RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9169
(440 letters)
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 363 bits (934), Expect = e-121
Identities = 178/383 (46%), Positives = 242/383 (63%), Gaps = 10/383 (2%)
Query: 1 MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEE 59
+ + R+ +FK G+ S DE+RR+R E VELRK +++ L KRRN+ + E E
Sbjct: 1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAES 60
Query: 60 NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVV 119
+ +E +P++ + + S + + ++ A RK+LSKE PPI +I+AGVV
Sbjct: 61 SFIPME----QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVV 116
Query: 120 PICVELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
P VE +D+ + QFEA WALTNIASGT++QT V++A A+P F+QLLSS ++ EQ
Sbjct: 117 PRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQ 176
Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT-TFLRNIVWAISNLCRNKNPAP 237
A WALGNIAGD RD +L G + +L L+ + + LRN W +SNLCR KNP P
Sbjct: 177 AVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236
Query: 238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 297
D+ I LP+L +LI++ D E L D CWA+SY+SDG N+KIQAV+D G+ RLVELL
Sbjct: 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296
Query: 298 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
E I T ALR+VGNI TG+D QT +I G L+ + LLSS + NI KEA WTISNITA
Sbjct: 297 ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356
Query: 358 GNSRQIDHVIQEGELNQMALLVE 380
GN+ QI VI + N + L+
Sbjct: 357 GNTEQIQAVI---DANLIPPLIH 376
Score = 78.4 bits (193), Expect = 2e-15
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292
+ P ++ LP L Q + + D+E L + +S + IQ V+D GVVPR V
Sbjct: 61 SFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFV 120
Query: 293 ELLDSEETTILT-AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351
E +D + +L A + NIA+G QT V+ AG + +LLSS+ ++ ++A W
Sbjct: 121 EFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWA 180
Query: 352 ISNITAGNSRQIDHVIQEGELNQMALLVEES 382
+ NI + D+V+Q G L + L+ S
Sbjct: 181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 111 bits (280), Expect = 8e-30
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
+ +I+AG +P V LL + N Q EA WAL+N+++G ++ V+ A +P +QLL S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230
+ + A WAL N+A + ++L G +P+++ L+ + +N A+SNL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119
Query: 231 R 231
Sbjct: 120 S 120
Score = 110 bits (277), Expect = 3e-29
Identities = 46/113 (40%), Positives = 69/113 (61%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP L L+ ++D + WALS +S G+ND IQAVV+ G +P LV+LL SE+ ++
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
AAL + N+A G + V++AGG+ K+ LL SS +I K A +SN+ +
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 92.0 bits (229), Expect = 1e-22
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
+AV+ G +P LV LL S + + A + N++ GN+ V++AGGL + +LL S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 340 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETV 399
+VK A W + N+ AG L+V E+GG+ KL L NE +
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDN-------------KLIVLEAGGVPKLVNLLDSSNEDI 107
Query: 400 YQKCYKIIS 408
+ +S
Sbjct: 108 QKNATGALS 116
Score = 82.7 bits (205), Expect = 3e-19
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT 133
+P ++ + SS+ ++ A + LS + I ++EAG +P V+LL E+
Sbjct: 7 GGLPALVSLLSSSDENVQREAAWALSN-LSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65
Query: 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
A WAL N+A+G + + V+ A +PK + LL S + ++ + AT AL N+A
Sbjct: 66 VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
Score = 39.2 bits (92), Expect = 7e-04
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
++EAG VP V LLD N + Q AT AL+N+AS
Sbjct: 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain. This family
consists of the importin alpha (karyopherin alpha),
importin beta (karyopherin beta) binding domain. The
domain mediates formation of the importin alpha beta
complex; required for classical NLS import of proteins
into the nucleus, through the nuclear pore complex and
across the nuclear envelope. Also in the alignment is
the NLS of importin alpha which overlaps with the IBB
domain.
Length = 97
Score = 76.3 bits (188), Expect = 4e-17
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-DQLDEIEEENVTVIEPTC 68
R+ S+KN G+ +EMRR+R E+ VELRK +++QL KRRN+ ++ E + +
Sbjct: 9 RRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSD 68
Query: 69 MSPIKMTVPEMIEGMKSSNP 88
+ + +P M++G+ S +P
Sbjct: 69 ADQLSLELPVMVQGVNSDDP 88
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 54.0 bits (131), Expect = 5e-10
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
+ E VI A A+P +QLLSSP + E+A WAL N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
Score = 52.5 bits (127), Expect = 2e-09
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 108 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
+IEAG VP V+LL + Q EA WAL+N+A+
Sbjct: 3 ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 48.2 bits (116), Expect = 7e-08
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
+ VI+AG + + +LLSS + +EAAW +SN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ QAV++ G VP LV+LL S + + A + N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISD 273
+P L QL+ + D E + WALS ++
Sbjct: 13 AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats bind
alpha-catenin and N-cadherin.
Length = 41
Score = 52.4 bits (127), Expect = 2e-09
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
E V++A +P ++LL S + ++A WAL N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Score = 47.4 bits (114), Expect = 1e-07
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 106 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
+++AG +P VELL E+ EA WAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 45.9 bits (110), Expect = 4e-07
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
+D V+ AGGL + +LL S +VKEAAW +SN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 45.1 bits (108), Expect = 8e-07
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
++ QAVVD G +P LVELL SE+ ++ A + N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Score = 31.2 bits (72), Expect = 0.062
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISD 273
LP L +L+ + D E + + WALS +S
Sbjct: 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 41.9 bits (99), Expect = 3e-05
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
++ L+EA LL D +P + A AL + + A+P L+LL
Sbjct: 1 LEALLEA--------LLSDPDPEVRAAAARALGELG-----------DPEALPALLELLK 41
Query: 170 SPHLNLAEQATWALGNIAGDGARARDLLLGL 200
P + A ALG + A LL L
Sbjct: 42 DPDPEVRRAAAEALGKLGDP--EALPALLEL 70
Score = 35.4 bits (82), Expect = 0.006
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 24/102 (23%)
Query: 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTN 143
+P++R A R+ ++ E +P +ELL D +P + A AL
Sbjct: 10 SDPDPEVRAAAARALGELGDPE------------ALPALLELLKDPDPEVRRAAAEALGK 57
Query: 144 IASGTSEQTMTVINANAIPKFLQLL-SSPHLNLAEQATWALG 184
+ A+P L+LL + A AL
Sbjct: 58 LGD-----------PEALPALLELLQDDDDAVVRAAAASALA 88
Score = 35.4 bits (82), Expect = 0.007
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
LL L+ D E + AL + D +P L+ELL + + AA
Sbjct: 3 ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51
Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
+G + L + +LL +V+ AA
Sbjct: 52 AEALGKLGDPEA-----------LPALLELLQDDDDAVVRAAA 83
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 40.9 bits (96), Expect = 4e-05
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
+ A AL +A G E + +P L LL + E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPE-LLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 30.5 bits (69), Expect = 0.19
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 265 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
AL ++ G + ++ V ++P L+ LL ++ + AA +G I
Sbjct: 8 ALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 28.2 bits (63), Expect = 1.0
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355
AA +G +A G + L + LL + + AAW + I
Sbjct: 6 AAALALGALAGGGPELLRPAVPEL-LPALLPLLKDDDDEVREAAAWALGRI 55
Score = 26.3 bits (58), Expect = 4.9
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--NTPTTFLR-NIVWAISNL 229
E A ALG +AG G + P++L + P +R WA+ +
Sbjct: 5 EAAALALGALAGGGPELLRPAV-----PELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 38.2 bits (89), Expect = 0.010
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH- 172
+EAG V I V+LL N + Q A L + V++A A+ + L+LL +
Sbjct: 186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE 245
Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQ-ILALVQP 212
+++ +A AL ++ A+ + G +P I A V P
Sbjct: 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAP 286
Score = 35.1 bits (81), Expect = 0.082
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT 138
+I+ + SS + + A S + R + L ++ C++LL + ++
Sbjct: 614 LIQLLSSSKEETQEKAA-SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA 672
Query: 139 WALTNIASGTSE-QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 197
AL ++ E + ++ +AI ++L S + +AEQA AL N+ D A + L
Sbjct: 673 RALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732
Score = 33.2 bits (76), Expect = 0.34
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 26/194 (13%)
Query: 203 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI----CLPLLNQLIHTTDV 258
MP +++L++ T + N + LC+ ++ ++K+ C+P L L+ +
Sbjct: 60 MPLLVSLLRSGTLGAKV-NAAAVLGVLCKEEDL-----RVKVLLGGCIPPLLSLLKSGSA 113
Query: 259 ETLSDICWALSYISDGHND-----KIQAVVDTGVVPRLVELLDSEETT------ILTAAL 307
E A+ +S G KI GVVP L + L +LT AL
Sbjct: 114 EAQKAAAEAIYAVSSGGLSDHVGSKI--FSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171
Query: 308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
R N+ D ++AGG+ + KLLSS + AA ++ + I V+
Sbjct: 172 R---NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVL 228
Query: 368 QEGELNQMALLVEE 381
G + Q+ L+ +
Sbjct: 229 DAGAVKQLLKLLGQ 242
Score = 32.4 bits (74), Expect = 0.55
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 98 ARKMLSKERHPPIDELIEAGVVPICVELLDDENP-NTQFEATWALTNIASGTSEQTMTVI 156
AR M++ E I ++++AG V ++LL N + + EA AL ++S + E +
Sbjct: 214 ARLMMAFES--SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIA 271
Query: 157 NANAIPKFLQLLSSPHLN---------LAEQATWALGNIAG 188
+A IP + +P L E A AL NI G
Sbjct: 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312
Score = 28.5 bits (64), Expect = 9.2
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 291 LVELLD---SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 347
LV LL+ +EE ++ A+ + N+ + V +AGG+Q +++LL SS + +
Sbjct: 1780 LVSLLEDQPTEEMKMV--AICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQ 1837
Query: 348 AAWTISNITAGNSRQIDHVIQE 369
AA I + + +H IQE
Sbjct: 1838 AALLIKLLFS------NHTIQE 1853
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 37.2 bits (86), Expect = 0.014
Identities = 51/281 (18%), Positives = 91/281 (32%), Gaps = 55/281 (19%)
Query: 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 177
++LL+DE+ + A AL + S A+P +LLS + +
Sbjct: 44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRD 92
Query: 178 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237
A ALG + GD L+ L A+ L ++
Sbjct: 93 AAADALGEL-GDPEAVPPLVELLENDENEGV----------RAAAARALGKL-GDERALD 140
Query: 238 DFEKIKICLPLLNQLIHTTDVETLSDICW------ALSYISDGHNDKIQAVVDTGVVPRL 291
L L + L A + G + I L
Sbjct: 141 PL------LEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPL---------L 185
Query: 292 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351
+ELL+ E+ + AA +G + + N D +++A LS + + K A
Sbjct: 186 IELLEDEDADVRRAAASALGQLGSENVEAADLLVKA---------LSDESLEVRKAALLA 236
Query: 352 ISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392
+ I G+ +D + + E + L + + L L+ +
Sbjct: 237 LGEI--GDEEAVDALAKALEDEDVILALLAAAALGALDLAE 275
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 34.1 bits (79), Expect = 0.14
Identities = 49/312 (15%), Positives = 94/312 (30%), Gaps = 89/312 (28%)
Query: 73 KMTVPEMIE--------GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
+ VPE+ + +P +R A + K+ K+ +L+ +VP E
Sbjct: 104 CIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKD-----PDLVRDFLVPELKE 158
Query: 125 LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG 184
LL D++P A L I + + K L LL
Sbjct: 159 LLSDKDPGVVSAAVALLYEIRK---------NDRLYLNKLLPLLV--------------- 194
Query: 185 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 244
R L L L + I+ ++ P ++
Sbjct: 195 ---------RRLCNLLTVCNPWLQVK-----------ILRLLTRYAPQDPREPK----EL 230
Query: 245 CLPLLNQLIHTTD------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
+LN L ++ + V+T+ + D + I V L LL S
Sbjct: 231 LEDILNLLQNSNNAVLYEAVKTIIHL--------DPEPELIVL-----AVNALGRLLSSP 277
Query: 299 ETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
+ + ALR + I + + + L + ++I A + +
Sbjct: 278 DENLRYVALRNLNKILEKHPPAVQHLDL------IIFCLKTDDDISIRLRALDLLYKL-- 329
Query: 358 GNSRQIDHVIQE 369
+ + +++E
Sbjct: 330 VDESNVKEIVKE 341
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 30.2 bits (69), Expect = 0.15
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 118 VVPICVELLDDENPNTQFEATWALTNIAS 146
++P+ +ELL+D +P + A AL +A
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALAE 29
Score = 26.7 bits (60), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 161 IPKFLQLLSSPHLNLAEQATWALGNIA 187
+P L+LL+ P + E A ALG +A
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALA 28
>gnl|CDD|177477 PHA02695, PHA02695, hypothetical protein; Provisional.
Length = 725
Score = 31.1 bits (70), Expect = 1.3
Identities = 59/271 (21%), Positives = 95/271 (35%), Gaps = 67/271 (24%)
Query: 78 EMIEGMKSSNPKMR--MIATRSA-----RKMLSKERHPPIDELIEAGVVPICVELLDDEN 130
EM+E + + P+M + TR ++ML+ R PP++ + A VE+L
Sbjct: 152 EMMEDIVEARPEMASALYTTRPLDLGFLKRMLADHRIPPVNAGLAAATPADAVEML---- 207
Query: 131 PNTQFEATWALTNIASGTSEQTMT--VINANAIPKFLQLLSSPHLNLAE-------QATW 181
Q + + G + + A A+ + +L+ AE T
Sbjct: 208 --AQMRGVYDVRRTLDGLRHSVLCSETVKAFALERIRAGQVQEYLHYAEDYLRDRVSDTG 265
Query: 182 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK 241
A G I D A L + + + P F VW K F
Sbjct: 266 AFGPIFVDAAT----YLNVDNLSHAELSAIADFPGKFDATFVW-------RKALEGGFGD 314
Query: 242 IKICLPLLNQLIHTTDVETLS-DICWALSYISDGHNDKIQAVVDTGV------------- 287
+ L +L+ DV+ ++ D+C + + GH AV D V
Sbjct: 315 V------LGKLLRLADVDAVTEDVC--VGIVESGHR---VAVTDMCVHTTRVAEACVRQN 363
Query: 288 VPRLVELLDSEETTILTAALRTVGNIATGND 318
P +V+ LD T LRT+ +A G D
Sbjct: 364 FPDVVDFLD-------TVPLRTL--LAVGAD 385
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 29.9 bits (67), Expect = 3.2
Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 26/135 (19%)
Query: 137 ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD- 195
A A ++ G E +T I A+P +S L + W G IA A
Sbjct: 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISP 445
Query: 196 ----------LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK---I 242
L+GL P N W NL + A +
Sbjct: 446 CGHLVLEVSASLIGLMDCPFRSI------------NCSWRKENLVDHIAKAVREVESFLA 493
Query: 243 KICLPLLNQLIHTTD 257
K L +LN L+ T+
Sbjct: 494 KFYLAILNALVKGTE 508
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 29.4 bits (66), Expect = 4.0
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 22/162 (13%)
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
L L H + + + LS+ + + G++P+LV LLD++
Sbjct: 332 LLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNG----GLLPKLVSLLDND--NHHGI 385
Query: 306 ALRTVGNIATGND-----HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 360
AL + +++ + TDC+ MK +L + + E N+ N
Sbjct: 386 ALCVLYHLSCDDKAKSMFAYTDCIPML-----MKMVLEGTGERVDLELIALCINLAL-NK 439
Query: 361 RQIDHVIQEGE----LNQMALLVEESGGLEKLEALQHHENET 398
R +I EG+ L + AL + ++ + + HE T
Sbjct: 440 RNA-QLICEGQGLDLLMERALKFRDPLLMKMIRNISQHEGPT 480
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 29.4 bits (66), Expect = 4.3
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 17 AGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTV 76
K FDE RR+ + EL++ H D ++++QL+E+ V + + ++
Sbjct: 308 EVKEFDEARREMIRILKELKQKHPD------KDLEQLEEMANYQVLSRQQKSRAFYRIQA 361
Query: 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERH 107
++ G + ++ A +ARK +S
Sbjct: 362 TRLMTG---AGNILKKHAADAARKAVSMHEV 389
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase
subunit H (Vma13p); activation component of the
peripheral V1 complex of V-ATPase, a heteromultimeric
enzyme which uses ATP to actively transport protons
into organelles and extracellular compartments. The
topology is that of a superhelical spiral, in part the
geometry is similar to superhelices composed of
armadillo repeat motifs, as found in importins for
example.
Length = 429
Score = 29.3 bits (66), Expect = 4.8
Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 49/212 (23%)
Query: 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL-NQ 251
A ++L L + + +++ +T +R ++ NL K L ++ +
Sbjct: 220 AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI--SKRVDREVKKTAALQMVQCK 277
Query: 252 LIHTTDVETLS-------DICWALSYISDGHNDKIQ---------AVVDTG--------- 286
++ T +++L D+ L ++++ + +Q + + +G
Sbjct: 278 VLKT--LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK 335
Query: 287 ------------------VVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQA 327
++ L+ LL+ S + IL A +G D V Q
Sbjct: 336 SEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL 395
Query: 328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
GG Q++ +LL+ N+ EA + + N
Sbjct: 396 GGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427
>gnl|CDD|143386 cd00141, NT_POLXc, Nucleotidyltransferase (NT) domain of family X
DNA Polymerases. X family polymerases fill in short
gaps during DNA repair. They are relatively inaccurate
enzymes and play roles in base excision repair, in
non-homologous end joining (NHEJ) which acts mainly to
repair damage due to ionizing radiation, and in V(D)J
recombination. This family includes eukaryotic Pol beta,
Pol lambda, Pol mu, and terminal deoxyribonucleotidyl
transferase (TdT). Pol beta and Pol lambda are primarily
DNA template-dependent polymerases. TdT is a DNA
template-independent polymerase. Pol mu has both
template dependent and template independent activities.
This subgroup belongs to the Pol beta-like NT
superfamily. In the majority of enzymes in this
superfamily, two carboxylates, Dx[D/E], together with a
third more distal carboxylate, coordinate two divalent
metal cations involved in a two-metal ion mechanism of
nucleotide addition. These three carboxylate residues
are fairly well conserved in this family.
Length = 307
Score = 28.7 bits (65), Expect = 6.0
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL 303
+E+L + L I +KI+ +++TG + +L EL + +L
Sbjct: 37 LPEPIESLEEAK-KLPGIGKKIAEKIEEILETGKLRKLEELREDVPPGLL 85
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 28.7 bits (64), Expect = 7.6
Identities = 30/114 (26%), Positives = 40/114 (35%), Gaps = 30/114 (26%)
Query: 125 LLDDENPNTQFEATWALTNIASGTS-EQTMTVINANAIPK------FLQLLSSPHLNLAE 177
L DD N TQ + W + +A+ T T+ +A + F Q L+S L
Sbjct: 228 LADDANWRTQ--SAWWQSCVATVTYIYSTLNRYDATSFADSQAIIEFRQKLASEINKLQH 285
Query: 178 --------QATWALGNIAGDGARA------RDLLLGLGTMPQILALVQPNTPTT 217
Q+ W + AR LL LG M PNTP T
Sbjct: 286 AVAEGQCWQSDWRISESEAMAARECNLENICQTLLQLGQM-------DPNTPPT 332
>gnl|CDD|205862 pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small
soluble protein involved in intracellular sulfur
reduction. The family also includes YrkE proteins.
Length = 156
Score = 27.6 bits (62), Expect = 8.8
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA 116
M + + S M + T+ +K++ K+ P ++ELIE
Sbjct: 65 PMMPRGSAK-LPLSKMNMAGMGTKMMKKVMKKKGVPSLEELIEM 107
>gnl|CDD|173953 cd08194, Fe-ADH6, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which contain
different protein domains. Alcohol dehydrogenase
catalyzes the reduction of acetaldehyde to alcohol with
NADP as cofactor. Its activity requires iron ions.
Length = 375
Score = 28.4 bits (64), Expect = 9.2
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 277 DKIQAVVDTGVVPRLVELLDSE--ETTILTAALR--TVGNIATG----NDHQTDCVIQAG 328
DK+ +V G+V +L + L E E+ I + T ++ G + D +I G
Sbjct: 31 DKV--MVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALG 88
Query: 329 G 329
G
Sbjct: 89 G 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,217,992
Number of extensions: 2153829
Number of successful extensions: 2043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2000
Number of HSP's successfully gapped: 65
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.6 bits)