BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9170
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAF+EM+ E AA+TMV Y+T+ LRG+ +Y+QFSNHKELKTD +
Sbjct: 95 QAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS 140
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAF+EM E AA+TMV Y+T+ LRG+ +Y+QFSNHKELKTD +
Sbjct: 96 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAF+EM E AA+TMV Y+T+ LRG+ +Y+QFSNHKELKTD +
Sbjct: 96 QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAF+EM E AA+TMV Y+T+ LRG+ +Y+QFSNHKELKTD +
Sbjct: 96 QAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS 141
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAF+EM E AA+TMV Y+T+ LRG+ +Y+QFSNHKELKTD +
Sbjct: 95 QAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDSS 140
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
QAFLEMA E AA TMV Y+T LR + VY+Q+SNH+ELKTD
Sbjct: 96 QAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTD 139
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
QAFLEMA E AA TM+ Y+T LR + VY+Q+SNH+ELKTD
Sbjct: 67 QAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTD 110
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51
QAFLEMA E AA TM+ Y+T LR + VY+Q+SNH+ELKTD
Sbjct: 67 QAFLEMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTD 110
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAFLE+A E AA TMV Y++ LR + +Y+Q+SNHKELKTD T
Sbjct: 96 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNT 141
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAFLE+A E AA TMV Y++ LR + +Y+Q+SNHKELKTD T
Sbjct: 96 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNT 141
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQT 53
QAFLE+A E AA TMV Y++ LR + +Y+Q+SNHKELKTD T
Sbjct: 96 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNT 141
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50
QA L+M D +A + + +FT +RGR VYVQFS+H+EL T
Sbjct: 43 QALLQMQDVSSAVSALQFFTNVQPTIRGRNVYVQFSSHQELTT 85
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 8 QAFLEMADECAASTMVTYFTTCV--AQLRGRAVYVQFSNHKELKTDQT 53
QAF+E AD A +MV+Y+ + AQ+RG+ VY+Q+SN E+ +Q+
Sbjct: 56 QAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQS 103
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 8 QAFLEMADECAASTMVTYFTTCV--AQLRGRAVYVQFSNHKELKTDQTHSNAL--LLHLT 63
QAF+E D A M++Y+ + AQ+RG+ VY+Q+SN +E+ ++T ++ + +L +T
Sbjct: 57 QAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVT 116
Query: 64 I-GIILRPATHYQVHLIRSA 82
I G R + +HL+ SA
Sbjct: 117 IEGDDARMVSIDVLHLVFSA 136
>sp|E9PT37|RBM20_RAT RNA-binding protein 20 OS=Rattus norvegicus GN=Rbm20 PE=2 SV=1
Length = 1207
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQTHSN 56
QAFLEMA AA MV Y+ A + G + ++ S +KEL+ + N
Sbjct: 559 QAFLEMAYTEAAQAMVQYYQEKPALINGEKLLIRMSTRYKELQLKKPGKN 608
>sp|Q3UQS8|RBM20_MOUSE RNA-binding protein 20 OS=Mus musculus GN=Rbm20 PE=1 SV=3
Length = 1199
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQTHSN 56
QAFLEMA AA MV Y+ A + G + ++ S +KEL+ + N
Sbjct: 558 QAFLEMAYTEAAQAMVQYYQEKPAIINGEKLLIRMSTRYKELQLKKPGKN 607
>sp|Q5T481|RBM20_HUMAN RNA-binding protein 20 OS=Homo sapiens GN=RBM20 PE=1 SV=3
Length = 1227
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELK 49
QAFLEMA AA MV Y+ A + G + ++ S +KEL+
Sbjct: 556 QAFLEMAYTEAAQAMVQYYQEKSAVINGEKLLIRMSKRYKELQ 598
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,824,031
Number of Sequences: 539616
Number of extensions: 930100
Number of successful extensions: 1925
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 17
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)