BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9170
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SJQ|A Chain A, Nmr Structure Of Rrm1 From Human Polypyrimidine Tract
           Binding Protein Isoform 1 (Ptb1)
          Length = 105

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 54  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 103


>pdb|2AD9|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
           Rbd1 Complexed With Cucucu Rna
          Length = 119

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           QAF+EM  E AA+TMV Y+T+    LRG+ +Y+QFSNHKELKTD + + A
Sbjct: 69  QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQA 118


>pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like
           Protein L
          Length = 101

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSN 56
           QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKT    S 
Sbjct: 53  QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTSGPSSG 101


>pdb|1X4D|A Chain A, Solution Structure Of Rrm Domain In Matrin 3
          Length = 102

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 8   QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS-NHKELKTDQT 53
           +AF+EMA    A   V Y+TT  A + G+ V V  S  +K +K+  +
Sbjct: 54  EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKSGPS 100


>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus
 pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
 pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
          Length = 634

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 7   IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           + A LE      +S + + F    ++L   A+Y QFSN + L  D++ ++A
Sbjct: 489 LTAQLEFPASARSSPLQSGFEILASELERTAIYYQFSN-ESLVVDRSQTSA 538


>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
 pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With 1-Kestose
 pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja Complex With Nystose
 pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja
 pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With Raffinose
          Length = 634

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 7   IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNA 57
           + A LE      +S + + F    ++L   A+Y QFSN + L  D++ ++A
Sbjct: 489 LTAQLEFPASARSSPLQSGFEILASELERTAIYYQFSN-ESLVVDRSQTSA 538


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,462,454
Number of Sequences: 62578
Number of extensions: 70919
Number of successful extensions: 163
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)