RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9169
(440 letters)
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 381 bits (980), Expect = e-128
Identities = 181/398 (45%), Positives = 244/398 (61%), Gaps = 8/398 (2%)
Query: 1 MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLD----- 54
+ K R+ +FKN G+ S DE+RR+R VELRKA +D+ L KRRN
Sbjct: 8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADS 67
Query: 55 EIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI 114
+ E+E+ + S ++ +P+M + + S + + ++ AT R++LS+E PPID +I
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 115 EAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 173
+AGVVP VE + +++ Q EA WALTNIASGTS QT V++A+A+P F+QLL + +
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 174 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233
+ EQA WALGN+AGD RD +L M IL L N P+ +R W +SNLCR K
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGK 246
Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293
P PD+ + LP L +LI++ D ETL D CWA+SY+SDG + IQAV+D + RLVE
Sbjct: 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306
Query: 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 353
LL E T + T ALR VGNI TGND QT VI AG L ++ LLSS + NI KEA WTIS
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366
Query: 354 NITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEAL 391
NITAGN+ QI VI + + L+E + K EA
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404
Score = 202 bits (515), Expect = 1e-59
Identities = 78/366 (21%), Positives = 159/366 (43%), Gaps = 14/366 (3%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
VP I+ + + + +++ A + ++ + D +++ + + L + P+
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR 233
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
ATW L+N+ G Q + + A+P +L+ S A WA+ ++ A
Sbjct: 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 293
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
++ + +++ L+ + + A+ N+ + LP L L+ +
Sbjct: 294 AVIDVRIPKRLVELLSHESTLV-QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ CW +S I+ G+ ++IQAV+D ++P LV+LL+ E A + N ++
Sbjct: 353 PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412
Query: 316 GNDHQTDCV---IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL 372
G + D + + G ++ + LL + I++ + NI + D + +
Sbjct: 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI--LKMGEADKEARGLNI 470
Query: 373 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPV 432
N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F + + E P
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMA-------PQ 523
Query: 433 NTVNGF 438
N N F
Sbjct: 524 NAGNTF 529
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 360 bits (924), Expect = e-120
Identities = 158/403 (39%), Positives = 230/403 (57%), Gaps = 21/403 (5%)
Query: 22 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
R E A + Q ++ D+ + + + +V ++++
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMA---DIGSNQGTVNWSVEDIVK 64
Query: 82 GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWA 140
G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V L + QFE+ WA
Sbjct: 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWA 124
Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
LTNIASGTSEQT V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 201 GTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT 256
G + +LAL+ +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 316
D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMA 376
D QT VI AG L LL++ + NI KEA WT+SNITAG QI V+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV--------- 355
Query: 377 LLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI 419
G + L + + ++ I+ + I
Sbjct: 356 ----NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 346 bits (888), Expect = e-116
Identities = 164/368 (44%), Positives = 214/368 (58%), Gaps = 20/368 (5%)
Query: 52 QLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 111
E + N+ + P + +MIE + S +P+ ++ AT+ RK+LSKE +PPID
Sbjct: 4 GFHEAQINNMEMA------PGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID 57
Query: 112 ELI-EAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
E+I GVV VE L EN QFE+ W LTNIASG S QT VI A A+P F++LLS
Sbjct: 58 EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS 117
Query: 170 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229
S ++ EQA WALGNIAGD RD +L +P +L L T RN VWA+SNL
Sbjct: 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289
CR K+P P+F K+ CL +L+ L+ +D + L+D CWALSY+SDG NDKIQAV+D GV
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
RLVELL + +++ ALR VGNI TG+D QT ++ LQ + LLSS + +I KEA
Sbjct: 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEAC 297
Query: 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409
WTISNITAGN QI VI + + LQ E T + + I +
Sbjct: 298 WTISNITAGNRAQIQTVIDANIFPAL------------ISILQTAEFRTRKEAAWAITNA 345
Query: 410 AFNDSAEN 417
SAE
Sbjct: 346 TSGGSAEQ 353
Score = 195 bits (496), Expect = 1e-57
Identities = 78/345 (22%), Positives = 146/345 (42%), Gaps = 6/345 (1%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
VP IE + S ++ A A ++ + D +++ ++P ++L +N T
Sbjct: 109 VPIFIELLSSEFEDVQEQAVW-ALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
Query: 136 E-ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
A WAL+N+ G S + + LL ++ A WAL ++
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227
Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
++ G +++ L+ N + + A+ N+ + L L L+
Sbjct: 228 QAVIDAGVCRRLVELLMHNDYKV-VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
+ + CW +S I+ G+ +IQ V+D + P L+ +L + E A + N
Sbjct: 287 SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346
Query: 315 TGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
+G Q +++ G ++ + LL+ IV+ A + NI + + +N
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG--EQEAKRNGTGIN 404
Query: 374 QMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 418
L+EE+ GL+K+E LQ HEN+ +YQK + +I F E+S
Sbjct: 405 PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 235 bits (602), Expect = 1e-75
Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 2/240 (0%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M + + S + + ++ ATR + + + + I +I+AG +P V+LL N
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQ-ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NIA G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
++ G +P ++ L+ L+ +WA+SN+ N LP L QL+ +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ + L + WALS I+ G N++ QAV + G + +L +L E I A + + +
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 152 bits (385), Expect = 2e-43
Identities = 50/125 (40%), Positives = 71/125 (56%)
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
LP + Q +++ D++ S I N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 366 VIQEG 370
VI G
Sbjct: 134 VIDAG 138
Score = 142 bits (361), Expect = 5e-40
Identities = 83/284 (29%), Positives = 121/284 (42%), Gaps = 72/284 (25%)
Query: 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 213
+ + +P+ Q L+S + AT I DG ++ G +P ALVQ
Sbjct: 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQ-- 61
Query: 214 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273
L+ + + + L + WALS I+
Sbjct: 62 --------------------------------------LLSSPNEQILQEALWALSNIAS 83
Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 333
G N++IQAV+D G +P LV+LL S IL AL + NIA+G + Q VI AG L +
Sbjct: 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143
Query: 334 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL--------------------- 372
+LLSS I++EA W +SNI +G + QI VI G L
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203
Query: 373 --------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
N+ V+E+G LEKLE LQ HENE + ++ + +
Sbjct: 204 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 229 bits (586), Expect = 5e-70
Identities = 64/343 (18%), Positives = 131/343 (38%), Gaps = 18/343 (5%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
V ++ M+++N T LS R + + ++G +P V++L + F
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
A L N+ M V A + K + LL+ ++ T L +A ++
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
++L G ++ +++ T L + L + P + + L +
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTD 238
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ + W L +SD + G++ LV+LL S++ ++T A + N+
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295
Query: 316 GNDHQTDCVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
N V Q GG++ + + + + R +I + A + ++T+ + QE E+
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--------QEAEMA 347
Query: 374 QMALLVEESGGLEKL-EALQHHENETVYQKCYKIISMAFNDSA 415
Q A V GL + + L + + + +I A
Sbjct: 348 QNA--VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388
Score = 188 bits (479), Expect = 2e-54
Identities = 62/314 (19%), Positives = 117/314 (37%), Gaps = 7/314 (2%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQ 134
+PE+ + + + + A + LSK+ + +V V + + N T
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
L N+ S E + + + IP +++L SP ++ A L N+ A+
Sbjct: 78 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
+ G + +++AL+ FL + L + L ++
Sbjct: 137 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
T E L + + + A+V+ G + L L ++ L T+ N++
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
D T G L + +LL S +N+V AA +SN+T N + V Q G +
Sbjct: 256 ---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312
Query: 375 MALLVEESGGLEKL 388
+ V +G E +
Sbjct: 313 LVRTVLRAGDREDI 326
Score = 161 bits (409), Expect = 2e-44
Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 43/358 (12%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
++ M++ + + T K+LS ++EAG + L D +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
W L N++ ++Q + +QLL S +N+ A L N+ + + +
Sbjct: 246 NCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302
Query: 196 LLLGLGTMPQILALVQPNTPTTFLR-NIVWAISNLCRNKNPAPDFEKIKI---CLPLLNQ 251
++ +G + ++ V + + A+ +L A + LP++ +
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362
Query: 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
L+H L L + + G +PRLV+LL
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422
Query: 312 NIATG---------------------NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
+ H + + +LL S NI + AA
Sbjct: 423 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482
Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
+ + + A +E G L L H NE V ++
Sbjct: 483 VLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Score = 161 bits (409), Expect = 2e-44
Identities = 45/300 (15%), Positives = 114/300 (38%), Gaps = 19/300 (6%)
Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL- 168
D + +P +LL+DE+ +A + ++ + + + + + ++ +
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69
Query: 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228
++ + A L N++ + G +P ++ ++ + L + + N
Sbjct: 70 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHN 127
Query: 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 288
L ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 348
LV ++ + L V + + +++AGG+Q + L+ +V+
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 349 AWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
WT+ N++ ++Q G L L L ++ V I+S
Sbjct: 248 LWTLRNLSDAATKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAGILS 291
Score = 151 bits (382), Expect = 1e-40
Identities = 37/256 (14%), Positives = 88/256 (34%), Gaps = 12/256 (4%)
Query: 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 199
A+ N+ + Q + AIP+ +LL+ + +A + ++ A ++
Sbjct: 1 AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI----CLPLLNQLIHT 255
+ I+ +Q R + NL ++ + I +P L +++ +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-----LLAIFKSGGIPALVKMLGS 112
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
L L + AV G + ++V LL+ L + +A
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172
Query: 316 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQM 375
GN ++ +GG Q + ++ + + + + + S +++ G + +
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232
Query: 376 ALLVEESGGLEKLEAL 391
L + + L
Sbjct: 233 GLHLTDPSQRLVQNCL 248
Score = 146 bits (369), Expect = 7e-39
Identities = 53/365 (14%), Positives = 129/365 (35%), Gaps = 19/365 (5%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ +M+ + +N K I T + L+ ++ +G V ++
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQI-LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
T + + S S ++ A + L+ P L + W L N++ D A ++
Sbjct: 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE 262
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APDFEKIKICLPLLNQLIH 254
+ GL + ++ L+ + + +SNL N ++ L+ ++
Sbjct: 263 GMEGL--LGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319
Query: 255 TTDVETL-SDICWALSYISDGHNDK---IQAVVDTGVVPRLVELLDSEETTILTAALRTV 310
D E + AL +++ H + AV +P +V+LL L A +
Sbjct: 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379
Query: 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE- 369
+ + G + ++ +LL + + + + + +++ +++
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439
Query: 370 -GELNQMA------LLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIEN 421
G L+ +A +++ + L + E + + ++ +A + A +IE
Sbjct: 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499
Query: 422 GDTIE 426
Sbjct: 500 EGATA 504
Score = 135 bits (341), Expect = 5e-35
Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 32/307 (10%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ + + + ++ + R LS + G++ V+LL ++ N
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRN-LSDA---ATKQEGMEGLLGTLVQLLGSDDINVVT 284
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGA-- 191
A L+N+ + M V I ++ + + ++ E A AL ++
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344
Query: 192 -RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
A++ + +P ++ L+ P + ++ V I NL + +P L
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLV 403
Query: 251 QLIHTTDVETLSDICWALSYISDG---------------------HNDKIQAVVDTGVVP 289
QL+ +T + + +P
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463
Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
V+LL S I A + +A + + + G + +LL S + AA
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAA 522
Query: 350 WTISNIT 356
+ ++
Sbjct: 523 AVLFRMS 529
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 226 bits (578), Expect = 9e-68
Identities = 65/355 (18%), Positives = 135/355 (38%), Gaps = 19/355 (5%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
V ++ M+++N T LS R + + ++G +P V++L + F
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
A L N+ M V A + K + LL+ ++ T L +A ++
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
++L G ++ +++ T L + L + P + + L +
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTD 235
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ + W L +SD + G++ LV+LL S++ ++T A + N+
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292
Query: 316 GNDHQTDCVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
N V Q GG++ + + + + R +I + A + ++T+ + QE E+
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--------QEAEMA 344
Query: 374 QMALLVEESGGLEKL-EALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 426
Q A V GL + + L + + + +I +A + + I
Sbjct: 345 QNA--VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 397
Score = 176 bits (448), Expect = 3e-49
Identities = 46/311 (14%), Positives = 117/311 (37%), Gaps = 20/311 (6%)
Query: 107 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 166
+ D + +P +LL+DE+ +A + ++ + + + + + ++
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 167 LLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225
+ + + A L N++ + G +P ++ ++ + L +
Sbjct: 64 TMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITT 121
Query: 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 285
+ NL ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
G LV ++ + L V + + +++AGG+Q + L+ +V
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241
Query: 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 405
+ WT+ N++ ++Q G L L L ++ V
Sbjct: 242 QNCLWTLRNLSDAATKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAG 285
Query: 406 IIS-MAFNDSA 415
I+S + N+
Sbjct: 286 ILSNLTCNNYK 296
Score = 176 bits (447), Expect = 4e-49
Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 9/315 (2%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQ 134
+PE+ + + + + A + LSK+ + +V V + + N T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
L N+ S E + + + IP +++L SP ++ A L N+ A+
Sbjct: 75 RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLI 253
+ G + +++AL+ FL + L + L+N +
Sbjct: 134 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192
Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
T + L L +S ++K A+V+ G + L L ++ L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
+ D T G L + +LL S +N+V AA +SN+T N + V Q G +
Sbjct: 252 S---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 374 QMALLVEESGGLEKL 388
+ V +G E +
Sbjct: 309 ALVRTVLRAGDREDI 323
Score = 160 bits (406), Expect = 2e-43
Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 43/373 (11%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
++ M++ + + T K+LS ++EAG + L D +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
W L N++ ++Q + +QLL S +N+ A L N+ + + +
Sbjct: 243 NCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 196 LLLGLGTMPQILALVQPNTPTTFLR-NIVWAISNLCRNKNPAPDFEKIKI---CLPLLNQ 251
++ +G + ++ V + + A+ +L A + LP++ +
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
L+H L L + + G +PRLV+LL
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 419
Query: 312 NIATG---------------------NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
+ H + + +LL S NI + AA
Sbjct: 420 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479
Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
+ + A + + +E G L L H NE V ++
Sbjct: 480 VLCEL-AQDKEAAE-------------AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525
Query: 411 FNDSAENSIENGD 423
D ++ +
Sbjct: 526 SEDKPQDYKKRLS 538
Score = 104 bits (260), Expect = 3e-24
Identities = 43/317 (13%), Positives = 91/317 (28%), Gaps = 31/317 (9%)
Query: 83 MKSSNPKMRMIATRSARKMLS--KERHPPIDELIEAGVVPICVELLDDENPNTQFEATWA 140
+ A + R + S +E + + +P+ V+LL + +AT
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375
Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
L + + AIP+ +QLL H + + + + +
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI--- 432
Query: 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
+ A+ L R+ + + +PL QL+++
Sbjct: 433 ------------------VEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIENI 473
Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
L ++ + +A+ G L ELL S + T A + ++
Sbjct: 474 QRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532
Query: 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI---TAGNSRQIDHVIQEGELNQMAL 377
+ ++ L + + + A + RQ D +
Sbjct: 533 ---YKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589
Query: 378 LVEESGGLEKLEALQHH 394
+ + E HH
Sbjct: 590 DALGMDPMMEHEMGGHH 606
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 201 bits (512), Expect = 1e-57
Identities = 48/354 (13%), Positives = 135/354 (38%), Gaps = 10/354 (2%)
Query: 17 AGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSP---IK 73
+GK E ++ E + +Q F + + +D M P +
Sbjct: 47 SGKGNPEDDDVDNQVLYEWEQGF--NQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104
Query: 74 MTVPEMIEGMKSSNPKMRMIA--TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENP 131
+ + ++ +A ++ + + + D + +P +LL+DE+
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164
Query: 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDG 190
+A + ++ + + + + + ++ + + + + A + L N++
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HH 223
Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
+ G +P ++ ++ + L + + + NL ++ A ++ L +
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSV-LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282
Query: 251 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + L V
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Query: 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
+ + +++AGG+Q + L+ +V+ WT+ N++ ++Q
Sbjct: 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396
Score = 154 bits (390), Expect = 5e-41
Identities = 57/369 (15%), Positives = 131/369 (35%), Gaps = 27/369 (7%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ +M+ + +N K I T + L+ ++ +G V ++
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQI-LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
T + + S S ++ A + L+ P L + W L N++ D A ++
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE 395
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-----LPLLN 250
+ GL + ++ L+ + + +SNL N N K+ +C L+
Sbjct: 396 GMEGL--LGTLVQLLGSDDINV-VTCAAGILSNLTCN-NYK---NKMMVCQVGGIEALVR 448
Query: 251 QLIHTTDVE-TLSDICWALSYISDGHNDK---IQAVVDTGVVPRLVELLDSEETTILTAA 306
++ D E AL +++ H D AV +P +V+LL L A
Sbjct: 449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508
Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366
+ + + G + ++ +LL + + + + + +++ +
Sbjct: 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568
Query: 367 IQE--GELNQMA------LLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 417
++ G L+ +A +++ + L + E + + ++ +A + A
Sbjct: 569 VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 628
Query: 418 SIENGDTIE 426
+IE
Sbjct: 629 AIEAEGATA 637
Score = 141 bits (357), Expect = 1e-36
Identities = 46/384 (11%), Positives = 112/384 (29%), Gaps = 34/384 (8%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ + + + ++ + L + G++ V+LL ++ N
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWT----LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 417
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIA---GDG 190
A L+N+ + M V I ++ + + ++ E A AL ++ D
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477
Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
A++ + +P ++ L+ P + ++ V I NL + +P L
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLV 536
Query: 251 QLIHTTDVETLSDICWALSYISDG---------------------HNDKIQAVVDTGVVP 289
QL+ +T + + +P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596
Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
V+LL S I A + +A + + + G + +LL S + AA
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655
Query: 350 WTISNITAGNSRQIDHVIQEGELNQM--ALLVEESGGLEKLEALQHHENETVYQKCYKII 407
+ ++ + + + + + + + + Y++
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSY 715
Query: 408 SMAFNDSAENSIENGDTIEFNPQP 431
+ D + +
Sbjct: 716 RSFHSGGYGQDAMGMDPMMEHEMA 739
Score = 97.8 bits (243), Expect = 6e-22
Identities = 41/318 (12%), Positives = 87/318 (27%), Gaps = 25/318 (7%)
Query: 83 MKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDDENPNTQFEATWA 140
+ A + R + S+ + + + +P+ V+LL + +AT
Sbjct: 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511
Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
L + + AIP+ +QLL H + + +
Sbjct: 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--------------- 556
Query: 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
V+ + A+ L R+ + + +PL QL+++
Sbjct: 557 ------QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN-TIPLFVQLLYSPIENI 609
Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
L ++ + +A+ G L ELL S + T A + ++
Sbjct: 610 QRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668
Query: 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
+ + + + + RQ D +
Sbjct: 669 YKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAM 728
Query: 381 ESGGLEKLEALQHHENET 398
+ + E HH
Sbjct: 729 GMDPMMEHEMAGHHPGPD 746
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 180 bits (459), Expect = 8e-55
Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 HVIQEGEL-----------------------------NQMALLVEESGGLEKLEALQHHE 395
VI G L N+ V+E+G LEKLE LQ HE
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Query: 396 NETVYQKCYKIIS 408
NE + ++ + +
Sbjct: 193 NEKIQKEAQEALE 205
Score = 165 bits (420), Expect = 4e-49
Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSS
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230
P+ + ++A WAL NIA G ++ G
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAG----------------------------- 96
Query: 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 290
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P
Sbjct: 97 --------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142
Query: 291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
LV+LL S IL AL + NIA+G + Q V +AG L+K+++L S I KEA
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 351 TISNITA 357
+ + +
Sbjct: 203 ALEKLQS 209
Score = 152 bits (386), Expect = 4e-44
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 44/240 (18%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+M++ + S + + A R + ++ + I +I+AG +P V+LL N
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQ-IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
EA WAL+NIASG +EQ VI+A A+P +QLLSSP+ + ++A WAL NIA
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS------- 125
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
G QI A++ LP L QL+ +
Sbjct: 126 -----GGNEQIQAVIDAG-------------------------------ALPALVQLLSS 149
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+ + L + WALS I+ G N++ QAV + G + +L +L E I A + + +
Sbjct: 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 100 bits (251), Expect = 1e-24
Identities = 36/103 (34%), Positives = 55/103 (53%)
Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
+P++V+ L+S + L +ALR + IA+G + Q VI AG L + +LLSS
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 340 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382
I++EA W +SNI +G + QI VI G L + L+
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 183 bits (466), Expect = 3e-54
Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 23/308 (7%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--------- 126
+ + M + A K+ E H + E G + ELL
Sbjct: 34 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR--HAMNELGGLQAIAELLQVDCEMYGL 91
Query: 127 --DDENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWAL 183
D + + A ALTN+ G T+ + + + L S +L + L
Sbjct: 92 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151
Query: 184 GNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFE 240
N++ ++ L +G++ ++ + L++++ A+ NL + +N A
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211
Query: 241 KIKICLPLLNQLIH---TTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVEL 294
L+ L + T + + L +S + D Q + + + L++
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354
L S TI++ A T+ N++ N + + G + +K L+ S I +A + N
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
Query: 355 ITAGNSRQ 362
+ A +
Sbjct: 332 LMANRPAK 339
Score = 168 bits (428), Expect = 1e-48
Identities = 54/341 (15%), Positives = 106/341 (31%), Gaps = 48/341 (14%)
Query: 115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 172
+ + + A L + S E + + +LL
Sbjct: 30 HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 88
Query: 173 ---------LNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNTPTTFLRNI 222
+ L A AL N+ + L + G M ++A ++ + + I
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 147
Query: 223 VWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYIS-DGHN 276
+ NL + K + L+ + TL + AL +S
Sbjct: 148 ASVLRNLSWRADVNS---KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204
Query: 277 DKIQAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGG 329
+K G + LV L T LR V ++ N+ + +
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264
Query: 330 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLE 389
LQ + + L S + IV A T+ N++A N + + + G + L+
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-------------GAVSMLK 311
Query: 390 ALQHHENETVYQKCYKIIS-MAFNDSAE----NSIENGDTI 425
L H +++ + + + N A+ N + G ++
Sbjct: 312 NLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352
Score = 64.9 bits (158), Expect = 1e-11
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 25/156 (16%)
Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 333
+ + + + + A+ + ++ +H+ + + GGLQ +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAI 78
Query: 334 KKLLSSSR-----------VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382
+LL + + + A ++N+T G+ A L
Sbjct: 79 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV------------ANKATLCSMK 126
Query: 383 GGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 417
G + L A E+E + Q ++ +++ +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
Score = 34.8 bits (80), Expect = 0.052
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 305 AALRTVGNI-ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 363
L + I A G+ + K + + + + A + + + +
Sbjct: 8 HMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHR 66
Query: 364 DHVIQEG 370
+ + G
Sbjct: 67 HAMNELG 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 179 bits (455), Expect = 1e-51
Identities = 64/375 (17%), Positives = 130/375 (34%), Gaps = 27/375 (7%)
Query: 9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN--IDQLDEIEEENVTVIEP 66
D+ + + E R + + + DD+ +R + L++I T E
Sbjct: 83 DKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 142
Query: 67 TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL 126
+ + + M + A K+ E H + E G + ELL
Sbjct: 143 --QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELL 198
Query: 127 -----------DDENPNTQFEATWALTNIASGTSEQTMTVI-NANAIPKFLQLLSSPHLN 174
D + + A ALTN+ G T+ + + L S +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258
Query: 175 LAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC--- 230
L + L N++ ++ L +G++ ++ + L++++ A+ NL
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318
Query: 231 -RNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDICWALSYISD---GHNDKIQAVVDT 285
NK + + + L T + + L +S + D Q + +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
+ L++ L S TI++ A T+ N++ N + + G + +K L+ S I
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 346 KEAAWTISNITAGNS 360
+A + N+ A
Sbjct: 439 MGSAAALRNLMANRP 453
Score = 106 bits (267), Expect = 2e-25
Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 73/357 (20%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPN-- 132
V ++ + + + +R +L+ + ++G +P+ ++LL + +
Sbjct: 34 VYSLLSMLGTHDKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSV 87
Query: 133 ----------TQFEATWALTNIASGTSEQTMTVINANAIPKFLQL--------------- 167
+ A+ AL NI + + Q+
Sbjct: 88 LLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147
Query: 168 ---------LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF 218
+ +P + A L ++ D R + LG + I L+Q +
Sbjct: 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYG 206
Query: 219 L----------RNIVWAISNLCRNKNPAPDFEKIKIC-----LPLLNQLIHTTDVETLSD 263
L R A++NL K +C + L + + +
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVAN----KATLCSMKGCMRALVAQLKSESEDLQQV 262
Query: 264 ICWALSYISDGHNDKIQ-AVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGND-HQ 320
I L +S + + + + G V L+E + ++ + L + L + N++ ++
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322
Query: 321 TDCVIQAGGLQKMKKLLS----SSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEG 370
D G L + L+ ++ + I++ + N++ A N + +
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379
Score = 79.6 bits (196), Expect = 3e-16
Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 18/218 (8%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
+ ++ +KS + ++ + R + + L E G V +E + + +T
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304
Query: 135 FEATWALTNIASGTSEQTMTVINAN-AIPKFLQLLSSPH----LNLAEQATWALGNIAGD 189
AL N+++ +E + + A+ + L+ L + E L N++
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
Query: 190 GAR---ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC- 245
A R +L + +L ++ ++ T + N + NL NP ++ +
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTI-VSNACGTLWNLSAR-NPK---DQEALWD 419
Query: 246 ---LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280
+ +L LIH+ AL + K +
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 136 bits (343), Expect = 8e-36
Identities = 34/303 (11%), Positives = 92/303 (30%), Gaps = 20/303 (6%)
Query: 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
+P V+ L ++ Q + + + V I K + LL SP+ N+ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238
A AL N+ + + + ++L++ + + + NL +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 239 FEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHNDKIQAV 282
I LP+L + D E + L +S +
Sbjct: 124 L--IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 283 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSR 341
+G++ L+ + + + ++ + ++++ ++
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 342 VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK-LEALQHHENETVY 400
++ + N+ + +E + + + S + L + + +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 401 QKC 403
+ C
Sbjct: 302 EAC 304
Score = 79.9 bits (196), Expect = 2e-16
Identities = 54/360 (15%), Positives = 118/360 (32%), Gaps = 50/360 (13%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
+ ++++ ++S N ++ A A + L E + V LL N Q
Sbjct: 46 ICKLVDLLRSPNQNVQQAAA-GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ---------------- 178
+ T L N++S + + A+A+P + P +
Sbjct: 105 KQLTGLLWNLSSTDELKE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162
Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF-----LRNIVWAISNLCRNK 233
AT L N++ A + + G + ++A VQ + + N + + NL
Sbjct: 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL 222
Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA------------ 281
+ ++ L E S C++ +N+
Sbjct: 223 D-----AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277
Query: 282 -VVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDC-----VIQAGGLQKMK 334
+ + + + L+ S++ L A + N+ + ++ GL ++
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337
Query: 335 KLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH 394
+LL S ++V+ A +SN+ + + + + LL +G E +
Sbjct: 338 RLLQSGNSDVVRSGASLLSNM-SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396
Score = 76.8 bits (188), Expect = 3e-15
Identities = 47/357 (13%), Positives = 106/357 (29%), Gaps = 47/357 (13%)
Query: 76 VPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-------- 126
+ E + ++ + N +++ T + + E + A +P+ + +
Sbjct: 88 IREAVSLLRRTGNAEIQKQLTGLLWNLS---STDELKEELIADALPVLADRVIIPFSGWC 144
Query: 127 --------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------SPH 172
+ +P F AT L N++S + + + I + +
Sbjct: 145 DGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCD 204
Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL--------RNIVW 224
E L N++ A + ++ F N
Sbjct: 205 DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDC 264
Query: 225 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK-----I 279
+ N + LN + + TL AL ++
Sbjct: 265 PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324
Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
+ +P++ LL S + ++ + + N++ V+ ++ +LL+S
Sbjct: 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382
Query: 340 S------RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390
+I+ A +T+ N+ A + LN + L S + EA
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439
Score = 75.3 bits (184), Expect = 8e-15
Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 29/262 (11%)
Query: 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 173
+G++ + + + ++ + + + + ++ +
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR-QLEYNARNA 240
Query: 174 NLAEQATWALGNIAGDG---------------ARARDLLLGLGTMPQILALVQPNTPTTF 218
+ +T N + + L + L L+ +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 219 LRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISD 273
L A+ NL +K I LP + +L+ + + + + LS +S
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS- 359
Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETT------ILTAALRTVGNIATGNDHQTDCVIQA 327
+ + V+ V P + LL S IL++A TV N+ +
Sbjct: 360 -RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418
Query: 328 GGLQKMKKLLSSSRVNIVKEAA 349
L + L SS EAA
Sbjct: 419 SMLNNIINLCRSSASPKAAEAA 440
Score = 58.3 bits (140), Expect = 2e-09
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 13/172 (7%)
Query: 74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE-----LIEAGVVPICVELLDD 128
+ + M S + A A + L+ + ++ +P LL
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN------LAEQATWA 182
N + L+N++ V+ P+ +LL+S N + A +
Sbjct: 343 GNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400
Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234
+ N+ + + I+ L + + +S++ +K
Sbjct: 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
Score = 32.5 bits (73), Expect = 0.29
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLE 386
+ K + LSS A+ I + + V Q GG+
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-------------GGIC 47
Query: 387 KLEALQHHENETV 399
KL L N+ V
Sbjct: 48 KLVDLLRSPNQNV 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 137 bits (345), Expect = 2e-35
Identities = 56/403 (13%), Positives = 119/403 (29%), Gaps = 64/403 (15%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
+ + E + + + S + S + P +P + +L
Sbjct: 4 EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA 63
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGA 191
+ A L ++ + V IP + LL P + A AL NI+ G
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 251
+ + +P ++ L++ I + NL + + + + L L
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTD 181
Query: 252 LI------------------HTTDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLV 292
+ H L++ L +S ++ + + + G+V L+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241
Query: 293 ELLDSE-------------------------------ETTILTAALRTVGNIATGNDHQT 321
++ +E AA N T
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301
Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKE-AAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
+ + Q ++ LL S+ + E +A I N+ AG + +
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY---------GRYIRSALR 352
Query: 381 ESGGLEKLEALQHHENETVYQK-CYKIISMAFNDSAENSIENG 422
+ L + L +E+E V + + ++A + + I
Sbjct: 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKH 395
Score = 106 bits (266), Expect = 4e-25
Identities = 62/423 (14%), Positives = 140/423 (33%), Gaps = 68/423 (16%)
Query: 46 KRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKE 105
+R ++ LD + + P + + +PE+I + ++ A + + L
Sbjct: 25 ERGSLASLDSLRKGG-----PPPPNWRQPELPEVIAMLGFRLDAVKSNAA-AYLQHLCYR 78
Query: 106 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKF 164
++ + +P+ V LLD A AL NI+ G + + + N + +P
Sbjct: 79 NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 165 LQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF----- 218
++LL + ++L E T L N++ + + ++ ++ P++
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNED 197
Query: 219 -----------LRNIVWAISNLCRNKNPA--------------------------PDFEK 241
L N + N+ ++ A D +
Sbjct: 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257
Query: 242 IKICLPLLNQLIHTTDVETLSD------ICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295
++ C+ LL L + E + + + VV + LL
Sbjct: 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317
Query: 296 -DSEETTILTAALRTVGNIATGNDHQTD----CVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
+S+ IL A+ + N+ G + Q L + LL++ +VK A+
Sbjct: 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377
Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
+ N+ + +I + + + + + + + +TV I +
Sbjct: 378 ALRNLAVDARNKE--LIGKHAIPNLVKNLPGG----QQNSSWNFSEDTVISILNTINEVI 431
Query: 411 FND 413
+
Sbjct: 432 AEN 434
Score = 74.2 bits (181), Expect = 2e-14
Identities = 54/387 (13%), Positives = 116/387 (29%), Gaps = 80/387 (20%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
+P ++ + ++ + A + + + + VP V LL + +
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQA--------------- 179
T L N++S + I +A+ + PH +
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209
Query: 180 ---TWALGNIAGDGARARDLLLGLGTMPQIL------ALVQPNTPTTFLRNIVWAISNL- 229
L N++ + + AR L + L + Q ++ + + N V + NL
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 230 -------------------------CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 264
+ ++ ++ L + L
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329
Query: 265 CWALSYISDGH----NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
A+ + G A+ + + +LL +E ++ AA + N+A ++
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389
Query: 321 TDCVIQAGGLQKMKKLLSSSRVN--------IVKEAAWTISNITAGNSRQIDHVIQEGEL 372
+I + + K L + N V TI+ + A N
Sbjct: 390 E--LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN------------- 434
Query: 373 NQMALLVEESGGLEKLEALQHHENETV 399
+ A + E+ G+EKL + N +
Sbjct: 435 LEAAKKLRETQGIEKLVLINKSGNRSE 461
Score = 55.7 bits (133), Expect = 1e-08
Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 14/169 (8%)
Query: 85 SSNPKMRMIATRSARKMLSKERHPPID---ELIEAGVVPICVELLDDENPNTQFEATWAL 141
S P + + + + + + L + + +LL +E+ A+ AL
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379
Query: 142 TNIASGTSEQTMTVINANAIPKFLQLLSSPHLN--------LAEQATWALGNIAGDGARA 193
N+A + +I +AIP ++ L N + + + A
Sbjct: 380 RNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437
Query: 194 RDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEK 241
L + +++ + + N +R + + K EK
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 131 bits (330), Expect = 3e-35
Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 2/226 (0%)
Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 171
++ + P E + + A L ++ + + L +
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94
Query: 172 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231
L +A +G + + A ++ +LGLG + ++L L+ + T ++AIS L R
Sbjct: 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154
Query: 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291
+ +L + + + + L + GH + + G+V +L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214
Query: 292 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
V L+ +E + L + ++ T + +++LL
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELL 258
Score = 69.7 bits (170), Expect = 2e-13
Identities = 18/125 (14%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTN 143
+ + +R+ A A L +E+ + + + + + + + + ++ + L N
Sbjct: 135 RDACDTVRVKAL-FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193
Query: 144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGT 202
+ G E T+ + + + + L+ + H E AL ++ D + R+
Sbjct: 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG 253
Query: 203 MPQIL 207
+ ++L
Sbjct: 254 LEELL 258
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 131 bits (331), Expect = 3e-33
Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 49/351 (13%)
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-------- 153
L+ + + + + ++L N + + N+ + +Q M
Sbjct: 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELA 465
Query: 154 ------------------------TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189
+ N L + N E L + G
Sbjct: 466 KFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525
Query: 190 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--- 246
R ++ G + +L + T R+ A++ + NP F +
Sbjct: 526 -KELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIR 583
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
PLLN L + AL+ ++ + Q ++ V ++ L + + AA
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643
Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366
+ + N+ D ++ + L A ++ IT+ + + + +
Sbjct: 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703
Query: 367 IQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 417
+ + L+ L L + + V + II N E
Sbjct: 704 L------------AIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742
Score = 120 bits (301), Expect = 3e-29
Identities = 41/318 (12%), Positives = 103/318 (32%), Gaps = 10/318 (3%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ K+ + + + R + + ++++ G V + + + +
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKEL--RGKVVQEGGVKALLRMALEGTEKGKR 554
Query: 136 EATWALTNIASGTSEQTM--TVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGAR 192
AT AL I + + + + I L LL ++ AL N+A
Sbjct: 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614
Query: 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
R ++ + +I + R + NL +++ FE + L L
Sbjct: 615 VRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673
Query: 253 IHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVG 311
D ET + AL+ I+ + ++ + L L+ + + + +
Sbjct: 674 CEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733
Query: 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGE 371
N+ + + + ++ + L K + A +I I+ +
Sbjct: 734 NMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI---IERSD 790
Query: 372 LNQMALLVEESGGLEKLE 389
++ + E+ + ++
Sbjct: 791 NAEIPDVFAENSKISEII 808
Score = 100 bits (250), Expect = 8e-23
Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 44/323 (13%)
Query: 88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG 147
IA+ ++ + + + L + ++ T A+T + +G
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277
Query: 148 TSEQTMTVINA-NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 206
+ V+ + L + ++ A L + +A+ L + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG--VDIL 335
Query: 207 LALVQPNTPTTFLRNIVWAISNLCRNKN------PAPDFEKIKICLPLLNQLIHTT-DVE 259
L + + L P D +K+ LI D +
Sbjct: 336 KRLYHSKNDGI-RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394
Query: 260 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319
L+Y++ K + + D + L++L + L + T N+ +
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454
Query: 320 QT--------------------------------DCVIQAGGLQKMKKLLSSSRVNIVKE 347
Q + G + L + N +
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514
Query: 348 AAWTISNITAGNSRQIDHVIQEG 370
A ++ + G V+QEG
Sbjct: 515 IARVLNAV-CGLKELRGKVVQEG 536
Score = 77.6 bits (190), Expect = 2e-15
Identities = 29/224 (12%), Positives = 60/224 (26%)
Query: 70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
+ ++ ++ + + A L+ +I+ V L ++
Sbjct: 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED 635
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189
+ A L N+ M N + + L A AL I
Sbjct: 636 HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695
Query: 190 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 249
+ + +L + + IL + N + I N+ + LL
Sbjct: 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755
Query: 250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293
+ L D A ++ +I D +P +
Sbjct: 756 SGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 106 bits (267), Expect = 6e-27
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 21/202 (10%)
Query: 115 EAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 172
+ V +L D P+ A + + SE V I K LQLL +
Sbjct: 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65
Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232
++ AL N+ + + + L +P++L +++ + I + NL N
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 233 KNPAPDFEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHN 276
I L L + I D + ++ L +S
Sbjct: 126 DKLKNLM--ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183
Query: 277 DKIQAVVDT-GVVPRLVELLDS 297
D +A+ G++ LV +
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRG 205
Score = 66.1 bits (161), Expect = 1e-12
Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 20/189 (10%)
Query: 202 TMPQILA-LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
T+ + ++ L + + + I + C K+ A + L QL+ + +
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDH 319
+C AL + ND V + VPRL+++L + + + N+++ +
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128
Query: 320 QTDCVIQAGGLQ----------------KMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 363
+ ++ L K +I + N+++ +
Sbjct: 129 KN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186
Query: 364 DHVIQEGEL 372
+ + L
Sbjct: 187 KAMRRCDGL 195
Score = 61.9 bits (150), Expect = 4e-11
Identities = 16/149 (10%), Positives = 54/149 (36%), Gaps = 1/149 (0%)
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
+S + + ++ + V + +L++LL + + A + N+
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81
Query: 316 GNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
++ V + G+ ++ ++L +R + K+ + N+++ + + + +
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLT 141
Query: 375 MALLVEESGGLEKLEALQHHENETVYQKC 403
+++ SG E + +
Sbjct: 142 ENIIIPFSGWPEGDYPKANGLLDFDIFYN 170
Score = 55.3 bits (133), Expect = 6e-09
Identities = 15/105 (14%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 288 VPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
+ R V +L+++ + ++AA + + V Q G+ K+ +LL ++
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390
+ + N+ ++ V + + ++ +++++ LE +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 70.9 bits (174), Expect = 4e-16
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 50
R FKN GK EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 2 ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 69.7 bits (171), Expect = 6e-14
Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 57/246 (23%)
Query: 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQ 134
V I+ ++ + +R A + K+ + V ++ L DE+ +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER------------AVEPLIKALKDEDAWVR 67
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
A AL I A+ ++ L + + A ALG I RA
Sbjct: 68 RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DERAV 114
Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
+ L+ AL F+R + A L + + L + +
Sbjct: 115 EPLIK--------AL---KDEDWFVR--IAAAFALGEIGDER--------AVEPLIKALK 153
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
D AL I V + +L ++ A+ +
Sbjct: 154 DEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 202
Query: 315 TGNDHQ 320
+ N H
Sbjct: 203 SFNHHH 208
Score = 55.8 bits (135), Expect = 3e-09
Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 56/250 (22%)
Query: 113 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 172
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED 63
Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232
+ A ALG I RA + L+ AL + ++R A L +
Sbjct: 64 AWVRRAAADALGQIG--DERAVEPLIK--------ALKDED---GWVR--QSAAVALGQI 108
Query: 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292
+ + L + + D +AL I D V L+
Sbjct: 109 GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLI 149
Query: 293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 352
+ L E+ + +A +G I M+KL + K A +
Sbjct: 150 KALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198
Query: 353 SNITAGNSRQ 362
+ N
Sbjct: 199 ETHKSFNHHH 208
Score = 42.7 bits (101), Expect = 9e-05
Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 57/244 (23%)
Query: 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 216
+ + +++ L + A +ALG I + RA + L I AL +
Sbjct: 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--RAVEPL--------IKALKDEDAWV 66
Query: 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276
R A+ + + + L + + D AL I
Sbjct: 67 R--RAAADALGQI---GDER--------AVEPLIKALKDEDGWVRQSAAVALGQIG---- 109
Query: 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 336
D V L++ L E+ + AA +G I G++ + +I+A
Sbjct: 110 -------DERAVEPLIKALKDEDWFVRIAAAFALGEI--GDERAVEPLIKA--------- 151
Query: 337 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----EGELNQMALLVEESGGLEKLEAL 391
L + + AA + I G R + + G ++A+ LE ++
Sbjct: 152 LKDEDGWVRQSAADALGEI--GGERVRAAMEKLAETGTGFARKVAVN-----YLETHKSF 204
Query: 392 QHHE 395
HH
Sbjct: 205 NHHH 208
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 67.9 bits (166), Expect = 6e-13
Identities = 37/283 (13%), Positives = 76/283 (26%), Gaps = 54/283 (19%)
Query: 86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA 145
SN + A++ + ++ + DEL LDD N + + L
Sbjct: 2 SNTYQKRKASK-EYGLYNQCKKLNDDELFRL---------LDDHNSLKRISSARVLQLRG 51
Query: 146 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 205
+A+ ++ S + + + LG I ++ L
Sbjct: 52 G-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL----N 96
Query: 206 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDIC 265
+AL + + + + C+ +
Sbjct: 97 NMALNDKSACV--RATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATA 149
Query: 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 325
+A+S I+ D +P L+ LL + A + N DC +
Sbjct: 150 FAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFV 198
Query: 326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+ L + EA +S + R + +
Sbjct: 199 EM---------LQDKNEEVRIEAIIGLSYR--KDKRVLSVLCD 230
Score = 64.4 bits (157), Expect = 9e-12
Identities = 31/296 (10%), Positives = 79/296 (26%), Gaps = 58/296 (19%)
Query: 73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
K+ E+ + N R+ + R + ++ V + +E D+N
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGGQD------------AVRLAIEFCSDKNYI 69
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192
+ + L I + N L+ + A +
Sbjct: 70 RRDIGAFILGQIKICKKCEDNVFNILNN-----MALNDKSACVRATAIESTAQRCKKNPI 124
Query: 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
++ Q +T +R + + A +PLL L
Sbjct: 125 YSPKIV-----EQSQITA--FDKSTNVR--RATAFAISVINDKAT--------IPLLINL 167
Query: 253 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312
+ + + + +A++ ++ + VE+L + + A+ +
Sbjct: 168 LKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218
Query: 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+ V+ + L + V + + G+ + +
Sbjct: 219 R------KDKRVLSV-----LCDELKKNTV--YDDIIEAAGEL--GDKTLLPVLDT 259
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 65.9 bits (160), Expect = 2e-12
Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 22/203 (10%)
Query: 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-SSPHLNLA 176
V+ +ELLDD+ A + IA + + + K LL S + L
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT 87
Query: 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236
++ A G +A + L +P + A + T N+ +A+ + + NP
Sbjct: 88 QEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKT-KINVSYALEEIAKA-NP- 139
Query: 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296
+ + ++ + + E + + + + +PR++ LL
Sbjct: 140 ---MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-----FLPRIINLLH 191
Query: 297 SEETTILTAALRTVGNIATGNDH 319
+ + +A+ + ++AT ND
Sbjct: 192 DGDEIVRASAVEALVHLATLNDK 214
Score = 61.6 bits (149), Expect = 6e-11
Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 27/239 (11%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ ++IE + + A + + +L E + + L E
Sbjct: 34 LKKLIELLDDDLWTVVKNAISIIMVIA---KTRE--DLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
E A +A E + IP ++AL IA
Sbjct: 89 EIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
++ ++++ + I + N F+ + LP + L+H
Sbjct: 144 SIV-----RDFMSMLSSKNRED-KLTALNFIEAMGEN-----SFKYVNPFLPRIINLLHD 192
Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
D + AL +++ ++ + V+ + +E L+ + + + +
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245
Score = 37.4 bits (86), Expect = 0.005
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 263 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 322
DI AL+ I A D V+ +L+ELLD + T++ A+ + IA + +
Sbjct: 9 DIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE 68
Query: 323 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
+++ L + L S + + +E A + + +I
Sbjct: 69 PMLKK--LFSL--LKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 63.9 bits (156), Expect = 4e-12
Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 57/241 (23%)
Query: 75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQ 134
V I+ ++ + +R A + K+ + V ++ L DE+ +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER------------AVEPLIKALKDEDAWVR 62
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
A AL I A+ ++ L + + A ALG I RA
Sbjct: 63 RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DERAV 109
Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
+ L+ AL + F+R + A L + + L + +
Sbjct: 110 EPLIK--------ALKDED---WFVR--IAAAFALGEIGDER--------AVEPLIKALK 148
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
D AL I V + +L ++ A+ +
Sbjct: 149 DEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197
Query: 315 T 315
+
Sbjct: 198 S 198
Score = 53.9 bits (130), Expect = 1e-08
Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 56/244 (22%)
Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 171
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE 57
Query: 172 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231
+ A ALG I GD RA + L+ AL ++R A L +
Sbjct: 58 DAWVRRAAADALGQI-GD-ERAVEPLIK--------AL---KDEDGWVR--QSAAVALGQ 102
Query: 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291
+ + L + + D +AL I D V L
Sbjct: 103 IGDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPL 143
Query: 292 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351
++ L E+ + +A +G I M+KL + K A
Sbjct: 144 IKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
Query: 352 ISNI 355
+
Sbjct: 193 LETH 196
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 19/93 (20%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-------------------A 116
V +I+ +K + +R+ A + ++ + P+ + ++
Sbjct: 109 VEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 168
Query: 117 GVVPICVELLDDENPNTQFEATWALTNIASGTS 149
V +L + + A L S S
Sbjct: 169 RVRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 58.8 bits (143), Expect = 6e-11
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 26/125 (20%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ M N +R + + LS+ + L+E+ L +E+ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTA----LSRMGDEAFEPLLES---------LSNEDWRIRG 60
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
A W + N + A+ ++LL + A +L I G+ R R
Sbjct: 61 AAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--RVRA 107
Query: 196 LLLGL 200
+ L
Sbjct: 108 AMEKL 112
Score = 33.0 bits (76), Expect = 0.060
Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 35/155 (22%)
Query: 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 216
+++ + ++ + + + AL + G A + L + +L +
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM---GDEAFEPL--------LESLSNED--W 56
Query: 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276
W I N ++ + L +L+ S +L I
Sbjct: 57 RIRGAAAWIIGNF---QDER--------AVEPLIKLLEDDSGFVRSGAARSLEQIG---- 101
Query: 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
V + +L ++ A+ +
Sbjct: 102 -------GERVRAAMEKLAETGTGFARKVAVNYLE 129
Score = 30.0 bits (68), Expect = 0.64
Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 27/89 (30%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP-IDELIEA------------------ 116
++E + + + ++R A + + ++ LI+
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ 99
Query: 117 ----GVVPICVELLDDENPNTQFEATWAL 141
V +L + + A L
Sbjct: 100 IGGERVRAAMEKLAETGTGFARKVAVNYL 128
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 57.5 bits (138), Expect = 6e-09
Identities = 39/300 (13%), Positives = 99/300 (33%), Gaps = 23/300 (7%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P ++ M + +++ ++ + GVV C+ L D +P
Sbjct: 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVAT 471
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDG 190
+W + N+ +E T + I L+ + N A AL + +
Sbjct: 472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV-EY 530
Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTF-------------LRNIVWAISNLCRNKNPAP 237
A ++ + L++ + + K+P+
Sbjct: 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590
Query: 238 DFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296
+ + L +L+ D + D+ +A+S ++ + ++T P L++ L+
Sbjct: 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALN 649
Query: 297 SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA-WTISNI 355
++ + A+ + +I+ + A + + + + +K A +I
Sbjct: 650 QVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709
Score = 51.7 bits (123), Expect = 3e-07
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 177
V+ + + +N + A A +I G + T A+P L L++ L + E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 178 QATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234
W +G IA + + L G+ + L +Q + N W I NL
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGV--VQACLIGLQDHPKVA--TNCSWTIINLVEQLA 485
Query: 235 PAPDFEKIKICLPLLNQLIHTTD 257
A L++ LI +
Sbjct: 486 EATPSPIYNFYPALVDGLIGAAN 508
Score = 38.6 bits (89), Expect = 0.004
Identities = 41/320 (12%), Positives = 92/320 (28%), Gaps = 26/320 (8%)
Query: 59 ENVTVIEPTCMSPIKMTVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEA 116
E+ +S + +++G +S+ + +R+ A + L ++ E
Sbjct: 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN 223
Query: 117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLA 176
++ + E E+ Q A L I S + + + SP+ +A
Sbjct: 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283
Query: 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN-------- 228
I + L P ++ + N++ ++
Sbjct: 284 SMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDD 343
Query: 229 -----------LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 277
L + ++ L + Q I + A I DG +
Sbjct: 344 DWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK 402
Query: 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
+ +P ++ L++ + + +G IA Q ++ L
Sbjct: 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD--SVAESIDPQQHLPGVVQACL 460
Query: 338 S--SSRVNIVKEAAWTISNI 355
+ +WTI N+
Sbjct: 461 IGLQDHPKVATNCSWTIINL 480
>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
Length = 27
Score = 44.3 bits (104), Expect = 9e-07
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 25 RRKRCEMNVELRKAHKDDQLFKRRNID 51
RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNVS 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 49.4 bits (117), Expect = 2e-06
Identities = 38/300 (12%), Positives = 85/300 (28%), Gaps = 52/300 (17%)
Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
++ ++ + + +PN + + + NI + + A+ L+ L++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLAN 509
Query: 171 P---HLNLAEQATWALGN--IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225
+ AL I + L +P + L+ +TP
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI--QAVV 283
L ++E + L L N L+ +++ V
Sbjct: 570 QIKL------TDNYEAL---LALTN-----------------LASSETSDGEEVCKHIVS 603
Query: 284 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG------LQKMKKLL 337
+ L+ E + + L + N+ + + KLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENE 397
S V + A +NI I + +E L+ + +E + + +
Sbjct: 664 QLSDVESQRAVAAIFANIAT----TIPLIAKE--------LLTKKELIENAIQVFADQID 711
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 48.5 bits (115), Expect = 3e-06
Identities = 45/327 (13%), Positives = 89/327 (27%), Gaps = 57/327 (17%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
P +R A + + I +P+ L DE + +
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI----IPMFSNLASDEQDSVRL 221
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGAR 192
A A NIA ++ + A +P Q + + G
Sbjct: 222 LAVEACVNIAQLLPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278
Query: 193 ARDLLLGLGTMPQ-----------------ILALVQPNTPTTFLRNIVWAISNLCRNKNP 235
DL+ + + L + I+ I L + N
Sbjct: 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ 338
Query: 236 -------------APDFEK---IKICLPLLNQLIHTTDVETLSDICWALSYISD--GHND 277
+P K I+ LPL + E +I L +++ G
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ 398
Query: 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKK 335
Q+ ++P +VEL + + + A + + +A G + + +
Sbjct: 399 LSQS-----LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL-----CMA 448
Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQ 362
L I + A + + ++
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE 475
Score = 47.3 bits (112), Expect = 7e-06
Identities = 29/282 (10%), Positives = 87/282 (30%), Gaps = 26/282 (9%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ +I+ +++ + ++R+ + +K+ + ++ ++P + + DE+
Sbjct: 12 IAVLIDELRNEDVQLRLNS---IKKLSTIALALGVERTRSE-LLPFLTDTIYDEDE-VLL 66
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG--DGARA 193
L + +P L + + ++A +L I+ +
Sbjct: 67 ALAEQLGTFTTLVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL 123
Query: 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 253
+ L + L + T+ R + ++C + + ++ L
Sbjct: 124 EAHFVPL-----VKRLAGGDWFTS--RTSACGLFSVCYPRVSSAVKAEL---RQYFRNLC 173
Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
L + V + ++P L E+ ++ A+ NI
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355
A ++A + +++ + A + +
Sbjct: 231 A---QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL 269
Score = 38.5 bits (89), Expect = 0.005
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 7/112 (6%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P+++ N RM + + + +P + + D N +F
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHM----LPTVLRMAGDPVANVRF 537
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
+L I + + P +L +++ A AL ++
Sbjct: 538 NVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 34.2 bits (78), Expect = 0.086
Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+P ++ +R +S +K+ + + ++ PI +L D++ + ++
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVKY 576
Query: 136 EATWALTNIASG 147
A ALT ++
Sbjct: 577 FAQEALTVLSLA 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 7e-06
Identities = 56/336 (16%), Positives = 97/336 (28%), Gaps = 115/336 (34%)
Query: 15 KNAGKSFDEMRRKRCEMN-------VELRKAHKD--DQLFKRRNIDQLDEIEEENVTVIE 65
K ++ R+ N E + D +K N D+L I E ++ V+E
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLE 367
Query: 66 PTCM-------------SPIKMTVPEMI-EGMKSSNPKMRMIATRSARKMLSKERHPPID 111
P + I + +I + S+ ++ + + L E+ P
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLV-EKQP--- 421
Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQL-- 167
+ + I P+ E L N E + ++++ IPK
Sbjct: 422 ---KESTISI---------PSIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDD 463
Query: 168 LSSP------------HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 215
L P HL E R + L
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHP--------ERMTLFRMVFLDFR-------------- 501
Query: 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
FL KI+ N + TL + + YI D
Sbjct: 502 --FLEQ-------------------KIRHDSTAWNASGSILN--TLQQLKFYKPYICDND 538
Query: 276 ND---KIQAVVDTGVVPRLVE-LLDSEETTILTAAL 307
+ A++D +P++ E L+ S+ T +L AL
Sbjct: 539 PKYERLVNAILD--FLPKIEENLICSKYTDLLRIAL 572
Score = 46.8 bits (110), Expect = 1e-05
Identities = 75/535 (14%), Positives = 154/535 (28%), Gaps = 195/535 (36%)
Query: 8 IDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV---- 63
I+++ N + F + R + ++LR+A L + R +NV +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRP--------AKNVLIDGVL 159
Query: 64 --------------IEPTCMSP-----IKM-------TVPEMIEGM-------------K 84
+ C + + TV EM++ +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEA------ 137
SSN K+R+ + ++ + L K + L+ L + +N + A
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----------LLNVQNAKA-WNAFNLSCK 267
Query: 138 TWALT---NIASGTSEQTMTVINANAIPK----------FLQLLSSPHLNLAEQATWALG 184
T + S T T I+ + L+ L +L +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TT 325
Query: 185 N---IAGDGARARDLL--------LGLGTMPQI-------------------LALVQPNT 214
N ++ RD L + + I L++ P+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 215 --PTTFLRNIVWA---------ISNLCRN-----KNPAPDFEKI-----KICLPLLNQL- 252
PT L +++W + N K P I ++ + L N+
Sbjct: 386 HIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 253 IHTT-----------DVETLSD------ICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295
+H + D + L + + H I+ + + L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMV--FL 498
Query: 296 DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355
D L +R + + + Q L+ K I +
Sbjct: 499 DFR---FLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPY---------------ICDN 537
Query: 356 TAGNSRQID---HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
R ++ + + E N L+ + L ++ AL E+E ++++ +K +
Sbjct: 538 DPKYERLVNAILDFLPKIEEN---LICSKYTDLLRI-ALM-AEDEAIFEEAHKQV 587
Score = 34.8 bits (79), Expect = 0.065
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 25/131 (19%)
Query: 319 HQTDCVIQAGGLQ-KMKKLLSSSRVNIVKEA-AWTISNITAG--NSRQIDHVIQEG-ELN 373
H D + G Q + K +LS V + ++ + +IDH+I ++
Sbjct: 5 HHMD--FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 374 QMALLVEESGGLEKLEALQHHENETVY-------QKCYKIISMAFNDSAENSIENGDTIE 426
L L + E V + YK + E + T
Sbjct: 63 GTLRL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRM 111
Query: 427 FNPQPVNTVNG 437
+ Q N
Sbjct: 112 YIEQRDRLYND 122
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 45.6 bits (107), Expect = 1e-05
Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 11/207 (5%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ ++E + R+ A + ++L + ++E + + L EN
Sbjct: 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVF-INALSQENEKVTI 93
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
+A AL + + T + A + LL SP + + L +
Sbjct: 94 KALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV 151
Query: 196 LLLGLGTMPQILALVQPNTPTTFL--------RNIVWAISNLCRNKNPAPDFEKIKICLP 247
+ + FL + I + + + +++ L
Sbjct: 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALD 211
Query: 248 LLNQLIHTTDVETLSDICWALSYISDG 274
+L + + +E + +S I DG
Sbjct: 212 VLEKALSFPLLENVKIELLKISRIVDG 238
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 45.0 bits (106), Expect = 2e-05
Identities = 9/78 (11%), Positives = 34/78 (43%)
Query: 76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
++E + + NP ++ + L++ + +++ + + V+ L++ +P +
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194
Query: 136 EATWALTNIASGTSEQTM 153
+ AL + ++ +
Sbjct: 195 SSAEALGTLIKLMGDKAV 212
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 44.4 bits (104), Expect = 6e-05
Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 23/264 (8%)
Query: 49 NIDQLDEIEEENVTVIEPTCMSPIKMTVPEMI---------EGMKSSNPKMR---MIATR 96
D I + N+ + + + + E + ++ ++
Sbjct: 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 384
Query: 97 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI 156
+ + + P + E ++P ++ L D+ + W L+ A Q
Sbjct: 385 AIAEGCMQGMIPYLPE-----LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 439
Query: 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 216
+ + L+ + + + E A A + + +L+ L + L
Sbjct: 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQH 497
Query: 217 TFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTT--DVETLSDICWALSYISD 273
L + AI L + + + I++ +P L Q + + + L + LS ++
Sbjct: 498 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557
Query: 274 GHNDKIQAVVDTGVVPRLVELLDS 297
+ V R V L+
Sbjct: 558 ALQSGFLPYCEP-VYQRCVNLVQK 580
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 44.5 bits (104), Expect = 6e-05
Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 11/222 (4%)
Query: 22 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
DE+ + E + D + +Q E + + ++ VP + +
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA----LQYLVPILTQ 328
Query: 82 GMKSSNPK---MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT 138
+ + ++A L D+++ V+P E + + + + A
Sbjct: 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAV 387
Query: 139 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 198
A I G + + A+P ++L+ P + + + A W +G I A +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447
Query: 199 GL-GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239
L + ++ + N+ WA S+L A D
Sbjct: 448 YLAPLLQCLIEGLSAEPRVA--SNVCWAFSSLAEAAYEAADV 487
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 42.9 bits (100), Expect = 1e-04
Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 8/169 (4%)
Query: 22 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
DE+ + E + D + +Q E + + ++ VP + +
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA----LQYLVPILTQ 328
Query: 82 GMKSSNPKMRMI---ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT 138
+ + ++A L D+++ V+P E + + + + A
Sbjct: 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAV 387
Query: 139 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
A I G + + A+P ++L+ P + + + A W +G I
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Score = 31.7 bits (71), Expect = 0.43
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 51 DQLDEIEEENVTVIEPTCMSPIKMTVPEMI---------EGMKSSNPKMRMIATRSARKM 101
D+ D+ ++ N C+ + + I E +K+ + + R A A
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV-MAFGC 392
Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-TVINANA 160
+ + P + + +P +EL+ D + + A W + I E + V A
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 161 IPKFLQLLSS 170
+ ++ LS+
Sbjct: 453 LQCLIEGLSA 462
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 42.0 bits (99), Expect = 4e-04
Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 65/343 (18%)
Query: 73 KMTVPEMIE--------GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
+ V ++ E +K +P +R A K+ + + G + +
Sbjct: 112 CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH---DINA-QMVEDQGFLDSLRD 167
Query: 125 LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG 184
L+ D NP A AL+ I+ + +N I K L L+ W
Sbjct: 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-------TEWGQI 220
Query: 185 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 244
I L L+ P ++I ++ + N A +K+
Sbjct: 221 FI-----------LDC------LSNYNPKDDRE-AQSICERVTPRLSHANSAVVLSAVKV 262
Query: 245 CLPLLNQLIHTTDVET--LSDICWALSYISDGHNDKIQAVV----------DTGVVPRLV 292
+ L L +D L + L + G + +Q V ++ + +
Sbjct: 263 LMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPE-VQYVALRNINLIVQKRPEILKQEI 321
Query: 293 E---LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
+ + ++ + L + +A + V L ++K+ + V+ V++A
Sbjct: 322 KVFFVKYNDPIYVKLEKLDIMIRLA--SQANIAQV-----LAELKEYATEVDVDFVRKAV 374
Query: 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392
I + + + + + L++ EA+
Sbjct: 375 RAIGRCAIKVEQSAERCV-----STLLDLIQTKVNYVVQEAIV 412
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 38.5 bits (89), Expect = 0.003
Identities = 24/243 (9%), Positives = 74/243 (30%), Gaps = 29/243 (11%)
Query: 72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENP 131
+ + + + M R A R+ ++ I+ ++ + + D+ P
Sbjct: 102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMK--------QAIVDKVP 153
Query: 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 191
+ A + ++ + + + + + SS ++ + A L ++ +
Sbjct: 154 SVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208
Query: 192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 251
A ++ + + F ++ + + D + +
Sbjct: 209 LAVSKMISK--------FTRHGLKSPFAYCMMI---RVASRQLEDEDGSRDSPLFDFIES 257
Query: 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
+ + + A+ + ++ V L S + + AA+RT+
Sbjct: 258 CLRNKHEMVVYEAASAIVNLPGCSAKELAP-----AVSVLQLFCSSPKAALRYAAVRTLN 312
Query: 312 NIA 314
+A
Sbjct: 313 KVA 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.004
Identities = 52/388 (13%), Positives = 108/388 (27%), Gaps = 144/388 (37%)
Query: 107 HPPIDELIEAGVVPICVELL-DDENPNTQFEA-----TWALTNIASGTSEQTMTVINANA 160
H + +LI+ EL+ + F W L N ++ + + I +
Sbjct: 181 HVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSI-PIS 237
Query: 161 IPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQ--ILALV--QPNTP 215
P + ++ H + A+ + G + R L G Q + A+ + ++
Sbjct: 238 CP-LIGVIQLAHYVVTAKLLGFTPGEL-------RSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 216 TTFLRNIVWAISNL----CR----------------------NKNPAP-------DFEKI 242
+F ++ AI+ L R P+P E++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 243 ---------------KICLPLLN---QLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 284
++ + L+N L+ + ++L + L K + +D
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL------RKAKAPSGLD 403
Query: 285 -----------------------------TGVVPRLVELLDSEETTILTAALR-TVGNIA 314
+ + L + ++ V +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVN-IVKEAA-W---TISNITAGNSRQIDHVIQE 369
G+D L+ + +S V+ I++ W T T H++
Sbjct: 464 DGSD-----------LRVLSGSISERIVDCIIRLPVKWETTTQFKAT--------HILDF 504
Query: 370 GELNQMALLVEESGGLEKLEALQHHENE 397
G GG L L H +
Sbjct: 505 G-----------PGGASGLGVLTHRNKD 521
Score = 31.2 bits (70), Expect = 0.88
Identities = 45/302 (14%), Positives = 89/302 (29%), Gaps = 110/302 (36%)
Query: 5 VAAIDRKASFKNAGKSFDEMRRKRCEMNVE------LRKAHKDDQLFKRRNIDQLDEIEE 58
+A D SF + + + +R + + + ++ I E
Sbjct: 283 IAETDSWESFFVSVRKA-----------ITVLFFIGVR-CY---EAYPNTSLPP--SILE 325
Query: 59 ENVTVIE--PTCMSPIK-MTVPEMIEGMKSSN----------------PKMRMIA----- 94
+++ E P+ M I +T ++ + + +N K +++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 95 ----TRSARKML-------SK----ERHP-------PIDE------LIEAGVVPICVELL 126
+ RK S+ ER P+ L+ A +L+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA------SDLI 439
Query: 127 --DDENPNTQFEAT-WALT--NIASGTSEQTMTVINANAIPKFLQLLSSPHLN----LAE 177
D N F A + + G + V++ + + + + +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 178 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 237
+AT L D G G + L N T +R IV L + NP
Sbjct: 497 KATHIL-----------DF--GPGGASGLGVLTHRNKDGTGVRVIV--AGTL--DINPDD 539
Query: 238 DF 239
D+
Sbjct: 540 DY 541
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 36.6 bits (84), Expect = 0.009
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 53 LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP--I 110
L I + + + + +++E MK P++RM T+ + +E+ +
Sbjct: 128 LLTICKYYDPLASSGRNEDM---LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184
Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 153
++ VVPI +++++D P + + + T
Sbjct: 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.023
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 5 VAAIDRKASFKNAGKSFDEMRRKRCE--------MNVELR-KAHKD-DQLFKRRNIDQLD 54
+A DR + + + E +RKR + M E R KA KD ++ +R++ +Q++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS-EQVE 132
Query: 55 EIEEEN 60
+ + N
Sbjct: 133 KNKINN 138
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 35.1 bits (80), Expect = 0.043
Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 22/183 (12%)
Query: 236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVE 293
F K + + LL L+ D L+ + ++Q ++ V RL++
Sbjct: 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173
Query: 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV----NIVKEAA 349
LL I + + + N V +++ +++ +V++
Sbjct: 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233
Query: 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVY---QKCYKI 406
+ N+ N+ NQ E +++++ +E QK +
Sbjct: 234 ILLQNLLKNNN-----------SNQNFFK--EGSYIQRMKPWFEVGDENSGWSAQKVTNL 280
Query: 407 ISM 409
M
Sbjct: 281 HLM 283
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 34.9 bits (79), Expect = 0.055
Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 7/242 (2%)
Query: 65 EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
P S + + + ++ M+S+ P ++E + E
Sbjct: 386 SPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE 445
Query: 125 LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG 184
+ D + ++ + +I + + + WA+G
Sbjct: 446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNG-TEWSWKNLNTLCWAIG 504
Query: 185 NIAGDGARARDLLLGLGTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFE 240
+I+G + + + +L L + + NI++ + R F
Sbjct: 505 SISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF- 563
Query: 241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 300
+K + L + +H T C I+ V V+P + E+L++ T
Sbjct: 564 -LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 622
Query: 301 TI 302
I
Sbjct: 623 II 624
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 34.5 bits (79), Expect = 0.064
Identities = 35/299 (11%), Positives = 94/299 (31%), Gaps = 32/299 (10%)
Query: 76 VPEMIEGMKSSNPK--MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT 133
E+ + + + + ++ A ++ P D + V LL+D++
Sbjct: 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRT--SP--DLVPMGDWTSRVVHLLNDQHLGV 203
Query: 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE------QATWALGNI- 186
AT +T +A + + + A+ + ++++S +L + A W +
Sbjct: 204 VTAATSLITTLAQ-KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLL 262
Query: 187 -------AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAP 237
+ R L A P + N A+ + +
Sbjct: 263 RLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS 322
Query: 238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 297
+ + L Q + + ++ ++ ++ V T + + L
Sbjct: 323 EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA--SSEFSHEAVKTHIETVINALKTE 380
Query: 298 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 356
+ ++ A+ + + D I + +M L ++ +I +E ++ +
Sbjct: 381 RDVSVRQRAVDLLYAMC---DRSNAQQI----VAEMLSYLETADYSIREEIVLKVAILA 432
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA
binding protein, structural genomics, NPPSFA; 1.80A
{Pyrococcus horikoshii} PDB: 1s04_A
Length = 109
Score = 28.6 bits (64), Expect = 1.4
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 405 KIISMAFNDSAENSIENGDTIEFNPQPVNT 434
K I D I+ GD I F +
Sbjct: 20 KKIEGRLYDEKRRQIKPGDIIIFEGGKLKV 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.7
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 20/48 (41%)
Query: 381 ESGGLEKLEA-LQHHENETVYQKCYKIISMAFNDSAEN-SIENGDTIE 426
E L+KL+A L K Y +DSA +I T+E
Sbjct: 18 EKQALKKLQASL----------KLYA------DDSAPALAI-KA-TME 47
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain);
lyase(carbon-carbon), lyase; HET: CAP; 2.20A
{Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Length = 109
Score = 27.7 bits (61), Expect = 2.7
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 87 NPKMRMIATRSARKMLSKER-HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA 145
PK R T S LS + I+ +IE G P +E + NP + W L A
Sbjct: 5 LPKERRFETFSYLPPLSDRQIAAQIEYMIEQGFHP-LIEFNEHSNPEEFYWTMWKLPLFA 63
Query: 146 SGTSEQTMTVINA 158
+Q + +
Sbjct: 64 CAAPQQVLDEVRE 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 29.1 bits (64), Expect = 3.3
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNI 144
+SN +I A K + R+ + ++PI L + A + I
Sbjct: 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-LMPILATFLQTDEYVVYTYAAITIEKI 523
Query: 145 --ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQA 179
++ + + I ++L + L +
Sbjct: 524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 28.7 bits (64), Expect = 4.0
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
+ + + ++ A L +++ PP+ L +AG + L D NP T
Sbjct: 283 ETGAKALAKAGTVAVLLPG--AFYALREKQLPPVQALRDAGA---EIALATDCNPGTSP 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,586,783
Number of extensions: 399437
Number of successful extensions: 1610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 136
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.1 bits)