHHHHhCCC-
Confidence 23578899999999999999999999999999876533101111234566666665554 56666777777766632
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~---~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
.......+++.+..++++.++.++..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|
T Consensus 233 ----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 ----DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI 306 (591)
T ss_dssp ----SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence 2334577899999999999999999999999999752 333334332 345677777664 7788999999999
Q ss_pred HHhhcCChH-----------------HH-HHHH-------Hc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 311 GNIATGNDH-----------------QT-DCVI-------QA----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 311 ~nl~~~~~~-----------------~~-~~l~-------~~----g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
+.++...+. .+ ...+ +. .+++.|..++.+.+..++++++|+|++++...+.
T Consensus 307 ~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 307 NLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 988752211 10 1111 11 2456677777788899999999999999987654
Q ss_pred HHHHHhh-------c-Cc------chHHHHHHHHcC-----cHHHHHHHhc-CCcHHHHHHHHHHHHhhCCCC
Q psy9169 362 QIDHVIQ-------E-GE------LNQMALLVEESG-----GLEKLEALQH-HENETVYQKCYKIISMAFNDS 414 (440)
Q Consensus 362 ~~~~~i~-------~-~~------~~~~~~~l~~~g-----~l~~l~~L~~-~~~~~v~~~a~~il~~~~~~~ 414 (440)
..+.+++ . +. ...+..++.... ++..|...+. ...++++..+.++|..|-..-
T Consensus 387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 4444443 1 10 112223333322 3455544443 456788888888888885543
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.55 E-value=1.6e-13 Score=119.82 Aligned_cols=184 Identities=18% Similarity=0.204 Sum_probs=159.0
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 196 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~ 196 (440)
+..+.++++|.++++.++..|+++|+.+.. .+.++.|+.+|.++++.++..|+++|+.+...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 568899999999999999999999998863 26789999999999999999999999998532
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
..++.|+.++.+.+ ..++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 76 ----~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 46888999998765 8999999999998753 2478899999999999999999999999863
Q ss_pred hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
.+.++.|..++.++++.++..|+++|+.+. .+ .+++.|..++.++++.++..|.++|.++.
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 245889999999999999999999999982 22 25678888999999999999999999874
No 50
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.53 E-value=3e-13 Score=133.48 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=196.9
Q ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCCCc
Q psy9169 74 MTVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 74 ~~i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~~~ 149 (440)
..++.|+..+.++ ++..+..|+.++..++............ ..+++.++.++.++ ++.+|..|+++++++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999988 9999999999999887533111111111 24788889999666 79999999999999865322
Q ss_pred HHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 150 EQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 150 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
.... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+.+.+ ..++..+++.+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHH
Confidence 2111 0111124677778888888999999999999998544321111111156777777776554 7899999999998
Q ss_pred hhhCC------------------CCCCCHH--HHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169 229 LCRNK------------------NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQA 281 (440)
Q Consensus 229 l~~~~------------------~~~~~~~--~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~ 281 (440)
++... ....... ....++|.++..+.. ++..++..++.+|..++....+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--- 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--- 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence 88642 1122222 236678888887753 23478999999999998654422
Q ss_pred HHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 282 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 282 l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..+++.++.++.++++.+|..|+|+|++++..
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 11 2457888888999999999999999999998654 2211122 46899999999999999999999999999864
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.53 E-value=4.7e-13 Score=117.82 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=157.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.|++.|.++++.++..|+..|..+-. .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 468999999999999999999999987621 2578999999988999999999999999863
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.+.++.|+.+|.++++.++..++++|+.+... ..++.|+.++.+.+ ..++..++++|..+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC--
Confidence 36789999999999999999999999998632 46888999887666 8999999999999843
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
...++.|..++.+.++.++..++++|+.+.. ..+++.|..++.++++.++..|..+|+++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2478999999999999999999999999853 22478899999999999999999999998
Q ss_pred hcCCh
Q psy9169 314 ATGND 318 (440)
Q Consensus 314 ~~~~~ 318 (440)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76544
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.51 E-value=1.8e-12 Score=113.07 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=158.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
...+.+++.|.++++.++..|+..|..+- . .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG--D----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC--C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC--C----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45789999999999999999999998762 1 2468999999999999999999999999863
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
..+++.|+.+|.++++.++..|+++|+.+... ..++.|+.++.+.+ ..++..++++|..+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDED-WFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHTC--
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC--
Confidence 25789999999999999999999999998532 36888999887665 8999999999999853
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
...++.|..++.+.++.++..++++|+.+.. + .+++.|..++.++++.++..|..+|+++
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999942 2 2478889999889999999999999987
Q ss_pred h
Q psy9169 314 A 314 (440)
Q Consensus 314 ~ 314 (440)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.48 E-value=4.1e-12 Score=129.47 Aligned_cols=256 Identities=14% Similarity=0.134 Sum_probs=196.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..+..+.+.|.+++...+..++.-+..+.....+. ..+.+.+++++.+++..++..+..++.+++..+++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-
Confidence 45788999999999988888877776555433311 2357778888899999999999999999876444432
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
.-+++.|.+-|.++++.++..|+.+|+++. .+.... .+++.+..++.+.+ +.+++.|++++.+++...
T Consensus 85 ----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhC
Confidence 245788888999999999999999999996 233322 23677888887665 899999999999999864
Q ss_pred CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
+ +.....++++.+..+|.+.|+.++..|+++|..++..+++....-+..+.+..|+..+.+.++..+...+++++.+
T Consensus 153 -p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 153 -A--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp -C--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred -h--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 2 2333467899999999999999999999999999976653210001123467777777778888889999999998
Q ss_pred hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
+..++.... .+++.+..++.+.++.++.+|+|++..+..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred CCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 866554433 356778888999999999999999999874
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.45 E-value=1.8e-11 Score=130.62 Aligned_cols=317 Identities=15% Similarity=0.160 Sum_probs=215.5
Q ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCC
Q psy9169 74 MTVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDE--NPNTQFEATWALTNIASG 147 (440)
Q Consensus 74 ~~i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~ 147 (440)
..++.++..+.++ ++.++..++.++..++..-. + +.+. -..+++.+...+.++ ++.++..|+.+|..++..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-P--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-H--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-H--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578889999988 99999999999998875321 1 1111 134677788888555 689999999999998754
Q ss_pred CcHHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 148 TSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 148 ~~~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
-..... ......+++.+...+.+++.+++..++++|..++...+..-...+...+++.++..+.+.+ ..++..+++.+
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 222111 1111236778888888888999999999999999654433223333467888888776555 78999999988
Q ss_pred HhhhhCC------------------CCCCCHH--HHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhH
Q psy9169 227 SNLCRNK------------------NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKI 279 (440)
Q Consensus 227 ~~l~~~~------------------~~~~~~~--~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~ 279 (440)
..++... .+..... ....++|.++..+.. ++..++..+..++..++....+..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~ 363 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh
Confidence 8887541 0112222 236778888888752 345788899999998886443221
Q ss_pred HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 280 ~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+ ..+++.+...+.++++.++..|+++++.++.+.. ......+ .++++.++..+.++++.+|..|+|+|++++..
T Consensus 364 ---~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 ---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp ---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred ---H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 1 2457777888888999999999999999998764 3333333 35899999999999999999999999999975
Q ss_pred ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 359 NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 359 ~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
.+... ....+.. ..++.|...+.++ +.|+..|..++..+..
T Consensus 439 ~~~~~-------~~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 439 LPEAA-------INDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp CGGGT-------SSTTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred Cchhc-------ccHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 33210 0000100 1133344444443 7777777777766653
No 55
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.38 E-value=4.1e-12 Score=135.32 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=191.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH-HH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MT 154 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~-~~ 154 (440)
++.+.+.+.+.++..+..|+.++..++...........+ ..+++.|+..+.++++.++..++|+|+.++..-.... ..
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 445556667889999999999999886432201122222 2578889999988899999999999999985321100 00
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHHh
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-----ARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISN 228 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~ 228 (440)
-.-..+++.|+..+.++ +.++..|+|+|.+++... ......+ ..+++.|+.++.+.+ +..++..+++++..
T Consensus 450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 01124678888888876 899999999999998431 1111111 235777888887533 36789999999999
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTT---------------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~---------------d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~ 293 (440)
++.... .........++|.++..+... ...++..++.+|..++........... ..+++.++.
T Consensus 527 l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 604 (861)
T 2bpt_A 527 MVEYAT-DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR 604 (861)
T ss_dssp HHHHCC-GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred HHHHcc-hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence 998763 223334566777777776521 345778899999998865443222111 246788888
Q ss_pred hccCCCh-hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169 294 LLDSEET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 294 lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 359 (440)
.+.+.+. .++..++.+++.++..........+. .+++.|...+.+.++.++..++++++.++...
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 8887766 89999999999998644332222333 37889999998888899999999999998643
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.38 E-value=1.1e-11 Score=132.03 Aligned_cols=275 Identities=15% Similarity=0.142 Sum_probs=193.3
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
++.+...+.++ ++.++..|+.++..++..-............+++.|...+.++++.++..++.+|..++...+....
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666766 8999999999998875321100000001123577777777888999999999999999865444333
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-----------------hHHHHHhcCChHHHHhhhCCC---
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-----------------ARDLLLGLGTMPQILALVQPN--- 213 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-----------------~r~~i~~~g~i~~L~~ll~~~--- 213 (440)
..+...+++.+...+.+.+..++..|+.++..++..... .-... -..+++.++..+...
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d 339 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNED 339 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence 333336778888889999999999999999998854211 10111 134678888887642
Q ss_pred ---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcCChH
Q psy9169 214 ---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVP 289 (440)
Q Consensus 214 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g~~~ 289 (440)
++..++..+..+|..++.... ......+++.+...+.+.+..++..++++++.++.+.. ......+. .+++
T Consensus 340 ~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~ 414 (861)
T 2bpt_A 340 PEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALP 414 (861)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence 224688899999999886542 12245678888888888999999999999999997753 33333332 5789
Q ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChHHH--HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 290 RLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
.|+..+.++++.++..+++++++++..-.... ...+ ..+++.|+..+.+. +.++..|+|+|.+++.+
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999985321100 0011 13577888888775 89999999999999864
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.37 E-value=4.8e-12 Score=124.80 Aligned_cols=310 Identities=14% Similarity=0.037 Sum_probs=211.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCCC-cHHHH
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGT-SEQTM 153 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~~-~~~~~ 153 (440)
..++..|.++++.+ ..++.++..++.... +. . .-.+++|.|+..+.++ ++.++..++.+|..++... ++...
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~-~~-~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEI-PV-N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHG-GG-T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhc-cc-c--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 44677777777767 777777777765321 10 0 0136889999999777 8999999999999998642 22111
Q ss_pred HHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 154 TVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
... ..+++.+..+|.++ +..++..|+++++++...-... .......-+++.+...+.+.+ ..++..++++|..++
T Consensus 168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIM 245 (462)
T ss_dssp GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHH
Confidence 111 24788899999988 7999999999999976432110 000011113555555555444 899999999999998
Q ss_pred hCCCCCCCHHHHh-hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh---------------------hHHHHHhcCCh
Q psy9169 231 RNKNPAPDFEKIK-ICLPLLNQLIHTTDVETLSDICWALSYISDGHND---------------------KIQAVVDTGVV 288 (440)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~---------------------~~~~l~~~g~~ 288 (440)
........ .... .+++.+...+.+.++.++..+++.+..++..... .....+ ..++
T Consensus 246 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 246 SLYYQYME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHCGGGCT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 75421111 1234 7788888888889999999999999888754210 101001 2356
Q ss_pred HHHHHhccC-------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh-
Q psy9169 289 PRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS- 360 (440)
Q Consensus 289 ~~Lv~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~- 360 (440)
|.++..|.. .+..++..|+.+|+.++...+. .++ ..+++.+...+.++++.+|..|+++|+.++.+..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 777777743 2357899999999999875442 122 2467888889999999999999999999998643
Q ss_pred HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 361 RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 361 ~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
+.+. ..+ ...++.|..++.++++.|+..|.++|.++...
T Consensus 400 ~~~~------------~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 400 SQLK------------PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTTC------------TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2110 111 24577888888999999999999999998753
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.36 E-value=7e-11 Score=120.91 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=210.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
......+++++.+++...+..+...+..++..+ + +.++ -++..|.+-|.++++.++..|+++|+++.. ++..
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~ 140 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC 140 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH
Confidence 456788999999999999988888888775332 2 2111 257888888899999999999999999983 3322
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..+++.+..+|.++++.+|..|+.+++++....|+.. .+.++.+..++.+.+ +.++..++++|..++..
T Consensus 141 -----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 141 -----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCER 209 (618)
T ss_dssp -----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHh
Confidence 2568899999999999999999999999997656532 257788888887655 89999999999999865
Q ss_pred CCCCCCHHHHhhHHHHHHHhhc---------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIH---------------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD- 296 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~---------------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~- 296 (440)
. +.. ......++|.++.+|. ..++..+..++.+|+.++..+++.. ..+.+.|..++.
T Consensus 210 ~-~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~ 282 (618)
T 1w63_A 210 S-PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATN 282 (618)
T ss_dssp H-HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHT
T ss_pred C-hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhc
Confidence 3 111 2234567777777664 2488899999999999998765432 233455555442
Q ss_pred -----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCc
Q psy9169 297 -----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGE 371 (440)
Q Consensus 297 -----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~ 371 (440)
+.+..+...|++++..+.. .+.. .. .+++.|..++.++++.+|..|..+|..++...+..+
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l~~-~~~l----~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-------- 348 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDIKS-ESGL----RV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-------- 348 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHSCC-CHHH----HH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH--------
T ss_pred cccccchHHHHHHHHHHHHHhcCC-CHHH----HH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH--------
Confidence 3345788999999998744 2221 11 356788888999999999999999999986543321
Q ss_pred chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169 372 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 413 (440)
Q Consensus 372 ~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~ 413 (440)
. .....+..++.+++..|+.+|..++..+...
T Consensus 349 --------~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 349 --------Q--RHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp --------G--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred --------H--HHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 1 1234556666677777777777777777653
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.36 E-value=3.2e-11 Score=123.44 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=192.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.+.+.|+++++.++..|++++.++.. ..++ ..+++.+..+|.+.++.+|..|+.++.++...+++...
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~ 178 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME 178 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH
Confidence 456778888889999999999999988741 1222 35688899999889999999999999999987665432
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--------------CCcHHHH
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--------------NTPTTFL 219 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--------------~~~~~~~ 219 (440)
+.++.+..+|.+.++.++..|+++|+.++..++.....+ ...++.++.+|.. ..++-.+
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q 251 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence 678889999999999999999999999997765432222 2578888877653 2246777
Q ss_pred HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169 220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~ 293 (440)
..++.+|..++... + .....+.+.|..++. +.+..+...+++++..+...+ .. . ..+++.|..
T Consensus 252 ~~il~~L~~l~~~~-~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~l----~-~~a~~~L~~ 320 (618)
T 1w63_A 252 VRILRLLRILGRND-D----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-GL----R-VLAINILGR 320 (618)
T ss_dssp HHHHHHHHHHTTTC-H----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-HH----H-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-H----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-HH----H-HHHHHHHHH
Confidence 88888888888653 1 223445555555543 235689999999999886532 11 1 135788999
Q ss_pred hccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 294 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+|.++++.++..|+.+|+.++...+.. +. ...+.++.++.+++..+|+.|..+|..++..
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 999999999999999999998765432 22 3567888999999999999999999999864
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.32 E-value=3.3e-11 Score=128.57 Aligned_cols=276 Identities=16% Similarity=0.170 Sum_probs=196.7
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
++.+...+.++ +..++..|+.++..++..-............+++.+...+.+.+++++..++.+|..++...+....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44566667766 6899999999999886532100000111123677778878888899999999999999876555444
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------------------hHHHH--HhcCChHHHHhhhCCC
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR------------------ARDLL--LGLGTMPQILALVQPN 213 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~r~~i--~~~g~i~~L~~ll~~~ 213 (440)
..+...+++.++..+.+.++.++..+++++..++..... ..... .-..+++.++..+...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 445457899999999888899999999999988743100 00000 0123567777777532
Q ss_pred ------CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcC
Q psy9169 214 ------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTG 286 (440)
Q Consensus 214 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g 286 (440)
++..++..+..+|..++..... .....++|.+...+.+.++.++..++++++.++.+.. +.....+ ..
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~ 408 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQ 408 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HH
Confidence 2357888999999988876421 2245788888888889999999999999999997754 3333322 45
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH--HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+++.++..|.++++.++..|++++++++...+... ...+ ..+++.|...+.++ +.++..|+|+|.+++..
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999987543211 0111 14677888888775 88999999999999853
No 61
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.31 E-value=2.3e-11 Score=125.79 Aligned_cols=215 Identities=12% Similarity=0.091 Sum_probs=160.0
Q ss_pred CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-CchhH
Q psy9169 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF-LQLLSSPHLNLAEQATWALGNIAGD-GARAR 194 (440)
Q Consensus 117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r 194 (440)
.++| +++.|+++++..|..|+++|++|+. ++..+..+...|++..+ ..+|.+++.+|++.|+|+|+||+.+ ++..+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4454 5677899999999999999999996 57888888888888765 5678889999999999999999954 57788
Q ss_pred HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
+.+...|++++|..++... ...+......... .. ......+. .+...++++|.+|+.+
T Consensus 113 ~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~-~~-~~~~~~~~-----------~~~~~~l~lL~~L~e~ 170 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSK-LL-KAQQRLVW-----------DITGSLLVLIGLLALA 170 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGG-SC-HHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhh---------HHHHhhhcccccc-cc-HHHHHHHH-----------HHHHHHHHHHHHHHhC
Confidence 8899999999999887532 2233333222111 11 11111111 2445677888889988
Q ss_pred ChhhHHHHHhcCChHHHHHhccCC---ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHH---HHHHHhcCCChhHHHHH
Q psy9169 275 HNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ---KMKKLLSSSRVNIVKEA 348 (440)
Q Consensus 275 ~~~~~~~l~~~g~~~~Lv~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~---~L~~ll~~~~~~i~~~a 348 (440)
+++....+...+.++.|+.+|.+. ..+++..|+.+|.+++..++...+.+.+.|... .+..+..+ ....+..+
T Consensus 171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la 249 (684)
T 4gmo_A 171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMA 249 (684)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHH
Confidence 888888888899999999998442 357999999999999999999999888877543 33333333 44467889
Q ss_pred HHHHHHHh
Q psy9169 349 AWTISNIT 356 (440)
Q Consensus 349 ~~~L~nl~ 356 (440)
|++|.|+.
T Consensus 250 ~giL~Ni~ 257 (684)
T 4gmo_A 250 CGVLHNVF 257 (684)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 99999985
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.15 E-value=2.3e-10 Score=126.68 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=200.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.++.++..+.|+|++.+..|+..+.+.+..... ....-....+++.|++.|.+.++.+|..|+.+|+.++...++. .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~ 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H
Confidence 478899999999999999999999887654321 1111122356888999998899999999999999998765441 1
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-----HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-----DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-----~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
+ ..+++.|+..+.++++.+|..|+.+|+.++....... ..-....++|.|...+.+..+..++..++.++..+
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1 2467888999999888999999999999984322210 11122357899999998544588999999999999
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHH
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALR 308 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~ 308 (440)
+........ .....+++.+...+.+.++.++..++.+++.++...++. + -..+++.++..|.+.+ ..++..++.
T Consensus 162 ~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 162 LSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 964322111 134778889999999999999999999999999765532 1 2346788888875543 467788899
Q ss_pred HHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359 (440)
Q Consensus 309 ~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~ 359 (440)
+++.++...+......+ ..+++.+...+.+.++.+|..+++++..++...
T Consensus 237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 99998865433211111 358899999999888999999999999998753
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.09 E-value=3.2e-08 Score=100.98 Aligned_cols=293 Identities=10% Similarity=0.085 Sum_probs=199.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT 152 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~ 152 (440)
......+++.+.|++...+..+...+..++..+ + +.++ =++..+.+-|.++++.++..|+.+|+++.. ++..
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRNPTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH
Confidence 467899999999999999998888887665322 2 2221 146777888889999999999999999964 4433
Q ss_pred HHHHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 153 MTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
+ .+++.+.++| .+.++.||..|+.++.++....|.. +...+.++.+..+|.+.+ +.++..++.++..++
T Consensus 145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLA 215 (621)
T ss_dssp H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHH
Confidence 2 4678889999 8899999999999999999755543 222478999999996555 899999999999999
Q ss_pred hCCCCCCCHHHHhhHHHHHH----HhhcCC-------------CHHHHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHH
Q psy9169 231 RNKNPAPDFEKIKICLPLLN----QLIHTT-------------DVETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLV 292 (440)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~L~----~ll~~~-------------d~~i~~~a~~~L~~l~~~~-~~~~~~l~~~g~~~~Lv 292 (440)
... +. .....+|.++ .++... ++..+...+..+..++..+ ++....+.+ +++.++
T Consensus 216 ~~~-~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il 288 (621)
T 2vgl_A 216 QKN-PE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL 288 (621)
T ss_dssp HHC-HH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred HhC-hH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence 765 21 2233444444 443221 6889999999999988643 333333332 344444
Q ss_pred Hhc---------cCCCh--hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 293 ELL---------DSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 293 ~lL---------~~~~~--~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
..+ .+.+. .|..+|++++..+.. +++... .++..|..++.++++.+|..|..+|..++...+.
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence 332 22233 788888888888752 332222 3567788999888999999999999999876431
Q ss_pred HHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHHHHHHHHhhC
Q psy9169 362 QIDHVIQEGELNQMALLVEESGGLEKLEALQH-HENETVYQKCYKIISMAF 411 (440)
Q Consensus 362 ~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~~ 411 (440)
. ..+. .....+..++. +++..|+.+|..++..+.
T Consensus 363 ~--------------~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 363 H--------------EAVK--THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp H--------------HHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred H--------------HHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 0 0111 11233333334 556666666666665554
No 64
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.06 E-value=1.5e-08 Score=105.10 Aligned_cols=272 Identities=12% Similarity=0.117 Sum_probs=189.9
Q ss_pred CCHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC--------hHHHHHHHHHHH
Q psy9169 74 MTVPEMIEGMK---SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN--------PNTQFEATWALT 142 (440)
Q Consensus 74 ~~i~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~--------~~i~~~a~~~L~ 142 (440)
.++..|-+.|. ++++.++.-|+..+..+-++.. . .++..|...|.+++ +.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45666666676 6678888888888875533322 1 14677888884433 678999999999
Q ss_pred HHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHH
Q psy9169 143 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI 222 (440)
Q Consensus 143 nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a 222 (440)
.+..++.. ..+++.|..+|.+++..+++.|+.+||.+...+... .++..|+..+.+..+..+++.+
T Consensus 463 la~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence 98766532 135677888888877777889999999885332211 1345566655545557899999
Q ss_pred HHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhcc--CChhhHHHHHhcCChHHHHHhc-cCC
Q psy9169 223 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISD--GHNDKIQAVVDTGVVPRLVELL-DSE 298 (440)
Q Consensus 223 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~--~~~~~~~~l~~~g~~~~Lv~lL-~~~ 298 (440)
+.+|+.+..+.. ..++.++..|. +.++.++..++.+++.-.. ++... +..|+..+ .+.
T Consensus 529 algLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~ 590 (963)
T 4ady_A 529 AVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDS 590 (963)
T ss_dssp HHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCS
T ss_pred HHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCC
Confidence 999999887762 34566666654 5788888888887765443 34333 45455554 456
Q ss_pred ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHH-HhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHH
Q psy9169 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK-LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMAL 377 (440)
Q Consensus 299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~ 377 (440)
+..++..|+.+||.+..++++ .++.++. ++++.++.+|..|+++|+.+++|++..
T Consensus 591 ~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------------- 646 (963)
T 4ady_A 591 NDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------------- 646 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH---------------
T ss_pred cHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH---------------
Confidence 778999999999999888763 3455555 445778999999999999999987531
Q ss_pred HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 378 LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 378 ~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
..++.|..+.+.++..|++.|...|........
T Consensus 647 -----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred -----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 125567777888888888888877776665433
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.05 E-value=1.5e-09 Score=120.23 Aligned_cols=328 Identities=13% Similarity=0.151 Sum_probs=208.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----cHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCc
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP----PIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~----~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~ 149 (440)
.++.++..+.++++.+|..|+.++..++..-... ....-....++|.|+..+. ++++.++..|+.+|..++...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 4567777778888888888888888877543311 0111223457899999996 5889999999999999984221
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
..... .-..+++.|+..|.+++..+|..|+.+|+.++...+. .+ -...++.++..+....+..++..++.++..+
T Consensus 167 ~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 167 GLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp SSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 11100 1134678888888888999999999999999965432 12 2345788888876544345677788888888
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC------------
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS------------ 297 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~------------ 297 (440)
+..... .-......++|.+...+.+.+++++..+++++..++....+.....+ ..+++.++..+..
T Consensus 242 ~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 875421 11112467899999999988999999999999988865443222222 2345555554431
Q ss_pred -------------------------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169 298 -------------------------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 352 (440)
Q Consensus 298 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L 352 (440)
....++..|+.+++.++...+.....++ ..+++.+...+.+.++.+|..+..++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1235788999999999875543333344 35788888888878889999999988
Q ss_pred HHHhcCChH---HHH---HHhh-cCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 353 SNITAGNSR---QID---HVIQ-EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 353 ~nl~~~~~~---~~~---~~i~-~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
..++..... ... ..-. .|........+. ..++.+...+.++++.++..+..++..+..
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP--NIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTT--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhh--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 877642000 000 0000 000000011111 123445555677788888777777766643
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.03 E-value=4.7e-10 Score=115.94 Aligned_cols=212 Identities=14% Similarity=0.098 Sum_probs=137.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHH-hccCCChHHHHHHHHHHHHHhCC-CcHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALTNIASG-TSEQT 152 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~-lL~~~~~~i~~~a~~~L~nla~~-~~~~~ 152 (440)
.+.++++.|+|+++..|..|+++|.+++. +. .....+...|++..++. +|.+++.+++.+|+++|.||+.+ .++..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-Cc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 45668889999999999999999999974 22 34677788888887655 56889999999999999999864 46778
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC----CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD----GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~----~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
..++..|+++.|..++.... ..+...... ....+..+ .. +..+++++|.+
T Consensus 113 ~~l~~~~il~~L~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~------------~~~~~l~lL~~ 166 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVL--------ETLTTSEPPFSKLLKAQQRLV------WD------------ITGSLLVLIGL 166 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHH--------HHHHCBTTBGGGSCHHHHHHH------HH------------HHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhH--------HHHhhhccccccccHHHHHHH------HH------------HHHHHHHHHHH
Confidence 88999999999999885321 122222111 00111111 00 12334455555
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc--cCCChhHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTIL 303 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL--~~~~~~v~ 303 (440)
||.+.+.........+.+|.|+.+|.+ ...++...++.+|..++..+.+.++.+.+.+....+..++ ...+...+
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~ 246 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRA 246 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTH
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHH
Confidence 665442211222234566777666632 3457888888888888888888878777776443322222 22333456
Q ss_pred HHHHHHHHHhh
Q psy9169 304 TAALRTVGNIA 314 (440)
Q Consensus 304 ~~al~~L~nl~ 314 (440)
..++.+|.|+.
T Consensus 247 ~la~giL~Ni~ 257 (684)
T 4gmo_A 247 VMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 67788888874
No 67
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.03 E-value=1.4e-08 Score=95.10 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=165.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..++++++++|...+....-.+..+... ++. .+ =++..|.+-+.++++-++-.|+++|++|... +..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-
Confidence 356778899999999999888888776543 212 11 2678888899899999999999999999864 3222
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
.+.+.+.+.|.+.++.|+..|+.+...+....|+.. .++++.+.+++.+.+ +.++.+++.+|..++..+
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC-
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc-
Confidence 356778888999999999999999999998876542 368999999997666 788899999999998754
Q ss_pred CCCCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169 235 PAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~-~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L 310 (440)
...+..++..+.. .++-.+...+..+..++..+ +. ....+++.+...|++.++.|..+|+++|
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 1133334443333 25666666666666666554 22 2245688888999999999999999999
Q ss_pred HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390 (440)
Q Consensus 311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~ 390 (440)
..+...+.. +. ..++..|..++.++++.+|..|...|..++...++.++. .-.-|++
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~------------------~n~~ie~ 331 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA------------------CNLDLEN 331 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH------------------HHHHHHH
Confidence 987552221 11 245677888888999999999999999998876654322 1344788
Q ss_pred HhcCCcHHHHHHHHHHH
Q psy9169 391 LQHHENETVYQKCYKII 407 (440)
Q Consensus 391 L~~~~~~~v~~~a~~il 407 (440)
++.++|..|...|...|
T Consensus 332 li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 332 LVTDANRSIATLAITTL 348 (355)
T ss_dssp -----------------
T ss_pred HccCCcHhHHHHHHHHh
Confidence 88999988887776543
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.01 E-value=5.4e-08 Score=99.28 Aligned_cols=267 Identities=13% Similarity=0.176 Sum_probs=185.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQ 151 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~ 151 (440)
..++.+.+.|+++++..+-.|++++.++.. ..+++ .+++.+..+| .+.+|.+|..|+.++..+...+++.
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence 346777888889999999999999998731 22333 4678889999 8999999999999999998765543
Q ss_pred HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHh----hhCCC-C-----------c
Q psy9169 152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA----LVQPN-T-----------P 215 (440)
Q Consensus 152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~----ll~~~-~-----------~ 215 (440)
.. ..+.++.+..+|.++++.++..|+.+|..++..++.. + ...++.+++ ++... . +
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 22 2489999999999999999999999999999765431 1 123444443 33221 1 3
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh---------cCCCH--HHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI---------HTTDV--ETLSDICWALSYISDGHNDKIQAVVD 284 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll---------~~~d~--~i~~~a~~~L~~l~~~~~~~~~~l~~ 284 (440)
+=.+..++..|..++...++ .......++++.++..+ ++.+. .+.-.++.++..+.. .++...
T Consensus 255 ~w~qi~il~ll~~~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~---- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV---- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred chHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence 55666777777776643211 01111223344444322 22233 788899999998863 222222
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHH
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQI 363 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~ 363 (440)
.++..|..+|.++++.++..|+.+|..++...+. .. ++ ......++..+. +++..++..+.-+|..++. ...+
T Consensus 329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhH
Confidence 3478899999989999999999999999987642 12 22 245778888888 8899999999999999974 4455
Q ss_pred HHHhh
Q psy9169 364 DHVIQ 368 (440)
Q Consensus 364 ~~~i~ 368 (440)
+.++.
T Consensus 403 ~~Iv~ 407 (621)
T 2vgl_A 403 QQIVA 407 (621)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.96 E-value=5.3e-07 Score=73.92 Aligned_cols=188 Identities=15% Similarity=0.214 Sum_probs=156.4
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
..+..++..++.+|.+.-..++.+|+..+.+++...++..+.. +..|+-+++.+....+......+++.++.-.
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~- 101 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK- 101 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-
Confidence 3455678899999999989999999999999998877765543 5667777776666788888889999999776
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~ 314 (440)
...+.+++|.+..-..-.|+.++....++|..++..++.... +++.-+..++.+++..-+..|+.+++-+.
T Consensus 102 ----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 102 ----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp ----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred ----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 246788999999888889999999999999999998886543 45788999999999888889999998876
Q ss_pred cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
.+...... ..+|.|..+|.+.+.-+|.-|.-+|.+++.-++..
T Consensus 173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 65554433 57899999999999999999999999999988763
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.91 E-value=1.8e-06 Score=70.80 Aligned_cols=216 Identities=18% Similarity=0.238 Sum_probs=170.9
Q ss_pred HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchh
Q psy9169 115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 115 ~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~ 193 (440)
+..++..++.+|.++-..+|..|+.++..++..-++....+ +..|+.+++ +....+......++|.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 34678899999998889999999999999998877755543 455666655 455677777889999999777764
Q ss_pred HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
-+ +.+|.|..-..-++ +.++.+..++|..+.+.. | .....++.-+..++.+.|..-+..++..++.+..
T Consensus 105 v~-----~vVp~lfanyrigd-~kikIn~~yaLeeIaran-P----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGD-EKTKINVSYALEEIAKAN-P----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH-----HHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HH-----hhHHHHHHHHhcCC-ccceecHHHHHHHHHHhC-h----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 33 34677766666675 899999999999999886 2 4567788888999999998888888888888887
Q ss_pred CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 353 (440)
Q Consensus 274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~ 353 (440)
+..... ...+|+|..+|.+.+.-|+..|..+|++++.-++.....+. ..+.=+++.+..+++..--+|+
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence 776553 34589999999999999999999999999999987655333 3455566677788888888888
Q ss_pred HHhc
Q psy9169 354 NITA 357 (440)
Q Consensus 354 nl~~ 357 (440)
.++.
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.86 E-value=2.5e-07 Score=79.11 Aligned_cols=224 Identities=14% Similarity=0.055 Sum_probs=172.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 238 (440)
+.+..|..+|.+.++.++..++.+|..+....+..-....-...++.++.++.+.+ ..+.-.|+.||..|..+.+ ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vp--L~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVP--MG 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCC--BC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCC--CC
Confidence 57889999999999999999999999999664443344444568999999997776 8999999999999998852 44
Q ss_pred HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-
Q psy9169 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN- 317 (440)
Q Consensus 239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~- 317 (440)
......+..++..++.+.++-.+..++..++.+.-.+.. .+++..+..++.+.+..++..+++++.|++..+
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 455677888999999999999999999999999433321 134778889999999999999999999999744
Q ss_pred -hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh-cCC
Q psy9169 318 -DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ-HHE 395 (440)
Q Consensus 318 -~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~-~~~ 395 (440)
++... +++.-+..++.+.++.+++.|.-+|-.+....-.+ +.. ..-.+.+.....|. ..+
T Consensus 183 D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~---~~~~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 183 DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVK---IELLKISRIVDGLVYREG 244 (265)
T ss_dssp SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCH---HHHHHHHHHHHHGGGCSS
T ss_pred CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHH---HHHHHHHHHHHHHHHhcC
Confidence 23322 46777899999999999999999999998653110 000 01112344556677 678
Q ss_pred cHHHHHHHHHHHHhh
Q psy9169 396 NETVYQKCYKIISMA 410 (440)
Q Consensus 396 ~~~v~~~a~~il~~~ 410 (440)
.|.++.+|-.+.+.+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 899999998876654
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.84 E-value=3.8e-07 Score=94.73 Aligned_cols=240 Identities=13% Similarity=0.114 Sum_probs=170.5
Q ss_pred CHHHHHHHhcCCC--------HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC
Q psy9169 75 TVPEMIEGMKSSN--------PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146 (440)
Q Consensus 75 ~i~~lv~~L~s~~--------~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~ 146 (440)
.+..|...|.+++ +.++..|+..|.....+..++ .+++.|...|.+++..++..|+.+|+.+..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 3555666666544 567777777777554443321 256778888866677778899999998855
Q ss_pred CCcHHHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169 147 GTSEQTMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225 (440)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~ 225 (440)
++... .++..|+..+ .+.+..++..++.+|+.+....+. .++.+++.|....++-++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 53321 2344455543 345688999999999998866554 467778888766667788888888
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhHH
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTIL 303 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~ 303 (440)
++--+-+... ...++.|++.+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|
T Consensus 566 lglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR 629 (963)
T 4ady_A 566 IALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVR 629 (963)
T ss_dssp HHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHH
T ss_pred HHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHH
Confidence 7755544421 23444444333 466788999999999998877653 367777755 56789999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
..|..+||.++.+++.. .+++.|..++.+++..|+..|+.+|+.+..++.+
T Consensus 630 ~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 630 CGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999988732 2466788888899999999999999999987544
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=1.2e-07 Score=84.93 Aligned_cols=187 Identities=13% Similarity=0.131 Sum_probs=142.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
+.+.+.+.+.++..|..|+..|..++...+......+ ..+++.|...+ ++.++.++..|+.+|+.++..-......
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence 4588889999999999999999999875221100001 23577788888 5999999999999999998532211111
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169 156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 235 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 235 (440)
.-..++|.|+..+.+++..+++.|..+|..++...+ . ..+++.|...+.+.+ ..++..++..|..+.....+
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKN-PSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCC
Confidence 123579999999999999999999999999987533 2 125778888888765 89999999999996654322
Q ss_pred C-CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 236 A-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 236 ~-~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
. ........++|.+..++.+.+++++..|..+++.++..
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 33456678999999999999999999999999998843
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.73 E-value=1.3e-07 Score=88.52 Aligned_cols=245 Identities=10% Similarity=0.095 Sum_probs=139.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
..++.+.+.++++++.++-.|++.+.++... .-.+ .+.+.+.+.|.+.+|.++..|+.+...+....++..+
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~ 175 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK 175 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 6789999999999999999999999988532 1222 2466777888999999999999999999988777432
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHHHhhhh
Q psy9169 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAISNLCR 231 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~ 231 (440)
+.++.+-.++.+.++-++.+|+.+|..+...+.. .+..|+..+..+. ++-.+...+..+..++.
T Consensus 176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999875422 2333444443321 23333334444444443
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~ 311 (440)
..+ ......+++.+..+|++.++.|.-.|+.+|..+...+... . ..++..|..+|.++++.++..|++.|.
T Consensus 242 ~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 242 DED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred ccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 321 1233567788888899999999999999999987633221 1 345778888898999999999999999
Q ss_pred HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354 (440)
Q Consensus 312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n 354 (440)
.++...|...+. .-.-+.+++.+++..+...|.-+|-.
T Consensus 313 ~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 313 KVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp -------------------------------------------
T ss_pred HHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 999887765442 33557788888888877777666543
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.71 E-value=4.9e-08 Score=87.42 Aligned_cols=187 Identities=10% Similarity=0.099 Sum_probs=141.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169 161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 240 (440)
Q Consensus 161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 240 (440)
-+.+...+.+.+...|..++..|..++...+...... -..+++.|...+..+.+..++..++.++..|+..-.+ .-..
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHH
Confidence 3457888899999999999999999885422210000 1234667777774234488999999999999976422 1233
Q ss_pred HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hH
Q psy9169 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DH 319 (440)
Q Consensus 241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~ 319 (440)
....++|.+...+.+.+..++..++.++..++.... .. .+++.+...|.+.++.++..++.+|+.++... +.
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999987543 12 35788999999999999999999999976543 32
Q ss_pred -HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 320 -QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 320 -~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
.....+. .+++.|..++.+.++.+|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1122233 578999999999999999999999999874
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.65 E-value=7.6e-07 Score=76.22 Aligned_cols=186 Identities=13% Similarity=0.075 Sum_probs=148.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..+..+|+..|+.++..++.++.++++.-+ .......-..+++.++.++.+.|..+...|+.||.-+-.+.+-....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRAD-SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 57789999999999999999999999998643 22344444568999999999999999999999999998876654444
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 234 (440)
+. -++.+|..++.++++-+++.++..++.+.--++. .+++..+.+++ .+.+..++..+..++.+++....
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence 43 3578899999999999999999999999433222 23577888889 55559999999999999997653
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
... ....++.-+-.++++.|+.++.-|+.++-.+...
T Consensus 183 D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 322 2356667778889999999999999999988865
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.1e-07 Score=83.57 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=141.3
Q ss_pred HHHhccCCChHHHHHHHHHHHH-HhCCCcHHHHHHHh-cCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhH-H
Q psy9169 122 CVELLDDENPNTQFEATWALTN-IASGTSEQTMTVIN-ANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDG--ARAR-D 195 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~n-la~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~r-~ 195 (440)
+.+.+.+.++.-|.+|+..|.. +..+.+.......+ ..++..|...+ ++.+..++..|+.+|+.++.+- +.+. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556678899999999999999 87543321100001 13577888888 7889999999999999999421 1222 2
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
.. ..++|.++..+.+.. ..++..+..++..++..-++.........+++.|...+.+.++.++..++.+|..++...
T Consensus 101 y~--~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HH--HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 22 236889999998766 789999999999999865332211114568899999999999999999999999998655
Q ss_pred h---hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 276 N---DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 276 ~---~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
. ......+...++|.|.+++.+.++.+|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4 222333336789999999999999999999999999873
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.63 E-value=7.3e-07 Score=79.96 Aligned_cols=195 Identities=7% Similarity=0.055 Sum_probs=141.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCH
Q psy9169 163 KFLQLLSSPHLNLAEQATWALGN-IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDF 239 (440)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~ 239 (440)
.+...+.+.+..-|..|+..|+. ++...+........ ..++..|...+..+.+..++..++.+|..|+.+-. +....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87443322100000 13466777777545558899999999999997653 33222
Q ss_pred HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-
Q psy9169 240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND- 318 (440)
Q Consensus 240 ~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~- 318 (440)
.....++|.++..+.+..+.++..+..++..++...+.....-.=..+++.|+..|.+.++.++..++.+|+.++....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4667899999999999889999998888888876432110000001257889999999999999999999999986544
Q ss_pred --HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 319 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 319 --~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
......+...+++.|..++.+.++.+|..|..++.-++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 233334424689999999999999999999999999884
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.59 E-value=7.8e-09 Score=83.19 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=93.5
Q ss_pred hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169 116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195 (440)
Q Consensus 116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~ 195 (440)
...++.|+.+|.++++.+|..|+++|+.+.. ..++.|+.+|.++++.++..|+|+|+++...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------ 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH------
Confidence 4568889999999999999999999987753 1368999999999999999999999998631
Q ss_pred HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 271 (440)
Q Consensus 196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l 271 (440)
..++.|+.++.+.+ ..++..++|+|..+.. ...++.|..++.++++.++..++++|..|
T Consensus 73 -----~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 24788888887655 8899999999998862 34788999999999999999999998653
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.58 E-value=2.7e-06 Score=81.44 Aligned_cols=268 Identities=16% Similarity=0.170 Sum_probs=172.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHH--HHHHhccC-CChHHHHHHHHHHHHHhCCCcHHHHHHHhcC-
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP--ICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINAN- 159 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~--~Lv~lL~~-~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g- 159 (440)
+++++..++.|+..+..+.+ ..... .... ...+. -++..|.. ++...+.-++.+|..+... ++.|..+.+.+
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~-~~~~~-~~~l-~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~ 210 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQ-NGLHN-VKLV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEK 210 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTS-TTTCC-HHHH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHH
T ss_pred cccchHHHHHHHHHHHHHhc-cCCcc-HhHH-HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHccc
Confidence 34445555666666554432 22121 1111 11222 34455533 3456677889999988865 77788776543
Q ss_pred -CHHHHHHhhCC---------------C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHhhhCCCCcHHHH
Q psy9169 160 -AIPKFLQLLSS---------------P--HLNLAEQATWALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPTTFL 219 (440)
Q Consensus 160 -~i~~L~~lL~~---------------~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~L~~ll~~~~~~~~~ 219 (440)
.++.++.++.. + ...++.+++.+++-++.+. ...+.+...++. +.|+.+++....+.+.
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvv 289 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVS 289 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence 36666544331 1 2567889999999999874 454556555543 6677778877779999
Q ss_pred HHHHHHHHhhhhCCCCCC-C----HHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhcc------------------
Q psy9169 220 RNIVWAISNLCRNKNPAP-D----FEKIKICLPLLNQLIH---TTDVETLSDICWALSYISD------------------ 273 (440)
Q Consensus 220 ~~a~~~L~~l~~~~~~~~-~----~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~------------------ 273 (440)
|-++.+|.|+........ . +.....+++ ++..|. -.|+++..+.-.....|..
T Consensus 290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG 368 (480)
T 1ho8_A 290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK 368 (480)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 999999999997652111 1 112234444 444443 2677776665444333221
Q ss_pred ---CChhhH---------HHHH--hcCChHHHHHhccC----------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy9169 274 ---GHNDKI---------QAVV--DTGVVPRLVELLDS----------EETTILTAALRTVGNIATGNDHQTDCVIQAGG 329 (440)
Q Consensus 274 ---~~~~~~---------~~l~--~~g~~~~Lv~lL~~----------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~ 329 (440)
-++... ..+. +..++..|+++|.+ .++.+..-||.=||.++...|..+..+-+.|+
T Consensus 369 ~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~ 448 (480)
T 1ho8_A 369 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG 448 (480)
T ss_dssp CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred CcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc
Confidence 111110 1111 11467889999973 36778889999999999999999998889999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 330 LQKMKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 330 l~~L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
=..++.+|.+++++|+++|..|+.-+..
T Consensus 449 K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 449 KADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=1.3e-08 Score=81.82 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=93.8
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236 (440)
Q Consensus 157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 236 (440)
....++.|..+|.++++.++..|+++|+++... .++.|+.++.+.+ ..++..++|+|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~-~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNED-WRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSC-HHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCC-HHHHHHHHHHHHhcCC-----
Confidence 346788999999999999999999999887432 2688899998655 8999999999999863
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
...++.|..++.+.++.++..++++|+.+.. ...++.|+.+|.++++.++..|+.+|++|
T Consensus 72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468899999999999999999999999862 12478999999999999999999998764
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.49 E-value=2.9e-06 Score=81.20 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=154.6
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh--CCHHHHHHhcc---------------C--CChHHHHHHH
Q psy9169 79 MIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEA--GVVPICVELLD---------------D--ENPNTQFEAT 138 (440)
Q Consensus 79 lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~--g~i~~Lv~lL~---------------~--~~~~i~~~a~ 138 (440)
++..|.+ ++...+.-++.++..++... ..+..+.+. +.+|.++.++. + ...+++++++
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~--~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIP--EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSH--HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcch--hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4444554 34566777888888777533 234455443 34677765441 1 1356789999
Q ss_pred HHHHHHhCCCcHHHHHHHhcCCH--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-----hHHHHHhcCChHHHHhhh
Q psy9169 139 WALTNIASGTSEQTMTVINANAI--PKFLQLLSS-PHLNLAEQATWALGNIAGDGAR-----ARDLLLGLGTMPQILALV 210 (440)
Q Consensus 139 ~~L~nla~~~~~~~~~i~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-----~r~~i~~~g~i~~L~~ll 210 (440)
.|++.++.. ++..+.+...++. +.|+..++. ..+++.+.++.+|.|+....+. ..+.++..++ ++++..|
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 999999865 5566666666643 667777775 4599999999999999976531 2223333444 4455555
Q ss_pred CC--CCcHHHHHHHHHHHHhh---------------------hhCCCCCCC--HHH---------HhhHHHHHHHhhcC-
Q psy9169 211 QP--NTPTTFLRNIVWAISNL---------------------CRNKNPAPD--FEK---------IKICLPLLNQLIHT- 255 (440)
Q Consensus 211 ~~--~~~~~~~~~a~~~L~~l---------------------~~~~~~~~~--~~~---------~~~~~~~L~~ll~~- 255 (440)
.. -.++++....-+....| ....++... +.. ...++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 42 23455544433322211 122212211 111 13567888888863
Q ss_pred ---------CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 256 ---------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 256 ---------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.|+.+..-||.=|+.++...+.....+-+.|+-..++++|.|++++|+.+|+.|+..+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999999888888888999999999999999999999999998764
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.27 E-value=0.00017 Score=76.06 Aligned_cols=297 Identities=12% Similarity=0.125 Sum_probs=202.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcH--HHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE--QTM 153 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~--~~~ 153 (440)
+..+++.+...+...+..++..+..++...... ..+..+++..|.+.+.+..+. +.|+.++..|+..... ..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 455666677555566677888888877643211 111136788888888554333 8899999999854321 223
Q ss_pred -HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 154 -TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 154 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
.++ +.+|.++..+.+....|+..|-.++..++..- +... ..++|.|+..|.+...=.....++.++..|+.
T Consensus 91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 333 68999999999888899998888887777432 3332 34589999999765546778889999999997
Q ss_pred CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC--hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH--NDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~--~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
.. +..-.....+++|.+.+.+.+..+++...+..++..+|..- .+. ...+|.|++.+.+++. ...++..
T Consensus 164 ~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 164 AA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred Hh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence 64 32222345788999999999999999999999998888522 222 2458999999998843 4556666
Q ss_pred HHHhhcCCh--HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc--CChHHHHHHhhcCcchHHHHHHHHcCcH
Q psy9169 310 VGNIATGND--HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA--GNSRQIDHVIQEGELNQMALLVEESGGL 385 (440)
Q Consensus 310 L~nl~~~~~--~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~--~~~~~~~~~i~~~~~~~~~~~l~~~g~l 385 (440)
|+....-.. .-+-.+ ++|.|.+-|......+++.++-++.|||. .++..+...+. ..+
T Consensus 235 l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--------------~l~ 296 (986)
T 2iw3_A 235 LGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--------------KLL 296 (986)
T ss_dssp HTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--------------TTH
T ss_pred hhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--------------hhh
Confidence 665443222 111112 46888888888888899999999999996 45554444432 124
Q ss_pred HHHHH-HhcCCcHHHHHHHHHHHHhhC
Q psy9169 386 EKLEA-LQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 386 ~~l~~-L~~~~~~~v~~~a~~il~~~~ 411 (440)
+.++. .-...+||+++.|..+++.+.
T Consensus 297 p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 297 PGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55555 345678998888888877774
No 84
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.03 E-value=0.00018 Score=65.65 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=124.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
.+..+++.|++++......++..|..+++.+. ....+++..+++..|+......+...+..++.+|.++..+. ....-
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~-~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDK-DLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCT-THHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcch-HHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccc
Confidence 46788899998899999999999999887555 67899999999999999998889999999999999998763 33333
Q ss_pred HH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--------c--CChHHHHhhhC--CCCcHHHHHH
Q psy9169 155 VI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--------L--GTMPQILALVQ--PNTPTTFLRN 221 (440)
Q Consensus 155 i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--------~--g~i~~L~~ll~--~~~~~~~~~~ 221 (440)
++ ....|..+..++.+....|...|+..|..++..++.....+.. . ..+..|+.+|. +..+.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 33 5668899999999888999999999999998666543333321 1 23778889997 3345888888
Q ss_pred HHHHHHhhhhCC
Q psy9169 222 IVWAISNLCRNK 233 (440)
Q Consensus 222 a~~~L~~l~~~~ 233 (440)
++..+-.+..+.
T Consensus 277 amtLIN~lL~~a 288 (339)
T 3dad_A 277 TVTLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888887777664
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.95 E-value=0.00033 Score=63.87 Aligned_cols=185 Identities=13% Similarity=0.063 Sum_probs=130.9
Q ss_pred hhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHH-hcC
Q psy9169 208 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV-DTG 286 (440)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~-~~g 286 (440)
..|.+++ ...++.++.-|..+...+.......+..+++..|+..+...+..++..++.++..+....+.. ..++ ...
T Consensus 125 ekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~~~ 202 (339)
T 3dad_A 125 EKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAHSD 202 (339)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHCHH
T ss_pred HHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCCHH
Confidence 3344444 566888888888855443344555567888999999999999999999999999999875544 3344 456
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc----------CCHHHHHHHhc---CCChhHHHHHHHHHH
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLS---SSRVNIVKEAAWTIS 353 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~----------g~l~~L~~ll~---~~~~~i~~~a~~~L~ 353 (440)
.+..+..++.+....|...|+..|-.++..++.....+..+ .-++.|+.+|. +.+..++-.|.-.|.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 78899999998888999999999999998776544433321 13778899997 567788888766665
Q ss_pred HHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHH
Q psy9169 354 NITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQ 401 (440)
Q Consensus 354 nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~ 401 (440)
-+..+.+++- ....+...+++.|.-..+..++... ++++.+
T Consensus 283 ~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 283 KTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 5555433221 0124567788888777777766655 555433
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.92 E-value=0.0032 Score=66.41 Aligned_cols=260 Identities=12% Similarity=0.134 Sum_probs=177.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERH-PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
.+..+.+.+.+.... ..|+..+..++..... ++.+.. --+.+|.++..+.+....++..|..++..+...-+...-
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 356666666654333 7788888877744321 233322 236899999999888889998888777777543222211
Q ss_pred HHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 154 TVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
..++|.|+..|.+. ....+..|+.+|..++...+.. -...-..+||.+...+.+.. .++...+..++..+|.-
T Consensus 132 ----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 132 ----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATET 205 (986)
T ss_dssp ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhc
Confidence 34689999999765 4889999999999999765432 11122357788888877666 89999999999999964
Q ss_pred CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh---hhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN---DKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~---~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
-+. ..+.+.+|.|+..+.+++. ...+...|+.-+-... ..... ++|.|..-|......+...++-+
T Consensus 206 ~~n----~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~ 274 (986)
T 2iw3_A 206 VDN----KDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVI 274 (986)
T ss_dssp CCC----TTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHH
T ss_pred CCC----cchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEE
Confidence 322 1256789999999988753 5555555555443222 11112 26777777888888899999999
Q ss_pred HHHhhc--CChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHH
Q psy9169 310 VGNIAT--GNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNI 355 (440)
Q Consensus 310 L~nl~~--~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl 355 (440)
+.|+|. .++.....++- .++|.+.+..+. .+|++|..|..++.-|
T Consensus 275 ~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 275 IDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred EcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 999996 55555555554 578888877765 5788888877777766
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0016 Score=58.99 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=127.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPI-DELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTS--- 149 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~--- 149 (440)
+| +-+.|.|.++..|.+|+..+.+++........ +..+. ....+.+-..+.+.|..++..++.+|..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 66899999999999999999998865432111 11111 2345566677789999999999999998875321
Q ss_pred --HHHHHHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 150 --EQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 150 --~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
.......-..++|.|+.- |.+....++..+..++..++...... .. +++.++..+.+.. +.++..++..|
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Kn-pkv~~~~l~~l 163 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKL-PKLIAAAANCV 163 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSC-HHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccC-HHHHHHHHHHH
Confidence 111122234567777764 78888999999998887776332111 11 2455666666655 78888887777
Q ss_pred HhhhhCCC-CCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169 227 SNLCRNKN-PAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274 (440)
Q Consensus 227 ~~l~~~~~-~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~ 274 (440)
..+..... .... ......+++.+..++.+.|+.|+..|..++..+-..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 77664321 1122 223456777888999999999999999999877644
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.69 E-value=0.0026 Score=68.41 Aligned_cols=262 Identities=8% Similarity=0.071 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHh-------ccCCC---hHHHHHHHHHHHHHhCCCcHHH---
Q psy9169 86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVEL-------LDDEN---PNTQFEATWALTNIASGTSEQT--- 152 (440)
Q Consensus 86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~l-------L~~~~---~~i~~~a~~~L~nla~~~~~~~--- 152 (440)
++++.+..|+.++..++...........+. .++|.++.+ +...+ .+.....+.++..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999987532111112221 123443332 23334 2666667777777664322111
Q ss_pred ---------HHHHhcCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhHHHHH--hcCChHHHH
Q psy9169 153 ---------MTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD---------GARARDLLL--GLGTMPQIL 207 (440)
Q Consensus 153 ---------~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~r~~i~--~~g~i~~L~ 207 (440)
..+ ...++.++.+... .++++...+++++..++.. .+.....+. -..+++.++
T Consensus 335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 1345566665533 3577889999998887641 111111111 113455555
Q ss_pred hhhCCCCc--------------HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-----CCHHHHHHHHHHH
Q psy9169 208 ALVQPNTP--------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWAL 268 (440)
Q Consensus 208 ~ll~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----~d~~i~~~a~~~L 268 (440)
..+..+++ ...++.+..+|..++... + ......+++.+...+.. .+...+..+++++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l 488 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-N---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSF 488 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-T---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-h---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 55532211 135566777777777543 1 22334445555555543 5778899999999
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhc---c--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChh
Q psy9169 269 SYISDGHNDKIQAVVDTGVVPRLVELL---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN 343 (440)
Q Consensus 269 ~~l~~~~~~~~~~l~~~g~~~~Lv~lL---~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~ 343 (440)
+.++.+...... ..++.++.++ . ++++.++..+++++|.++.--....+.+- .+++.|+..++ +.
T Consensus 489 ~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~ 558 (971)
T 2x1g_F 489 QSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SS 558 (971)
T ss_dssp HHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SS
T ss_pred HHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hH
Confidence 999977553321 2233333332 3 34788999999999998752111111111 35666777673 78
Q ss_pred HHHHHHHHHHHHhcCChHHHH
Q psy9169 344 IVKEAAWTISNITAGNSRQID 364 (440)
Q Consensus 344 i~~~a~~~L~nl~~~~~~~~~ 364 (440)
++..|++++.+++......+.
T Consensus 559 v~~~A~~al~~l~~~~~~~l~ 579 (971)
T 2x1g_F 559 MSAQATLGLKELCRDCQLQLK 579 (971)
T ss_dssp CHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999976555443
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.63 E-value=0.0013 Score=70.68 Aligned_cols=255 Identities=12% Similarity=0.098 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc------CCChHHHHHHHHHHHHHhCCCcHHHHHHHhc----
Q psy9169 89 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD------DENPNTQFEATWALTNIASGTSEQTMTVINA---- 158 (440)
Q Consensus 89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~------~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~---- 158 (440)
..+..|...+..++...+ +.++ .-+++.+.+.+. +.+...++.|+.+++.++.+...... ....
T Consensus 376 s~R~aa~~~L~~l~~~~~----~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~ 449 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE----VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNL 449 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH----HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTT
T ss_pred CcHHHHHHHHHHHHHHcc----hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-Cccccccc
Confidence 345566666665543221 1221 113333334443 56678899999999999853110000 0000
Q ss_pred -CCHH----HHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169 159 -NAIP----KFLQLLSSP---HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230 (440)
Q Consensus 159 -g~i~----~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 230 (440)
...+ .++..|.++ ++-+|..|+|+|+.++..-+ .. . -..+++.++..|.+.+ ..++..|+++|.+++
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~-l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-Q-LIELMPILATFLQTDE-YVVYTYAAITIEKIL 524 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-H-HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-H-HHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHH
Confidence 1112 233334556 79999999999999986532 11 1 2346778888887554 889999999999999
Q ss_pred hCCC------CC--C--CHHHHhhHHHHHHHhhcCCC---H--HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169 231 RNKN------PA--P--DFEKIKICLPLLNQLIHTTD---V--ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295 (440)
Q Consensus 231 ~~~~------~~--~--~~~~~~~~~~~L~~ll~~~d---~--~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL 295 (440)
.... +. . -......+++.|..++.... . .....+..+|..++....+...... ..+++.|+..+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l 603 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIV 603 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHH
Confidence 7532 01 1 11234567777777776641 1 1123444444444322111111111 12344444444
Q ss_pred ----cC-CChhHHHHHHHHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 296 ----DS-EETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 296 ----~~-~~~~v~~~al~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
.+ .++.....++.+|+.++.. .++....+ ...++|.+..++.........++...++.+.
T Consensus 604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 23 3456777788899988875 33333323 3357788888887765666666766666655
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.47 E-value=0.0044 Score=66.59 Aligned_cols=266 Identities=9% Similarity=0.081 Sum_probs=145.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH----H--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI----E--AGVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii----~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
++.+++.+. +++.+..|+.++..+++....+.....+ . -+..+.+...+...+.+.....+.++..++...+
T Consensus 243 l~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 243 IQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH
Confidence 344444453 5677888999999998754322111111 1 1222333333333455555566666666653211
Q ss_pred HHHHHHHh--------cCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHH--hcCChHHH
Q psy9169 150 EQTMTVIN--------ANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDG--------ARARDLLL--GLGTMPQI 206 (440)
Q Consensus 150 ~~~~~i~~--------~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~r~~i~--~~g~i~~L 206 (440)
..+.. ...++.++.+... .+..+...++..+..++.+. +..+..+. -..+++.+
T Consensus 321 ---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 321 ---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp ---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11110 1345566666554 24556666666666665411 11111111 01234444
Q ss_pred HhhhCCCCcH--------------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----cCCCHHHHHHHHHHH
Q psy9169 207 LALVQPNTPT--------------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWAL 268 (440)
Q Consensus 207 ~~ll~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~d~~i~~~a~~~L 268 (440)
+..+..+.+. +.+..+..+|..++... + ......+++.+...+ .+.+...+..+++++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~-~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML-G---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4444322211 22344555666655432 1 122334445555555 566788999999999
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhc---cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169 269 SYISDGHNDKIQAVVDTGVVPRLVELL---DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345 (440)
Q Consensus 269 ~~l~~~~~~~~~~l~~~g~~~~Lv~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~ 345 (440)
+.++.+..... ...++.++..+ ..+++.++..+++++|.++.--....+ .+ ..+++.|+..|.+ +.++
T Consensus 474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~ 544 (963)
T 2x19_B 474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELS 544 (963)
T ss_dssp HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGH
T ss_pred HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHH
Confidence 99997654321 12334444433 335678999999999998752111112 23 2688889988855 8899
Q ss_pred HHHHHHHHHHhcCC
Q psy9169 346 KEAAWTISNITAGN 359 (440)
Q Consensus 346 ~~a~~~L~nl~~~~ 359 (440)
..||+++.+++...
T Consensus 545 ~~A~~al~~l~~~~ 558 (963)
T 2x19_B 545 VSSVSTLKKICREC 558 (963)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999643
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.44 E-value=0.063 Score=57.66 Aligned_cols=296 Identities=11% Similarity=0.142 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHH-HhccCCChHHHHHHHHHHHHHhCCC---c--HHHHHHHh-
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV-ELLDDENPNTQFEATWALTNIASGT---S--EQTMTVIN- 157 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~---~--~~~~~i~~- 157 (440)
+.++++...++.++...++- .+...+++.++++.++ .+|. +++++..|+.||+.+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 45567777788888877642 3467888899999999 8884 5789999999999998732 2 12211110
Q ss_pred -cCCHHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169 158 -ANAIPKF--------------LQLLSSPHLNLAEQATWALGNIAG-------DGARARDLLLGLGTMPQILALVQPNTP 215 (440)
Q Consensus 158 -~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~L~~ll~~~~~ 215 (440)
.+.++.+ ...-...+.+.....+.++..+.. ..+..+..+. .++..|+.+-..+ +
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~-d 357 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE-E 357 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCC-c
Confidence 0111111 111122335555555555544431 1122222211 1233444443333 3
Q ss_pred HHHHHHHHHHHHhhhhC--CCCCCC---HHHHhhHHHHHHHhhcCCC-------------------H---HHHHHHHHHH
Q psy9169 216 TTFLRNIVWAISNLCRN--KNPAPD---FEKIKICLPLLNQLIHTTD-------------------V---ETLSDICWAL 268 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~--~~~~~~---~~~~~~~~~~L~~ll~~~d-------------------~---~i~~~a~~~L 268 (440)
.++...++..=..+... .++... ......+++.++.-+.-++ . ..-...-.+|
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L 437 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence 55555544332333321 111111 1223455555555543221 0 0111111333
Q ss_pred HHhccCC-hhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHH-HHHHHHcCCHHHHHHHhcC-----
Q psy9169 269 SYISDGH-NDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSS----- 339 (440)
Q Consensus 269 ~~l~~~~-~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~----- 339 (440)
.+++.-. ++..+.+ ++.+.+.+.+ .+...++.+++++|.|+.+-.+. -..++. .+++.|+.++.+
T Consensus 438 ~~l~~l~~~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 438 VYLTHLNVIDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHCHHHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHH
T ss_pred HHHhccCHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCc
Confidence 3333211 1222221 3444444543 56789999999999999776543 222222 477888888864
Q ss_pred CChhHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 340 SRVNIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 340 ~~~~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
+...++..+||+|+.++. ..++....+ +..|..-+..+++.|...|++.+.++..
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~v------------------l~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTV------------------ILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHHHHHH------------------HHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHH------------------HHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 233566788999998774 233333322 3334444556678899999888887753
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0074 Score=54.61 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=125.6
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCCCcHHH--HH-HH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----h
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASGTSEQT--MT-VI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-----R 192 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~--~~-i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----~ 192 (440)
|-+-|.+.+...|.+|+..|..+....+... .. +. -....+.+...+.+.|..++..++.+|..++.... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567788999999999999988765433211 11 11 12356677888999999999999999998874311 1
Q ss_pred hHHHHHhcCChHHHHhh-hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169 193 ARDLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 271 (440)
Q Consensus 193 ~r~~i~~~g~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l 271 (440)
.........+++.|+.- +.+.. ..++..+..++..++....+. ..+++.+...+.+.++.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 11222234567777765 44444 778888888888777554221 23467777888999999999999998887
Q ss_pred ccCC--hhh-HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 272 SDGH--NDK-IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 272 ~~~~--~~~-~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
.... ... ....+ ..+++.+..+|.+.++.||..|..+++.+..
T Consensus 167 l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 6421 110 11111 2356788889999999999999999998764
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.38 E-value=0.0057 Score=65.76 Aligned_cols=219 Identities=8% Similarity=0.085 Sum_probs=122.7
Q ss_pred CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q psy9169 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL 207 (440)
Q Consensus 129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~ 207 (440)
.+...++.++++++.++.+-.......+. .+++.+..+.. ++++.++..++|+++.++..-...... -..+++.|+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~ 552 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLV 552 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 56778999999999998764432211111 12332222222 347999999999999998321110011 113456666
Q ss_pred hhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCh-hhHHHHHh
Q psy9169 208 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN-DKIQAVVD 284 (440)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~ 284 (440)
..+ + +.+...|++++.++|.... ..-......++..+..++.. .+...+..+..+++.++...+ +.....++
T Consensus 553 ~~l-~---~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~ 627 (971)
T 2x1g_F 553 RGL-N---SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD 627 (971)
T ss_dssp HHH-H---SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHh-C---hHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 666 2 5689999999999997641 11112334566666677766 457888888889988876432 22222221
Q ss_pred cCChHHHHH----hccCC--ChhHHHH---HHHHHHHhhcC--C-----------hHHHHHHHHcCCHHHHHHHhcCC--
Q psy9169 285 TGVVPRLVE----LLDSE--ETTILTA---ALRTVGNIATG--N-----------DHQTDCVIQAGGLQKMKKLLSSS-- 340 (440)
Q Consensus 285 ~g~~~~Lv~----lL~~~--~~~v~~~---al~~L~nl~~~--~-----------~~~~~~l~~~g~l~~L~~ll~~~-- 340 (440)
.++++++. ++... +.+.+.. ++..|+.+..+ . +.....+. ..+++.+..++...
T Consensus 628 -~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~ 705 (971)
T 2x1g_F 628 -IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVE 705 (971)
T ss_dssp -HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccc
Confidence 23344443 33333 2222333 34444444321 1 00111122 35788888887643
Q ss_pred ChhHHHHHHHHHHHHhc
Q psy9169 341 RVNIVKEAAWTISNITA 357 (440)
Q Consensus 341 ~~~i~~~a~~~L~nl~~ 357 (440)
++.+.+.++++++.++.
T Consensus 706 ~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAIT 722 (971)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56899999999999775
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.30 E-value=0.0074 Score=64.63 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=159.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc--HHHHHHHhcCCH
Q psy9169 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS--EQTMTVINANAI 161 (440)
Q Consensus 84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~--~~~~~i~~~g~i 161 (440)
.+.++..+..++.++...++- .+...+++.+.++.+..+|.+ ++++..|+.||+.+..... +.+..++..=.+
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 347788889999999988752 356788888899999998854 8999999999999976543 222233322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhHHH--HHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 162 PKFLQLLS--SPHLNLAEQATWALGNIA------GDGA-----RARDL--LLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 162 ~~L~~lL~--~~~~~v~~~a~~~L~nl~------~~~~-----~~r~~--i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
...+..+. ..+.++.+..+..+..++ ...+ +.+.. -.-.+.++.++.++.+++ .++...++-.+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~-deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY-DETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS-HHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence 11122222 355565544443333222 1111 11111 112367888888888776 45555444444
Q ss_pred HhhhhC----CC-CCCCH---HHHhhHHHHHHHhhcCC------C------H----HHHHHHHHHHHHhccCChh-hHHH
Q psy9169 227 SNLCRN----KN-PAPDF---EKIKICLPLLNQLIHTT------D------V----ETLSDICWALSYISDGHND-KIQA 281 (440)
Q Consensus 227 ~~l~~~----~~-~~~~~---~~~~~~~~~L~~ll~~~------d------~----~i~~~a~~~L~~l~~~~~~-~~~~ 281 (440)
..+... .. ..... .....+++.++.-+.-+ + . +.+......+-.++.-.++ ....
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 433321 11 11111 12344445444444211 1 1 3444444222222222221 1111
Q ss_pred HHhcCChHHHHHhcc---CCChhHHHHHHHHHHHhhcCChHHHHHHH-H----cCCHHHHHHHhc-----CCChhHHHHH
Q psy9169 282 VVDTGVVPRLVELLD---SEETTILTAALRTVGNIATGNDHQTDCVI-Q----AGGLQKMKKLLS-----SSRVNIVKEA 348 (440)
Q Consensus 282 l~~~g~~~~Lv~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~l~-~----~g~l~~L~~ll~-----~~~~~i~~~a 348 (440)
+. .-+.+.+.+.+. +.+....+.|+.+|+.++.+-......+. + ..+++.|..++. .+++.++..+
T Consensus 437 ~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~ 515 (980)
T 3ibv_A 437 MY-SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY 515 (980)
T ss_dssp HH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred HH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 11 011222323342 23467889999999999875432111000 0 014466666665 5678999999
Q ss_pred HHHHHHHhcC---ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH--HhcCCcHHHHHHHHHHHHhhCC
Q psy9169 349 AWTISNITAG---NSRQIDHVIQEGELNQMALLVEESGGLEKLEA--LQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 349 ~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~--L~~~~~~~v~~~a~~il~~~~~ 412 (440)
+|+++..+.- .++.+..++ +.+.. -++++++.|+.+|..++.++..
T Consensus 516 ~~~l~rys~~~~~~~~~l~~~L------------------~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 516 MEILVRYASFFDYESAAIPALI------------------EYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHTGGGGGTCCTTHHHHH------------------HHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHH------------------HHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 9999998752 333333332 22233 3446777788888777777743
No 95
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.29 E-value=0.013 Score=62.84 Aligned_cols=221 Identities=7% Similarity=0.065 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC--C-C--------cHHHHHHhCCHHHHHHhccCC---ChHHHHHHHHHHHHHhCCCcH
Q psy9169 85 SSNPKMRMIATRSARKMLSKER--H-P--------PIDELIEAGVVPICVELLDDE---NPNTQFEATWALTNIASGTSE 150 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~--~-~--------~~~~ii~~g~i~~Lv~lL~~~---~~~i~~~a~~~L~nla~~~~~ 150 (440)
+.++..+..|+.++..++.... . + ....++..-++| .|.++ +|.+|..|+|+++.++..-.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence 5677888888898888764311 0 0 122222222233 33444 89999999999999986532
Q ss_pred HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------ch-hHHHHH--hcCChHHHHhhhCCCC----cH
Q psy9169 151 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-------AR-ARDLLL--GLGTMPQILALVQPNT----PT 216 (440)
Q Consensus 151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~-~r~~i~--~~g~i~~L~~ll~~~~----~~ 216 (440)
.+. -..+++.++..|.+++..|+..|+++|.+++... +. .+..+. -..+++.|..++.... ..
T Consensus 491 -~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 491 -KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 122 2356888999999888999999999999998631 11 122121 1234555556665531 00
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----c-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHH
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----H-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~L 291 (440)
.....++.++..++........ .....+++.|...+ . .+++.....++.+|+.++.........-+...++|.+
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~-p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQ-PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 1223455555555432211111 12334555555444 2 2466777788999988886522112233344567888
Q ss_pred HHhccCCChhHHHHHHHHHHHhh
Q psy9169 292 VELLDSEETTILTAALRTVGNIA 314 (440)
Q Consensus 292 v~lL~~~~~~v~~~al~~L~nl~ 314 (440)
...|.....++...++.+++.+.
T Consensus 647 ~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 647 LTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHHHHH
Confidence 88777665556666666655554
No 96
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.26 E-value=0.005 Score=56.05 Aligned_cols=202 Identities=13% Similarity=0.112 Sum_probs=138.8
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169 153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----ARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAIS 227 (440)
Q Consensus 153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~ 227 (440)
..+...+.+..|+..|..=+-+.+..+..++.++...... .-+.+.. ..++..|+.... ++++.-.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 3455668899999999888888999999999998865432 2233332 223333333332 2344444444555
Q ss_pred hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhccCCChhHHH
Q psy9169 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLDSEETTILT 304 (440)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~~~~~~v~~ 304 (440)
...++. .........+.+-.+.+.+..++-++..+|..++..+..........++.. .+......+|.+++.-.+.
T Consensus 149 ecir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 149 ECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 555443 222222334455566777888899999999999988876655554555543 3567788899999999999
Q ss_pred HHHHHHHHhhcCCh--H-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 305 AALRTVGNIATGND--H-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 305 ~al~~L~nl~~~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
.++..||.|..... . .+..+-+..-+..++.+|.+....++-+|..+.--.+++
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 99999999987533 2 233344445789999999999999999999999888875
No 97
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.23 E-value=0.044 Score=49.86 Aligned_cols=296 Identities=13% Similarity=0.169 Sum_probs=172.4
Q ss_pred HHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHH
Q psy9169 98 ARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLA 176 (440)
Q Consensus 98 l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~ 176 (440)
+.+++-.++ ..++-+++.+++..+...+.-++.++....+..|...+...+-+...+ ...+|.++..+. +++.++.
T Consensus 266 LL~LLmHdS-nAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDS-DAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSH-HHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhccc-ccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence 345655554 458899999999999999988999999999999998875422211111 256788888776 5778999
Q ss_pred HHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-------------HHHHHHHHHHHHhhhhC-C---C-CCC-
Q psy9169 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-------------TTFLRNIVWAISNLCRN-K---N-PAP- 237 (440)
Q Consensus 177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-------------~~~~~~a~~~L~~l~~~-~---~-~~~- 237 (440)
....+.|+|...+....++..+..|+|+.|...+..... -++..+++.++.|+..- - + ...
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~ 422 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT 422 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence 999999999999988999999999999999888763321 24455566666665531 1 0 000
Q ss_pred ----CHHHH-----hhHHHHHHHhhcCCC------HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-Chh
Q psy9169 238 ----DFEKI-----KICLPLLNQLIHTTD------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETT 301 (440)
Q Consensus 238 ----~~~~~-----~~~~~~L~~ll~~~d------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~ 301 (440)
+...+ -+++..|..+|+.+. -++++..+..+.-+...+.-- ..+ ++....+. ...
T Consensus 423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P------kd~---~l~VtDd~rk~N 493 (619)
T 3c2g_A 423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP------KDG---VLNVIDENRKEN 493 (619)
T ss_dssp CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC------CTT---GGGCCCTTTCCC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc------hhh---hccccchhhhhh
Confidence 11111 245666677765432 255666666655555433211 010 11111111 122
Q ss_pred HHHHHH----HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHH---HHhcC---ChHHHHHHhhc
Q psy9169 302 ILTAAL----RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTIS---NITAG---NSRQIDHVIQE 369 (440)
Q Consensus 302 v~~~al----~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~---nl~~~---~~~~~~~~i~~ 369 (440)
+....+ |+.|.=... ..+..+.+++ ..+..|+.+++.- ++.-.....+.++ |+..+ .+..+-.++.
T Consensus 494 LvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~- 571 (619)
T 3c2g_A 494 LIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLV- 571 (619)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHH-
T ss_pred hHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHH-
Confidence 333333 443322111 1223444555 4677777777643 3322222222221 33333 2333322221
Q ss_pred CcchHHHHHHHHcCc--------HHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 370 GELNQMALLVEESGG--------LEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 370 ~~~~~~~~~l~~~g~--------l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
..-+.++.+-. -..++.+.+|.|++|.+.|..++.+|=
T Consensus 572 ----VcDKILeHcP~~Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 572 ----VCDKILEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp ----HHHHHHHHCTTHHHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHhCcchhccceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 11233443332 356888999999999999999998873
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.21 E-value=0.17 Score=54.81 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC--cH---HHHHHHh--
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT--SE---QTMTVIN-- 157 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~--~~---~~~~i~~-- 157 (440)
+.+..++..++.++...++- .+...+.+..+++.+.+.+. .+++++..|+.+|..+.... +. ....+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 34577888888888877642 22455666777887774332 37899999999999998652 11 1111110
Q ss_pred cCCHHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHhhhCCCCcH
Q psy9169 158 ANAIPKFLQ-LL-------------SSPHLNLAEQATWALGNIAG-------DGARARDLLLGLGTMPQILALVQPNTPT 216 (440)
Q Consensus 158 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~L~~ll~~~~~~ 216 (440)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ..+++.++.+.... +.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~-d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE-ER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS-CH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC-cH
Confidence 122222222 11 12234444444444433321 111122221 23566666666555 36
Q ss_pred HHHHHHHHHHHhhhh----CCCCCC-CHHHHhhHHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q psy9169 217 TFLRNIVWAISNLCR----NKNPAP-DFEKIKICLPLLNQLIHTT-------------------DV---ETLSDICWALS 269 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~----~~~~~~-~~~~~~~~~~~L~~ll~~~-------------------d~---~i~~~a~~~L~ 269 (440)
++...++.....++. .+.... -......+++.++..+..+ |. .....+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 777777766666665 321111 1123456666666655221 11 12334555565
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhcc--CCChhHHHHHHHHHHHhhcCChHHH-HHHHHcCCHHHHHHHhcC-----CC
Q psy9169 270 YISDGHNDKIQAVVDTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSS-----SR 341 (440)
Q Consensus 270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~-----~~ 341 (440)
.++.......-.. +.+.+-..+. +.+...+..|++++|.++.+-.... ..++. .+++.|..+... ++
T Consensus 439 ~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~ 513 (1049)
T 3m1i_C 439 YLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNK 513 (1049)
T ss_dssp HHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHH
T ss_pred HHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccch
Confidence 5553322211111 1344444454 3567789999999999986543321 12121 245555554432 23
Q ss_pred hhHHHHHHHHHHHHhcC---ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169 342 VNIVKEAAWTISNITAG---NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412 (440)
Q Consensus 342 ~~i~~~a~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~ 412 (440)
+.++..+||+++.++.- .++....+ ++.|...++++++.|+..|+.++.++..
T Consensus 514 ~~v~~~~~~~lgry~~~~~~~~~~l~~v------------------l~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 514 AVVASDIMYVVGQYPRFLKAHWNFLRTV------------------ILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHH------------------HHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45565799999987632 22222222 3445555677889999999999988865
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.20 E-value=0.019 Score=61.54 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=132.1
Q ss_pred cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169 127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 203 (440)
Q Consensus 127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i 203 (440)
.+.+...+..++++++.++.+-.... ...++.++..+ .++++.++..++|+++.++..-... .. .-..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~-~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH-PV-MINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HH-HHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HH-HHHHHH
Confidence 45577889999999999997643211 12333444433 3357889999999999998431111 11 234688
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCh-hhHH
Q psy9169 204 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN-DKIQ 280 (440)
Q Consensus 204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~-~~~~ 280 (440)
+.|+..+.+ +.++..|++++.++|...... -......+++.+..++.. -+...+..+..+++.++...+ +...
T Consensus 532 ~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN---PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 678999999999999754211 112345666777777765 356888888999999886543 3333
Q ss_pred HHHhcCChHHHHHhc----cCC-ChhHHH---HHHHHHHHhhcCC----h------------------HHHHHHHHcCCH
Q psy9169 281 AVVDTGVVPRLVELL----DSE-ETTILT---AALRTVGNIATGN----D------------------HQTDCVIQAGGL 330 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL----~~~-~~~v~~---~al~~L~nl~~~~----~------------------~~~~~l~~~g~l 330 (440)
..+ ..+++.+...+ ..+ +++.+. ..+.+|+.+..+- + .....+. ..+.
T Consensus 608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 685 (963)
T 2x19_B 608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF 685 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence 322 23444444443 222 333333 4555555554311 0 1111122 2356
Q ss_pred HHHHHHhcC--CChhHHHHHHHHHHHHhc
Q psy9169 331 QKMKKLLSS--SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 331 ~~L~~ll~~--~~~~i~~~a~~~L~nl~~ 357 (440)
+.+..++.. .++.+.+.+|.++..++.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 666666643 356889999999998764
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.14 E-value=0.0023 Score=62.00 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=155.9
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHhCCHHHHHHhc---cC----CC---hHHHHHHHHHHHH
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP-IDELIEAGVVPICVELL---DD----EN---PNTQFEATWALTN 143 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~i~~Lv~lL---~~----~~---~~i~~~a~~~L~n 143 (440)
..+.|+..|-++.+++|--|+..||.++....... +..-....+.-+|+..| +- ++ ..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67889999999999999999999999987543100 00000114455555555 11 11 2589999999999
Q ss_pred HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH
Q psy9169 144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 223 (440)
Q Consensus 144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (440)
+ ..-+.. ..++..|+..+..+..+++--++-.|.-+. +...+ -.++++.++..|.+.+ ..++..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~D-DDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSPD-EDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCSS-HHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCcc-cHHHHHHH
Confidence 8 554432 345555555567778999998888888771 11111 1345777777777766 79999999
Q ss_pred HHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169 224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD--VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 301 (440)
Q Consensus 224 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d--~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~ 301 (440)
.+|.-++ . + .....++..+..+|.+-| ..-.......|+.|+..+... -.+...+|+|..+|.|+-++
T Consensus 321 etLiPIA-~--p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 321 ELLCHFP-I--T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHHTTSC-C--S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHH
T ss_pred HHhhhhc-c--h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHH
Confidence 9999988 1 1 124566777777775432 122334445555555443311 12237899999999999999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHH
Q psy9169 302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK-KLLSSSRVNIVKEAAWTI 352 (440)
Q Consensus 302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~-~ll~~~~~~i~~~a~~~L 352 (440)
||..++.++..+. .. .++..+. ++|-.++++++..+..+-
T Consensus 391 VR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999998877 11 1222232 355556677766554443
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.13 E-value=0.012 Score=52.32 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=115.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHHhhhh---CCCCC
Q psy9169 163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCR---NKNPA 236 (440)
Q Consensus 163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~---~~~~~ 236 (440)
.+...|.+.+..-+..++..|.......+ +.++ ..++.++.-+. .+++..+...++.+|..+.. ..+..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444555555555555555555443222 1121 11222222111 12346777777777766542 22233
Q ss_pred CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
.......-++|.|+.-+.+..+.++..+-.++..++...+. ..+++.+++-+.+.+...+..++..++.+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 34444577899999999999988988888777666642221 12477888889999999999999999998752
Q ss_pred ChHHHHHHHHcCCH---HHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 317 NDHQTDCVIQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 317 ~~~~~~~l~~~g~l---~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
.... ....+ +.+..++.+++..+|..|.-++..+-..
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 2211 23468 9999999999999999999999877653
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.09 E-value=0.02 Score=50.97 Aligned_cols=178 Identities=8% Similarity=0.026 Sum_probs=111.1
Q ss_pred HHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh----CCCchhHHHHH
Q psy9169 123 VELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARARDLLL 198 (440)
Q Consensus 123 v~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~----~~~~~~r~~i~ 198 (440)
...|.+.+..-+..++..|......+++.....++. +++.+.--+.+.+..+...++.+|..+. ..+....+.-.
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 334444455556666666665543323211111111 2232332334667778777777776664 22222212111
Q ss_pred hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
.-++|.|+.-+-+.. ..++..+-.++..++.-. + ...+++.+...+.+.+...+..++..+.++.....-.
T Consensus 131 -~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~-~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 131 -SAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVV-G------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp -HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHH-C------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred -HHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHC-C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 236899998887666 677777776666665432 1 2457888888999999999999999999987432211
Q ss_pred HHHHHhcCCh---HHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169 279 IQAVVDTGVV---PRLVELLDSEETTILTAALRTVGNIAT 315 (440)
Q Consensus 279 ~~~l~~~g~~---~~Lv~lL~~~~~~v~~~al~~L~nl~~ 315 (440)
....+ +.+..++.+++..|+..|+.++..+-.
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 13468 999999999999999999999986643
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.05 E-value=0.13 Score=46.96 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=133.5
Q ss_pred HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH--HH---hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy9169 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE--KI---KICLPLLNQLIHTTDVETLSDICWALS 269 (440)
Q Consensus 195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~---~~~~~~L~~ll~~~d~~i~~~a~~~L~ 269 (440)
..+...+.+..|+..|..=+ -+.++.++.++.++.+......... .. ..++..|+..-. ++++...+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence 33455677888888776655 7889999999999998763222111 22 233444444333 3344444444444
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CHHHHHHHhcCCChhHHH
Q psy9169 270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVK 346 (440)
Q Consensus 270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l~~L~~ll~~~~~~i~~ 346 (440)
.+.. .+.....++..+.+..+.+.+..++-++...|..++..+.+.....+...+..+ +...+..++.++++-+++
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 4444 445567788888999999999999999999999999999988776666666644 577788899999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169 347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410 (440)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~ 410 (440)
.+...|+.|.-..... ..+...+.+..-+..+..|+.++...|+--|..+..-|
T Consensus 228 QSlKLLgelLldr~N~----------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 228 QSLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp HHHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHH----------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence 9999999998653221 11222333333344555566666666655555554433
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.92 E-value=0.0064 Score=59.02 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=157.7
Q ss_pred CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH--HHHHHhcCCHHHHHHhhC---------CCC-HHHHHHHHHHHHH
Q psy9169 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ--TMTVINANAIPKFLQLLS---------SPH-LNLAEQATWALGN 185 (440)
Q Consensus 118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~--~~~i~~~g~i~~L~~lL~---------~~~-~~v~~~a~~~L~n 185 (440)
+...|+.-|-++..++|.-|+.+|..+....... +..-.+..+.-.|+.+|. +.. ..|||.|+.+||.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 4556777778899999999999999986432211 000011122333333331 111 5799999999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDIC 265 (440)
Q Consensus 186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~ 265 (440)
+ ..-+.- ..++..|+..+.... =+++..++-.|.++..-- .. ..++++.++..|.+.|.+|+..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~DLL---~~---Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKEFV---ED---KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGGGC---CC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHHHH---HH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence 9 554432 344555554444433 577777888888882211 11 677899999999999999999999
Q ss_pred HHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChh
Q psy9169 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN 343 (440)
Q Consensus 266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~ 343 (440)
.+|.-++ .++.... ++..+-..|.+.+ ..-....+..|+.|+..... .-.+...+|.|...+.|+-+.
T Consensus 321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence 9999999 2333333 2455555554432 12345566777777764431 111236899999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169 344 IVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408 (440)
Q Consensus 344 i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~ 408 (440)
||..+..+|..+. .... ... ..++++-.++++|.+.+.++..
T Consensus 391 VR~AVL~TL~tfL--~~~~-------------LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EESI-------------DFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHTTTCC--CHHH-------------HHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhhH-------------HHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999998876 1111 111 1355677889999999999886
No 105
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.81 E-value=0.081 Score=57.30 Aligned_cols=152 Identities=13% Similarity=0.212 Sum_probs=92.8
Q ss_pred HHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC---CcHHHHH-HHHHHHHhhhhCCC
Q psy9169 161 IPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLR-NIVWAISNLCRNKN 234 (440)
Q Consensus 161 i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~-~a~~~L~~l~~~~~ 234 (440)
.+.+-..+.+ .+...++.++++++.+++........-.-..+++.|..+.... ++..+++ .++|+++..+..-.
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 5688899999999999865332211111122444555543321 1233333 68999998886531
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh----------cCChHHHHHhccCCChhHHH
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD----------TGVVPRLVELLDSEETTILT 304 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~----------~g~~~~Lv~lL~~~~~~v~~ 304 (440)
. .......+++.++..+.+.++.++..||+++.+++.... ..+.. ..++..+..++...+..-..
T Consensus 533 ~--~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~ 607 (1049)
T 3m1i_C 533 A--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1049)
T ss_dssp H--CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred h--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 1 234567888888889988899999999999999997432 22220 12334444455544444556
Q ss_pred HHHHHHHHhhcCC
Q psy9169 305 AALRTVGNIATGN 317 (440)
Q Consensus 305 ~al~~L~nl~~~~ 317 (440)
....+++.++...
T Consensus 608 ~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 608 TFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC
Confidence 6777888876543
No 106
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.76 E-value=0.077 Score=46.26 Aligned_cols=196 Identities=15% Similarity=0.196 Sum_probs=130.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-H-hCCHHHHHHhc-------cCCC--hH---HHHHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI-E-AGVVPICVELL-------DDEN--PN---TQFEATWAL 141 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~-~g~i~~Lv~lL-------~~~~--~~---i~~~a~~~L 141 (440)
+..++..|.+ ++.+..|+..|.+- ++.-+....++ . -|.+..|++=+ ..+. +. -...|+..|
T Consensus 5 i~qli~~L~~--p~~Re~AL~eLsk~--Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 5 IYQWINELSS--PETRENALLELSKK--RESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHTSS--TTTHHHHHHHHHHH--TTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--chhHHHHHHHHHHh--hhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 4455555553 45688888888764 33323333333 3 37777665433 1111 11 123455555
Q ss_pred HHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhh-CCCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169 142 TNIASGTSEQTMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTP 215 (440)
Q Consensus 142 ~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~-~~~~~~r~~i~~~g~i~~L~~ll~~~~~ 215 (440)
..+|+ +++.+..++++++.-.|-.+|...+ +.+|-.+++++|.+. .++++.-..++..+++|..++.++.++
T Consensus 81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs- 158 (268)
T 2fv2_A 81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS- 158 (268)
T ss_dssp HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC-
T ss_pred HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc-
Confidence 66675 5888999999999888888887544 678899999999998 455777788889999999999999888
Q ss_pred HHHHHHHHHHHHhhhhCCC-------CCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169 216 TTFLRNIVWAISNLCRNKN-------PAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISDGHND 277 (440)
Q Consensus 216 ~~~~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~~~~~ 277 (440)
+--+.-|+..+..+..++. ....+..+..++..++. +....++.+...++++-..|+++...
T Consensus 159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 5566677776666654431 01123334445544443 44567889999999999999987653
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.75 E-value=0.0046 Score=66.40 Aligned_cols=143 Identities=12% Similarity=0.191 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--C--CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--N--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246 (440)
Q Consensus 171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 246 (440)
.+...++.++|++|.|++.-......-.-..+++.|+.++.+ + ....++..++|+++..++.-. ........++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 468999999999999996543321222223467888887753 1 113344577899999887642 1234467778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh----------cCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD----------TGVVPRLVELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~----------~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
..|+..+..+++.+...||+++.++|..-. ..+.. ..++..+...+..-+..-...+..+++.++..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 888888877889999999999999996422 23321 11233333434444566677888899999875
Q ss_pred Ch
Q psy9169 317 ND 318 (440)
Q Consensus 317 ~~ 318 (440)
.+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.69 E-value=0.00066 Score=60.03 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=25.0
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q psy9169 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351 (440)
Q Consensus 289 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~ 351 (440)
+.|..++.++++.|+..+...++ .+.|..+ .++++.|+..|...
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHH
Confidence 45555666666666666665533 2344444 66666777666543
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.54 E-value=0.33 Score=52.17 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=137.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC----c
Q psy9169 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT----S 149 (440)
Q Consensus 75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~----~ 149 (440)
.++.++..+.+++.+.+.+|-..|..+ ... + +....+..+| .+.++.+|..|+.+|.+..... +
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~s--p--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHL-KEH--P--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTS-SCC--S--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HcC--c--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 356677777788888888888888644 222 2 3455566666 5678999999999999986521 2
Q ss_pred HHHHHHHhcCCHHHHHHhhCCC-----CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH
Q psy9169 150 EQTMTVINANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 223 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~ 223 (440)
......+...++..+...-.++ ++.++.+.+.++..++... |.. -...++.++..+..+ .......+
T Consensus 98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~~--~~~~~~~L 170 (1073)
T 3gjx_A 98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRTS--ESLCQNNM 170 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCCC--HHHHHHHH
Confidence 2233344455666666654432 4667788888888887321 110 134566666666422 34555666
Q ss_pred HHHHhhhhCCCCC----CCHH-------HH----hhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy9169 224 WAISNLCRNKNPA----PDFE-------KI----KICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGV 287 (440)
Q Consensus 224 ~~L~~l~~~~~~~----~~~~-------~~----~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~ 287 (440)
++|..|+..-... .... .. ..+++.+..++. ..++++...++.++..+...-+ +..+++.++
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchH
Confidence 7777666541010 0000 11 123344444443 4678888889999998887654 467788898
Q ss_pred hHHH-HHhccCCChhHHHHHHHHHHHhhcC
Q psy9169 288 VPRL-VELLDSEETTILTAALRTVGNIATG 316 (440)
Q Consensus 288 ~~~L-v~lL~~~~~~v~~~al~~L~nl~~~ 316 (440)
++.| ..+|. ++.++..|+.||..|+..
T Consensus 249 l~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 9988 47764 568999999999999874
No 110
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.45 E-value=0.44 Score=50.98 Aligned_cols=212 Identities=11% Similarity=0.097 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCC--ChHHHHHHHHHHHHHhCCCcHH----HHHHHhc
Q psy9169 86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDE--NPNTQFEATWALTNIASGTSEQ----TMTVINA 158 (440)
Q Consensus 86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~--~~~i~~~a~~~L~nla~~~~~~----~~~i~~~ 158 (440)
.|+..|.+|-..|..+ ...+ ++......+| .++ ++.+|.-|+.+|.+....-+.. ....+..
T Consensus 20 sd~~~r~~A~~~L~~~-q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~ 88 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSL-RSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD 88 (980)
T ss_dssp SCHHHHHHHHHHHHHH-HHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence 3788899888888765 3222 2456677777 332 7899999999998775421122 2233334
Q ss_pred CCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC---
Q psy9169 159 NAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--- 233 (440)
Q Consensus 159 g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--- 233 (440)
.++..+...-. .....++.+.+.+|..++... |. .-.+.++.|+.++..+.........+.+|..++..-
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence 45555554211 233668888888888887321 11 123456777777754331123344444555333221
Q ss_pred CCCCCH----------HH-----HhhHHHHHHHhh----cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169 234 NPAPDF----------EK-----IKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 294 (440)
Q Consensus 234 ~~~~~~----------~~-----~~~~~~~L~~ll----~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l 294 (440)
...... .. ...+++....+| ...++.++..++.++......-+ ...+++.++++.+..+
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~ 241 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSF 241 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHH
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHH
Confidence 000110 00 011133333333 34788899999999998887544 3566777889999998
Q ss_pred ccCCChhHHHHHHHHHHHhhcCC
Q psy9169 295 LDSEETTILTAALRTVGNIATGN 317 (440)
Q Consensus 295 L~~~~~~v~~~al~~L~nl~~~~ 317 (440)
|.. +.++..|+.||..++...
T Consensus 242 L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 242 LQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp TTS--HHHHHHHHHHHHHHHHSC
T ss_pred cCC--hHHHHHHHHHHHHHHHcC
Confidence 875 689999999999998743
No 111
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.28 E-value=0.11 Score=45.32 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHHH--------
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ-------- 326 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~~-------- 326 (440)
+......++.||..+..........+-..+.+..|+..|.++++.++..|+..|+-+|..++ .. ...+++
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 45678889999999987666554444445789999999999999999999999998886443 12 222222
Q ss_pred --cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy9169 327 --AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCY 404 (440)
Q Consensus 327 --~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~ 404 (440)
..-+..+++.+.+.+..--+.++..+-|..-.+++..+.= -.++..+..+|..+.+..+....++++..+-.
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R------~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR------VHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH------HHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 2345566666664332223445666666554333322211 14577888999999999998888888765544
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.03 E-value=0.008 Score=53.05 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHH
Q psy9169 385 LEKLEALQHHENETVYQKCYKI 406 (440)
Q Consensus 385 l~~l~~L~~~~~~~v~~~a~~i 406 (440)
.+.|..| ..+++.|+..|..-
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHH
Confidence 4566677 88888888887643
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.01 E-value=2.2 Score=45.93 Aligned_cols=292 Identities=12% Similarity=0.123 Sum_probs=151.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHH-HhccCCChHHHHHHHHHHHHHhCCCc-HHHHHHH--hcCC
Q psy9169 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV-ELLDDENPNTQFEATWALTNIASGTS-EQTMTVI--NANA 160 (440)
Q Consensus 85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~--~~g~ 160 (440)
+.++.+...++.++..+++= .++..+++.++++.++ .+| ++++++..|+.||+.|.+... +....+. =.++
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56777777788888877642 3467888999999884 666 467899999999999986532 2122221 1122
Q ss_pred HHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHhhhCCCCcHHHH
Q psy9169 161 IPKFLQLLS-------------SPHLNLAEQATWALGNIAGDGARARDLLLGL-G-------TMPQILALVQPNTPTTFL 219 (440)
Q Consensus 161 i~~L~~lL~-------------~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g-------~i~~L~~ll~~~~~~~~~ 219 (440)
+..+..++. ..+.+.....+.++..+... ....+... + ++..|+.+-..+ +.++.
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~ 368 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIF 368 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHH
Confidence 222222221 12234444444455444311 11222211 1 233344444444 36666
Q ss_pred HHHHHH----HHhhhhCCC----CC----------CCHH--HHhhHHHH----HHHhhcCCC------------------
Q psy9169 220 RNIVWA----ISNLCRNKN----PA----------PDFE--KIKICLPL----LNQLIHTTD------------------ 257 (440)
Q Consensus 220 ~~a~~~----L~~l~~~~~----~~----------~~~~--~~~~~~~~----L~~ll~~~d------------------ 257 (440)
+.+... ...|....+ .. .... ...+++.. ++.-+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 554433 223332210 01 0111 12233333 333332111
Q ss_pred --H-----HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHH-HHHHHHc
Q psy9169 258 --V-----ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQ-TDCVIQA 327 (440)
Q Consensus 258 --~-----~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~-~~~l~~~ 327 (440)
. ....+++..+.++.. .+.... +++.|-+.+.. .+......++|++|.++..-.+. -..++-
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp- 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV- 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred hcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence 0 123334433333321 222222 24445444443 35788999999999998543321 212222
Q ss_pred CCHHHHHHHhcCC-----ChhHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy9169 328 GGLQKMKKLLSSS-----RVNIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETV 399 (440)
Q Consensus 328 g~l~~L~~ll~~~-----~~~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v 399 (440)
.+++.|+.+..++ .+.++...||+++..+. ..++....+ +.+|....+..++.|
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~v------------------l~~L~~~m~~~~~~v 582 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTV------------------VNKLFEFMHETHDGV 582 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHH------------------HHHHHHHTTCCSTTH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHH------------------HHHHHHHHhcCCHHH
Confidence 3677788777655 23466677899988664 233333322 445555567788999
Q ss_pred HHHHHHHHHhhC
Q psy9169 400 YQKCYKIISMAF 411 (440)
Q Consensus 400 ~~~a~~il~~~~ 411 (440)
+.+|+..+.++-
T Consensus 583 q~aA~~af~~i~ 594 (1073)
T 3gjx_A 583 QDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 114
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.84 E-value=1.8 Score=47.42 Aligned_cols=258 Identities=7% Similarity=0.036 Sum_probs=144.7
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCC----
Q psy9169 76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASG---- 147 (440)
Q Consensus 76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~---- 147 (440)
+..++..+.++ +...+.+|-..|..+-. .+ .....+...| .+.++.+|..|+.+|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHh-Cc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44444444444 67778888888876522 11 1344444444 466789999999999987532
Q ss_pred -CcHHHHHHHhcCCHHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHH
Q psy9169 148 -TSEQTMTVINANAIPKFLQLLSS---PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNI 222 (440)
Q Consensus 148 -~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a 222 (440)
+++.+ ..+...++..+...... ....++.+++.++..|+... +. .-.+.++.|+.++..+ ......+
T Consensus 82 l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~~--~~~~e~~ 153 (1204)
T 3a6p_A 82 MSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQG--ETQTELV 153 (1204)
T ss_dssp SCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHTC--HHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcCC--HHHHHHH
Confidence 23333 33344455555544221 34788899999999888431 21 1245678888887652 4556777
Q ss_pred HHHHHhhhhCC-C-CCCCHHHH-----------hhHHHHHHHhhcC-------------------CCHHHHHHHHHHHHH
Q psy9169 223 VWAISNLCRNK-N-PAPDFEKI-----------KICLPLLNQLIHT-------------------TDVETLSDICWALSY 270 (440)
Q Consensus 223 ~~~L~~l~~~~-~-~~~~~~~~-----------~~~~~~L~~ll~~-------------------~d~~i~~~a~~~L~~ 270 (440)
+.+|..|+..- . ........ ..+++.+..++.. .+..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 77888776431 0 11111111 1344444444432 123466677777776
Q ss_pred hccCChhhHHHHHhcC--ChHHHHHhccCCChhHHHHHHHHHHHhhcCC--hHHHHHHHHc---CCHHHHHHHhc-----
Q psy9169 271 ISDGHNDKIQAVVDTG--VVPRLVELLDSEETTILTAALRTVGNIATGN--DHQTDCVIQA---GGLQKMKKLLS----- 338 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g--~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~l~~~---g~l~~L~~ll~----- 338 (440)
....-+ ...+.+.. +++.+..++. ++.++..|+.||..++... +.....++.. ..+..++..+.
T Consensus 234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 654433 13333433 6777777766 4578999999999999754 2222222211 11233444432
Q ss_pred ---CCChhHHHHHHHHHHHHh
Q psy9169 339 ---SSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 339 ---~~~~~i~~~a~~~L~nl~ 356 (440)
..+.++.+..+..+..++
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 113456777777777765
No 115
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.82 E-value=0.69 Score=42.02 Aligned_cols=187 Identities=14% Similarity=0.132 Sum_probs=108.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC----HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchh
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANA----IPKFLQLLSS-PHLNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~ 193 (440)
+..+..++ .-.++.++-++-+|.-.+.+ +.....+.+.+. +..+...+.+ ..+..+-.++.+++|+... +..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 34555555 33345556666666655543 444444433222 2233444443 3366688899999999987 556
Q ss_pred HHHHHhc--CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHH
Q psy9169 194 RDLLLGL--GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSY 270 (440)
Q Consensus 194 r~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~ 270 (440)
|+.+... .+++.+...+.. .+..++..++.++.|++..............++..+..++. ..|.+....++-+|++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6666532 244445544433 34788888889999988542111233344456666666665 3688999999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169 271 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 309 (440)
Q Consensus 271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~ 309 (440)
+...+.+..+.....|+-..+-++.....+.-...+++.
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 998776654444444655555555554333223334443
No 116
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.77 E-value=0.38 Score=41.56 Aligned_cols=144 Identities=10% Similarity=0.031 Sum_probs=103.9
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhHHH
Q psy9169 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAG-DGARARDL 196 (440)
Q Consensus 119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~ 196 (440)
++....+..++..++|..|+..|+.+ ... ..+++.+.. +-.+++-.|++.+..+++.++. ..++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 44444555888889999999999887 311 235666666 5556779999999999999984 3333
Q ss_pred HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169 197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
..++.+.....+++ ..+++.++..+.--+..... ......++|.|-.+..+++.-|+.++.|.|..++..++
T Consensus 139 ----~~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ----TTHHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 14666777766666 89999998887654433211 12234578888888888999999999999999999998
Q ss_pred hhHHHHHh
Q psy9169 277 DKIQAVVD 284 (440)
Q Consensus 277 ~~~~~l~~ 284 (440)
+.+..+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655544
No 117
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.77 E-value=0.59 Score=44.05 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHHH--------
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ-------- 326 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~~-------- 326 (440)
+......++.||..+..........+-....+..|+..|.++.+.++..|+..|+.+|..+. .. ...+++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence 45778889999999987666554444455789999999999999999999999999987543 21 222332
Q ss_pred --cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169 327 --AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQK 402 (440)
Q Consensus 327 --~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~ 402 (440)
..-+..++..+.+....--..++..+-|..-.+++..+.- -.++..+..+|..+.+..+....++++..+
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R------~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR------VHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 2346677777776432223346666666554332222211 134677888998888888887777766543
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.58 E-value=0.072 Score=48.48 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=98.7
Q ss_pred HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhHHH
Q psy9169 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILT 304 (440)
Q Consensus 226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~~ 304 (440)
|.+|..++....+-......+..+...++..+.++..+.+..|...++...-+...+ ...+|.++..+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence 445555543445555667788889999999999999999999998887654221111 24578887777 577889999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHHh
Q psy9169 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-------RVNIVKEAAWTISNIT 356 (440)
Q Consensus 305 ~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-------~~~i~~~a~~~L~nl~ 356 (440)
.....|+|.+++.....+..+..|+++.|...+... +..-++.||.+++|..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 999999999999988899999999999999877543 3356778999888865
No 119
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.57 E-value=0.32 Score=42.37 Aligned_cols=97 Identities=9% Similarity=0.121 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-----hhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHH
Q psy9169 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMK 334 (440)
Q Consensus 261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-----~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~ 334 (440)
+..|+..+-.++.+++. ...++++++.-.|..+|...+ ..++..++..+|.++. .+++....+++..++|...
T Consensus 73 VcnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 34455555666765554 478899998888888886543 3588899999999985 5566788899999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 335 KLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 335 ~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
+.|+.++.-.|.-|.+++..|..+
T Consensus 152 rime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHhhccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998754
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.54 E-value=0.99 Score=42.50 Aligned_cols=157 Identities=12% Similarity=0.086 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-----------CCChHHHHHHHHHHHH
Q psy9169 76 VPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTN 143 (440)
Q Consensus 76 i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-----------~~~~~i~~~a~~~L~n 143 (440)
....+..|.++- .......+..|+..+...+...++.++ .+++..|+.+|. ..+...+..++.||..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 455677777543 333345566777666555434467777 667888888882 1234788999999999
Q ss_pred HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhC
Q psy9169 144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQ 211 (440)
Q Consensus 144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~ 211 (440)
+..........+-....+..|+..|.++++.++..++..|.-+|.... .. ...++ +..-+..++..+.
T Consensus 147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 985533333344556789999999999999999999999999996543 21 22222 3345777888888
Q ss_pred CCCcHHHHHHHHHHHHhhhhCC
Q psy9169 212 PNTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 212 ~~~~~~~~~~a~~~L~~l~~~~ 233 (440)
+..+.+....++..+-.+..+.
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHHHcCC
Confidence 7655677766666666666554
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.43 E-value=1.1 Score=39.08 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=95.6
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-----------CCChHHHHHHHHHHHHHhC
Q psy9169 79 MIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTNIAS 146 (440)
Q Consensus 79 lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-----------~~~~~i~~~a~~~L~nla~ 146 (440)
.++.|++.. .+.....+..|+..+...+...++.+ ..+++..|+.+|. ..+...+..++.||..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 445555432 22223345555544544433346666 4677888888772 1135678899999999985
Q ss_pred CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhCCCC
Q psy9169 147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNT 214 (440)
Q Consensus 147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~~~~ 214 (440)
........+-..+++..|+..|.++++.++..++..|+-+|..+. .. ...++ +..-+..+++.+....
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 163 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 163 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence 533333344456789999999999999999999999998885433 12 22222 2335666777776555
Q ss_pred cHHHHHHHHHHHHhhhhCC
Q psy9169 215 PTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 215 ~~~~~~~a~~~L~~l~~~~ 233 (440)
+.+....++..+-.+..+.
T Consensus 164 ~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 164 SIALKVGCLQLINALITPA 182 (233)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHCCC
Confidence 5666666655555555554
No 122
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.37 E-value=0.24 Score=45.07 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=90.7
Q ss_pred HHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHH--HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh--hHH
Q psy9169 205 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK--IKICLPLLNQLIHTTDVETLSDICWALSYISDGHND--KIQ 280 (440)
Q Consensus 205 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~--~~~ 280 (440)
.+...+.....+..+--++.++.|+..+. ....... ...+++.+...+.+.+..++..+...+.|++..... ...
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 34444544444556778888999999875 2222221 235666666666677889999999999999843110 001
Q ss_pred HHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169 281 AVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 353 (440)
Q Consensus 281 ~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~ 353 (440)
. ...++..+..++. ..+.+....++-+||+++.++.+..+.....|+...+-.+...+.+.-..++|..|.
T Consensus 230 ~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 230 G--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp H--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 0 0113444555553 347789999999999999987766666666677777777776644433444444443
No 123
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.34 E-value=0.28 Score=42.36 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=97.8
Q ss_pred HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhcc-CChhhHHHHHh
Q psy9169 207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISD-GHNDKIQAVVD 284 (440)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~-~~~~~~~~l~~ 284 (440)
..+..+.. .+++-.|+.+|..+ . . ...+++.+.. +.....-.|+..++.++..++. ..++.
T Consensus 77 ~~L~~~~~-deVR~~Av~lLg~~-~-~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------ 139 (240)
T 3l9t_A 77 FLAYQSDV-YQVRMYAVFLFGYL-S-K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------ 139 (240)
T ss_dssp HHHHTCSS-HHHHHHHHHHHHHT-T-T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred HHHHhCcc-hHHHHHHHHHHHhc-c-C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence 33334444 78888999988877 2 1 2457788877 5566778999999999998885 33322
Q ss_pred cCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh--HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169 285 TGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362 (440)
Q Consensus 285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~ 362 (440)
.++.+...+.+++..++..|+..+.--+.... .... -+++.|-.+..+++.-|++..+|.|..++...|+.
T Consensus 140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 47888899999999999998877543222110 1111 14667777777888899999999999999999887
Q ss_pred HHHHhh
Q psy9169 363 IDHVIQ 368 (440)
Q Consensus 363 ~~~~i~ 368 (440)
+...++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 124
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.22 E-value=1.3 Score=41.69 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVI--------- 325 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~--------- 325 (440)
+......++.||..+..........+-..+++..|+..|.++++.++..++..|+.+|..++ .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 45778889999999987766654455555789999999999999999999999998887443 22 22222
Q ss_pred -HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169 326 -QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQK 402 (440)
Q Consensus 326 -~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~ 402 (440)
+..-+..|+..+......--+.++..+-|..-.+++..+.=+ .++..+..+|..+.|..+....++++..+
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~------~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV------HIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH------HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 223455677777644332234456666665543333222211 34677788888888888877777766544
No 125
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=94.66 E-value=0.023 Score=33.69 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=30.5
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy9169 9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN 49 (440)
Q Consensus 9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~ 49 (440)
.|...||++++..++..|+|+ ..++-|++|-+.++.-|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 478899999887777776665 689999999888776653
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.10 E-value=2.9 Score=45.08 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=104.7
Q ss_pred hHHHHhhhCCC---CcHHHHHHHHHHHHhhh----hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169 203 MPQILALVQPN---TPTTFLRNIVWAISNLC----RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 203 i~~L~~ll~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~ 275 (440)
+..+..++... .++.+...++.+++.|. ...... ....+..+...+.+.+...+.+-+.-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 45555666532 23455666666666554 333222 2223455666666777778888899999999999852
Q ss_pred hhhHHHHHhcCChHHHHHhccC-------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC--CChhHHH
Q psy9169 276 NDKIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--SRVNIVK 346 (440)
Q Consensus 276 ~~~~~~l~~~g~~~~Lv~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~--~~~~i~~ 346 (440)
..++.|.+++.. ....++..|+++|.+++...+...+ +.+..+..+ .++++|.
T Consensus 471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence 236677777642 1346888999999999877665544 557777743 4678999
Q ss_pred HHHHHHHHHhcCChHHHHHHhh---cCcchHHHHHHHHcCcHHHHHHHhcCCcHH
Q psy9169 347 EAAWTISNITAGNSRQIDHVIQ---EGELNQMALLVEESGGLEKLEALQHHENET 398 (440)
Q Consensus 347 ~a~~~L~nl~~~~~~~~~~~i~---~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~ 398 (440)
.|++.|... .-+...++.+.. .........++ ...|..+..+.+|.
T Consensus 533 aA~~~Lm~t-~P~~~~l~~ia~~l~~E~~~QV~sfv-----~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 533 RSCIVFFES-KPSVALVSMVAVRLRREPNLQVASFV-----YSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHT-CCCHHHHHHHHHHHTTCSCHHHHHHH-----HHHHHHHTTCCSGG
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHhhCchHHHHHHH-----HHHHHHHHhcCCcc
Confidence 999888643 223344444443 11122333333 45577777777664
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.03 E-value=4 Score=38.40 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=100.0
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc----C-------CChHHHHHHHHHHHHH
Q psy9169 77 PEMIEGMKSSNP-KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNI 144 (440)
Q Consensus 77 ~~lv~~L~s~~~-~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~----~-------~~~~i~~~a~~~L~nl 144 (440)
...++.|.+... ......+..|+..+...+...++.+. .+++..|+.+|. . .+...+..++.||..|
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 445666665432 22233455555555444333456665 566777777772 1 1356789999999999
Q ss_pred hCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhCC
Q psy9169 145 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQP 212 (440)
Q Consensus 145 a~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~~ 212 (440)
..........+-..+++..|+..|.++++.++..++..|+.+|..+. .. ...++ +..-+..++..+..
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 86543333445556789999999999999999999999988885433 22 22222 33456678888876
Q ss_pred CCcHHHHHHHHHHHHhhhhCC
Q psy9169 213 NTPTTFLRNIVWAISNLCRNK 233 (440)
Q Consensus 213 ~~~~~~~~~a~~~L~~l~~~~ 233 (440)
..+.++...++..+-.+..+.
T Consensus 166 ~~~~e~~~a~m~lIN~lv~~~ 186 (386)
T 2bnx_A 166 GTSIALKVGCLQLINALITPA 186 (386)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHCCC
Confidence 666777776666666666664
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.95 E-value=3.1 Score=36.65 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL 167 (440)
Q Consensus 88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l 167 (440)
.+.+...+...+.++.... +. +. ..+++.++.+..+.+.++|...+..+...+...++. -..+++.|..+
T Consensus 29 ~~~kl~~L~qa~el~~~~d-p~---ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~L 98 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSC-AE---LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTT-GG---GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccC-Hh---HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3688999999998766543 32 11 235777888777788999999999999988544432 23567888999
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q psy9169 168 LSSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 168 L~~~~~~v~~~a~~~L~nl~ 187 (440)
+.++++.+...++.+..++-
T Consensus 99 l~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 99888999988888877764
No 129
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.75 E-value=0.36 Score=46.19 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHH
Q psy9169 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250 (440)
Q Consensus 171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 250 (440)
++...+..|+..|.....+-|...+. ++..+++++...+ ..++..++..|..+|.+. ....+...|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~~-------~i~kiaDvL~ 106 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDED-VSIRRQAIKELPQFATGE-------NLPRVADILT 106 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSS-HHHHHHHHHHGGGGCCTT-------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhhHHHhhhh-------hhhhHHHHHH
Confidence 35778888888888888777777554 4678888888777 889999999999999772 1677888999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169 251 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313 (440)
Q Consensus 251 ~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl 313 (440)
++|..+++.-...+-++|..+...++. +.+..+...+..++..++..++..|..-
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 999999988888888888777765542 2244444444445677888888777543
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.67 E-value=4.6 Score=37.77 Aligned_cols=89 Identities=9% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh
Q psy9169 89 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 168 (440)
Q Consensus 89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL 168 (440)
+.++..+..++.++-... +. .-.++++.++++-.+.+.++|...+..|...+....+.. ..+++.|..+|
T Consensus 40 ~~Kl~~L~q~~EL~l~~d-ps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKD-PT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTC-GG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-HH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 468888888888755432 31 224689999999988899999999999998886443332 34678889999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy9169 169 SSPHLNLAEQATWALGNIA 187 (440)
Q Consensus 169 ~~~~~~v~~~a~~~L~nl~ 187 (440)
.+.++.+...++.+.+++-
T Consensus 110 ~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 9888999998888888764
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.22 E-value=3 Score=44.99 Aligned_cols=168 Identities=12% Similarity=0.121 Sum_probs=108.0
Q ss_pred HHHHHHhccC----CChHHHHHHHHHHHHHhC----CCcHHHHHHHhcCCHHHHH----HhhCCCCHHHHHHHHHHHHHh
Q psy9169 119 VPICVELLDD----ENPNTQFEATWALTNIAS----GTSEQTMTVINANAIPKFL----QLLSSPHLNLAEQATWALGNI 186 (440)
Q Consensus 119 i~~Lv~lL~~----~~~~i~~~a~~~L~nla~----~~~~~~~~i~~~g~i~~L~----~lL~~~~~~v~~~a~~~L~nl 186 (440)
+..+..++.+ .++.++..++.+++.+.. .++.+ ....++.+. ..+...+.+-+..++.+|||+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4455566633 456777777777777753 11111 112244444 444556667778899999998
Q ss_pred hCCCchhHHHHHhcCChHHHHhhhCC------CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh--cCCCH
Q psy9169 187 AGDGARARDLLLGLGTMPQILALVQP------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDV 258 (440)
Q Consensus 187 ~~~~~~~r~~i~~~g~i~~L~~ll~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~d~ 258 (440)
... ..++.|..++.. +....++..|+|+|..+.... -..+-+.+.++. ...++
T Consensus 468 g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--------p~~v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--------PRKVQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp TCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--------HHHHHHHHHHHHHCTTSCH
T ss_pred CCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--------hHHHHHHHHHHhcCCCCCh
Confidence 743 246777777742 223568889999999998543 123455666777 45788
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcCChHH
Q psy9169 259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQ 320 (440)
Q Consensus 259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~ 320 (440)
+++..|+..|.... ++. ..+..+...+.. ++..|.......|.+++......
T Consensus 529 EvRiaA~~~Lm~t~--P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 529 ELRIRSCIVFFESK--PSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHHHHHTC--CCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHC--cCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999885433 221 125667777755 57788888888898888766443
No 132
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.78 E-value=1.8 Score=38.74 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHhccCChhhHHHHH-hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc--CCHHHH
Q psy9169 257 DVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKM 333 (440)
Q Consensus 257 d~~i~~~a~~~L~~l~~~~~~~~~~l~-~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~--g~l~~L 333 (440)
|......++..|..++..-....+.+- +-.++..|+ +.....+.++..|.++|+....++|.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 445667777777777754443322222 223444444 3344566799999999999999999888877663 233333
Q ss_pred HHHh----cCC---ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHH
Q psy9169 334 KKLL----SSS---RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCY 404 (440)
Q Consensus 334 ~~ll----~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~ 404 (440)
+.-| ..+ ...++|.-..+|.-|+..+... ...|++.|..+..-. +++++.++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F------------------~~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL------------------PIYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--------------------CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh------------------hhccHHHHHHHHccCCCCHHHHHHHH
Confidence 3322 221 2345666666666666543211 133556666655555 899999999
Q ss_pred HHHHhhCC
Q psy9169 405 KIISMAFN 412 (440)
Q Consensus 405 ~il~~~~~ 412 (440)
.++..+|.
T Consensus 182 ~li~d~f~ 189 (315)
T 3qml_C 182 ELISKILK 189 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 99999995
No 133
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.46 E-value=10 Score=36.35 Aligned_cols=254 Identities=14% Similarity=0.141 Sum_probs=149.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 155 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i 155 (440)
...++...+ ++......|+..|.+.+..-++ . ...++..++.++.+++..||.+|+..|-.+|.+ +...
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~--l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-- 99 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPE--L----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-- 99 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGG--G----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH--
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChh--h----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh--
Confidence 556666555 4688999999999999876542 1 223588899999999999999999999999976 3333
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC-CC
Q psy9169 156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN-KN 234 (440)
Q Consensus 156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~ 234 (440)
.+...|+++|...++.-....-++|..+....+. +.+..|...+.+++ +.++..++..|..-... ..
T Consensus 100 ---kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~-e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 100 ---RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGE-DIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSC-HHHHHHHHHHHHHHGGGSCT
T ss_pred ---hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccc-hHHHHHHHHHHHHHHhhcch
Confidence 4567899999998866666666666666544332 23444444444444 67777777766543322 22
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHh------ccCCChhHHHHHH
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVEL------LDSEETTILTAAL 307 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g~~~~Lv~l------L~~~~~~v~~~al 307 (440)
.........-++..+.+.|.+-...-..-....|..+-.... ...+.+ ++.+... +...+++.....+
T Consensus 168 ~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI 242 (507)
T 3u0r_A 168 EVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLL 242 (507)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHH
Confidence 223344445566667777766555444445555555543222 222222 2333332 1223445444444
Q ss_pred HHHHHhhc------CChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169 308 RTVGNIAT------GNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG 358 (440)
Q Consensus 308 ~~L~nl~~------~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~ 358 (440)
.|+..... .+......+.+ +++|.+-.+-... .+..+-+...++.-++..
T Consensus 243 ~C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~ 299 (507)
T 3u0r_A 243 QCTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSF 299 (507)
T ss_dssp HHHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccC
Confidence 44443321 23334454444 3666554443322 234677888888887754
No 134
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=91.27 E-value=9.7 Score=35.72 Aligned_cols=248 Identities=12% Similarity=0.121 Sum_probs=125.3
Q ss_pred cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+......++...+..|+.++.++++.=|+..-.+|.+|-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 344445566667888999999999988888888887776544444443331 1223344444332222223455666666
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVET-LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i-~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
+..+-..+.......-+...|+.+-....-.. -.....++......++.....+ +..|++.=-..++.-...-+
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHH
Confidence 66665333333333333444555554443222 2334444444554444432221 22232222112222222233
Q ss_pred HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHH
Q psy9169 308 RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLE 386 (440)
Q Consensus 308 ~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~ 386 (440)
.-|..+... .+...+.+.. .+...+...+.+++..|.+.|.....| +.+-.++.-. .......+ ..
T Consensus 273 ~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN------e~i~~li~~n-~~~IlPii-----~p 339 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISDN-AAKILPIM-----FP 339 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHTT-HHHHHHHH-----HH
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc------HHHHHHHHHh-HHHHHHHH-----HH
Confidence 445555532 2333332322 366777778888887777776654422 1111111100 00011111 33
Q ss_pred HHHH-HhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 387 KLEA-LQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 387 ~l~~-L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
.|.. ...|=|+.|+..|..++..+.+-++
T Consensus 340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 340 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 4444 3556699999999999999876543
No 135
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.67 E-value=12 Score=35.20 Aligned_cols=223 Identities=13% Similarity=0.151 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC-----c
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-----S 149 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~-----~ 149 (440)
+-.|+.++.|.|+..|...-..+.++-..- .....++...+-..|..++ ......-..+.+.+|+.|..|- +
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf--~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 566778888888888877777777664322 1234445444556667766 4444444556777777776553 2
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+++..+ ...|+.+-+.+. ...-.+...++..+...++.....+ +..|++.=-... ..-..-.+.-+..
T Consensus 209 ehk~fl-----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tn-s~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTH-SPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHH-----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSC-HHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCC-cHHHHHHHHHHHH
Confidence 333322 234444544444 2223455555555554444442222 222222211111 2222222333344
Q ss_pred hhhCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhc-----cCCC
Q psy9169 229 LCRNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELL-----DSEE 299 (440)
Q Consensus 229 l~~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL-----~~~~ 299 (440)
+...- +..++. ....++..+..++.+.+-.|...|+.... .+.+-.++.. .++|.+...| .|-+
T Consensus 278 iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn------Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 278 ILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc------cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccC
Confidence 44433 112222 23456777778888888888887765541 1111112211 2344444333 3347
Q ss_pred hhHHHHHHHHHHHhhcCCh
Q psy9169 300 TTILTAALRTVGNIATGND 318 (440)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~ 318 (440)
..++..|..++.-+...++
T Consensus 351 ~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 351 KTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCH
Confidence 7888888888887765543
No 136
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.50 E-value=18 Score=34.58 Aligned_cols=225 Identities=12% Similarity=0.138 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC-----c
Q psy9169 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-----S 149 (440)
Q Consensus 76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~-----~ 149 (440)
+..|+.++.|.|+..|...-..+..+-..-. ....++...+-..+..++ ......-..+.+.+|+.|..|- +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~--~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCT--TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 5678888889999888888788877754432 234455555566677777 5455555668888999887763 3
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+++..+ ...|+.|.+... ...-.+...++..+...++..-..+ +..|++.=-... ..-..-.+.-|..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tn-s~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTH-SPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSC-HHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCC-chHHHHHHHHHHH
Confidence 333332 344555555544 2223345555555554444442222 222222221111 2212222333344
Q ss_pred hhhCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh---cCChHHHHHhcc-----CCC
Q psy9169 229 LCRNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD---TGVVPRLVELLD-----SEE 299 (440)
Q Consensus 229 l~~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~---~g~~~~Lv~lL~-----~~~ 299 (440)
+...- +..++. ....++..+..++.+.+-.|...|+....+ +.+-.++. ..++|.+...|. |-+
T Consensus 311 ile~~-~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~~HWn 383 (449)
T 2npp_B 311 ILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKTHWN 383 (449)
T ss_dssp HHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHHHhcC
Confidence 44333 222222 335677778888889888888887654421 11111111 124566665542 336
Q ss_pred hhHHHHHHHHHHHhhcCChHH
Q psy9169 300 TTILTAALRTVGNIATGNDHQ 320 (440)
Q Consensus 300 ~~v~~~al~~L~nl~~~~~~~ 320 (440)
..++..|..++.-+...++..
T Consensus 384 ~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 384 KTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp TTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHH
Confidence 789999999988877766643
No 137
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.10 E-value=9.7 Score=41.70 Aligned_cols=210 Identities=11% Similarity=0.025 Sum_probs=121.9
Q ss_pred CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcC
Q psy9169 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGD-----GARARDLLLGLG 201 (440)
Q Consensus 129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~r~~i~~~g 201 (440)
.++..|.+|-..|.++-.. ..+...+...| .+.+..+|..|+..|.|.... .++.+..+ ...
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred CChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence 4667788888777776432 12444444444 345688999999999887632 23333333 333
Q ss_pred ChHHHHhhhCCC--CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC-----
Q psy9169 202 TMPQILALVQPN--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG----- 274 (440)
Q Consensus 202 ~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~----- 274 (440)
++..+....... .+..++..++.++..++...-+. ....+++.|+.++.. ++.....++.+|..++..
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 444444432211 34678888899999988664221 135688888888866 455677788888877642
Q ss_pred --ChhhHH----HHHhc--CChHHHHHhccC-------------------CChhHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy9169 275 --HNDKIQ----AVVDT--GVVPRLVELLDS-------------------EETTILTAALRTVGNIATGNDHQTDCVIQA 327 (440)
Q Consensus 275 --~~~~~~----~l~~~--g~~~~Lv~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~ 327 (440)
...+.. .+.+. .+++.+..+|.. .+..+...++.++.+...--+ ...+.+.
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~ 246 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAE 246 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhc
Confidence 111111 11111 223333333322 123466778888876654333 1233343
Q ss_pred C--CHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169 328 G--GLQKMKKLLSSSRVNIVKEAAWTISNITAG 358 (440)
Q Consensus 328 g--~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~ 358 (440)
. +++.+..++. ++.++..|+-+|..|+..
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 3 6777776665 467889999999999864
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.75 E-value=22 Score=33.86 Aligned_cols=243 Identities=12% Similarity=0.126 Sum_probs=121.7
Q ss_pred cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169 149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228 (440)
Q Consensus 149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~ 228 (440)
+......++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+..++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3334555666788899999999999888888888877765433444333321 223344444332222334456667777
Q ss_pred hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHH-HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307 (440)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al 307 (440)
+..+-..+.......-+...|+.|.....-..- .....++..+...++.....+ +..|++.=-..+..-...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHH
Confidence 776653333333233334455555554432222 233344444444444332221 22232222112222222233
Q ss_pred HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH-----HhcCChHHHHHHhhcCcchHHHHHHHH
Q psy9169 308 RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN-----ITAGNSRQIDHVIQEGELNQMALLVEE 381 (440)
Q Consensus 308 ~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n-----l~~~~~~~~~~~i~~~~~~~~~~~l~~ 381 (440)
.-|..+... .+...+.+.. .+...+...+.+++..|.+.|+....| +...+...+-.+ +
T Consensus 306 ~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPi------------i-- 370 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPI------------M-- 370 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH------------H--
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHh------------h--
Confidence 444455432 2333332322 366777778888877777776654432 222221111111 1
Q ss_pred cCcHHHHHH-HhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169 382 SGGLEKLEA-LQHHENETVYQKCYKIISMAFNDSA 415 (440)
Q Consensus 382 ~g~l~~l~~-L~~~~~~~v~~~a~~il~~~~~~~~ 415 (440)
.+.|.. ...|=|+.|+..|..++..+.+-++
T Consensus 371 ---~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 371 ---FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp ---HHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 122322 2445578888888888877765444
No 139
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.69 E-value=20 Score=31.41 Aligned_cols=138 Identities=9% Similarity=0.072 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh
Q psy9169 259 ETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337 (440)
Q Consensus 259 ~i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 337 (440)
+.....+.-...+.-. ++... ..+++.++.+-.+++.+++...+.+|...+...++... .+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4666666666665433 33322 24477778877777889999999999988865554433 3567788888
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 338 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~----~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
.+.++.+.+.+..+..++-. -..+.+...+.. +.....+.+ .-+.|..+..+.|..|+-.|.+.++++-
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~---~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYK---NGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHH---HHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 88888898888887777642 222233322211 122223322 2455667788899999999999999864
No 140
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=81.75 E-value=34 Score=31.92 Aligned_cols=137 Identities=9% Similarity=0.112 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc
Q psy9169 260 TLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 260 i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 338 (440)
.+...+.-+..|.-+ ++. +=..+++.++.+-.+++.+++...+.+|...+....+... .+++.|..++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence 455555555554432 222 1146789999998888899999999999988875554432 35677888888
Q ss_pred CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169 339 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 411 (440)
Q Consensus 339 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~----~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~ 411 (440)
+.++.+.+.+..+..++- +-..+.+...+.. +.....+.+. -+.|..+..+.|..|+-.|.+.++++-
T Consensus 111 d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 888899888888877764 2223333332211 2233333322 355666788899999999999999863
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=79.36 E-value=20 Score=27.78 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=65.0
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
++|.|+..|++.+..+...++..|...- . -+++.+.+++.+.+.. ...|+|..+...-+....
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~---~---------~l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~~~~-- 94 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ---S---------IAMPHILTILQGNDIM---WKYWVIKLMIPYLIYPNK-- 94 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH---H---------HHHHHHHHHHHSSCHH---HHHHHHHHHGGGCCHHHH--
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc---H---------hhHHHHHHHHHcCChH---HHHHHHHHHHHcCCHHHH--
Confidence 4789999999999888888877776531 1 1356677788776655 467888887765433211
Q ss_pred hhcCcchHHHHHHHHcCcHHHHHHHhcCC-----cHHHHHHHHHHHHhhCCC
Q psy9169 367 IQEGELNQMALLVEESGGLEKLEALQHHE-----NETVYQKCYKIISMAFND 413 (440)
Q Consensus 367 i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-----~~~v~~~a~~il~~~~~~ 413 (440)
.. ....|+.+..++ ..++...|..+|++||.+
T Consensus 95 ----------~~-----l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 95 ----------QL-----VKSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ----------HH-----HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ----------HH-----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 11 134466666664 679999999999999863
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=77.80 E-value=3.6 Score=33.42 Aligned_cols=73 Identities=7% Similarity=0.039 Sum_probs=53.1
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHh
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIA 145 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla 145 (440)
...+..|.+.|.+.++.+++.|+..+-.++.........++.....+..|+.++ ...++.++..++..+...+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 355777888888999999999999888777654433344555567788888888 4467788887777666654
No 143
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.55 E-value=9.8 Score=29.84 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc-CChHHHHHHhhcCcchHHHHHHHHc
Q psy9169 305 AALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGELNQMALLVEES 382 (440)
Q Consensus 305 ~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~-~~~~~~~~~i~~~~~~~~~~~l~~~ 382 (440)
..+.=|++++..++. .... +++.|.+-|.+.++.++..|..+|-.|+. |++..++.+-. ..
T Consensus 30 ylm~EIA~~T~~s~~~~~~e-----im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~------------~~ 92 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKE-----FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQR------------NS 92 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH------------TT
T ss_pred HHHHHHHHHHHhcchhHHHH-----HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHH------------hH
Confidence 334445555544432 2222 45778888888889999999999999996 45554433322 11
Q ss_pred CcHHHHHHHhcCC--------cHHHHHHHHHHHHhhCCCCcc
Q psy9169 383 GGLEKLEALQHHE--------NETVYQKCYKIISMAFNDSAE 416 (440)
Q Consensus 383 g~l~~l~~L~~~~--------~~~v~~~a~~il~~~~~~~~~ 416 (440)
..+..+......+ ...|+.+|.++++-+|+++..
T Consensus 93 ~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~ 134 (140)
T 1vdy_A 93 VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENG 134 (140)
T ss_dssp HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCC
Confidence 1122223222222 368999999999999987654
No 144
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=76.83 E-value=40 Score=31.43 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l 229 (440)
......++...+..|+.++.++++.=|+....+|..|-+.-...|..+.. .+-..+.+.+.......-...++..++.+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 33445566677889999999999988888888887776543444443322 23344556655433333445666777777
Q ss_pred hhCCCCCCCHHHHhhHHHHHHHhhcC
Q psy9169 230 CRNKNPAPDFEKIKICLPLLNQLIHT 255 (440)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~L~~ll~~ 255 (440)
..+-..+.......-+...|+.|...
T Consensus 244 Ingfa~PLKeehk~Fl~~vLlPLhk~ 269 (392)
T 2jak_A 244 INGFALPLKEEHKIFLLKVLLPLHKV 269 (392)
T ss_dssp HHTCCSSCCHHHHHHHHHTTGGGGTS
T ss_pred HhccCCCCcHHHHHHHHHHhHhhccC
Confidence 77653333333222234444555444
No 145
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.96 E-value=15 Score=32.89 Aligned_cols=134 Identities=8% Similarity=0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHH
Q psy9169 217 TFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVE 293 (440)
Q Consensus 217 ~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~--g~~~~Lv~ 293 (440)
.....++-.|..++.+-.-...+.. ...++..|+ +....++.+..-+..+|+....+++..+..+.+. ..+..+..
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3455566666666544211111111 123333333 2344567788889999998888888877766653 33444333
Q ss_pred hcc----C---CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHh
Q psy9169 294 LLD----S---EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 356 (440)
Q Consensus 294 lL~----~---~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~ 356 (440)
-|. . ....++..-+.+|--|...+.... ...+..|.+++... ++.++..+.-.++.+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 332 2 233567777888888877653232 24557777777666 7788888887777665
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.18 E-value=4.9 Score=31.99 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=56.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------CChHHHHHHHHHHHHHh
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------ENPNTQFEATWALTNIA 145 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------~~~~i~~~a~~~L~nla 145 (440)
...+..|.+.|++.++.+++.|+..+-.++.....+....+.....+..|+.++.. .++.++..++..+...+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999888765553334566667888889988842 46788888877777665
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.11 E-value=2.9 Score=32.98 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=50.5
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHh
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA 145 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla 145 (440)
...+..|.+.|.+.++.+++.|+..+-.++..........+.....+..|+.++...++.++..++..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4556777778888889999999888877765544222334545566777777775567788877777776654
No 148
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=74.67 E-value=13 Score=29.93 Aligned_cols=94 Identities=11% Similarity=0.158 Sum_probs=63.1
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQK 332 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~ 332 (440)
...|.......|..+..=..+. . .++..|.+-|.+.++.++..|+..|-.++.+. ......+.+..+++.
T Consensus 29 ~~~Dw~~~leicD~I~~~~~~~----k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e 99 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTPNGA----K-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATE 99 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSSSHH----H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCccH----H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 3466677777776665421111 1 23567778888999999999999988888753 334445666667888
Q ss_pred HHHHhcC-CChhHHHHHHHHHHHHh
Q psy9169 333 MKKLLSS-SRVNIVKEAAWTISNIT 356 (440)
Q Consensus 333 L~~ll~~-~~~~i~~~a~~~L~nl~ 356 (440)
|..++.. .++.|+..+.-.+...+
T Consensus 100 l~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 100 VRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Confidence 8888864 45677777776666655
No 149
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=74.12 E-value=19 Score=28.39 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169 319 HQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392 (440)
Q Consensus 319 ~~~~~l~~~g~l~~L~~ll~~------~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~ 392 (440)
.....+++.|++..+..-|.. +...||.....+|.++- -. ...+.+.|.-..+..+.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~----------------~e~Lk~SglGkvv~~l~ 114 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IH----------------KEHLVTSGVGKIVYFYS 114 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC----------------HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CC----------------HHHhhcCCCCcchhhhh
Confidence 356778999999999999873 24589999999999984 22 34567777777777788
Q ss_pred cCC--cHHHHHHHHHHHHhh
Q psy9169 393 HHE--NETVYQKCYKIISMA 410 (440)
Q Consensus 393 ~~~--~~~v~~~a~~il~~~ 410 (440)
.|+ .+++++.|..++++|
T Consensus 115 k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 115 INPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HCTTSCHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHH
Confidence 777 578999999999987
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.01 E-value=9 Score=40.86 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=108.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC---CCcHHHHHHHHHHHH--hhhhCCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP---NTPTTFLRNIVWAIS--NLCRNKN 234 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~--~l~~~~~ 234 (440)
++.-|+.+--+.-.+|+..|-.+|......-+..+..+ +|.+++.|.. ..+.+-.+-|+++|. .+...
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-- 206 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-- 206 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH--
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH--
Confidence 35667777777779999999999999886655554443 6777777764 444556666777655 22211
Q ss_pred CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh------------------------hhHHH---------
Q psy9169 235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN------------------------DKIQA--------- 281 (440)
Q Consensus 235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~------------------------~~~~~--------- 281 (440)
...+......+++.|+.....+.++++.-+-.+...+...-. ..+..
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 123456667888888888777766655444433333222100 00000
Q ss_pred --HHh--cCChHHHHHhc-cCCC--hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169 282 --VVD--TGVVPRLVELL-DSEE--TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354 (440)
Q Consensus 282 --l~~--~g~~~~Lv~lL-~~~~--~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n 354 (440)
..+ .++...|+.++ .... ......+++.|.++....+. .....++..+++.+.+++|.+|+.|..++..
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 000 12333334444 1223 45566666665555533221 1112356678888888999999999998887
Q ss_pred Hhc
Q psy9169 355 ITA 357 (440)
Q Consensus 355 l~~ 357 (440)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 151
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.86 E-value=5.9 Score=31.53 Aligned_cols=75 Identities=7% Similarity=-0.033 Sum_probs=56.4
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------CChHHHHHHHHHHHHHh
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------ENPNTQFEATWALTNIA 145 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------~~~~i~~~a~~~L~nla 145 (440)
....+..|.+.|++.++.+++.|+..+-.++.....+....+.....+..|+.++.. .++.++..++..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999888765553334566667788888888842 56788888888777765
Q ss_pred C
Q psy9169 146 S 146 (440)
Q Consensus 146 ~ 146 (440)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.96 E-value=14 Score=29.04 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQK 332 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~ 332 (440)
..+|.......|..+.. .+.... .++..|.+-|.+.++.++..|+..|-.++.+.. .....+.+..++..
T Consensus 19 ~~~dw~~ileicD~I~~----~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e 89 (140)
T 3ldz_A 19 TAEDWGLILDICDKVGQ----SRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE 89 (140)
T ss_dssp SSCCHHHHHHHHHHHTT----STTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH
T ss_pred CCcCHHHHHHHHHHHHC----CCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH
Confidence 34565666666655432 211111 236677778889999999999988887776443 33444555557777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169 333 MKKLLSSSRVNIVKEAAWTISNITA 357 (440)
Q Consensus 333 L~~ll~~~~~~i~~~a~~~L~nl~~ 357 (440)
|..++...++.|+..+.-.+...+.
T Consensus 90 l~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 90 VSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHH
Confidence 7788776778888888877777663
No 153
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=70.26 E-value=0.47 Score=43.23 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=30.8
Q ss_pred hhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhcccc
Q psy9169 6 AAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNID 51 (440)
Q Consensus 6 ~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~ 51 (440)
.+..|+..||++++..++- +|++...+.-|+||.+.+...|++.
T Consensus 28 a~HPR~sqyK~k~~~~~Q~--~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS--ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC--HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4558999999988655544 4445678888999999998888874
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.41 E-value=4.3 Score=34.93 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHh
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIA 145 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla 145 (440)
....+..|.+.|++.++.+|+.|+..|-.++..-..+...++.....+..|+.++ ...++.++..++..+...+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999988777654423344555566777787777 5567788888877777665
No 155
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=68.19 E-value=20 Score=28.32 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHHH
Q psy9169 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKM 333 (440)
Q Consensus 255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~L 333 (440)
.+|.......|..+..=..+. ..++..|.+-|.+.++.++..|+..|-.++.+. +.....+.+..++..|
T Consensus 16 ~~dw~~~leicD~I~~~~~~~---------k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTDPNGP---------THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp SCCHHHHHHHHHHHHHSSHHH---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCccH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456666666666554322111 123667777788999999999999998888653 4455566667788888
Q ss_pred HHHhcC------CChhHHHHHHHHHHHHhc
Q psy9169 334 KKLLSS------SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 334 ~~ll~~------~~~~i~~~a~~~L~nl~~ 357 (440)
..++.. .++.|+..+...+...+.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 888864 256788887777776653
No 156
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=68.11 E-value=33 Score=27.73 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=60.0
Q ss_pred hHHHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHH
Q psy9169 318 DHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEAL 391 (440)
Q Consensus 318 ~~~~~~l~~~g~l~~L~~ll~~------~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L 391 (440)
......+++.|++..+...|.. +...|+.....+|.++- .+ ...|.+.|.-..+..+
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP-I~----------------~e~Lk~SglGkvV~~l 128 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP-VK----------------TEHLKESGLGRVVIFY 128 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC----------------HHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC-CC----------------HHHHhhCCCCceeeeh
Confidence 3456678999999999998864 24589999999999885 22 2456777776777777
Q ss_pred hcCC--cHHHHHHHHHHHHhhC
Q psy9169 392 QHHE--NETVYQKCYKIISMAF 411 (440)
Q Consensus 392 ~~~~--~~~v~~~a~~il~~~~ 411 (440)
..|+ .++++..|..++++|.
T Consensus 129 ~k~~~et~~nkrla~~Li~~Ws 150 (170)
T 3nfq_A 129 TKSKRVEAQLARLAEKLIAEWT 150 (170)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHT
T ss_pred hcCCcccHHHHHHHHHHHHHHH
Confidence 7777 5789999999999984
No 157
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.34 E-value=20 Score=29.24 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHH
Q psy9169 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKM 333 (440)
Q Consensus 255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L 333 (440)
..|.......|..+..=..+. . .++..|.+-|.+.++.++..|+..|-.++.+.. .....+.+..++..|
T Consensus 28 ~~Dw~~ileicD~I~~~~~~~----k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKELEGP----Q-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp SCCHHHHHHHHHHHHHSTTHH----H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCccH----H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456666666666664432111 1 235677888899999999999999998887643 344556667788889
Q ss_pred HHHhcC------CChhHHHHHHHHHHHHhc
Q psy9169 334 KKLLSS------SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 334 ~~ll~~------~~~~i~~~a~~~L~nl~~ 357 (440)
+.++.. .+..|+..+.-.|...+.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 998863 246788888777777663
No 158
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.67 E-value=7.3 Score=31.82 Aligned_cols=74 Identities=7% Similarity=-0.004 Sum_probs=54.0
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc------CCChHHHHHHHHHHHHHhC
Q psy9169 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD------DENPNTQFEATWALTNIAS 146 (440)
Q Consensus 73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~------~~~~~i~~~a~~~L~nla~ 146 (440)
...+..|.+.|++.++.+++.|+..|-.++.........++.....+..|+.++. ..++.++..++..+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3457778888889999999999999987776544233446666778888888884 2356888888777777653
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.94 E-value=7.6 Score=33.20 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHh
Q psy9169 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIA 145 (440)
Q Consensus 72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla 145 (440)
....+..|.+.|++.++.+++.|+..|-.++..-..+...++.....+..|+.++ ...++.++..++..+...+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456778888889999999999999998877654422334555566777777777 4556777777766665554
No 160
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=60.39 E-value=19 Score=34.02 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=67.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhccC--------CChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELLDD--------ENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL~~--------~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+.+..+..++.+++++.|+++... ....++. ......+++.+.. .+..++..++..+.|++......+
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~--~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNEN--WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTT--THHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred cCCCChhHHHHHHHHHHHhcCCcc--hHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc-
Confidence 345678999999999999986442 2333433 2335566665521 245688999999999986321100
Q ss_pred HHHhcCCHHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCCchh
Q psy9169 154 TVINANAIPKFLQLLS---------SPHLNLAEQATWALGNIAGDGARA 193 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~~ 193 (440)
.+...+..++.++. ..+.+....++-+||+|...++..
T Consensus 348 --~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 348 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp --SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred --chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 01234455666665 246788889999999998644443
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=60.05 E-value=5.4 Score=42.56 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=84.5
Q ss_pred ChHHHHhhhCCCCcHHHHHH-HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhc-----cC
Q psy9169 202 TMPQILALVQPNTPTTFLRN-IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYIS-----DG 274 (440)
Q Consensus 202 ~i~~L~~ll~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~-----~~ 274 (440)
++|.|+.+....++.++... +..++..++... ........++..+..... +.+. .+..++..+..+. .-
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 67777777665554466666 666777777543 223334445555555555 3455 6666655543332 22
Q ss_pred ChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHHHHHHhhcCC-h-HHHHHHHH---cCC-----HHHHHHHhcCCChh
Q psy9169 275 HNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGN-D-HQTDCVIQ---AGG-----LQKMKKLLSSSRVN 343 (440)
Q Consensus 275 ~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~-~-~~~~~l~~---~g~-----l~~L~~ll~~~~~~ 343 (440)
..+.. ..+...++.+|.++. .+|+..|..+|+-+..+. + .....++. ... ...+.+-. +....
T Consensus 837 ~~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~ 910 (997)
T 1vsy_5 837 TEEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDI 910 (997)
T ss_dssp CTTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCH
T ss_pred CHHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHH
Confidence 22221 245788899999999 999999999999997765 4 33332322 111 11111100 00113
Q ss_pred HHHHHHHHHHHHhcC
Q psy9169 344 IVKEAAWTISNITAG 358 (440)
Q Consensus 344 i~~~a~~~L~nl~~~ 358 (440)
.+..|.-.|+.+...
T Consensus 911 ~rH~aVLgL~AlV~a 925 (997)
T 1vsy_5 911 KIHGNVLGLGAIISA 925 (997)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 556678888888864
No 162
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.74 E-value=37 Score=26.81 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=53.3
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhc
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~------~~~~i~~~a~~~L~nl~~ 357 (440)
+..|.+-|.+.++.++..|+..|-.++.+... +...+.+..++..|..++.. .++.|+..+.-.+...+.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66777888899999999999998888864433 44556666788888988863 356888888888877764
No 163
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.46 E-value=7 Score=34.27 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-c---C----CChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-D---D----ENPNTQFEATWALTNIASGTSEQTMT 154 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~---~----~~~~i~~~a~~~L~nla~~~~~~~~~ 154 (440)
+.+.++..++.+++++.|+++... .....+........+++.+ . + .+..++..++..+.|++......+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~-~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNEN-WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTT-THHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred cCCCchhHHHHHHHHHHHcccCCc-hHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 345678899999999999986543 1233333333344455444 1 1 3567899999999999863111000
Q ss_pred HHhcCCHHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCC
Q psy9169 155 VINANAIPKFLQLLSS---------PHLNLAEQATWALGNIAGDG 190 (440)
Q Consensus 155 i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~ 190 (440)
+......++.++.. .+++....++-+||++...+
T Consensus 177 --~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 177 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp --CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred --hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 12334445555542 25778888999999998543
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.45 E-value=20 Score=30.75 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169 159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232 (440)
Q Consensus 159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 232 (440)
.++..|.+-|.+.++.++..|+.+|-.+..+. ..+...+....++..|..++....+..++..++..+...+..
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34667778888888999988888888877543 335666667777888888887656678888888877766654
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.38 E-value=18 Score=30.73 Aligned_cols=72 Identities=8% Similarity=0.107 Sum_probs=52.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 231 (440)
++..|.+-|.+.++.++..|+..|-.+..+. +.++..+....++..|..++.+..+..++..++..+..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4566777788888999999999988888654 44666777777888888887755557777777766655443
No 166
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.17 E-value=66 Score=27.17 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=63.1
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH
Q psy9169 248 LLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 326 (440)
Q Consensus 248 ~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~ 326 (440)
.+-.++.. ++-.+.-..|.+++.+....++. +.+.+.....+++.-++..|+.++ +..........
T Consensus 93 ~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~--- 159 (220)
T 2b6c_A 93 AFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIFALFYGAENFWNRRVALNLQ--LMLKEKTNQDL--- 159 (220)
T ss_dssp HGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHHHHHTTCSSHHHHHHHHHTT--TTCGGGCCHHH---
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHHHHHHcCCCHHHHHHHHHHH--HHHHHCCCHHH---
Confidence 33334433 44455555555566555433322 245677888889888888777644 22211111221
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 327 ~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
.++.+..++.+++.-|++...|+|..++...++.+...
T Consensus 160 --~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 160 --LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp --HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 24455557778888999999999999998887754333
No 167
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.09 E-value=99 Score=26.04 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=85.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGL 200 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~ 200 (440)
+..++.++.-+.+..|+.+|......... ..++.+-.++.. ++-.+....+.+++.+....+..
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------- 124 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------- 124 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG-------
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH-------
Confidence 34444777788899898888876522111 112233344433 55777777667777776433321
Q ss_pred CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280 (440)
Q Consensus 201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~ 280 (440)
..+.+...+.+++ .-+++.++-++...... .. ...+++.+..++.+++.-|+..+.|+|..++..+++...
T Consensus 125 -~~~~i~~W~~s~~-~w~rR~ai~~~l~~~~~----~~---~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 125 -LPTIFALFYGAEN-FWNRRVALNLQLMLKEK----TN---QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp -HHHHHHHHTTCSS-HHHHHHHHHTTTTCGGG----CC---HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHC----CC---HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 2344555555554 66777766644322111 11 134466666688889999999999999999998887665
Q ss_pred HHHh
Q psy9169 281 AVVD 284 (440)
Q Consensus 281 ~l~~ 284 (440)
.++.
T Consensus 196 ~fl~ 199 (220)
T 2b6c_A 196 ELMK 199 (220)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=53.78 E-value=20 Score=33.04 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=65.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh-CCHHHHHHhcc--------CCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169 83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD--------DENPNTQFEATWALTNIASGTSEQTM 153 (440)
Q Consensus 83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~i~~Lv~lL~--------~~~~~i~~~a~~~L~nla~~~~~~~~ 153 (440)
+.+..+..++.+++.+.|+++... ....++.. .....+++.+. ..+..++..++..+.|++......+
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~--~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~- 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNEN--WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN- 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTT--THHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred cCCCChhHHHHHHHHHHHhccCcc--hHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc-
Confidence 346678999999999999986442 23334322 12334444441 1245788999999999986321100
Q ss_pred HHHhcCCHHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCCch
Q psy9169 154 TVINANAIPKFLQLLS---------SPHLNLAEQATWALGNIAGDGAR 192 (440)
Q Consensus 154 ~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~nl~~~~~~ 192 (440)
.+...+..++.++. ..+.+....++-+||+|...++.
T Consensus 285 --~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 285 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp --SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred --chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 01234456666665 24688889999999999854433
No 169
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=52.62 E-value=50 Score=30.78 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=46.2
Q ss_pred HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q psy9169 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIA 187 (440)
Q Consensus 114 i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~ 187 (440)
++...+..|+.++.++|+.-|...-.+|..|-..-...+..+. ..+-..+.+++.... ..-....+.++|.|.
T Consensus 171 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 171 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3445677888888999999998888888888655444444332 234455666665432 222334566666666
No 170
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=51.57 E-value=61 Score=25.45 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=57.1
Q ss_pred hHHHHHhcCChHHHHHhccC------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC--hhHHHHHH
Q psy9169 278 KIQAVVDTGVVPRLVELLDS------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR--VNIVKEAA 349 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~--~~i~~~a~ 349 (440)
....+++.|++..+-..|.- ++..++...+.+|.++- -..+.+.++|+-..++.+-.+++ +.+++.|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 34678889999999888853 45689999999999984 23667888888888888877764 56787777
Q ss_pred HHHHHHh
Q psy9169 350 WTISNIT 356 (440)
Q Consensus 350 ~~L~nl~ 356 (440)
..+...+
T Consensus 129 ~Li~~Ws 135 (145)
T 2xpp_A 129 ALVQKWT 135 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 171
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.53 E-value=90 Score=27.05 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC----CC---CcHHHHHHHHHHHHhhhhCCC-CCCCHHH
Q psy9169 170 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PN---TPTTFLRNIVWAISNLCRNKN-PAPDFEK 241 (440)
Q Consensus 170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~----~~---~~~~~~~~a~~~L~~l~~~~~-~~~~~~~ 241 (440)
+..+..+-.++.+++|+..+....+..+........++..+. +. .+..++..++..+.|++.... .......
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 445778889999999999885545555544322333443332 21 235677788888888885310 1111222
Q ss_pred HhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHhccCCh
Q psy9169 242 IKICLPLLNQLIH-----TTDVETLSDICWALSYISDGHN 276 (440)
Q Consensus 242 ~~~~~~~L~~ll~-----~~d~~i~~~a~~~L~~l~~~~~ 276 (440)
...++..+...+. ..|++....++-+++++...++
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2233333333221 2378899999999999986444
No 172
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=47.35 E-value=1.2e+02 Score=25.85 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=50.7
Q ss_pred ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169 287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366 (440)
Q Consensus 287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~ 366 (440)
..+.+...+.+++.-++..|+..+ +......... ..++.+..++.+++.-|++...|+|..+....++.+...
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 356788888889888888877654 2221111111 134456667788889999999999999999888765444
Q ss_pred h
Q psy9169 367 I 367 (440)
Q Consensus 367 i 367 (440)
+
T Consensus 205 l 205 (232)
T 3jxy_A 205 V 205 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 173
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.89 E-value=68 Score=30.25 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169 134 QFEATWALTNIASGTSEQTMTVINANAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 212 (440)
Q Consensus 134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~ 212 (440)
++-++-+|.-++.+.+.. +.+..++ ..+.+..+..+-.++.+++|+.......+..+........++..+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666666666543321 2233333 33334568888899999999998854344444332234555555432
Q ss_pred C----C---cHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhhc---------CCCHHHHHHHHHHHHHhccCC
Q psy9169 213 N----T---PTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLIH---------TTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 213 ~----~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~---------~~d~~i~~~a~~~L~~l~~~~ 275 (440)
. . +..++..++..+.|++.... .... ..+++.+.+++. ..|++...-++-+|++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 1 35677788888888885310 0111 233344555444 258899999999999999644
Q ss_pred hh
Q psy9169 276 ND 277 (440)
Q Consensus 276 ~~ 277 (440)
+.
T Consensus 392 ~~ 393 (425)
T 3pst_A 392 PT 393 (425)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 174
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=46.21 E-value=29 Score=27.75 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=47.9
Q ss_pred cCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHH-HHHhcc---CCChHHHHHHHHHHHHHh
Q psy9169 73 KMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPI-CVELLD---DENPNTQFEATWALTNIA 145 (440)
Q Consensus 73 ~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~-Lv~lL~---~~~~~i~~~a~~~L~nla 145 (440)
...+..|.+.|+ +.++.+++.|+..+-.++.....+....+.....+.. |+.++. .....++..++..+...+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 345677777787 4788888888888887776554333445555667776 677772 223467777766666554
No 175
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=44.40 E-value=1.1e+02 Score=25.43 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=76.8
Q ss_pred CChHHHHhhhC-----CCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhc
Q psy9169 201 GTMPQILALVQ-----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYIS 272 (440)
Q Consensus 201 g~i~~L~~ll~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~ 272 (440)
..+|.++..+. +-.+.......+.....|..++. -.-......++|.++.++-. ....++..|+..++.++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 35666665554 22357778888888888888873 33334567889988888732 23379999999999998
Q ss_pred cCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc
Q psy9169 273 DGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 338 (440)
Q Consensus 273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 338 (440)
..-..... -++..+...+.+.+.+++ .....-|+..|..+- . + .+..-++|.+-.+++
T Consensus 119 ~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG--~-~----~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 119 DTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS--K-N----VVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--H-H----HHHTHHHHHHHHHHH
T ss_pred HHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH--H-H----HHHHhhhcCHHHHHH
Confidence 54322111 122344566666665553 345555666666542 2 2 223334466655554
No 176
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.36 E-value=1e+02 Score=24.44 Aligned_cols=95 Identities=7% Similarity=0.044 Sum_probs=61.7
Q ss_pred cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHH
Q psy9169 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQ 331 (440)
Q Consensus 254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~ 331 (440)
..+|.......|..+..=. ..- . .++..|.+-|. +.++.++..|+..|-.++.+. +.....+.+..++.
T Consensus 30 ~~~Dw~~~leicD~I~~~~---~~~-k-----~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~ 100 (157)
T 1elk_A 30 QSEDWALNMEICDIINETE---EGP-K-----DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVE 100 (157)
T ss_dssp SSCCHHHHHHHHHHHHHSS---SHH-H-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCC---ccH-H-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHH
Confidence 3466677777777664321 111 1 23567777786 478899999999988888754 44445566667777
Q ss_pred H-HHHHhcC---CChhHHHHHHHHHHHHhc
Q psy9169 332 K-MKKLLSS---SRVNIVKEAAWTISNITA 357 (440)
Q Consensus 332 ~-L~~ll~~---~~~~i~~~a~~~L~nl~~ 357 (440)
. |+.++.. +...|+..+...+...+.
T Consensus 101 e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 101 SVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 7 7787743 234788887777776653
No 177
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=41.21 E-value=2.5e+02 Score=26.95 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169 76 VPEMIEGMKSS------NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 149 (440)
Q Consensus 76 i~~lv~~L~s~------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~ 149 (440)
++.+.+.|.++ |++..+.-+..+... .+.+.+.+-=-+..++..|.++++.+...|+.++. .+
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~------~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s 143 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYLLDVVDKLVPM------ADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NS 143 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHH------SCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TC
T ss_pred HHHHHHHHcCCccccccCHHHHHHHHHHHHhc------CCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----cc
Q ss_pred HHHHHHHhcCCHHHHHHhhCCCC--HH-HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169 150 EQTMTVINANAIPKFLQLLSSPH--LN-LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 226 (440)
Q Consensus 150 ~~~~~i~~~g~i~~L~~lL~~~~--~~-v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L 226 (440)
.-+..+...+++..|+.++.+++ .. +....=.++..++.+ .-.|..+.+... +++.-++++.++.+.......+
T Consensus 144 ~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~nnl--~lL~~vK~~~~~i~~sRLLdll 220 (500)
T 3vld_A 144 QPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDNNL--PYLVSVKGRMETVSFVRLIDFL 220 (500)
T ss_dssp SSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTH--HHHHHHHHHCCHHHHHHHHHHH
T ss_pred CchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHHhH--HHHHHHhcCCCceeHHHHHHHH
Q ss_pred HhhhhC
Q psy9169 227 SNLCRN 232 (440)
Q Consensus 227 ~~l~~~ 232 (440)
.-+...
T Consensus 221 ~il~~~ 226 (500)
T 3vld_A 221 TIEFQF 226 (500)
T ss_dssp HHHHTT
T ss_pred HHHhcc
No 178
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=41.15 E-value=1.2e+02 Score=24.57 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=58.6
Q ss_pred hHHHHHhcCChHHHHHhccC------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC--hhHHHHHH
Q psy9169 278 KIQAVVDTGVVPRLVELLDS------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR--VNIVKEAA 349 (440)
Q Consensus 278 ~~~~l~~~g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~--~~i~~~a~ 349 (440)
....+++.|++..+-..|.- ++..++...+.+|.++- -..+.+.++|+=..++-+..++. +.+++.|-
T Consensus 68 L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~ 143 (170)
T 3nfq_A 68 LADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLAE 143 (170)
T ss_dssp GHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHHH
Confidence 44678889999999888853 45689999999999884 23567888888888777777764 57888888
Q ss_pred HHHHHHhc
Q psy9169 350 WTISNITA 357 (440)
Q Consensus 350 ~~L~nl~~ 357 (440)
..+...+.
T Consensus 144 ~Li~~WsR 151 (170)
T 3nfq_A 144 KLIAEWTR 151 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 88887764
No 179
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.42 E-value=72 Score=29.38 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhh--
Q psy9169 134 QFEATWALTNIASGTSEQTMTVINANAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV-- 210 (440)
Q Consensus 134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll-- 210 (440)
++-++-+|.-++.+.+. .+.+..++ ..+.+..+..+-.++.+++|+.......+..+........++..+
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55566777766654332 12333333 233345688888999999999988543444443221223333333
Q ss_pred --CCCC---cHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhhc---------CCCHHHHHHHHHHHHHhccCC
Q psy9169 211 --QPNT---PTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLIH---------TTDVETLSDICWALSYISDGH 275 (440)
Q Consensus 211 --~~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll~---------~~d~~i~~~a~~~L~~l~~~~ 275 (440)
.... +..++..++..+.|++.... .... ..+.+.+.+++. ..|++....++-+|++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2221 35677788888888885310 0111 233444555554 358899999999999999644
Q ss_pred h
Q psy9169 276 N 276 (440)
Q Consensus 276 ~ 276 (440)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=36.54 E-value=86 Score=26.78 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=53.6
Q ss_pred hHHHHHhccCCChhHHHHHHH----HHHHhhcC--ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169 288 VPRLVELLDSEETTILTAALR----TVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 361 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~----~L~nl~~~--~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~ 361 (440)
.+.+...+.+++.-++..|+. .++.+... ++..... +++.+...+.+++.-+++.+.|+|..+....++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~-----~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISD-----MLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHH-----HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHH-----HHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 455677778888888888877 54552211 2223332 355666688888999999999999999988887
Q ss_pred HHHHHhh
Q psy9169 362 QIDHVIQ 368 (440)
Q Consensus 362 ~~~~~i~ 368 (440)
.....++
T Consensus 185 ~~~~al~ 191 (235)
T 1t06_A 185 LHEKAVE 191 (235)
T ss_dssp GHHHHHH
T ss_pred HHHHHHH
Confidence 7666665
No 181
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=34.07 E-value=2.1e+02 Score=24.12 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhCC-CcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHH-HHHHHhhCCCchhHHHHH
Q psy9169 122 CVELLDDENPNTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLSS-PHLNLAEQAT-WALGNIAGDGARARDLLL 198 (440)
Q Consensus 122 Lv~lL~~~~~~i~~~a~~~L~nla~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~-~~L~nl~~~~~~~r~~i~ 198 (440)
+-.+..++.-+.|..|+..+...... ++ ..++.+-.++.. ++..+....+ .+++.+....+.
T Consensus 66 ~~~L~~~~~~E~r~~ai~~l~~~~k~~~~---------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~------ 130 (232)
T 3jxy_A 66 IRELWDLPEREFQAAALDIMQKYKKHINE---------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE------ 130 (232)
T ss_dssp HHHHHTSSBHHHHHHHHHHHHHTGGGCCG---------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG------
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH------
Confidence 33444777778888888887654221 12 223344444443 4566666543 455555533332
Q ss_pred hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169 199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278 (440)
Q Consensus 199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~ 278 (440)
...+.+...+.+++ .-+++.++-.+...... .+ ....++.+..++.+++.-++..+.|+|..++..+++.
T Consensus 131 --~~~~~l~~W~~s~~-~w~rR~ai~~~l~~~~~----~d---~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 131 --LISAYIPKWIASDN-IWLQRAAILFQLKYKQK----MD---EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp --GGGGTHHHHHHSSC-HHHHHHHHHTTTTCGGG----CC---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred --HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhC----CC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 12344555555555 66667665544222111 11 1245566777888999999999999999999988877
Q ss_pred HHHHHhc
Q psy9169 279 IQAVVDT 285 (440)
Q Consensus 279 ~~~l~~~ 285 (440)
...+++.
T Consensus 201 v~~fl~~ 207 (232)
T 3jxy_A 201 VWEYVQN 207 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 182
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.80 E-value=2e+02 Score=22.36 Aligned_cols=69 Identities=6% Similarity=-0.091 Sum_probs=48.5
Q ss_pred hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169 288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356 (440)
Q Consensus 288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~ 356 (440)
+..+.+.+....+.-+.+++..+-.++.+...........++.+.+.+.....++..+......+.-.-
T Consensus 45 v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 45 VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 555566666677888899999988888643333345666788888888887777777777666665554
No 183
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=24.16 E-value=62 Score=23.71 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=32.1
Q ss_pred HHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhCCC
Q psy9169 376 ALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFND 413 (440)
Q Consensus 376 ~~~l~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~~~~ 413 (440)
...|.+.+.-..+..|..| ++++|...|..++.+|-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 5678888887888888887 8999999999999998543
No 184
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.60 E-value=73 Score=19.44 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy9169 23 EMRRKRCEMNVELRKAHKD 41 (440)
Q Consensus 23 ~~r~~R~~~~~~lRk~kr~ 41 (440)
+.|++.++..-.|||.|+.
T Consensus 11 ~~Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578888888899998875
No 185
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.32 E-value=6.3e+02 Score=25.99 Aligned_cols=113 Identities=8% Similarity=-0.025 Sum_probs=69.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--CCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169 160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--NTPTTFLRNIVWAISNLCRNKNPAP 237 (440)
Q Consensus 160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~~L~~l~~~~~~~~ 237 (440)
..|.+..-+.+.+..+...+..+|.++|.-.|.+++.++ .+++..+..-|.. -..+--...++.+|..+++.-....
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 456666667788899999999999999987675545443 2344444455544 3334455566667776664321111
Q ss_pred C-HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169 238 D-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273 (440)
Q Consensus 238 ~-~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~ 273 (440)
. ......++..++.-+..+|+.-...++..+..++.
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 1 11334555556666677888777777777766653
No 186
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.86 E-value=1.6e+02 Score=24.34 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=67.0
Q ss_pred hhHHHHHHHhhc------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC---ChhHHHHHHHHHHHh
Q psy9169 243 KICLPLLNQLIH------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNI 313 (440)
Q Consensus 243 ~~~~~~L~~ll~------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~---~~~v~~~al~~L~nl 313 (440)
..++|.++.++. -.|.......+..+..|..++.-.++..+ +.++|.++.++-.. ...+|..|...++.|
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 346666665552 24677777777777777766553222222 23577777776332 227999999999999
Q ss_pred hcCC----hHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHh
Q psy9169 314 ATGN----DHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 356 (440)
Q Consensus 314 ~~~~----~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~ 356 (440)
+... +.... .+...+.+.+.++ ......-|.+.|..+.
T Consensus 118 ~~~~~~~y~~L~~-----RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 118 YDTYSRSYKTLAP-----RVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHTTTSTTHHH-----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHhCccCchHHH-----HHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 8631 22222 3445566666554 3467778888888874
Done!