Query psy9170
Match_columns 94
No_of_seqs 110 out of 213
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:40:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r27_A HnRNP L, heterogeneous 99.3 2E-12 6.9E-17 84.5 5.6 47 3-49 54-100 (100)
2 2cq1_A PTB-like protein L; RRM 98.9 1.9E-09 6.4E-14 69.6 5.6 49 4-52 49-97 (101)
3 1x4d_A Matrin 3; structural ge 98.9 1.7E-09 5.8E-14 70.2 5.3 50 3-52 49-99 (102)
4 1wex_A Hypothetical protein (r 98.9 2.2E-09 7.4E-14 69.5 4.6 49 4-52 49-97 (104)
5 2e5i_A Heterogeneous nuclear r 98.9 4.4E-09 1.5E-13 70.6 6.1 49 43-91 5-57 (124)
6 2ad9_A Polypyrimidine tract-bi 98.8 2.5E-09 8.4E-14 71.5 4.0 52 4-55 65-116 (119)
7 1sjq_A Polypyrimidine tract-bi 98.8 3E-09 1E-13 69.8 3.7 51 4-54 50-100 (105)
8 3tyt_A Heterogeneous nuclear r 98.6 1.3E-07 4.3E-12 67.0 8.0 78 5-86 41-150 (205)
9 1x4f_A Matrin 3; structural ge 98.5 6E-08 2.1E-12 64.0 3.7 43 4-46 60-102 (112)
10 1fxl_A Paraneoplastic encephal 98.5 5.7E-07 1.9E-11 58.9 8.3 77 6-91 44-120 (167)
11 3md3_A Nuclear and cytoplasmic 98.5 1.1E-06 3.6E-11 57.6 9.1 81 5-92 40-120 (166)
12 1b7f_A Protein (SXL-lethal pro 98.5 8.3E-07 2.9E-11 58.5 8.3 77 6-91 45-121 (168)
13 2yh0_A Splicing factor U2AF 65 98.5 1.3E-06 4.3E-11 59.1 9.2 83 4-91 49-146 (198)
14 1fje_B Nucleolin RBD12, protei 98.5 1.8E-06 6E-11 57.6 9.7 78 4-89 52-129 (175)
15 2g4b_A Splicing factor U2AF 65 98.5 1.7E-06 5.7E-11 57.3 9.4 78 4-91 49-126 (172)
16 1l3k_A Heterogeneous nuclear r 98.4 1.3E-06 4.3E-11 59.1 8.6 81 6-91 55-136 (196)
17 3zzy_A Polypyrimidine tract-bi 98.4 4.8E-07 1.6E-11 61.3 5.2 38 53-90 22-59 (130)
18 2adc_A Polypyrimidine tract-bi 98.3 4.9E-06 1.7E-10 58.7 9.2 82 6-91 72-184 (229)
19 1qm9_A Polypyrimidine tract-bi 98.3 2.4E-06 8.3E-11 58.3 7.3 81 6-90 41-152 (198)
20 3pgw_A U1-A; protein-RNA compl 98.3 6.2E-06 2.1E-10 59.2 9.6 42 4-47 50-91 (282)
21 3sde_A Paraspeckle component 1 98.3 5.9E-06 2E-10 59.5 9.5 73 4-91 56-128 (261)
22 3smz_A Protein raver-1, ribonu 98.2 9E-06 3.1E-10 58.4 9.7 74 3-91 54-127 (284)
23 2qfj_A FBP-interacting repress 98.2 3E-06 1E-10 58.0 6.3 83 5-91 69-157 (216)
24 2ghp_A U4/U6 snRNA-associated 98.2 8.2E-06 2.8E-10 58.8 8.8 82 5-90 158-242 (292)
25 3nmr_A Cugbp ELAV-like family 98.2 5.3E-06 1.8E-10 54.8 6.6 82 4-91 45-127 (175)
26 3smz_A Protein raver-1, ribonu 98.2 9E-06 3.1E-10 58.4 8.1 80 6-91 137-217 (284)
27 4f02_A Polyadenylate-binding p 98.1 6.9E-06 2.4E-10 57.4 7.1 80 5-91 56-135 (213)
28 2cjk_A Nuclear polyadenylated 98.0 4.6E-06 1.6E-10 54.9 3.2 74 5-89 44-117 (167)
29 1sjr_A Polypyrimidine tract-bi 97.9 1.5E-05 5.1E-10 55.9 5.0 38 54-91 41-78 (164)
30 2ghp_A U4/U6 snRNA-associated 97.9 3.6E-05 1.2E-09 55.4 7.2 68 5-89 80-148 (292)
31 3zzy_A Polypyrimidine tract-bi 97.7 5.9E-05 2E-09 50.9 5.9 43 7-51 67-111 (130)
32 2lkz_A RNA-binding protein 5; 97.7 6.1E-05 2.1E-09 47.5 5.5 40 6-45 53-94 (95)
33 2lxi_A RNA-binding protein 10; 97.7 5.8E-05 2E-09 46.6 5.1 41 5-46 43-83 (91)
34 3md1_A Nuclear and cytoplasmic 97.5 0.00015 5.3E-09 42.9 4.5 39 6-46 43-81 (83)
35 2cqb_A Peptidyl-prolyl CIS-tra 97.5 0.00024 8.2E-09 43.8 5.4 45 5-51 53-97 (102)
36 2i2y_A Fusion protein consists 97.5 0.00021 7.2E-09 47.3 5.3 82 5-91 12-105 (150)
37 2e5i_A Heterogeneous nuclear r 97.4 0.00017 5.8E-09 48.0 4.5 43 8-50 64-106 (124)
38 3mdf_A Peptidyl-prolyl CIS-tra 97.4 0.00026 9.1E-09 42.1 4.7 38 5-44 48-85 (85)
39 1x5t_A Splicing factor 3B subu 97.4 0.00035 1.2E-08 42.5 5.4 42 5-48 47-88 (96)
40 2x1f_A MRNA 3'-END-processing 97.4 0.00032 1.1E-08 43.0 5.2 43 6-50 44-86 (96)
41 2a3j_A U1 small nuclear ribonu 97.4 0.00015 5E-09 48.1 3.8 42 4-47 70-111 (127)
42 2fc9_A NCL protein; structure 97.4 0.00034 1.2E-08 43.1 5.3 41 5-47 52-92 (101)
43 3bs9_A Nucleolysin TIA-1 isofo 97.4 0.00026 8.9E-09 42.3 4.5 39 6-46 48-86 (87)
44 1sjr_A Polypyrimidine tract-bi 97.3 0.00022 7.7E-09 49.9 4.5 45 6-50 84-128 (164)
45 2e44_A Insulin-like growth fac 97.3 0.00029 9.9E-09 43.0 4.5 43 3-47 51-93 (96)
46 1nu4_A U1A RNA binding domain; 97.3 0.00038 1.3E-08 42.4 5.0 40 5-46 50-89 (97)
47 2e5h_A Zinc finger CCHC-type a 97.3 0.00046 1.6E-08 41.8 5.3 37 6-44 58-94 (94)
48 4fxv_A ELAV-like protein 1; RN 97.3 0.0003 1E-08 44.1 4.6 37 6-44 61-97 (99)
49 2cqi_A Nucleolysin TIAR; RNA r 97.3 0.00051 1.8E-08 42.4 5.6 43 5-49 54-96 (103)
50 2fc8_A NCL protein; structure 97.3 0.00029 1E-08 43.4 4.4 39 6-46 54-92 (102)
51 1x4h_A RNA-binding protein 28; 97.3 0.00038 1.3E-08 43.4 4.9 43 5-47 56-102 (111)
52 2cqc_A Arginine/serine-rich sp 97.3 0.00039 1.3E-08 42.1 4.5 38 6-45 57-94 (95)
53 2dgt_A RNA-binding protein 30; 97.2 0.00065 2.2E-08 41.2 5.3 41 6-48 44-84 (92)
54 1x5p_A Negative elongation fac 97.2 0.00081 2.8E-08 41.3 5.8 43 4-48 47-89 (97)
55 2cq3_A RNA-binding protein 9; 97.2 0.00084 2.9E-08 41.5 5.8 44 6-51 55-98 (103)
56 2err_A Ataxin-2-binding protei 97.2 0.00044 1.5E-08 43.7 4.5 40 6-47 69-108 (109)
57 2cpj_A Non-POU domain-containi 97.2 0.00035 1.2E-08 43.1 3.9 42 4-47 49-90 (99)
58 2xnq_A Nuclear polyadenylated 97.2 0.00071 2.4E-08 42.0 5.3 39 6-46 57-95 (97)
59 2ek1_A RNA-binding protein 12; 97.2 0.00045 1.6E-08 41.9 4.3 38 6-45 57-94 (95)
60 2cpx_A Hypothetical protein FL 97.2 0.0004 1.4E-08 43.7 4.1 45 4-50 65-109 (115)
61 2cpe_A RNA-binding protein EWS 97.2 0.00063 2.2E-08 42.7 5.1 41 6-48 65-105 (113)
62 1whw_A Hypothetical protein ri 97.2 0.00072 2.4E-08 41.4 5.2 42 5-48 49-90 (99)
63 2cpi_A CCR4-NOT transcription 97.2 0.00064 2.2E-08 43.0 5.0 40 6-47 63-102 (111)
64 1fjc_A Nucleolin RBD2, protein 97.2 0.00049 1.7E-08 42.0 4.3 40 5-46 52-91 (96)
65 2cpf_A RNA binding motif prote 97.2 0.00046 1.6E-08 42.2 4.1 42 6-49 50-91 (98)
66 4a8x_A RNA-binding protein wit 97.2 0.00061 2.1E-08 40.6 4.6 39 5-45 46-84 (88)
67 2cpy_A RNA-binding protein 12; 97.2 0.00054 1.8E-08 43.6 4.6 43 5-50 56-98 (114)
68 2dnz_A Probable RNA-binding pr 97.2 0.00047 1.6E-08 41.8 4.1 41 6-48 47-87 (95)
69 2do4_A Squamous cell carcinoma 97.2 0.00043 1.5E-08 42.6 4.0 39 6-46 58-96 (100)
70 1why_A Hypothetical protein ri 97.2 0.00057 1.9E-08 41.9 4.5 41 4-46 51-93 (97)
71 2kt5_A RNA and export factor-b 97.2 0.00073 2.5E-08 43.2 5.2 44 5-50 75-118 (124)
72 2ywk_A Putative RNA-binding pr 97.2 0.00047 1.6E-08 41.9 4.0 38 6-45 57-94 (95)
73 1x5s_A Cold-inducible RNA-bind 97.2 0.00037 1.3E-08 43.0 3.6 42 5-48 53-94 (102)
74 2ytc_A PRE-mRNA-splicing facto 97.1 0.00053 1.8E-08 40.8 4.2 40 4-44 46-85 (85)
75 2d9p_A Polyadenylate-binding p 97.1 0.00045 1.5E-08 42.7 3.9 44 5-50 54-97 (103)
76 1wg1_A KIAA1579 protein, homol 97.1 0.00056 1.9E-08 41.4 4.3 43 4-48 38-80 (88)
77 1oo0_B CG8781-PA, drosophila Y 97.1 0.00087 3E-08 41.9 5.2 39 6-46 68-106 (110)
78 2dis_A Unnamed protein product 97.1 0.00057 2E-08 42.5 4.3 44 4-47 50-93 (109)
79 3ulh_A THO complex subunit 4; 97.1 0.00064 2.2E-08 42.2 4.5 38 6-45 70-107 (107)
80 2cph_A RNA binding motif prote 97.1 0.00061 2.1E-08 42.2 4.4 42 5-48 57-99 (107)
81 2cpd_A Apobec-1 stimulating pr 97.1 0.00087 3E-08 41.2 5.1 40 6-47 51-90 (99)
82 2diu_A KIAA0430 protein; struc 97.1 0.00031 1.1E-08 45.6 3.1 37 7-45 47-83 (96)
83 2dgs_A DAZ-associated protein 97.1 0.00085 2.9E-08 41.2 4.9 43 5-50 51-93 (99)
84 2dgo_A Cytotoxic granule-assoc 97.1 0.00099 3.4E-08 41.9 5.3 43 6-50 57-99 (115)
85 2cqh_A IGF-II mRNA-binding pro 97.1 0.00071 2.4E-08 41.1 4.5 43 5-48 43-85 (93)
86 2dgu_A Heterogeneous nuclear r 97.1 0.00097 3.3E-08 41.3 5.2 43 6-50 45-87 (103)
87 1whx_A Hypothetical protein ri 97.1 0.00049 1.7E-08 43.8 3.8 46 3-50 43-88 (111)
88 1wi8_A EIF-4B, eukaryotic tran 97.1 0.0011 3.6E-08 41.1 5.3 39 6-47 57-95 (104)
89 1x4g_A Nucleolysin TIAR; struc 97.1 0.001 3.6E-08 41.6 5.3 43 4-48 59-101 (109)
90 2cqp_A RNA-binding protein 12; 97.1 0.00076 2.6E-08 41.2 4.5 38 6-45 57-94 (98)
91 3egn_A RNA-binding protein 40; 97.1 0.00076 2.6E-08 44.2 4.7 41 4-46 90-130 (143)
92 2cq0_A Eukaryotic translation 97.1 0.00081 2.8E-08 41.5 4.6 41 6-48 57-97 (103)
93 1fj7_A Nucleolin RBD1, protein 97.1 0.00071 2.4E-08 41.6 4.3 40 5-47 57-96 (101)
94 1x4a_A Splicing factor, argini 97.1 0.0011 3.7E-08 41.5 5.1 40 6-47 61-100 (109)
95 2dnq_A RNA-binding protein 4B; 97.1 0.00064 2.2E-08 41.1 3.9 41 6-48 42-82 (90)
96 2cpz_A CUG triplet repeat RNA- 97.0 0.00087 3E-08 42.3 4.7 43 6-50 67-109 (115)
97 2dgx_A KIAA0430 protein; RRM d 97.0 0.0012 4E-08 40.7 5.1 39 6-46 52-90 (96)
98 2hvz_A Splicing factor, argini 97.0 0.00083 2.9E-08 41.3 4.5 42 5-48 36-77 (101)
99 2la4_A Nuclear and cytoplasmic 97.0 0.00051 1.7E-08 42.3 3.4 40 4-45 61-100 (101)
100 2la6_A RNA-binding protein FUS 97.0 0.0005 1.7E-08 42.3 3.4 37 6-44 63-99 (99)
101 1jmt_A Splicing factor U2AF 35 97.0 0.00078 2.7E-08 42.8 4.3 37 5-43 67-103 (104)
102 1x4b_A Heterogeneous nuclear r 97.0 0.0012 4E-08 41.7 5.2 40 5-47 68-107 (116)
103 2dgw_A Probable RNA-binding pr 97.0 0.00084 2.9E-08 40.6 4.2 38 6-46 50-87 (91)
104 2e5j_A Methenyltetrahydrofolat 97.0 0.0007 2.4E-08 41.6 3.9 42 3-46 53-94 (97)
105 2dnp_A RNA-binding protein 14; 97.0 0.0012 4.3E-08 39.8 5.0 40 6-47 43-82 (90)
106 4f25_A Polyadenylate-binding p 97.0 0.00097 3.3E-08 42.5 4.7 40 6-47 45-84 (115)
107 3s6e_A RNA-binding protein 39; 97.0 0.00048 1.6E-08 45.0 3.2 44 5-50 54-97 (114)
108 2jvo_A Nucleolar protein 3; nu 97.0 0.001 3.6E-08 42.1 4.7 39 6-46 65-103 (108)
109 1x5u_A Splicing factor 3B subu 97.0 0.00067 2.3E-08 42.0 3.7 42 5-48 56-97 (105)
110 2khc_A Testis-specific RNP-typ 97.0 0.00075 2.6E-08 42.6 4.0 37 6-44 82-118 (118)
111 3s8s_A Histone-lysine N-methyl 97.0 0.00078 2.7E-08 43.1 4.0 39 6-46 48-86 (110)
112 2pe8_A Splicing factor 45; RRM 97.0 0.0015 5.3E-08 41.6 5.4 44 4-49 54-97 (105)
113 2dnm_A SRP46 splicing factor; 97.0 0.00057 1.9E-08 42.3 3.2 42 5-48 54-95 (103)
114 1fje_B Nucleolin RBD12, protei 97.0 0.0015 5.2E-08 43.1 5.4 41 4-46 134-174 (175)
115 1p27_B RNA-binding protein 8A; 96.9 0.00061 2.1E-08 42.2 3.2 39 6-46 65-103 (106)
116 2do0_A HnRNP M, heterogeneous 96.9 0.0012 4.1E-08 41.3 4.6 42 6-49 56-97 (114)
117 2fy1_A RNA-binding motif prote 96.9 0.0012 4.2E-08 42.2 4.6 44 5-50 47-90 (116)
118 3v4m_A Splicing factor U2AF 65 96.9 0.002 6.8E-08 41.0 5.5 43 4-48 57-99 (105)
119 2cq2_A Hypothetical protein LO 96.9 0.0017 5.7E-08 42.7 5.2 47 3-49 60-109 (114)
120 3md3_A Nuclear and cytoplasmic 96.9 0.0013 4.4E-08 42.6 4.6 37 6-44 129-165 (166)
121 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.8 0.0018 6.3E-08 41.6 5.0 37 5-43 104-140 (140)
122 2cqd_A RNA-binding region cont 96.8 0.0018 6.1E-08 40.8 4.8 41 5-48 58-98 (116)
123 2bz2_A Negative elongation fac 96.8 0.0014 4.9E-08 42.5 4.3 42 4-47 71-112 (121)
124 1wf1_A RNA-binding protein RAL 96.8 0.0013 4.5E-08 41.2 4.0 41 5-47 61-101 (110)
125 1u6f_A Tcubp1, RNA-binding pro 96.8 0.0011 3.9E-08 42.9 3.8 42 6-49 84-125 (139)
126 2kn4_A Immunoglobulin G-bindin 96.8 0.0027 9.1E-08 41.9 5.7 84 5-90 12-101 (158)
127 2cjk_A Nuclear polyadenylated 96.8 0.0012 4.2E-08 43.0 3.9 38 6-46 129-166 (167)
128 2kxn_B Transformer-2 protein h 96.8 0.00074 2.5E-08 44.2 2.8 41 4-46 86-126 (129)
129 2jrs_A RNA-binding protein 39; 96.8 0.00067 2.3E-08 43.0 2.5 39 6-46 68-106 (108)
130 2hzc_A Splicing factor U2AF 65 96.8 0.0029 9.8E-08 37.5 5.2 35 4-41 51-85 (87)
131 2dgv_A HnRNP M, heterogeneous 96.8 0.00066 2.3E-08 40.9 2.2 41 5-47 47-87 (92)
132 2dng_A Eukaryotic translation 96.8 0.0019 6.7E-08 39.8 4.5 40 6-48 56-95 (103)
133 2rs2_A Musashi-1, RNA-binding 96.8 0.0026 8.7E-08 40.2 5.1 39 6-47 67-105 (109)
134 2dh8_A DAZ-associated protein 96.8 0.0009 3.1E-08 41.5 2.8 40 6-48 58-97 (105)
135 2kvi_A Nuclear polyadenylated 96.8 0.00089 3E-08 41.1 2.8 41 6-48 45-85 (96)
136 3ucg_A Polyadenylate-binding p 96.8 0.0024 8.3E-08 38.0 4.7 37 6-45 48-84 (89)
137 3p5t_L Cleavage and polyadenyl 96.7 0.00058 2E-08 41.5 1.8 39 6-46 45-83 (90)
138 2cqg_A TDP-43, TAR DNA-binding 96.7 0.0021 7.1E-08 39.6 4.4 38 6-47 57-94 (103)
139 1p1t_A Cleavage stimulation fa 96.7 0.00069 2.3E-08 41.7 2.1 41 6-48 50-90 (104)
140 2jvr_A Nucleolar protein 3; RN 96.7 0.0035 1.2E-07 40.5 5.6 41 4-46 65-105 (111)
141 3ex7_B RNA-binding protein 8A; 96.7 0.0016 5.4E-08 41.6 3.9 40 6-47 64-103 (126)
142 2adc_A Polypyrimidine tract-bi 96.7 0.0016 5.5E-08 45.6 4.1 42 3-46 186-228 (229)
143 1qm9_A Polypyrimidine tract-bi 96.7 0.0012 3.9E-08 44.7 3.1 42 3-46 155-197 (198)
144 2dgp_A Bruno-like 4, RNA bindi 96.6 0.0024 8.1E-08 39.5 4.1 43 5-47 54-97 (106)
145 2kn4_A Immunoglobulin G-bindin 96.6 0.0025 8.4E-08 42.1 4.4 41 5-47 111-151 (158)
146 2cq4_A RNA binding motif prote 96.6 0.0022 7.4E-08 40.3 4.0 40 5-47 66-105 (114)
147 2db1_A Heterogeneous nuclear r 96.6 0.0018 6E-08 41.6 3.6 42 6-50 61-102 (118)
148 2j76_E EIF-4B, EIF4B, eukaryot 96.6 0.0014 4.8E-08 40.6 2.9 39 5-46 60-98 (100)
149 2dnh_A Bruno-like 5, RNA bindi 96.6 0.0019 6.6E-08 39.8 3.5 41 6-48 56-99 (105)
150 1wg5_A Heterogeneous nuclear r 96.6 0.0023 7.9E-08 39.9 3.9 43 5-50 56-98 (104)
151 3lqv_A PRE-mRNA branch site pr 96.6 0.0028 9.4E-08 39.8 4.2 64 5-85 46-109 (115)
152 2qfj_A FBP-interacting repress 96.6 0.0016 5.5E-08 44.1 3.3 41 6-48 167-207 (216)
153 2div_A TRNA selenocysteine ass 96.5 0.0018 6.3E-08 39.5 3.2 39 6-46 52-94 (99)
154 2g4b_A Splicing factor U2AF 65 96.5 0.0025 8.5E-08 41.7 4.0 37 6-44 136-172 (172)
155 1h2v_Z 20 kDa nuclear CAP bind 96.5 0.003 1E-07 41.8 4.4 39 6-46 81-119 (156)
156 2e5g_A U6 snRNA-specific termi 96.5 0.0018 6.2E-08 39.4 3.1 41 8-51 47-87 (94)
157 1iqt_A AUF1, heterogeneous nuc 96.5 0.0018 6.2E-08 37.5 2.9 36 5-43 40-75 (75)
158 2dit_A HIV TAT specific factor 96.5 0.0044 1.5E-07 39.2 4.9 40 5-46 63-102 (112)
159 2nlw_A Eukaryotic translation 96.5 0.0022 7.7E-08 40.0 3.4 39 5-45 60-99 (105)
160 2mss_A Protein (musashi1); RNA 96.5 0.0026 8.7E-08 36.9 3.4 35 6-43 41-75 (75)
161 1uaw_A Mouse-musashi-1; RNP-ty 96.5 0.0019 6.6E-08 37.5 2.7 35 6-43 42-76 (77)
162 3n9u_C Cleavage and polyadenyl 96.5 0.002 6.9E-08 43.6 3.2 43 6-50 99-141 (156)
163 2ki2_A SS-DNA binding protein 96.4 0.0015 5.3E-08 39.2 2.2 40 6-48 43-82 (90)
164 2dhg_A TRNA selenocysteine ass 96.4 0.00091 3.1E-08 41.3 1.2 42 5-48 50-92 (104)
165 3ns6_A Eukaryotic translation 96.4 0.0018 6.1E-08 40.3 2.5 39 5-45 53-92 (100)
166 2i2y_A Fusion protein consists 96.4 0.0032 1.1E-07 41.4 3.9 40 5-46 109-148 (150)
167 2wbr_A GW182, gawky, LD47780P; 96.4 0.0026 9.1E-08 40.5 3.3 41 5-47 42-82 (89)
168 2jwn_A Embryonic polyadenylate 96.4 0.0056 1.9E-07 38.8 4.9 39 5-46 77-115 (124)
169 2lea_A Serine/arginine-rich sp 96.4 0.0023 8E-08 42.0 3.1 41 5-47 88-128 (135)
170 3ue2_A Poly(U)-binding-splicin 96.4 0.004 1.4E-07 40.7 4.2 41 6-48 71-111 (118)
171 2lcw_A RNA-binding protein FUS 95.3 0.00059 2E-08 43.2 0.0 41 6-48 57-97 (116)
172 3d2w_A TAR DNA-binding protein 96.3 0.0061 2.1E-07 37.2 4.6 39 5-47 47-85 (89)
173 1wel_A RNA-binding protein 12; 96.3 0.0013 4.4E-08 42.2 1.4 40 6-48 67-106 (124)
174 2xs2_A Deleted in azoospermia- 96.3 0.0023 7.8E-08 39.4 2.5 38 5-46 49-86 (102)
175 1rk8_A CG8781-PA, CG8781-PA pr 96.3 0.0054 1.8E-07 41.2 4.5 42 6-49 114-155 (165)
176 1x4c_A Splicing factor, argini 96.2 0.013 4.4E-07 36.5 5.9 40 7-48 51-95 (108)
177 3pgw_A U1-A; protein-RNA compl 96.2 0.007 2.4E-07 43.0 4.9 38 5-44 243-281 (282)
178 1wf0_A TDP-43, TAR DNA-binding 96.1 0.0056 1.9E-07 36.7 3.6 40 5-48 41-80 (88)
179 3s7r_A Heterogeneous nuclear r 96.1 0.0085 2.9E-07 35.6 4.4 35 6-43 53-87 (87)
180 4f02_A Polyadenylate-binding p 96.1 0.0058 2E-07 42.3 4.1 39 6-46 143-181 (213)
181 2lmi_A GRSF-1, G-rich sequence 96.1 0.0023 8E-08 40.1 1.9 43 5-50 54-96 (107)
182 2yh0_A Splicing factor U2AF 65 96.1 0.0052 1.8E-07 41.0 3.7 39 6-46 156-194 (198)
183 2d9o_A DNAJ (HSP40) homolog, s 96.0 0.0078 2.7E-07 38.2 4.1 39 4-46 52-90 (100)
184 2hgm_A HNRPF protein, heteroge 96.0 0.002 6.8E-08 42.7 1.3 42 5-49 83-124 (126)
185 2f3j_A RNA and export factor b 96.0 0.0069 2.4E-07 41.7 4.0 42 5-48 128-169 (177)
186 1b7f_A Protein (SXL-lethal pro 96.0 0.0046 1.6E-07 40.1 2.9 38 6-43 131-168 (168)
187 2hgl_A HNRPF protein, heteroge 96.0 0.0045 1.6E-07 41.3 2.9 41 6-49 88-128 (136)
188 2m2b_A RNA-binding protein 10; 96.0 0.0027 9.2E-08 41.1 1.7 42 5-47 66-109 (131)
189 2krb_A Eukaryotic translation 95.9 0.0031 1.1E-07 37.4 1.7 34 5-40 46-80 (81)
190 3dxb_A Thioredoxin N-terminall 95.9 0.0063 2.2E-07 42.3 3.4 44 4-49 173-216 (222)
191 1l3k_A Heterogeneous nuclear r 95.8 0.011 3.9E-07 39.3 4.4 39 6-47 146-184 (196)
192 1s79_A Lupus LA protein; RRM, 95.8 0.007 2.4E-07 38.1 3.1 38 5-45 51-88 (103)
193 2dnn_A RNA-binding protein 12; 95.6 0.019 6.5E-07 36.7 4.7 41 5-48 55-95 (109)
194 1x4e_A RNA binding motif, sing 95.6 0.003 1E-07 37.5 0.8 36 6-43 47-82 (85)
195 1wez_A HnRNP H', FTP-3, hetero 95.3 0.0092 3.1E-07 37.3 2.4 39 6-47 55-93 (102)
196 3q2s_C Cleavage and polyadenyl 95.3 0.0078 2.7E-07 43.0 2.2 43 5-49 111-153 (229)
197 1x5o_A RNA binding motif, sing 95.3 0.016 5.4E-07 36.2 3.4 39 6-44 66-110 (114)
198 1fxl_A Paraneoplastic encephal 95.3 0.012 4.3E-07 37.8 2.9 36 6-43 130-167 (167)
199 3pgw_S U1-70K; protein-RNA com 95.0 0.031 1.1E-06 43.6 5.1 42 5-48 143-184 (437)
200 3u1l_A PRE-mRNA-splicing facto 95.0 0.023 7.9E-07 41.6 4.0 43 4-46 177-229 (240)
201 3nmr_A Cugbp ELAV-like family 94.9 0.019 6.4E-07 37.3 3.1 39 6-44 136-175 (175)
202 2dnl_A Cytoplasmic polyadenyla 94.8 0.036 1.2E-06 34.8 4.2 37 4-44 50-86 (114)
203 3tht_A Alkylated DNA repair pr 94.8 0.055 1.9E-06 41.5 5.8 47 3-49 53-102 (345)
204 2voo_A Lupus LA protein; RNA-b 94.6 0.041 1.4E-06 38.2 4.3 37 5-44 149-185 (193)
205 2dha_A FLJ20171 protein; RRM d 94.1 0.017 5.8E-07 37.8 1.4 42 6-50 68-109 (123)
206 2dnr_A Synaptojanin-1; RRM dom 94.1 0.092 3.2E-06 33.5 4.8 36 7-45 50-85 (91)
207 3beg_B Splicing factor, argini 93.6 0.061 2.1E-06 33.9 3.3 37 7-45 52-93 (115)
208 2hgn_A Heterogeneous nuclear r 93.6 0.021 7.2E-07 38.2 1.1 41 6-49 86-126 (139)
209 3r27_A HnRNP L, heterogeneous 93.2 0.17 5.8E-06 32.2 5.0 37 53-91 17-53 (100)
210 3sde_A Paraspeckle component 1 92.4 0.14 4.8E-06 36.3 4.0 42 6-47 137-180 (261)
211 1ufw_A Synaptojanin 2; RNP dom 92.3 0.24 8.1E-06 31.8 4.7 33 7-42 59-91 (95)
212 1rk8_A CG8781-PA, CG8781-PA pr 92.2 0.3 1E-05 32.4 5.3 80 11-92 11-105 (165)
213 1wex_A Hypothetical protein (r 91.2 0.58 2E-05 29.3 5.6 36 54-91 12-47 (104)
214 1owx_A Lupus LA protein, SS-B, 90.3 0.3 1E-05 32.3 3.7 43 3-45 52-95 (121)
215 2cq2_A Hypothetical protein LO 89.8 0.23 8E-06 32.2 2.8 36 54-89 22-57 (114)
216 3tyt_A Heterogeneous nuclear r 89.5 0.42 1.4E-05 33.1 4.2 24 6-29 165-188 (205)
217 2cq1_A PTB-like protein L; RRM 89.1 0.9 3.1E-05 28.3 5.2 36 54-91 12-47 (101)
218 2ad9_A Polypyrimidine tract-bi 87.5 0.93 3.2E-05 29.4 4.6 36 54-91 28-63 (119)
219 1sjq_A Polypyrimidine tract-bi 87.1 0.85 2.9E-05 29.1 4.1 36 54-91 13-48 (105)
220 4fxv_A ELAV-like protein 1; RN 85.4 0.9 3.1E-05 27.8 3.5 29 63-91 23-51 (99)
221 3s7r_A Heterogeneous nuclear r 85.3 1.4 4.6E-05 25.6 4.1 29 63-91 15-43 (87)
222 2dnh_A Bruno-like 5, RNA bindi 85.0 1.4 4.6E-05 26.5 4.2 34 56-91 14-47 (105)
223 2ywk_A Putative RNA-binding pr 84.6 1.5 5E-05 25.8 4.1 35 55-91 14-48 (95)
224 2diu_A KIAA0430 protein; struc 84.1 0.79 2.7E-05 29.3 2.8 34 55-89 6-44 (96)
225 1x4e_A RNA binding motif, sing 83.9 1.5 5E-05 25.3 3.8 28 64-91 10-37 (85)
226 1why_A Hypothetical protein ri 83.8 1.4 4.7E-05 26.3 3.8 27 64-90 22-48 (97)
227 3s8s_A Histone-lysine N-methyl 83.8 1.6 5.3E-05 27.3 4.2 29 63-91 10-38 (110)
228 1x4d_A Matrin 3; structural ge 83.7 0.76 2.6E-05 28.9 2.6 35 55-91 13-48 (102)
229 2ytc_A PRE-mRNA-splicing facto 83.5 1.6 5.4E-05 25.1 3.9 28 64-91 17-44 (85)
230 2d9p_A Polyadenylate-binding p 83.4 1.7 5.7E-05 26.1 4.1 30 63-92 19-48 (103)
231 2cqc_A Arginine/serine-rich sp 83.1 1.7 6E-05 25.4 4.0 36 54-91 12-47 (95)
232 2dgv_A HnRNP M, heterogeneous 83.0 1.8 6.1E-05 25.2 4.0 29 63-91 12-40 (92)
233 4f25_A Polyadenylate-binding p 83.0 1.4 4.7E-05 27.4 3.6 29 63-91 9-37 (115)
234 2do4_A Squamous cell carcinoma 82.8 1.9 6.6E-05 25.6 4.2 28 64-91 22-49 (100)
235 2cqg_A TDP-43, TAR DNA-binding 82.6 2 6.7E-05 25.7 4.2 29 63-91 19-47 (103)
236 2cpf_A RNA binding motif prote 82.4 1.9 6.3E-05 25.5 4.0 29 63-91 9-37 (98)
237 1p27_B RNA-binding protein 8A; 82.3 2 6.8E-05 25.8 4.1 34 56-91 22-55 (106)
238 2j8a_A Histone-lysine N-methyl 82.2 1.5 5.1E-05 29.8 3.8 43 6-48 48-98 (136)
239 2dnq_A RNA-binding protein 4B; 82.1 2.1 7E-05 25.1 4.0 28 64-91 13-40 (90)
240 2pe8_A Splicing factor 45; RRM 81.8 3 0.0001 25.9 4.9 37 54-92 5-46 (105)
241 2cq0_A Eukaryotic translation 81.7 1.9 6.4E-05 25.8 3.8 35 55-91 13-47 (103)
242 2dnz_A Probable RNA-binding pr 81.7 2.3 7.9E-05 24.9 4.2 28 64-91 10-37 (95)
243 2dgt_A RNA-binding protein 30; 81.6 1.2 4.2E-05 26.2 2.9 29 63-91 14-42 (92)
244 3bs9_A Nucleolysin TIA-1 isofo 81.4 2.4 8.2E-05 24.3 4.1 29 63-91 10-38 (87)
245 1x4a_A Splicing factor, argini 81.4 2 6.8E-05 26.1 3.9 35 55-91 20-54 (109)
246 2cq3_A RNA-binding protein 9; 81.1 2.5 8.6E-05 25.2 4.3 34 56-91 14-47 (103)
247 1whx_A Hypothetical protein ri 80.9 1.4 4.9E-05 27.3 3.2 28 63-90 14-41 (111)
248 3lqv_A PRE-mRNA branch site pr 80.8 2.2 7.4E-05 26.1 4.0 35 55-91 6-40 (115)
249 2khc_A Testis-specific RNP-typ 80.8 2.1 7.2E-05 26.3 3.9 29 63-91 44-72 (118)
250 2cqi_A Nucleolysin TIAR; RNA r 80.5 1.7 5.7E-05 26.1 3.3 34 56-91 14-47 (103)
251 1x4c_A Splicing factor, argini 80.4 2.5 8.7E-05 25.7 4.2 29 63-91 19-47 (108)
252 2e5h_A Zinc finger CCHC-type a 80.3 2.3 8E-05 24.8 3.8 34 56-91 15-48 (94)
253 2xs2_A Deleted in azoospermia- 79.8 2.7 9.4E-05 25.0 4.1 29 63-91 13-41 (102)
254 3mdf_A Peptidyl-prolyl CIS-tra 79.7 2.1 7E-05 24.5 3.4 32 56-89 6-37 (85)
255 3d2w_A TAR DNA-binding protein 79.5 1.8 6.1E-05 25.8 3.1 28 63-90 15-42 (89)
256 2cpz_A CUG triplet repeat RNA- 79.2 1.9 6.6E-05 26.4 3.3 29 63-91 29-57 (115)
257 2do0_A HnRNP M, heterogeneous 79.1 3 0.0001 25.3 4.2 28 64-91 20-47 (114)
258 2rs2_A Musashi-1, RNA-binding 78.9 2.4 8.3E-05 26.0 3.7 29 63-91 29-57 (109)
259 3ulh_A THO complex subunit 4; 78.9 2.8 9.6E-05 25.1 4.0 36 54-91 26-61 (107)
260 2e44_A Insulin-like growth fac 78.9 1.8 6.1E-05 25.5 3.0 27 63-89 19-45 (96)
261 2dh8_A DAZ-associated protein 78.9 1.9 6.5E-05 25.9 3.2 29 63-91 20-48 (105)
262 2dgs_A DAZ-associated protein 78.8 2.7 9.1E-05 24.9 3.8 34 56-91 9-42 (99)
263 2cph_A RNA binding motif prote 78.5 1.8 6.2E-05 26.0 3.0 28 64-91 20-47 (107)
264 2dgu_A Heterogeneous nuclear r 78.4 1.7 5.9E-05 26.1 2.8 28 64-91 16-43 (103)
265 2dnp_A RNA-binding protein 14; 78.3 2 6.8E-05 25.1 3.0 28 63-90 13-40 (90)
266 2dnl_A Cytoplasmic polyadenyla 78.2 1.2 4E-05 27.6 2.0 24 64-87 13-36 (114)
267 2jvo_A Nucleolar protein 3; nu 78.2 2.4 8.2E-05 26.1 3.5 34 56-91 30-63 (108)
268 1x5u_A Splicing factor 3B subu 78.1 1.9 6.4E-05 25.9 2.9 35 55-91 13-47 (105)
269 2jrs_A RNA-binding protein 39; 78.0 3.4 0.00011 25.4 4.2 29 63-91 30-58 (108)
270 1x5o_A RNA binding motif, sing 78.0 3.2 0.00011 25.2 4.1 29 63-91 29-57 (114)
271 2cpj_A Non-POU domain-containi 77.8 2.3 8E-05 25.3 3.3 33 56-90 14-46 (99)
272 3md1_A Nuclear and cytoplasmic 77.8 3.8 0.00013 23.2 4.1 29 63-91 5-33 (83)
273 2cq4_A RNA binding motif prote 77.7 2.8 9.5E-05 25.6 3.7 29 63-91 29-57 (114)
274 1x5p_A Negative elongation fac 77.7 2.9 0.0001 24.8 3.8 32 56-91 14-45 (97)
275 1oo0_B CG8781-PA, drosophila Y 77.7 2.3 7.9E-05 25.7 3.3 34 56-91 25-58 (110)
276 3beg_B Splicing factor, argini 77.6 2.1 7E-05 26.6 3.1 29 63-91 20-48 (115)
277 1h2v_Z 20 kDa nuclear CAP bind 77.5 3.1 0.00011 26.8 4.1 35 55-91 37-71 (156)
278 2jwn_A Embryonic polyadenylate 77.4 2.6 8.8E-05 26.1 3.5 29 63-91 40-68 (124)
279 4a8x_A RNA-binding protein wit 77.3 2.5 8.5E-05 24.3 3.2 28 63-90 8-35 (88)
280 1wf0_A TDP-43, TAR DNA-binding 77.0 1.6 5.4E-05 25.5 2.3 27 64-90 10-36 (88)
281 1whw_A Hypothetical protein ri 76.9 2.4 8.1E-05 25.1 3.1 28 63-90 12-39 (99)
282 2kvi_A Nuclear polyadenylated 76.7 2.5 8.6E-05 25.1 3.2 33 56-90 9-42 (96)
283 1uaw_A Mouse-musashi-1; RNP-ty 76.5 1.9 6.6E-05 24.2 2.6 28 63-90 4-31 (77)
284 2dgo_A Cytotoxic granule-assoc 76.5 3.8 0.00013 24.9 4.1 29 63-91 19-47 (115)
285 2la4_A Nuclear and cytoplasmic 76.4 2.5 8.4E-05 25.2 3.1 28 63-90 31-58 (101)
286 2e5g_A U6 snRNA-specific termi 76.2 3.1 0.00011 24.5 3.5 27 63-89 12-38 (94)
287 1x4g_A Nucleolysin TIAR; struc 76.0 2.8 9.4E-05 25.4 3.3 29 63-91 29-57 (109)
288 1s79_A Lupus LA protein; RRM, 75.9 3.8 0.00013 25.2 4.0 28 64-91 16-43 (103)
289 1u6f_A Tcubp1, RNA-binding pro 75.8 2.6 9E-05 26.5 3.3 29 63-91 46-74 (139)
290 2xnq_A Nuclear polyadenylated 75.6 3.9 0.00013 24.5 3.9 33 55-89 20-53 (97)
291 3ucg_A Polyadenylate-binding p 75.5 4.6 0.00016 23.2 4.1 29 63-91 10-38 (89)
292 2dnm_A SRP46 splicing factor; 75.4 3 0.0001 24.9 3.3 33 56-90 12-44 (103)
293 1p1t_A Cleavage stimulation fa 75.3 2.6 9E-05 25.1 3.1 29 63-91 12-40 (104)
294 2wbr_A GW182, gawky, LD47780P; 75.2 1.3 4.5E-05 27.8 1.7 27 64-90 12-38 (89)
295 1x4h_A RNA-binding protein 28; 75.2 2.5 8.5E-05 25.5 3.0 34 55-90 13-46 (111)
296 1x4b_A Heterogeneous nuclear r 75.1 3 0.0001 25.5 3.3 29 63-91 31-59 (116)
297 2nlw_A Eukaryotic translation 75.1 2.6 9E-05 25.6 3.1 28 63-90 19-52 (105)
298 2mss_A Protein (musashi1); RNA 75.0 2.1 7.3E-05 24.0 2.5 27 63-89 3-29 (75)
299 2la6_A RNA-binding protein FUS 74.9 3.6 0.00012 24.4 3.6 32 55-88 11-42 (99)
300 1x4f_A Matrin 3; structural ge 74.6 1.8 6.2E-05 27.7 2.3 36 54-91 22-58 (112)
301 2x1f_A MRNA 3'-END-processing 74.3 3.1 0.0001 24.6 3.2 27 64-90 7-33 (96)
302 2cqb_A Peptidyl-prolyl CIS-tra 74.1 1.9 6.4E-05 25.7 2.1 27 64-90 17-43 (102)
303 2fy1_A RNA-binding motif prote 73.9 3 0.0001 26.0 3.1 29 63-91 11-39 (116)
304 2div_A TRNA selenocysteine ass 73.9 2.9 0.0001 24.7 3.0 25 63-87 13-37 (99)
305 2cqd_A RNA-binding region cont 73.7 3.5 0.00012 25.2 3.4 34 56-91 16-49 (116)
306 2kxn_B Transformer-2 protein h 73.7 3.8 0.00013 26.1 3.7 36 54-91 43-78 (129)
307 2fc9_A NCL protein; structure 73.6 2 6.7E-05 25.6 2.1 31 56-88 14-44 (101)
308 2krb_A Eukaryotic translation 73.4 3 0.0001 23.9 2.9 28 63-90 5-38 (81)
309 1owx_A Lupus LA protein, SS-B, 73.1 3 0.0001 27.3 3.1 35 55-91 16-51 (121)
310 2hvz_A Splicing factor, argini 73.1 2.4 8.1E-05 25.3 2.4 29 63-91 4-32 (101)
311 1fjc_A Nucleolin RBD2, protein 72.9 2 6.7E-05 25.3 2.0 32 56-89 15-46 (96)
312 1wf1_A RNA-binding protein RAL 72.8 3.3 0.00011 25.1 3.1 26 64-89 32-58 (110)
313 3ex7_B RNA-binding protein 8A; 72.8 3.3 0.00011 25.6 3.2 34 55-90 20-53 (126)
314 2dgp_A Bruno-like 4, RNA bindi 72.2 1.7 5.7E-05 26.1 1.6 28 63-90 17-44 (106)
315 3ns6_A Eukaryotic translation 72.0 2.3 7.8E-05 25.7 2.2 28 63-90 10-43 (100)
316 1nu4_A U1A RNA binding domain; 70.8 4.3 0.00015 23.7 3.2 34 55-90 6-43 (97)
317 2kt5_A RNA and export factor-b 70.6 4 0.00014 25.3 3.2 34 56-91 34-67 (124)
318 1x5s_A Cold-inducible RNA-bind 70.5 2.6 8.8E-05 25.1 2.2 34 56-91 11-44 (102)
319 1iqt_A AUF1, heterogeneous nuc 70.1 2.3 8E-05 23.7 1.8 27 63-89 3-29 (75)
320 2dhg_A TRNA selenocysteine ass 69.7 5.6 0.00019 23.6 3.6 28 64-91 14-42 (104)
321 1wg5_A Heterogeneous nuclear r 69.5 5.5 0.00019 24.0 3.6 26 63-88 19-44 (104)
322 2err_A Ataxin-2-binding protei 69.4 3.4 0.00012 25.2 2.6 28 63-90 33-60 (109)
323 2e5j_A Methenyltetrahydrofolat 68.9 2.5 8.7E-05 25.1 1.9 25 63-87 23-47 (97)
324 1wez_A HnRNP H', FTP-3, hetero 68.9 5.7 0.0002 24.1 3.6 23 64-86 20-42 (102)
325 2ku7_A MLL1 PHD3-CYP33 RRM chi 68.8 4.8 0.00016 25.0 3.3 34 56-91 62-95 (140)
326 2bz2_A Negative elongation fac 68.8 3.1 0.00011 26.3 2.3 30 56-89 38-67 (121)
327 2lkz_A RNA-binding protein 5; 68.5 2.6 8.9E-05 25.7 1.9 23 63-85 13-35 (95)
328 2cpi_A CCR4-NOT transcription 67.5 4.5 0.00015 24.7 2.9 29 63-91 19-50 (111)
329 2dgx_A KIAA0430 protein; RRM d 67.5 4.4 0.00015 24.0 2.8 29 63-91 13-45 (96)
330 1x5t_A Splicing factor 3B subu 67.2 3.8 0.00013 24.0 2.4 25 64-88 10-34 (96)
331 2cpe_A RNA-binding protein EWS 67.0 3.7 0.00013 24.9 2.4 25 63-87 19-43 (113)
332 3p5t_L Cleavage and polyadenyl 66.7 3.6 0.00012 24.1 2.2 22 63-84 5-26 (90)
333 3n9u_C Cleavage and polyadenyl 65.6 4.2 0.00014 26.9 2.6 24 62-85 58-81 (156)
334 2cqh_A IGF-II mRNA-binding pro 65.5 2.3 7.9E-05 24.9 1.2 22 64-85 13-34 (93)
335 2cpd_A Apobec-1 stimulating pr 64.9 8.5 0.00029 22.7 3.7 33 55-89 13-47 (99)
336 1wi8_A EIF-4B, eukaryotic tran 64.6 6.4 0.00022 23.4 3.1 22 63-84 19-40 (104)
337 2l9w_A U4/U6 snRNA-associated- 64.3 9.8 0.00034 25.2 4.1 34 6-41 62-95 (117)
338 2dng_A Eukaryotic translation 64.1 9.6 0.00033 22.6 3.9 31 55-87 13-43 (103)
339 2voo_A Lupus LA protein; RNA-b 63.7 9.3 0.00032 26.0 4.2 28 64-91 114-141 (193)
340 3tht_A Alkylated DNA repair pr 63.1 6.8 0.00023 29.8 3.6 37 53-89 14-50 (345)
341 2d9o_A DNAJ (HSP40) homolog, s 62.9 5.9 0.0002 24.5 2.8 22 70-91 28-49 (100)
342 2ki2_A SS-DNA binding protein 62.8 2.7 9.2E-05 24.4 1.1 28 63-90 5-32 (90)
343 2a3j_A U1 small nuclear ribonu 62.1 5.2 0.00018 25.7 2.5 34 54-89 26-63 (127)
344 2lea_A Serine/arginine-rich sp 61.4 5.1 0.00017 25.6 2.3 73 8-90 6-78 (135)
345 3pgw_S U1-70K; protein-RNA com 61.2 6.5 0.00022 30.4 3.3 29 63-91 106-134 (437)
346 2ek1_A RNA-binding protein 12; 60.7 3.1 0.00011 24.3 1.1 25 63-87 19-43 (95)
347 2cpy_A RNA-binding protein 12; 59.2 4.5 0.00015 24.9 1.7 24 63-86 19-42 (114)
348 2cqp_A RNA-binding protein 12; 58.7 6.9 0.00024 22.9 2.5 25 63-87 19-43 (98)
349 1wel_A RNA-binding protein 12; 57.9 6.9 0.00024 24.3 2.5 24 63-86 29-52 (124)
350 2j76_E EIF-4B, EIF4B, eukaryot 56.8 8.3 0.00028 22.9 2.6 25 64-89 24-48 (100)
351 2dis_A Unnamed protein product 55.8 7 0.00024 23.4 2.2 27 64-90 13-40 (109)
352 3egn_A RNA-binding protein 40; 55.2 5.8 0.0002 25.1 1.8 30 55-86 43-72 (143)
353 3q2s_C Cleavage and polyadenyl 53.6 15 0.00052 25.6 3.9 29 62-90 71-101 (229)
354 2f3j_A RNA and export factor b 53.2 9.1 0.00031 25.7 2.6 34 56-91 87-120 (177)
355 2fc8_A NCL protein; structure 53.2 16 0.00054 21.4 3.5 26 64-89 20-45 (102)
356 2hgn_A Heterogeneous nuclear r 53.1 9.1 0.00031 25.0 2.5 24 63-86 50-73 (139)
357 2db1_A Heterogeneous nuclear r 51.6 9 0.00031 23.7 2.2 23 63-85 21-43 (118)
358 2jvr_A Nucleolar protein 3; RN 51.1 8.5 0.00029 24.1 2.1 29 61-89 30-59 (111)
359 2m2b_A RNA-binding protein 10; 50.3 9.1 0.00031 24.0 2.1 26 63-88 27-52 (131)
360 2lmi_A GRSF-1, G-rich sequence 49.2 11 0.00037 22.8 2.3 23 63-85 15-37 (107)
361 3pq1_A Poly(A) RNA polymerase; 47.4 5.2 0.00018 31.8 0.7 26 1-26 84-109 (464)
362 2hgl_A HNRPF protein, heteroge 44.9 12 0.00042 24.2 2.1 23 63-85 48-70 (136)
363 3u1l_A PRE-mRNA-splicing facto 42.9 18 0.00063 26.0 3.0 36 55-92 132-176 (240)
364 2dha_A FLJ20171 protein; RRM d 41.9 16 0.00055 23.2 2.3 24 63-86 27-50 (123)
365 2j8a_A Histone-lysine N-methyl 35.8 30 0.001 23.3 2.9 27 64-90 7-37 (136)
366 2hgm_A HNRPF protein, heteroge 35.3 39 0.0013 21.6 3.4 25 62-86 45-69 (126)
367 2dhx_A Poly (ADP-ribose) polym 33.0 36 0.0012 21.9 2.9 19 7-25 48-66 (104)
368 3lo3_A Uncharacterized conserv 27.5 48 0.0017 20.1 2.7 19 7-25 54-72 (94)
369 1wey_A Calcipressin 1; structu 24.4 1.3E+02 0.0045 19.1 4.4 40 7-48 47-86 (104)
370 2fiu_A Conserved hypothetical 23.4 63 0.0022 19.7 2.7 19 7-25 55-73 (99)
371 1whv_A Poly(A)-specific ribonu 23.3 59 0.002 20.8 2.5 29 53-86 12-42 (100)
No 1
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=84.51 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=44.2
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
.+.|++|||||+|.++|.++++++...++.++|++++++||+++||+
T Consensus 54 ~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~l~ 100 (100)
T 3r27_A 54 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS 100 (100)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSCCC
T ss_pred EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccccC
Confidence 35789999999999999999999999999999999999999999985
No 2
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.9e-09 Score=69.56 Aligned_cols=49 Identities=51% Similarity=0.767 Sum_probs=45.4
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ 52 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~ 52 (94)
++|++|||||++.++|..+++++..++..+.|++++++|++++++++++
T Consensus 49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~~~ 97 (101)
T 2cq1_A 49 KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTSG 97 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcCCC
Confidence 5689999999999999999999988888999999999999999998864
No 3
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=1.7e-09 Score=70.21 Aligned_cols=50 Identities=34% Similarity=0.406 Sum_probs=44.8
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc-ceeeeccC
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELKTDQ 52 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~-~~eL~~~~ 52 (94)
.+.|++|||||++.++|..+++++...+..+.|++++|+||+ +++|+.+.
T Consensus 49 ~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~~~~ 99 (102)
T 1x4d_A 49 LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKSGP 99 (102)
T ss_dssp CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTSSCCS
T ss_pred EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCCCCCC
Confidence 356789999999999999999999988889999999999999 67887754
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.87 E-value=2.2e-09 Score=69.48 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=45.2
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ 52 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~ 52 (94)
++|++|||||++.++|..++.++...+..+.|++++++||++++++++.
T Consensus 49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~~~ 97 (104)
T 1wex_A 49 PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPG 97 (104)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCCSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccCCC
Confidence 5689999999999999999999988888899999999999999998864
No 5
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.86 E-value=4.4e-09 Score=70.60 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred ccceeeecc----CCCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 43 SNHKELKTD----QTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 43 S~~~eL~~~----~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|++|+|+++ .+..|++||++.|.|..|++|.|.||++|++||.++-|-+
T Consensus 5 s~~q~i~~~~~~~~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i 57 (124)
T 2e5i_A 5 SSGKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI 57 (124)
T ss_dssp CCCCCCCCSCCCCCCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCceeeeCCCCCCCCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 899999985 2346899999999999999999999999999997765543
No 6
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=2.5e-09 Score=71.46 Aligned_cols=52 Identities=54% Similarity=0.814 Sum_probs=46.7
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCC
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHS 55 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~ 55 (94)
++|++|||||++.++|..+++.+...+..+.|++++++||++++++++++++
T Consensus 65 ~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~~~~~ 116 (119)
T 2ad9_A 65 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 116 (119)
T ss_dssp GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCCCCTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCcccccc
Confidence 4589999999999999999999887778899999999999999999876543
No 7
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=3e-09 Score=69.80 Aligned_cols=51 Identities=55% Similarity=0.825 Sum_probs=45.9
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCC
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTH 54 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~ 54 (94)
++|++|||||++.++|..++..+..++..+.|++++++||+.+++++.+++
T Consensus 50 ~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~~~~ 100 (105)
T 1sjq_A 50 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 100 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCTTC-
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCccccc
Confidence 468999999999999999999988778899999999999999999887544
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.63 E-value=1.3e-07 Score=67.00 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC--------------------------------
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ-------------------------------- 52 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~-------------------------------- 52 (94)
+|..|||||+|.++|..++...... .+.|+++.+.+|+++.+...+
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 118 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNN--FMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNR 118 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC--EECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccc
Confidence 4789999999999999999988765 789999999999876542100
Q ss_pred CCCCCcEEEEEEcccCCceeHhHHHhhhccccce
Q psy9170 53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
...|++.|. |.|.-+.+|-|-|..+|++||.+
T Consensus 119 ~~~p~~~l~--v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 119 IQHPSNVLH--FFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp CCCCCSEEE--EEEECTTCCHHHHHHHHHHHTCC
T ss_pred cCCCcceEE--EeCCCCCCCHHHHHHHHHhcCCc
Confidence 012455655 46988999999999999999975
No 9
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=6e-08 Score=64.04 Aligned_cols=43 Identities=30% Similarity=0.292 Sum_probs=39.7
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|++|||||+|.++|..+++++...+..+.|++++++||+.+
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 5689999999999999999999988888899999999999864
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.52 E-value=5.7e-07 Score=58.94 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=60.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
|..|||||++.++|..++..+.. ..+.|+++.+.++..+.-. .+++- +-|.|.-+.+|-|-|..+|++||.
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~~~~~~-----~~~~~--l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNG--LRLQTKTIKVSYARPSSAS-----IRDAN--LYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTT--CEETTEECEEEECCCCCGG-----GTTCE--EEEESCCTTCCHHHHHHHHGGGSC
T ss_pred eeEEEEEECCHHHHHHHHHHcCC--CccCCceEEEEecCCCccc-----CCCCc--EEECCCCCcCCHHHHHHHHHhcCC
Confidence 47899999999999999997765 4789999999999854321 12222 357899999999999999999997
Q ss_pred eEEEEE
Q psy9170 86 YLIVCV 91 (94)
Q Consensus 86 ~~~v~~ 91 (94)
+.-+-+
T Consensus 115 i~~~~i 120 (167)
T 1fxl_A 115 IITSRI 120 (167)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 765543
No 11
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.1e-06 Score=57.58 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
.+..|||||++.++|..++...... .+.|+++.+.++..+.-.. ..++.-| -|.|.-+.+|-|-|..+|++||
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~~~~~~~~~---~~~~~~l--~v~nl~~~~t~~~l~~~f~~~G 112 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGK--QIENNIVKINWAFQSQQSS---SDDTFNL--FVGDLNVNVDDETLRNAFKDFP 112 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCCCCC---CTTCEEE--EEESCCTTCCHHHHHHHHTTST
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCC--ccCCCeeEEEEcCCCCCCC---CCCCceE--EECCCCCCCCHHHHHHHHhccC
Confidence 3568999999999999999876655 7899999999997654322 2334443 4679889999999999999999
Q ss_pred ceEEEEEE
Q psy9170 85 VYLIVCVL 92 (94)
Q Consensus 85 ~~~~v~~~ 92 (94)
.+.-+-+.
T Consensus 113 ~i~~~~i~ 120 (166)
T 3md3_A 113 SYLSGHVM 120 (166)
T ss_dssp TEEEEEEE
T ss_pred CeeEEEEE
Confidence 87766543
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.48 E-value=8.3e-07 Score=58.46 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
|..|||||++.++|..++...... .+.|+++.+.++..+.- ..+++.| -|.|.-+.+|-|-|..+|++||.
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~~~~~-----~~~~~~l--~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGI--TVRNKRLKVSYARPGGE-----SIKDTNL--YVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCSS-----TTTTCEE--EEESCCTTCCHHHHHHHHTSSSC
T ss_pred ceEEEEEECCHHHHHHHHHhcCCC--EeCCcEEEEEecCCCcc-----cCCCCCE--EEeCCCCCCCHHHHHHhhhcCCc
Confidence 468999999999999999877654 78999999999875432 2233443 46798899999999999999997
Q ss_pred eEEEEE
Q psy9170 86 YLIVCV 91 (94)
Q Consensus 86 ~~~v~~ 91 (94)
+.-+-+
T Consensus 116 i~~~~i 121 (168)
T 1b7f_A 116 IVQKNI 121 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 765544
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.47 E-value=1.3e-06 Score=59.13 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC---------------CCCCCcEEEEEEcccC
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ---------------THSNALLLHLTIGIIL 68 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~---------------s~~~n~ILL~TI~n~~ 68 (94)
+.|..|||||++.++|..++ .. +...+.|+++.++++....-.... ...+.+-| -|.|.-
T Consensus 49 ~~~g~afV~F~~~~~A~~Al-~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~ 123 (198)
T 2yh0_A 49 QDKNFAFLEFRSVDETTQAM-AF--DGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL--FIGGLP 123 (198)
T ss_dssp TTTTEEEEEESCSHHHHHHG-GG--TTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEE--EEECCC
T ss_pred CCCCEEEEEeCCHHHHHHHH-Hh--cCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEE--EEeCCC
Confidence 45889999999999999999 33 445799999999998865322110 01233443 467999
Q ss_pred CceeHhHHHhhhccccceEEEEE
Q psy9170 69 RPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 69 ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.+|-+-|..+|++||.+.-|-+
T Consensus 124 ~~~~~~~l~~~f~~~G~v~~~~~ 146 (198)
T 2yh0_A 124 NYLNDDQVKELLTSFGPLKAFNL 146 (198)
T ss_dssp TTCCHHHHHHHHHTBSCEEEEEE
T ss_pred CCCCHHHHHHHHHHcCCccEEEE
Confidence 99999999999999998765544
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.46 E-value=1.8e-06 Score=57.64 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=62.0
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC 83 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~ 83 (94)
+.|..|||||++.++|..+++ . +...+.|+++.+.++..++-.. ..+++.| -|.|.-+.+|-+-|..+|++|
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l--~g~~~~g~~l~v~~~~~~~~~~---~~~~~~l--~v~nlp~~~t~~~l~~~F~~~ 123 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-L--TGLKVFGNEIKLEKPKGRDSKK---VRAARTL--LAKNLSFNITEDELKEVFEDA 123 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-G--GGEEETTEEEEEECCCCSSCST---TGGGGEE--EEESCCSSCCHHHHHHHCTTC
T ss_pred ccccEEEEEECCHHHHHHHHh-c--CCCEeCCeEEEEecCCCccccc---cccCCEE--EEeCCCCCCCHHHHHHHHHhc
Confidence 457899999999999999995 3 3457889999999998754322 2334444 467998999999999999999
Q ss_pred cceEEE
Q psy9170 84 QVYLIV 89 (94)
Q Consensus 84 g~~~~v 89 (94)
|.+.++
T Consensus 124 g~v~~~ 129 (175)
T 1fje_B 124 LEIRLV 129 (175)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 988776
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.45 E-value=1.7e-06 Score=57.33 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=60.5
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC 83 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~ 83 (94)
+.|..|||||++.++|..++ . -+...+.|+++.++++...+- ..+.+-| -|.|.-+.+|-|-|..+|++|
T Consensus 49 ~~~g~afV~f~~~~~A~~A~-~--~~~~~~~g~~i~v~~~~~~~~-----~~~~~~l--~v~nlp~~~t~~~l~~~f~~~ 118 (172)
T 2g4b_A 49 QDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQSLKIRRPHDYQP-----LPGAHKL--FIGGLPNYLNDDQVKELLTSF 118 (172)
T ss_dssp TTTTEEEEEESSHHHHHHHG-G--GTTCEETTEECEEECCSSCCC-----CTTTTCE--EEECCCTTCCHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCHHHHHHHH-H--hCCcEecCceeeecCCcccCC-----CCCCCEE--EEEcCCCcCCHHHHHHHHHhc
Confidence 45889999999999999999 3 344578999999998765432 1222333 367999999999999999999
Q ss_pred cceEEEEE
Q psy9170 84 QVYLIVCV 91 (94)
Q Consensus 84 g~~~~v~~ 91 (94)
|.+.-|-+
T Consensus 119 G~v~~v~i 126 (172)
T 2g4b_A 119 GPLKAFNL 126 (172)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 98766544
No 16
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.44 E-value=1.3e-06 Score=59.06 Aligned_cols=81 Identities=11% Similarity=0.040 Sum_probs=59.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc-CCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD-QTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~-~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
|..|||||++.++|..+++. ....+.|+++.+.++..++-... ....+.+.| -|.|.-+.+|-|-|..+|++||
T Consensus 55 ~g~afV~f~~~~~A~~A~~~---~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l--~V~nLp~~~t~~~l~~~F~~~G 129 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNA---RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI--FVGGIKEDTEEHHLRDYFEQYG 129 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHT---CSCEETTEECEEEECCC-----------CCSEE--EEECCTTTCCHHHHHHHHTTTS
T ss_pred cceEEEEeCCHHHHHHHHhc---CCCEECCEEeeeecccCcccccccccCCCcceE--EEeCCCCCCCHHHHHHHHhcCC
Confidence 56899999999999999976 45689999999999987654332 222233443 3689889999999999999999
Q ss_pred ceEEEEE
Q psy9170 85 VYLIVCV 91 (94)
Q Consensus 85 ~~~~v~~ 91 (94)
.+.-|-+
T Consensus 130 ~i~~v~i 136 (196)
T 1l3k_A 130 KIEVIEI 136 (196)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 7765544
No 17
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.37 E-value=4.8e-07 Score=61.28 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
...||+||++.|.|..|++|.|.||++|++||.++-|-
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~ 59 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 59 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEE
Confidence 35689999999999999999999999999999776653
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.29 E-value=4.9e-06 Score=58.74 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=62.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC------------------------------CCC
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ------------------------------THS 55 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~------------------------------s~~ 55 (94)
|..|||||++.++|..+++..... .+.|+++.++++..+....+. ...
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 149 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTC--BCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCC
Confidence 678999999999999999977654 679999999999865322110 012
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhcccc-ceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQ-VYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g-~~~~v~~ 91 (94)
|++.|. |.|.-+.+|-+-|..+|++|| .+.-|-+
T Consensus 150 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 150 PSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp SCSEEE--EECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred CCCEEE--EeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 345554 569888999999999999999 6655443
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.29 E-value=2.4e-06 Score=58.25 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=62.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccC------------------------------CCC
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ------------------------------THS 55 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~------------------------------s~~ 55 (94)
|..|||||++.++|..++...... .+.|+++.+.++..+....+. ...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 118 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGH--KLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 118 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTC--CCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC--eecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCC
Confidence 678999999999999999977654 579999999999865322110 012
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhcccc-ceEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQ-VYLIVC 90 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g-~~~~v~ 90 (94)
|++.|. |.|.-+.+|-+-|..+|++|| .+.-|-
T Consensus 119 ~~~~l~--v~nl~~~~~~~~l~~~f~~~G~~v~~v~ 152 (198)
T 1qm9_A 119 PSATLH--LSNIPPSVSEEDLKVLFSSNGGVVKGFK 152 (198)
T ss_dssp CCCEEE--ECCCCTTCCHHHHHHHHHHTTSCCCEEE
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHHcCCCceEEE
Confidence 355554 679999999999999999999 655443
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.28 E-value=6.2e-06 Score=59.18 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=36.1
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+.|..|||||++.++|..++..... ..+.|+++.++|++.+.
T Consensus 50 ~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 50 KMRGQAFVIFKEVSSATNALRSMQG--FPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CcceEEEEEECCHHHHHHHHHHhcC--CeeCCcEEEEEEeccCc
Confidence 3578999999999999999988765 47899999999997644
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.28 E-value=5.9e-06 Score=59.47 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=60.7
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSAC 83 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~ 83 (94)
+.|+.|||+|++.++|..++...... .+.|+++.+.++... .. +-|.|.-+.+|-+-|..+|++|
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a~~~-----------~~--l~v~nl~~~~t~~~l~~~F~~~ 120 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGT--ILKSRPLRIRFATHG-----------AA--LTVKNLSPVVSNELLEQAFSQF 120 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCS-----------SE--EEEESCCTTCCHHHHHHHHGGG
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCc--EECCceeEeeecccC-----------Cc--ccccCCCCCCCHHHHHHHHHhc
Confidence 56889999999999999999876644 789999999998641 11 4678999999999999999999
Q ss_pred cceEEEEE
Q psy9170 84 QVYLIVCV 91 (94)
Q Consensus 84 g~~~~v~~ 91 (94)
|.+.-|-+
T Consensus 121 G~i~~v~i 128 (261)
T 3sde_A 121 GPVEKAVV 128 (261)
T ss_dssp SCEEEEEE
T ss_pred CCeEEEEe
Confidence 98766544
No 22
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.24 E-value=9e-06 Score=58.36 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=60.2
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSA 82 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~ 82 (94)
.+.|+.|||+|++.++|..++...... .+.|+++.++++.. +.. +-|.|.-+.+|-+-|..+|++
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~-----------~~~--l~v~nlp~~~t~~~l~~~f~~ 118 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQS--RLRERELSVQLQPT-----------DAL--LCVANLPPSLTQQQFEELVRP 118 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCC-----------SCE--EEEESCCTTCCHHHHHHHHGG
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCC--eeCCeEEEEEecCC-----------CCE--EEEcCCCCcCCHHHHHHHHHh
Confidence 356889999999999999999887655 58999999998542 222 346899999999999999999
Q ss_pred ccceEEEEE
Q psy9170 83 CQVYLIVCV 91 (94)
Q Consensus 83 ~g~~~~v~~ 91 (94)
||.+.-+-+
T Consensus 119 ~G~i~~~~i 127 (284)
T 3smz_A 119 FGSLERCFL 127 (284)
T ss_dssp GSCEEEEEE
T ss_pred cCCeeEEEE
Confidence 998765544
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.20 E-value=3e-06 Score=57.97 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=61.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc------CCCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD------QTHSNALLLHLTIGIILRPATHYQVHL 78 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~------~s~~~n~ILL~TI~n~~ypItvdvlh~ 78 (94)
.|..|||+|++.++|..+++..... .+.|+++.+.++....-..+ ....+.+.|. |.|.-+.+|-+-|..
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nlp~~~t~~~l~~ 144 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSV--MLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIY--VASVHQDLSDDDIKS 144 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSC--CCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEE--EECCCTTCCHHHHHH
T ss_pred cCceEEEEeCCHHHHHHHHHHccCC--eeCCeeEEEecCCCccccchhhhhhhcccCCCcEEE--EeCCCCcCCHHHHHH
Confidence 4789999999999999999977654 68899999988775432111 0112334443 678889999999999
Q ss_pred hhccccceEEEEE
Q psy9170 79 IRSACQVYLIVCV 91 (94)
Q Consensus 79 i~s~~g~~~~v~~ 91 (94)
+|++||.+.-|-+
T Consensus 145 ~f~~~G~v~~v~i 157 (216)
T 2qfj_A 145 VFEAFGKIKSATL 157 (216)
T ss_dssp HHTTSSCEEEEEE
T ss_pred HHhccCCeeEEEE
Confidence 9999997766544
No 24
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.20 E-value=8.2e-06 Score=58.80 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc--CCCCCCcEEEEEEcccCCc-eeHhHHHhhhc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD--QTHSNALLLHLTIGIILRP-ATHYQVHLIRS 81 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~--~s~~~n~ILL~TI~n~~yp-Itvdvlh~i~s 81 (94)
.+..|||+|++.++|..++...... .+.|+++.+.++..+.-... ....+++.|. |.|.-+. +|-|-|..+|+
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~--v~nlp~~~~t~~~l~~~F~ 233 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGL--KIEGYTLVTKVSNPLEKSKRTDSATLEGREIM--IRNLSTELLDENLLRESFE 233 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCC---------CCTTTEEE--EEEECTTTCCHHHHHHHHG
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCcccccccccCCCCceEE--EECCCcccCCHHHHHHHHh
Confidence 4678999999999999999977654 78999999999986544322 1234455554 5688888 99999999999
Q ss_pred cccceEEEE
Q psy9170 82 ACQVYLIVC 90 (94)
Q Consensus 82 ~~g~~~~v~ 90 (94)
+||.+.-|-
T Consensus 234 ~~G~v~~v~ 242 (292)
T 2ghp_A 234 GFGSIEKIN 242 (292)
T ss_dssp GGSCEEEEE
T ss_pred ccCCeeEEE
Confidence 999876553
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.16 E-value=5.3e-06 Score=54.75 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=61.3
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCce-EeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQ-LRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSA 82 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~ 82 (94)
+.|..|||||++.++|..++......... -+++++.+.++..+.-.. .+++- +-|.|.-+.+|-+-|..+|++
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNA----VEDRK--LFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSC----GGGSE--EEEESCCTTCCHHHHHHHHGG
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccccc----CCCCe--EEEcCCCCcCCHHHHHHHHHh
Confidence 35678999999999999999887654332 347888888887654322 22333 356799999999999999999
Q ss_pred ccceEEEEE
Q psy9170 83 CQVYLIVCV 91 (94)
Q Consensus 83 ~g~~~~v~~ 91 (94)
||.+.-|-+
T Consensus 119 ~G~i~~v~~ 127 (175)
T 3nmr_A 119 FGQIEECRI 127 (175)
T ss_dssp GSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 998765544
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.15 E-value=9e-06 Score=58.36 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=63.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCce-eHhHHHhhhcccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPA-THYQVHLIRSACQ 84 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypI-tvdvlh~i~s~~g 84 (94)
|..|||||++.++|..++...... .+.|+++.+.++..+..... ..+++.|. |.|.-+.+ |-|-|..+|++||
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~v~~a~~~~~~~~--~~~~~~l~--v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLYVHWTDAGQLTPA--LLHSRCLC--VDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCGGGCCTT--TTSCSEEE--EECCCTTCCCHHHHHHHTCSSS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCCCCcc--cCCccEEE--EecCCcccCCHHHHHHHhhCCC
Confidence 567999999999999999877654 78999999999988765432 23344443 68888887 7899999999999
Q ss_pred ceEEEEE
Q psy9170 85 VYLIVCV 91 (94)
Q Consensus 85 ~~~~v~~ 91 (94)
.+.-|-+
T Consensus 211 ~i~~v~i 217 (284)
T 3smz_A 211 SPTFCQL 217 (284)
T ss_dssp CCSEEEE
T ss_pred CeEEEEE
Confidence 7655543
No 27
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.14 E-value=6.9e-06 Score=57.36 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=62.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
.|..|||||++.++|..++...... .+.|+++.+.++....-.... ...+ +-|.|.-+.+|-+-|..+|++||
T Consensus 56 ~~G~afV~F~~~~~A~~Ai~~~~~~--~~~g~~i~~~~~~~~~~~~~~--~~~~---l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 56 SLGYAYVNFQQPADAERALDTMNFD--VIKGKPVRIMWSQRDPSLRKS--GVGN---IFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCCTHHHHH--CTTE---EEEESCCTTCCHHHHHHHHGGGS
T ss_pred ccccccceeCCHHHHHHHHHHhhhh--hcCCccccccccccccccccc--cccc---ceECCcccccHHHHHHHHHhhcC
Confidence 3568999999999999999876644 788999999988765433221 2233 34789999999999999999999
Q ss_pred ceEEEEE
Q psy9170 85 VYLIVCV 91 (94)
Q Consensus 85 ~~~~v~~ 91 (94)
.+.-|-+
T Consensus 129 ~i~~~~i 135 (213)
T 4f02_A 129 NILSCKV 135 (213)
T ss_dssp CEEEEEE
T ss_pred CeEEEEe
Confidence 7766544
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.96 E-value=4.6e-06 Score=54.94 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=57.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
.|..|||||++.++|..++.. ...+.|+++.+.++..+.-.. +++- +-|.|.-+.+|-+-|..+|++||
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v~~~~~~~~~~-----~~~~--l~V~nlp~~~t~~~l~~~F~~~G 112 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDPKRAIPRDEQD-----KTGK--IFVGGIGPDVRPKEFEEFFSQWG 112 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHS----CCEETTEECCCEECCCHHHHH-----HCEE--EEEEEECTTCCHHHHHHHHHTTS
T ss_pred ccceEEEEEccHHHHHHHHhc----ccccCCeEcccccccchhhcc-----CCCe--EEECCCCCCCCHHHHHHHHHhCc
Confidence 467899999999999999984 347899999998876543211 1222 35688889999999999999999
Q ss_pred ceEEE
Q psy9170 85 VYLIV 89 (94)
Q Consensus 85 ~~~~v 89 (94)
.+.-|
T Consensus 113 ~i~~~ 117 (167)
T 2cjk_A 113 TIIDA 117 (167)
T ss_dssp CCSEE
T ss_pred cEEEE
Confidence 76544
No 29
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.89 E-value=1.5e-05 Score=55.92 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.|++||.+.|.|..|++|.|.|+++|++||.++-|-+
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i 78 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT 78 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 56899999999999999999999999999997766554
No 30
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.89 E-value=3.6e-05 Score=55.37 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=55.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
.+..|||||.+.++|..+++. +...+.|+++.+.++. ++-| -|.|.-+.+|-+-|..+|++||
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~---~~~~~~g~~i~v~~~~------------~~~l--~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITK---THKVVGQNEIIVSHLT------------ECTL--WMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTT---TTCEETTEECEEEECC------------SCEE--EEECCCTTCCHHHHHHHHHHTT
T ss_pred CcEEEEEEECCHHHHHHHHHh---CCcEeCCcEEEEEECC------------CCEE--EEECCCCCCCHHHHHHHHHHhC
Confidence 478999999999999999962 5568999999999873 2222 3578889999999999999999
Q ss_pred -ceEEE
Q psy9170 85 -VYLIV 89 (94)
Q Consensus 85 -~~~~v 89 (94)
.+.-|
T Consensus 143 ~~i~~v 148 (292)
T 2ghp_A 143 VVALSI 148 (292)
T ss_dssp CCCCEE
T ss_pred CCeEEE
Confidence 65544
No 31
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.75 E-value=5.9e-05 Score=50.89 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=37.4
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeC--eEEEEEeccceeeecc
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRG--RAVYVQFSNHKELKTD 51 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg--~~vyiqyS~~~eL~~~ 51 (94)
.||||||+|.++|..+++..... .+.| +++.++||+.++|.-.
T Consensus 67 fqAFVef~~~~~A~~Ai~~LnG~--~i~g~~~~LrI~~ak~~~l~v~ 111 (130)
T 3zzy_A 67 FQALLQYADPVSAQHAKLSLDGQ--NIYNACCTLRIDFSKLTSLNVK 111 (130)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTC--EEETTEEEEEEEECSCSSCCCC
T ss_pred cEEEEEECCHHHHHHHHHHcCCC--eecCCCcEEEEEecCCCceeEE
Confidence 48999999999999999998876 5666 8999999999988653
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.73 E-value=6.1e-05 Score=47.53 Aligned_cols=40 Identities=18% Similarity=0.359 Sum_probs=35.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhcc--CceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTC--VAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~--p~~irg~~vyiqyS~~ 45 (94)
|.-|||||++.++|.+++...... +..|.||++.++|++.
T Consensus 53 rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 53 RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred ceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 568999999999999999998854 4579999999999875
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.72 E-value=5.8e-05 Score=46.63 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=34.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..+++... +...+.|+++.++||+.+
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEEEECCCSC
T ss_pred cCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEEEEEcCCC
Confidence 46789999999999999987532 345799999999999864
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.49 E-value=0.00015 Score=42.93 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=34.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+..|||+|++.++|..++..+... .+.|+++.++++..+
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEECCCC
T ss_pred cceEEEEECCHHHHHHHHHHhcCC--eeCCcEEEEEecCcC
Confidence 678999999999999999977654 689999999999865
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00024 Score=43.83 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~ 51 (94)
.|..|||||++.++|..++..+.. ..+.|+++.+.+++.+.-...
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNE--SELFGRTIRVNLAKPMRIKES 97 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTT--EEETTEEEEEEECCCCCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCC--CEECCcEEEEEeCCCCCCCCC
Confidence 467899999999999999987654 478999999999988766554
No 36
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.45 E-value=0.00021 Score=47.26 Aligned_cols=82 Identities=10% Similarity=-0.004 Sum_probs=61.5
Q ss_pred CCceEEEEecCHHHHHHHHhhh-hccCceEeCeEEEEEeccceeeecc-----------CCCCCCcEEEEEEcccCCcee
Q psy9170 5 DEIQAFLEMADECAASTMVTYF-TTCVAQLRGRAVYVQFSNHKELKTD-----------QTHSNALLLHLTIGIILRPAT 72 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~-~~~p~~irg~~vyiqyS~~~eL~~~-----------~s~~~n~ILL~TI~n~~ypIt 72 (94)
-|.++++||.+.++|..++.-+ ... .+.| ++.+++++.+.-... ....+++-|. |.|.-+.+|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nl~~~~t 86 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVY--VGNLGNNGN 86 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEE--EESCCSCCS
T ss_pred ccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEE--EeCCCCCCC
Confidence 3789999999999999998777 443 6788 999998886543221 1123344443 579999999
Q ss_pred HhHHHhhhccccceEEEEE
Q psy9170 73 HYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 73 vdvlh~i~s~~g~~~~v~~ 91 (94)
-|-|..+|++||.+.-|-+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i 105 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWV 105 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHhhCCEEEEEE
Confidence 9999999999998766544
No 37
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.42 E-value=0.00017 Score=47.99 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.3
Q ss_pred eEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 8 QAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
||||||+|.++|..++.......+.=+++++.|+|++.+.|..
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~v 106 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNV 106 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCccee
Confidence 8999999999999999988766332233799999999988755
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.39 E-value=0.00026 Score=42.05 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=32.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
.|..|||||++.++|..++..+... .+.|+++.+++++
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~ak 85 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRVNLAK 85 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcC
Confidence 3678999999999999999876644 7899999999974
No 39
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00035 Score=42.52 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++...... .+.|+++.++++..+.-
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQ--YLCNRPITVSYAFKKDS 88 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTC--EETTEECEEEESCCCCC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEecccCC
Confidence 3678999999999999999977655 68999999999987654
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.39 E-value=0.00032 Score=42.98 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=37.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|..|||||++.++|..++...... .+.|+++.+.+++.+....
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 86 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGY--QLGSRFLKCGYSSNSDISG 86 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCSSGGG
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEcCCCCCCC
Confidence 678999999999999999877654 7899999999999866543
No 41
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.38 E-value=0.00015 Score=48.09 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+.|++|||||++.++|..++...... .+.|+++.|+|++.+.
T Consensus 70 ~~rG~aFV~F~~~~~A~~Ai~~lng~--~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 70 DNSGKAYIVFATQESAQAFVEAFQGY--PFQGNPLVITFSETPQ 111 (127)
T ss_dssp SSCCCEEEEESSHHHHHHHHHHSTTC--CCTTSCCEEEECCCCC
T ss_pred CcCCEEEEEECCHHHHHHHHHHHCCC--EeCCCEEEEEEccCcc
Confidence 45789999999999999999887655 6789999999998653
No 42
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=0.00034 Score=43.14 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|..|||||++.++|..++..+.. ..+.|+++.+.+++.+.
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNK--REIEGRAIRLELQGPRG 92 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSS--EEETTEEEEEEECSSCC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCC--CEeCCeEEEEEEcCCCC
Confidence 477999999999999999997664 47889999999998764
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.36 E-value=0.00026 Score=42.25 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=33.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEEC--
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEecCCC
Confidence 568999999999999999987654 789999999998754
No 44
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.34 E-value=0.00022 Score=49.86 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=36.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
+.+|||||+|.++|..++.......+.=.|+++.|+||+.+++..
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~v 128 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV 128 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccc
Confidence 569999999999999999988766332245999999999987754
No 45
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00029 Score=42.99 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=35.6
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
++....|||||++.++|..++...... .+.|+++.+.+++.++
T Consensus 51 ~~~~~~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 51 DSETAVVNVTYSSKDQARQALDKLNGF--QLENFTLKVAYIPDEM 93 (96)
T ss_dssp SSSSEEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEEECCCCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCccc
Confidence 444555999999999999999976654 6789999999998764
No 46
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.33 E-value=0.00038 Score=42.43 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..++...... .+.|+++.++|++.+
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 50 MRGQAFVIFKEVSSATNALRSMQGF--PFYDKPMRIQYAKTD 89 (97)
T ss_dssp HTTCEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSSC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhCCC--EECCcEEEEEEccCC
Confidence 4678999999999999999987754 679999999999864
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.00046 Score=41.81 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=32.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||||++.++|..++..+.. ..+.|+++.++|++
T Consensus 58 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 58 KGVAFILFLDKDSAQNCTRAINN--KQLFGRVIKASIAI 94 (94)
T ss_dssp TTCEEEEESCHHHHHHHHHHTTT--EEETTEEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHcCC--CeeCCcEEEEEecC
Confidence 56899999999999999987664 47899999999975
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.32 E-value=0.0003 Score=44.10 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=32.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||||++.++|..++..+... .+.|+++.|+|++
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGL--RLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred cccEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEee
Confidence 457999999999999999887644 7899999999985
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00051 Score=42.45 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
.|..|||||++.++|..++...... .+.|+++.+++++.+.-.
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGR--KILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC--CcCCCeEEEEECCCCccc
Confidence 4679999999999999999977654 688999999999875543
No 50
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.00029 Score=43.41 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=34.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|+++.+++++.+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEEecCC
Confidence 568999999999999999987755 789999999999864
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.00038 Score=43.43 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=36.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhcc----CceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTC----VAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~----p~~irg~~vyiqyS~~~e 47 (94)
.|..|||||++.++|..++..+... ...+.|+++.+.++..++
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 4778999999999999999987633 568899999999998653
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.26 E-value=0.00039 Score=42.13 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=33.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|..|||||++.++|..++..+.. ..+.|+++.+++++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 57 RGFAFVYFENVDDAKEAKERANG--MELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTT--EEETTEEEEEECCSC
T ss_pred ccEEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEecCC
Confidence 56899999999999999998764 478999999999874
No 53
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00065 Score=41.24 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=35.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++...... .+.|+++.+++++.+.-
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNT--EFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTE--EETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEccCCCC
Confidence 458999999999999999877654 68999999999987543
No 54
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00081 Score=41.27 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=36.9
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
+.|..|||+|++.++|..++...... .+.|+++.+.++..+.-
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQPM 89 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTE--EETTEEEEEECCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCCC
Confidence 56889999999999999999876654 67999999999987644
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00084 Score=41.45 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=37.5
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~ 51 (94)
|..|||+|++.++|..++..+... .+.|+++.+.++..+.....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEECCSSCCCCC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEcccCCCCCC
Confidence 678999999999999999877654 68999999999988765543
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.00044 Score=43.72 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=35.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++..+... .+.|+++.+++++.+.
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGT--VVEGRKIEVNNATARV 108 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTC--EETTEECEEEECCCSC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCc
Confidence 778999999999999999977655 6899999999998764
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.00035 Score=43.05 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=36.5
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+.|..|||||++.++|..++..+... .+.|+++.+++++.+.
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNM--PLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTC--CBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCC--EeCCceEEEEEcCCCC
Confidence 56889999999999999999887755 5789999999998754
No 58
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.20 E-value=0.00071 Score=41.99 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=34.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|+.|||||++.++|..++...... .+.|+++.+++++.+
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 57 NAFGFIQFDNPQSVRDAIEXESQE--MNFGKKLILEVSSSN 95 (97)
T ss_dssp SSEEEEEESSHHHHHHHHHHHTTS--EETTEECEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecCCC
Confidence 678999999999999999987654 788999999998754
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.20 E-value=0.00045 Score=41.91 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=32.5
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|.-|||||++.++|..++..+... .+.|+++.+++|++
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCC-
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEeccC
Confidence 567999999999999999876654 78999999999874
No 60
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.0004 Score=43.67 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
+.|..|||||++.++|..++..+... .+.|+++.++|++.+.-..
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGY--KLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTC--BCSSCBCEEEECCCCSCCC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEccCCCCCC
Confidence 34789999999999999999987754 5699999999998765433
No 61
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.00063 Score=42.70 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=35.5
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.=
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGK--DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTC--EETTEECEEECSSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCC--ccCCCEEEEEECCCCCC
Confidence 678999999999999999987655 68999999999987543
No 62
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.00072 Score=41.40 Aligned_cols=42 Identities=19% Similarity=0.027 Sum_probs=35.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++...... .+.|+++.+.+++.++-
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQ--VFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTE--ESSSCEEEEEECCCCST
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCCcc
Confidence 3578999999999999999876644 77899999999987654
No 63
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00064 Score=43.00 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=35.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++...... .+.|+++.+++++.+.
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNV--VVDGRTLKASLGTTKY 102 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTE--EETTEEEEEESCCCCS
T ss_pred CeEEEEEECcHHHHHHHHHHhCCC--EECCEEEEEEeccccc
Confidence 369999999999999999987655 6899999999998765
No 64
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00049 Score=41.95 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..++..... ..+.|+++.+++++.+
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQG--AEIDGRSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTE--EEETTEEEEEEECSSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCC--CEECCeEEEEEEcCCC
Confidence 367899999999999999997765 4789999999998754
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.00046 Score=42.23 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=36.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|.-|||||++.++|..++..+... .+.|+++.+++++.+.-.
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGH--TVDGHKLEVRISERATKP 91 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTC--EETTEECEEECSSCSSCC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEccCCCCC
Confidence 568999999999999999987654 789999999999876543
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.17 E-value=0.00061 Score=40.57 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
.|..|||||++.++|..++..+... .+.|+++.++++..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGG--QIDGQEITATAVLA 84 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCC--eECCeEEEEEECCC
Confidence 5778999999999999999977654 78999999998864
No 67
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00054 Score=43.55 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||||++.++|..++.. +...+.|+++.+.+++.++...
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL---HRKKLNGREAFVHVVTLEDMRE 98 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG---CSEEETTEEEEEEEECHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh---CCCccCCeEEEEEECCHHHHHH
Confidence 477899999999999999887 4568999999999999877544
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.00047 Score=41.83 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=35.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.-
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 47 KGYGFITFSDSECARRALEQLNGF--ELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CSEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEEEESSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEEcccccC
Confidence 568999999999999999987654 67899999999986543
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00043 Score=42.59 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=33.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+.. ..+.|+++.+.+++.+
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDG--MTIKENIIKVAISNSG 96 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTT--EESSSCEEEEEECCCC
T ss_pred EeEEEEEECCHHHHHHHHHHhCC--CEECCEEEEEEECCCC
Confidence 57899999999999999987765 4789999999998754
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.00057 Score=41.90 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=35.0
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEe--CeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLR--GRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir--g~~vyiqyS~~~ 46 (94)
++|..|||||++.++|..++...... .+. |+++.+++++.+
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 51 KGDSFAYIQYESLDAAQAACAKMRGF--PLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHHTTC--BCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCC--EeCCCCcEEEEEECCCC
Confidence 45789999999999999999987755 567 999999999764
No 71
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.16 E-value=0.00073 Score=43.25 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=37.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||||++.++|..++..+... .+.|+++.+++|..+....
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTE--ESSSCEEEEEEECCTTCCC
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEeCCCCCCC
Confidence 4679999999999999999977655 7899999999998766544
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.15 E-value=0.00047 Score=41.85 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=33.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|..|||||++.++|..++..+... .+.|+++.+++++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGI--RLYGRPINVSGPSS 94 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTC--EETTEECEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EECCCEEEEEEcCC
Confidence 568999999999999999977655 68999999999864
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00037 Score=42.96 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=35.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++..+... .+.|+++.+++++.+.-
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGK--SVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTC--CTTSCCCEEEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCC
Confidence 3668999999999999999887755 57899999999987654
No 74
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00053 Score=40.79 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
+.|+.|||+|++.++|..++.... +...+.|+++.++|++
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~-~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSF-NKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTT-TTCEETTEECCEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhc-CCeeECCCEEEEEecC
Confidence 457899999999999999999662 2457899999999874
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.00045 Score=42.71 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||+|++.++|..++..+... .+.|+++.+.+++.++-..
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 54 SKGFGFVCFSSPEEATKAVTEMNGR--IVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEECSSCCCCC
T ss_pred cCEEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEecccccCC
Confidence 4678999999999999999987755 5799999999998765443
No 76
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.14 E-value=0.00056 Score=41.38 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=36.5
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
+.|..|||||++.++|..++...... .+.|+++.++++....+
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQY--SFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTE--EETTEEEEEEECCCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCC--eECCcEEEEEEcCCCce
Confidence 56789999999999999999976644 78999999999876544
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.13 E-value=0.00087 Score=41.85 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=34.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|+++.+.++..+
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVK 106 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEcccC
Confidence 678999999999999999977654 789999999998764
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.13 E-value=0.00057 Score=42.54 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+.|..|||||++.++|..++.........+.|+++.+.+++.+.
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 45789999999999999999987533457899999999998654
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.13 E-value=0.00064 Score=42.17 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|..|||||++.++|..++..+... .+.|+++.+++++.
T Consensus 70 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~s 107 (107)
T 3ulh_A 70 LGTADVHFERKADALKAMKQYNGV--PLDGRPMNIQLVTS 107 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEEeCC
Confidence 568999999999999999987655 78999999999863
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.00061 Score=42.18 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCceEEEEecCHHHHHHHHhhh-hccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYF-TTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~-~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++... ... .+.|+++.+++++.+.-
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~--~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHST--HLYGRRLVLEWADSEVT 99 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCC--BSSSCBCEEEECCCCCC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCC--eECCCEEEEEeCCCCCC
Confidence 3678999999999999999987 443 67899999999987643
No 81
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00087 Score=41.20 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=35.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++...... .+.|+++.+++++.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 51 RDYAFVHFSNREDAVEAMKALNGK--VLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SSEEEEEESSHHHHHHHHHHHSSE--EETTEEEEEECCCCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCCC
Confidence 679999999999999999977654 7899999999998654
No 82
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.00031 Score=45.57 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
.||||+|++.++|.+++.-.... .+.||++.++|++.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~--~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENE--DVFGNRIIVSFTPK 83 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTC--CSSSSCCEEESSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCC--ccCCceEEEEecCC
Confidence 79999999999999999988866 56799999999985
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.00085 Score=41.15 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||||++.++|..+++ . +...+.|+++.+.+++.++-..
T Consensus 51 ~~g~afV~f~~~~~a~~A~~-~--~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN-M--HFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH-H--CCCBSSSCBCEEEECCCCCCCC
T ss_pred CCceEEEEECCHHHHHHHHH-h--CCCEECCeEEEEEECCCCcccC
Confidence 46789999999999999998 4 3447899999999998765443
No 84
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.10 E-value=0.00099 Score=41.90 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=36.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.-..
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAIQQMGGQ--WLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEEESSCCCCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEccCCCCCC
Confidence 568999999999999999987654 7999999999998765443
No 85
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.10 E-value=0.00071 Score=41.07 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=36.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++..... ...+.|+++.++++..+.-
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSG-KVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTT-TCEETTEECEEEECCCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccC-CeeECCEEEEEEEccCccc
Confidence 478999999999999999987665 2478999999999987543
No 86
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.10 E-value=0.00097 Score=41.35 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=36.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.-..
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGK--DLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCC--ccCCCEEEEEEcCCCcccc
Confidence 568999999999999999987655 6899999999998765433
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.00049 Score=43.81 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=38.5
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
++.|..|||||++.++|..++...... .+.|++++++|+....+..
T Consensus 43 ~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 88 (111)
T 1whx_A 43 PEGGITAIVEFLEPLEARKAFRHLAYS--KFHHVPLYLEWAPIGVFGA 88 (111)
T ss_dssp CSSSSCEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEEEETTTTCC
T ss_pred eCCCCEEEEEeCCHHHHHHHHHHhCCC--EECCeEEEEEECCCCccCC
Confidence 356789999999999999999987755 5789999999998765544
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.0011 Score=41.15 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=33.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++ ... ...+.|+++.++++..++
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~--g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLN--EESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGG--TCEETTEECEEEECCCCC
T ss_pred CeEEEEEECCHHHHHHHH-hcC--CCEeCCcEEEEEEccCCC
Confidence 668999999999999999 444 347899999999998754
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.001 Score=41.59 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=36.8
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
++|..|||+|++.++|..++..+... .+.|+++.+.+++.+.-
T Consensus 59 ~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 59 PEKGYSFVRFSTHESAAHAIVSVNGT--TIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEECCCCCCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEecCCCCC
Confidence 34789999999999999999887654 78999999999987643
No 90
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.09 E-value=0.00076 Score=41.22 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=33.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|.-|||||++.++|..++...... .+.|+++.++++..
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDR--PIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTC--EETTEECEEEESSC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEcCC
Confidence 567999999999999999876654 78999999999874
No 91
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.08 E-value=0.00076 Score=44.18 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|..|||+|++.++|..++..+... .+.|+++.++|++..
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGY--VLFGKPMVVQFARSA 130 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTB--EETTEECEEEECCCS
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCC--EeCCcEEEEEECCCC
Confidence 45789999999999999999987654 689999999999764
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.00081 Score=41.52 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=34.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.-
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 57 KGFAFISFHRREDAARAIAGVSGF--GYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTC--EETTEECEEEESSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEECCCCCC
Confidence 457999999999999999987654 68999999999987543
No 93
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00071 Score=41.65 Aligned_cols=40 Identities=5% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||||++.++|..++. .... .+.|+++.+++++.++
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~--~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGL--KVFGNEIKLEKPKGRD 96 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGC--CBTTBCCEEECCSCCC
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCc--EECCcEEEEEEcCCCC
Confidence 46789999999999999998 5544 6789999999998654
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0011 Score=41.45 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|.-|||||++.++|..++...... .+.|+++.+++++.+.
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGY--DYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTC--EETTEECEEECCCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcccCC
Confidence 678999999999999999877654 7899999999998654
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00064 Score=41.13 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=35.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|+.|||||++.++|..++...... .+.|+++.+.++..+.-
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHY--KLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTC--BCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCC--ccCCcEEEEEECCCCCC
Confidence 678999999999999999877644 68999999999987544
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.05 E-value=0.00087 Score=42.27 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=36.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|.-|||||++.++|..++..+... .+.|+++.+++++.+.-..
T Consensus 67 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAIQSMNGF--QIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTC--EETTEECEEECCCCSCCCC
T ss_pred CccEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcCCCCcCC
Confidence 457999999999999999887654 7899999999998765433
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.0012 Score=40.66 Aligned_cols=39 Identities=13% Similarity=0.252 Sum_probs=33.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++...... .+.|+++.+++++.+
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~--~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRY--KIGSKKILVSLATGA 90 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTE--EETTEEEEEEECCCS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEcCCC
Confidence 678999999999999999987654 789999999998654
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.05 E-value=0.00083 Score=41.33 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=36.6
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++..+... .+.|+++.+++++.+.-
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEEEEccCCCC
Confidence 4789999999999999999987765 57999999999987653
No 99
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00051 Score=42.33 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
+.|..|||||++.++|..++...... .+.|+++.+.+++.
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANF--PFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTC--EETTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEeccC
Confidence 56889999999999999999876644 78899999988764
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.04 E-value=0.0005 Score=42.31 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=32.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||||++.++|..++..+... .+.|+++.+++++
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~--~~~g~~l~V~~A~ 99 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTC--BSSSSBCEEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--EeCCcEEEEEecC
Confidence 568999999999999999877755 6789999999874
No 101
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.03 E-value=0.00078 Score=42.83 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
.|..|||+|++.++|..++...... .+.||++.++||
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~--~~~Gr~i~v~~s 103 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNR--WFNGQPIHAELS 103 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTC--EETTEECCEEEC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCC--EECCEEEEEEEc
Confidence 4789999999999999999887655 789999999997
No 102
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0012 Score=41.69 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=34.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|..|||+|++.++|..++.. +...+.|+++.+.++..++
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEECCSSCC
T ss_pred cCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEEECCCCc
Confidence 367899999999999999987 4568999999999998654
No 103
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.00084 Score=40.58 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++. .. ...+.|+++.+.+++.+
T Consensus 50 ~g~afV~f~~~~~a~~A~~-~~--g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALK-CN--REYMGGRYIEVFREKSG 87 (91)
T ss_dssp EEEEEEECSSHHHHHHHHH-SC--SEEETTEEEEEEEESSC
T ss_pred ceEEEEEECCHHHHHHHHH-hC--CceeCCcEEEEEECCcC
Confidence 5689999999999999998 54 34789999999998765
No 104
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0007 Score=41.58 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=35.8
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.+.|..|||||++.++|..++..+... .+.|+++.+.+++.+
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGL--RLGTDTLRVALARQQ 94 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTC--CSSSSCCEEEECCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCC
Confidence 356889999999999999999877654 678999999998764
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.0012 Score=39.79 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=34.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+..|||||++.++|..++...... .+.|+++.+.+++.+.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGK--EVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEECCCCC
Confidence 458999999999999999987654 7899999999998763
No 106
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.01 E-value=0.00097 Score=42.47 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|.-|||||++.++|..++..+... .+.|+++.+.++..++
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~--~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSRK 84 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESSCCC
T ss_pred CceEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCcc
Confidence 567999999999999999877654 7899999999987643
No 107
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.01 E-value=0.00048 Score=44.98 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=38.2
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||+|++.++|..++...... .+.||++.++|+..+....
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~--~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGR--WFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTC--EETTEECEEEEECHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEEcHHHHHH
Confidence 4788999999999999999988766 8899999999998765543
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.00 E-value=0.001 Score=42.12 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=34.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|+.|||||++.++|..++...... .+.|+++.++|++.+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGK--SFANQPLEVVYSKLP 103 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTC--EETTEECEEESCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCC
Confidence 678999999999999999977655 679999999999764
No 109
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.00067 Score=41.97 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=35.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++..+... .+.|+++.+.+++.++-
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMI--KLYGKPIRVNKASAHNK 97 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSC--BCSSCBCEEEETTTTSC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCC--eECCeEEEEEECCCCCc
Confidence 3568999999999999999987654 68999999999987644
No 110
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.99 E-value=0.00075 Score=42.64 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=32.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||||++.++|..++..+... .+.|+++.++|++
T Consensus 82 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~ak 118 (118)
T 2khc_A 82 KCFGFVSFDNPDSAQVAIKAMNGF--QVGTKRLKVQLKK 118 (118)
T ss_dssp CCEEEEEEESSHHHHHHHHHCCCC--EETTEECCEEEC-
T ss_pred CcEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEecC
Confidence 678999999999999999976654 7899999999874
No 111
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.98 E-value=0.00078 Score=43.08 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=34.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||+|++.++|..++..+... .+.|+++.++++...
T Consensus 48 rG~aFV~f~~~~~A~~Ai~~lng~--~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 48 LGLARVLFTSTRGAKETVKNLHLT--SVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSTT
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCC
Confidence 568999999999999999987655 789999999998754
No 112
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.97 E-value=0.0015 Score=41.63 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=37.5
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
+.|..|||+|++.++|..++...... .+.||++.+.|+......
T Consensus 54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~--~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 54 DEAVRIFLEFERVESAIKAVVDLNGR--YFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCHHHHH
T ss_pred CCcEEEEEEECCHHHHHHHHHHHCCC--EECCcEEEEEEcCHHHhh
Confidence 34789999999999999999988766 789999999999865443
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.00057 Score=42.26 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++..+... .+.|+++.+.+++.+.-
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGA--ELDGRELRVQVARYGRR 95 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSC--CBTTBCCEEEECSSCCS
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEECCcCCC
Confidence 3678999999999999999987655 58999999999987543
No 114
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.96 E-value=0.0015 Score=43.10 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|..|||||++.++|..++...... .+.|+++.+.|++.+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEK 174 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEE--EETTEEEEEEECSSC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEecCCC
Confidence 45788999999999999999987754 789999999999754
No 115
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.00061 Score=42.22 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=33.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|+++.++++..+
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTC--BSSSSBCEEEESEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCC--EECCcEEEEEeecCC
Confidence 678999999999999999977655 678999999998754
No 116
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.0012 Score=41.34 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=35.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++...-.
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQ--LLFDRPMHVKMDERALPK 97 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECSCCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEEcccCCCC
Confidence 568999999999999999977654 689999999999865443
No 117
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.93 E-value=0.0012 Score=42.23 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|..|||||++.++|..++..+... .+.|+++.+.+++.+.-..
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKDMNGK--SLHGKAIKVEQAKKPSFQS 90 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHHCSSC--BCSSSBCEEEECCCSSCSS
T ss_pred cccEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEECCCCCCCC
Confidence 4678999999999999999876654 6899999999998766544
No 118
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.91 E-value=0.002 Score=41.04 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
+.|..|||||++.++|..++...... .+.||++.+.|+.....
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~--~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGR--KFANRVVVTKYCDPDSY 99 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECHHHH
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC--EeCCCEEEEEEeCHHHH
Confidence 34788999999999999999988766 78999999999876543
No 119
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0017 Score=42.71 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=36.3
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCc---eEeCeEEEEEeccceeee
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVA---QLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~---~irg~~vyiqyS~~~eL~ 49 (94)
+.+|.-|||||++.++|..+++......+ .=.|+++|+.|...-.-.
T Consensus 60 ~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 60 PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 34678999999999999999998776522 115999999998754443
No 120
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0013 Score=42.56 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=32.7
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||+|++.++|..++...... .+.|+++.+.|++
T Consensus 129 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~a~ 165 (166)
T 3md3_A 129 RGYGFVSFTSQDDAQNAMDSMQGQ--DLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTC--EETTEECEEEESC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC--ccCCcEEEEEecC
Confidence 557999999999999999987655 6899999999986
No 121
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.85 E-value=0.0018 Score=41.59 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
.|..|||||++.++|..++...... .+.|+++.++++
T Consensus 104 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~A 140 (140)
T 2ku7_A 104 HRGFAFVEFELAEDAAAAIDNMNES--ELFGRTIRVNLA 140 (140)
T ss_dssp CCSEEEEEESCHHHHHHHHHHSTEE--EETTEEEEEEC-
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEeC
Confidence 4778999999999999999876654 788999999875
No 122
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0018 Score=40.85 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|.-|||||++.++|..++..... .+.|+++.+.++..+.-
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~---~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP---IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC---EETTEECEEEESTTTCC
T ss_pred cceEEEEEECCHHHHHHHHHhCCC---cCCCEEEEEEEcccCCC
Confidence 356899999999999999988663 79999999999976543
No 123
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.82 E-value=0.0014 Score=42.50 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=36.3
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
+.|..|||+|++.++|..++...... .+.|+++.+.+++.+.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~--~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGT--QVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTC--BCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEEeCCCC
Confidence 56889999999999999999877655 6799999999998754
No 124
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.82 E-value=0.0013 Score=41.19 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|..|||||++.++|..++...... .+.|+++.+.+++...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGR--VLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTC--EETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCCC
Confidence 3678999999999999999877654 7899999999997543
No 125
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.82 E-value=0.0011 Score=42.92 Aligned_cols=42 Identities=7% Similarity=0.152 Sum_probs=35.7
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.-.
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGF--NILNKRLKVALAASGHQR 125 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTE--ECSSCEEEEEESSCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 668999999999999999976644 689999999999876543
No 126
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.81 E-value=0.0027 Score=41.89 Aligned_cols=84 Identities=6% Similarity=-0.067 Sum_probs=50.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhcc-----CceEeCeEEEEEeccceeeec-cCCCCCCcEEEEEEcccCCceeHhHHHh
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTC-----VAQLRGRAVYVQFSNHKELKT-DQTHSNALLLHLTIGIILRPATHYQVHL 78 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~-----p~~irg~~vyiqyS~~~eL~~-~~s~~~n~ILL~TI~n~~ypItvdvlh~ 78 (94)
-|..|||||.+.++|..++.-+... .....+............... .....+..-| =|.|.-+.+|-|-|..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSL--KVDNLTYRTSPDTLRR 89 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEE--EEESCCTTCCHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEE--EEeCCCCCCCHHHHHH
Confidence 4688999999999999998765532 112222211111111111000 1112233443 3679999999999999
Q ss_pred hhccccceEEEE
Q psy9170 79 IRSACQVYLIVC 90 (94)
Q Consensus 79 i~s~~g~~~~v~ 90 (94)
+|++||.+.-|-
T Consensus 90 ~F~~~G~v~~~~ 101 (158)
T 2kn4_A 90 VFEKYGRVGDVY 101 (158)
T ss_dssp HHHHHSCEEEEE
T ss_pred HHHhcCCeEEEE
Confidence 999999776543
No 127
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.80 E-value=0.0012 Score=43.05 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=33.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||+|++.++|..++. .+...+.|+++.+.++..+
T Consensus 129 ~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ---NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH---CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh---CCCEEeCCeEEEEeecCCC
Confidence 5689999999999999997 3556889999999998765
No 128
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.79 E-value=0.00074 Score=44.24 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|..|||||++.++|..++..+... .+.|+++.++++..+
T Consensus 86 ~~~G~afV~F~~~~~A~~Ai~~lng~--~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 86 RSRGFAFVYFENVDDAKEAKERANGM--ELDGRRIRVDFSITK 126 (129)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEESCCSSS
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEecCC
Confidence 34678999999999999999987654 678999999998754
No 129
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.79 E-value=0.00067 Score=42.96 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=33.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+
T Consensus 68 ~g~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 68 KGYGFITFSDSECAKKALEQLNGF--ELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTC--CSSSSCCEEECSCSS
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEEcccC
Confidence 568999999999999999877654 689999999998754
No 130
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.78 E-value=0.0029 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ 41 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq 41 (94)
+.|..|||||++.++|..++ .... ..+.|+++.++
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g--~~~~g~~l~V~ 85 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDG--IIFQGQSLKIR 85 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTT--CEETTEECEEE
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCC--CEECCeEEEEe
Confidence 45889999999999999999 5543 47899998876
No 131
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.77 E-value=0.00066 Score=40.94 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=34.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|..|||||++.++|..++..+... .+.|+++.+.+++.+.
T Consensus 47 ~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 47 SKGCGVVKFESPEVAERACRMMNGM--KLSGREIDVRIDRNAS 87 (92)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTC--CBTTBCCCCEECSCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC--EECCcEEEEEEcCCCC
Confidence 3678999999999999999987655 5889999999987643
No 132
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.77 E-value=0.0019 Score=39.84 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=33.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++ -. +...+.|+++.+.+++.+.-
T Consensus 56 ~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 56 KGFCYVEFDEVDSLKEAL-TY--DGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEEEESSHHHHHHHG-GG--TTCEETTEECEEEECCCCCC
T ss_pred ceEEEEEECCHHHHHHHH-hh--CCCeECCeEEEEEEecCCCC
Confidence 568999999999999999 43 44689999999999986543
No 133
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.76 E-value=0.0026 Score=40.18 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=33.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||+|++.++|..++... ...+.|+++.+.++..++
T Consensus 67 kg~afV~f~~~~~A~~Ai~~~---~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 67 RGFGFVTFMDQAGVDKVLAQS---RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp TTCEEEEESSHHHHHHHHHSS---CEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHC---CCcCCCEEEEEEEccCCC
Confidence 678999999999999999874 268999999999987543
No 134
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.0009 Score=41.46 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=34.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++.. +...+.|+++.+.+++.++-
T Consensus 58 ~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 58 RGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp EEEEEEEESSTTHHHHHHHH---CSEEETTEEEBCCCSCCSSC
T ss_pred ceEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEccCCCC
Confidence 46899999999999999987 56789999999999986654
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.00089 Score=41.11 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=34.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++...... .+.|+++.+++++.+.-
T Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 45 NAFGFIQFDNPQSVRDAIECESQE--MNFGKKLILEVSSSNAR 85 (96)
T ss_dssp TTEEEEEESCHHHHHHHHHHHTCS--SCBTTTBCEEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCC--eeCCcEEEEEEcCcCCC
Confidence 678999999999999999987655 56799999999976543
No 136
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.75 E-value=0.0024 Score=38.04 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=31.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
|.-|||||++.++|..++ ... ...+.|+++.+++++.
T Consensus 48 ~g~afV~f~~~~~a~~a~-~~~--g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSL-ALD--ESLFRGRQIKVIPKRT 84 (89)
T ss_dssp CEEEEEEESSTHHHHHHG-GGT--TCEETTEECEEEETTT
T ss_pred ceEEEEEECCHHHHHHHH-hcC--CCEECCcEEEEEEccC
Confidence 678999999999999999 443 4478999999999864
No 137
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.73 E-value=0.00058 Score=41.50 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++...... .+.|+++.+.++...
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~--~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTPSNKL 83 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGS--CSSSCCCEECCC---
T ss_pred CcEEEEEECCHHHHHHHHHHcCCC--eeCCEEEEEEECCCC
Confidence 567999999999999999887765 679999999988754
No 138
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.0021 Score=39.62 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=32.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++.- ...+.|+++.+.+++.++
T Consensus 57 ~g~afV~f~~~~~a~~A~~~----~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 57 KGFGFVRFTEYETQVKVMSQ----RHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHS----CEEETTEEEEEECCCTTC
T ss_pred cceEEEEECCHHHHHHHHHc----CCeeCCeEEEEEecCCCC
Confidence 55799999999999999983 348999999999998753
No 139
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.00069 Score=41.74 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=34.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++..+... .+.|+++.+.++..+.-
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGR--EFSGRALRVDNAASEKN 90 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSB--SCSSSCBEEEETTCTTH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--eeCCcEEEEEeCCCccc
Confidence 678999999999999999877654 57999999999987543
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.72 E-value=0.0035 Score=40.47 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|.-|||||++.++|..++..+... .+.|+++.+.+++..
T Consensus 65 ~~rGfaFV~F~~~e~A~~Ai~~lng~--~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 65 DFDGTGALEFPSEEILVEALERLNNI--EFRGSVITVERDDNP 105 (111)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHTTTE--EETTEEEEEEESCC-
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECCCC
Confidence 45789999999999999999877644 789999999998753
No 141
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.71 E-value=0.0016 Score=41.55 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=34.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++..+... .+.|+++.++|+..+.
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQ--DLMGQPISVDWCFVRG 103 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEESEESS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--eeCCeEEEEEEecCCC
Confidence 678999999999999999987654 5799999999997654
No 142
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.70 E-value=0.0016 Score=45.64 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEeccce
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSNHK 46 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~~~ 46 (94)
++.|+.|||||++.++|..++...... .+. |+++.+.|++.+
T Consensus 186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~--~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QKDRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST 228 (229)
T ss_dssp SSSTTCEEEEESSHHHHHHHHHHHTTC--BSSSSCBCEEEECSSC
T ss_pred ECCCcEEEEEECCHHHHHHHHHHHCCC--ccCCCCeEEEEEecCC
Confidence 557889999999999999999988765 457 999999998753
No 143
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.67 E-value=0.0012 Score=44.73 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEeccce
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSNHK 46 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~~~ 46 (94)
+.+|+.|||||++.++|..++...... .+. |+++.+.|++.+
T Consensus 155 ~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QKDRKMALIQMGSVEEAVQALIDLHNH--DLGENHHLRVSFSKST 197 (198)
T ss_dssp STTSSCEEEECSSHHHHHHHHHHHTSS--CCSSCCSCCEEEECCC
T ss_pred eCCCcEEEEEeCCHHHHHHHHHHhcCC--ccCCCCeEEEEeeccc
Confidence 456889999999999999999988766 457 999999998753
No 144
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.63 E-value=0.0024 Score=39.47 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=34.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCc-eEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVA-QLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~-~irg~~vyiqyS~~~e 47 (94)
.|..|||+|++.++|..++........ ...|+++.+.++..+.
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 367899999999999999997765421 1278999999998654
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.63 E-value=0.0025 Score=42.07 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||+|++.++|..++...... .+.|+++.+.+++.+.
T Consensus 111 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 111 SRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGR 151 (158)
T ss_dssp SCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCC
Confidence 4668999999999999999876654 6899999999998653
No 146
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.0022 Score=40.31 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||||++.++|..++ .+. ...+.|+++.+++++.+.
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~--g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLT--GQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHT--TEEETTEEEEEEEHHHHH
T ss_pred cCcEEEEEeCcHHHHHHHH-HcC--CCEeCCeEEEEEecCCCc
Confidence 3678999999999999999 544 447899999999987643
No 147
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.62 E-value=0.0018 Score=41.57 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=35.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|.-|||||++.++|..++. . +...+.|+++.+.+|+.++...
T Consensus 61 ~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~~a~~~~~~~ 102 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALK-K--DRESMGHRYIEVFKSHRTEMDW 102 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGG-G--TTEEETTEEEEEEEECHHHHHH
T ss_pred CeEEEEEECCHHHHHHHHh-c--CCCeECCeEEEEEECCHHHHHH
Confidence 5689999999999999999 4 3458999999999999887543
No 148
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.60 E-value=0.0014 Score=40.57 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|.-|||||++.++|..++ -.. ...+.|+++.+++++.+
T Consensus 60 ~~g~afV~f~~~~~a~~Ai-~l~--g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL-SLN--EESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH-HTT--TCCBTTBCCCCEECCCS
T ss_pred cCeEEEEEECCHHHHHHHH-hcC--CCEECCeEEEEEeccCC
Confidence 3678999999999999999 444 34689999999998753
No 149
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.59 E-value=0.0019 Score=39.82 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeC---eEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRG---RAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg---~~vyiqyS~~~eL 48 (94)
|..|||+|++.++|..++...... .+.| +++.++++..+.-
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGS--QTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSC--CCCTTCSSCCEEEESCSSCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCC--ccCCCCCccEEEEECccCcc
Confidence 678999999999999999977655 4666 9999999987654
No 150
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.59 E-value=0.0023 Score=39.90 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|.-|||||++.++|..++.. . --.+.||++.+..++.+++..
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~--~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-H--KERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-T--TCCSSSSCCEEEEECTTTSCC
T ss_pred cceEEEEEECCHHHHHHHHHh-C--cchhCCcEEEEEECCHHHHHH
Confidence 367899999999999999987 3 457899999999998887754
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.58 E-value=0.0028 Score=39.79 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhcccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g 84 (94)
.+..|||||++.++|..++...... .+.|+++.++|++.+.-. .|.....+-+-|-.+|++||
T Consensus 46 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~---------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 46 TRGTAYVVYEDIFDAKNAVDHLSGF--NVSNRYLVVLYYNANRAF---------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHTTC--BSSSCBCEEEECCHHHHT---------------TTSCHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEecCChhh---------------hhhhHhHhHHHHHHHHHHhC
Confidence 4679999999999999999987655 678999999999864322 12233455666777777776
Q ss_pred c
Q psy9170 85 V 85 (94)
Q Consensus 85 ~ 85 (94)
.
T Consensus 109 ~ 109 (115)
T 3lqv_A 109 I 109 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.57 E-value=0.0016 Score=44.15 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++...... .+.|+++.+.|+..+..
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLF--DLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--BCSSSBCEEEECSSCSS
T ss_pred CceEEEEecCHHHHHHHHHHccCC--EeCCcEEEEEEecCCCC
Confidence 678999999999999999988765 68999999999987644
No 153
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.54 E-value=0.0018 Score=39.50 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=33.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeE----EEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRA----VYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~----vyiqyS~~~ 46 (94)
|..|||||++.++|..++..+... .+.|++ +.++|++..
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 52 AGYCFVEFADLATAEKCLHKINGK--PLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEEEEEECSCHHHHHHHHHTTTTS--EESSCSSCEECCEEETTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHcCC--ccCCCCcceeEEEeecCCC
Confidence 468999999999999999877654 788998 999998765
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.54 E-value=0.0025 Score=41.73 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=32.4
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
|..|||+|++.++|..++...... .+.|+++.+.+++
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~V~~As 172 (172)
T 2g4b_A 136 KGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEEESSTTHHHHHHHHHTTC--EETTEECEEEECC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCC--EECCeEEEEEeCC
Confidence 567999999999999999977654 7899999999974
No 155
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.53 E-value=0.003 Score=41.79 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=33.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|.-|||||++.++|..++..+... .+.|+++.|++++..
T Consensus 81 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 81 CGFCFVEYYSRADAENAMRYINGT--RLDDRIIRTDWDAGF 119 (156)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTS--EETTEECEEEEESCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCC
Confidence 568999999999999999977644 789999999999763
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.0018 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=34.3
Q ss_pred eEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeecc
Q psy9170 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTD 51 (94)
Q Consensus 8 QAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~ 51 (94)
.|||||++.++|..++. .. ...+.|+++.++++..++-...
T Consensus 47 ~afV~f~~~~~a~~ai~-l~--g~~~~g~~l~V~~a~~~~~~~~ 87 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QS--QHSLGGHRLRVRPREQKEFQSP 87 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CS--CCEETTEECCCBCSCCSCCCCC
T ss_pred EEEEEECCHHHHHHHHh-cC--CeEECCEEEEEEECCcCCCCCC
Confidence 89999999999999999 54 4578999999998876655444
No 157
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.52 E-value=0.0018 Score=37.50 Aligned_cols=36 Identities=6% Similarity=0.050 Sum_probs=30.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
.|..|||||++.++|..++.. ....+.|+++.++++
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK---KYHNVGLSKCEIKVA 75 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT---SSCCBTTBCCCEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHh---CCCeECCEEEEEEEC
Confidence 367899999999999999984 445789999988764
No 158
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0044 Score=39.16 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|.-|||+|++.++|..++...... .+.|+++.++|+..+
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~--~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGR--WFGGRQITAQAWDGT 102 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTC--EETTEECEEEECCSC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCC--EECCcEEEEEEeCCC
Confidence 3778999999999999999877654 789999999998753
No 159
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.49 E-value=0.0022 Score=40.02 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=33.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCe-EEEEEeccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGR-AVYVQFSNH 45 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~-~vyiqyS~~ 45 (94)
.|..|||||++.++|..++...... .+.|+ ++.+++++.
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~l~g~--~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTFRVNLFTD 99 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHHCSSE--ECSTTCEEEEECSCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCc--ccCCCceEEEEEcch
Confidence 4789999999999999999976654 78898 999999874
No 160
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.48 E-value=0.0026 Score=36.94 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=29.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
|.-|||||++.++|..+++ . +...+.|+++.++++
T Consensus 41 ~g~afV~f~~~~~a~~a~~-~--~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCE-I--HFHEINNKMVECKKA 75 (75)
T ss_dssp CBEEEEECSCHHHHHHHHS-S--SCCCSSSCCCEEECC
T ss_pred CcEEEEEECCHHHHHHHHH-C--CCCEECCEEEEEEeC
Confidence 5689999999999999987 3 455789999988764
No 161
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0019 Score=37.49 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=30.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
|.-|||+|++.++|..++.... ..+.|+++.++++
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTT---CCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCC---CccCCEEEEEEec
Confidence 6789999999999999999866 5789999988765
No 162
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.46 E-value=0.002 Score=43.62 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=36.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|.-|||||++.++|..++..+... .+.|+++.+++++.+.+..
T Consensus 99 kGfaFV~f~~~~~A~~Ai~~lng~--~~~Gr~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 99 KGYAEVVVASENSVHKLLELLPGK--VLNGEKVDVRPATRQNLSQ 141 (156)
T ss_dssp EEEEEEEESCHHHHHHHHHHSTTC--EETTEECEEEECCHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCeEeEEEEcCCCcchh
Confidence 568999999999999999987655 7899999999998765543
No 163
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.43 E-value=0.0015 Score=39.20 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=30.7
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|.-|||||++.+ |..++...... .+.|+++.+.++..+..
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIRVTEANPKKS 82 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCSEEEC-----
T ss_pred ceEEEEEECCHH-HHHHHHHhCCC--EECCeEEEEEEcCCCCC
Confidence 668999999999 99998876654 58899999999987654
No 164
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.00091 Score=41.28 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=34.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCce-EeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQ-LRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~~vyiqyS~~~eL 48 (94)
.|..|||||++.++|..++...... . +.|+++.+.++..+.-
T Consensus 50 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 50 SKGYGFVKFTDELEQKRALTECQGA--VGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTC--CSSSSSCCCCCBCCCCCS
T ss_pred ccceEEEEECCHHHHHHHHHHccCC--cccCCEeEEEEEccCCCc
Confidence 3678999999999999999976654 4 7899999999976543
No 165
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.42 E-value=0.0018 Score=40.25 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeC-eEEEEEeccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRG-RAVYVQFSNH 45 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg-~~vyiqyS~~ 45 (94)
.|..|||+|++.++|..++...... .+.| +++.++++..
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~--~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGK--RLDLKHRLFLYTMKD 92 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTC--BSSSSCBCEEEESHH
T ss_pred cceEEEEEECCHHHHHHHHHHhCCc--ccCCCeEEEEEECch
Confidence 3678999999999999999877654 6788 9999998864
No 166
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.41 E-value=0.0032 Score=41.44 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=34.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..++...... .+.|+++.+.+++.+
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGE 148 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCC
Confidence 3789999999999999999977655 578999999998764
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.41 E-value=0.0026 Score=40.52 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||||.|.++|..++..... ..+.||++.+++.+..+
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~--~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNN--CVLANTTIFAESPSENE 82 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTT--EEETTEEEEEECCCHHH
T ss_pred CCcEEEEEECCHHHHHHHHHHhcC--CEECCcEEEEEECCHHH
Confidence 578899999999999999997664 58999999999986544
No 168
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.40 E-value=0.0056 Score=38.81 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..++ .+ +...+.|+++.+++++..
T Consensus 77 ~~g~afV~f~~~~~a~~A~-~l--~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 77 PKGYAYIEFAERNSVDAAV-AM--DETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp CEEEEEEEESSHHHHHHHH-TT--TTCEETTEECEEEESSCC
T ss_pred cccEEEEEECCHHHHHHHH-hc--CCCeECCeEEEEEECCCC
Confidence 3678999999999999999 33 345789999999998753
No 169
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.39 E-value=0.0023 Score=42.04 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|..|||||++.++|..++..+... .+.|+++.+++++.+.
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~--~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTC--CSSSSCCEEEECCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCCC
Confidence 3568999999999999999887755 5789999999998654
No 170
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.38 E-value=0.004 Score=40.68 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=35.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|.-|||||++.++|..++...... .+.||+|.+.|+.....
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr--~f~GR~i~v~~~~~~~f 111 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGR--WFAGRKVVAEVYDQERF 111 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEEECHHHH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCC--EECCcEEEEEEcChHhc
Confidence 467999999999999999998876 88999999999876543
No 171
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.34 E-value=0.00059 Score=43.20 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=35.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++..+... .+.|+++.+.+++.+.=
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGK--EFSGNPIKVSFATRRAD 97 (116)
Confidence 568999999999999999877654 67899999999987654
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.31 E-value=0.0061 Score=37.19 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||||++.++|.++.. ....++|+++.+.++..+.
T Consensus 47 srGfaFV~F~~~~~A~~~~~----~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCG----EDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTT----CEEEETTEEEEEEECC---
T ss_pred CCCEEEEEECCHHHHHHHcC----CCcccCCEEEEEEEcCCCC
Confidence 47899999999999996533 2567889999999987643
No 173
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.0013 Score=42.22 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=34.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|..|||||++.++|..++. . +-..+.|+++.+.+++.++.
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~--~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-R--HKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-S--CSBCSTTSCBEEEEECHHHH
T ss_pred CeEEEEEECCHHHHHHHHH-h--CCCeECCcEEEEEECCHHHH
Confidence 5689999999999999999 4 34578999999999988765
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.28 E-value=0.0023 Score=39.37 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=33.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
.|..|||||++.++|..++. +...+.|+++.+.++..+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT----CCCEETTEECEEEEEEEC
T ss_pred ccceEEEEECCHHHHHHHHh----CCCeECCEEEEEEECCcC
Confidence 46789999999999999998 556899999999988754
No 175
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.26 E-value=0.0054 Score=41.16 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=35.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|..|||+|++.++|..++..+... .+.|+++.|.++..+.-.
T Consensus 114 ~g~afV~f~~~~~A~~Ai~~l~g~--~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 114 KGYALVEYETHKQALAAKEALNGA--EIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEESEECC--
T ss_pred eeEEEEEECCHHHHHHHHHHhCCC--EECCEEEEEEEecCCCCC
Confidence 678999999999999999877654 789999999999865443
No 176
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.24 E-value=0.013 Score=36.55 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=34.2
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeC-----eEEEEEeccceee
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRG-----RAVYVQFSNHKEL 48 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg-----~~vyiqyS~~~eL 48 (94)
..|||||++.++|..++..+... .+.| +++.+++++.+.=
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~--~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSE--EEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcC--CccCCcCcceEEEEEeCCCCCC
Confidence 68999999999999999976654 6888 9999999987543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.16 E-value=0.007 Score=43.03 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEe-CeEEEEEecc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLR-GRAVYVQFSN 44 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~ir-g~~vyiqyS~ 44 (94)
+|..|||||++.++|..++...... .+. |+++.++|++
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGF--KITQNNAMKISFAK 281 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCc--EeCCCCEEEEEEec
Confidence 3579999999999999999987764 677 9999999986
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.0056 Score=36.67 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|.-|||||++.++|..+.. ....++|+++.+.++..++-
T Consensus 41 ~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEEecCCCCC
Confidence 47899999999999986533 25678999999999886544
No 179
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.11 E-value=0.0085 Score=35.59 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.1
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
|..|||+|++.++|..++.. ....+.|+++.++++
T Consensus 53 ~g~afV~f~~~~~a~~A~~~---~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 53 RGFGFILFKDAASVEKVLDQ---KEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEEEEESSTHHHHHHHHS---SCEEETTEEEEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHh---CCCEECCEEEEEEeC
Confidence 56799999999999999865 234699999998864
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.11 E-value=0.0058 Score=42.29 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=34.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
|..|||||++.++|..++...... .+.|+++.|.++..+
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~--~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGM--LLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--EETTEECEEEECCCH
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEcCCC
Confidence 568999999999999999887654 789999999998754
No 181
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.11 E-value=0.0023 Score=40.08 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=35.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
.|.-|||||++.++|..++. .. -..+.|+++.+.+++.++...
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~--~~~~~gr~i~V~~a~~~~~~~ 96 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE-KH--RMYMGQRYVEVYEINNEDVDA 96 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT-TT--TCCSSSSCCCCEECCHHHHHH
T ss_pred EeeEEEEEECCHHHHHHHHH-hC--cceeCCeEEEEEECCHHHHHH
Confidence 36689999999999999999 43 346899999999998876543
No 182
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.08 E-value=0.0052 Score=41.01 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=34.0
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+..|||||++.++|..++...... .+.|+++.+.+++.+
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGM--QLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTC--EETTEECEEEESCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC--EECCEEEEEEECCCC
Confidence 668999999999999999977654 789999999998754
No 183
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.0078 Score=38.24 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=32.1
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~ 46 (94)
+.|..|||||++.++|..++.... -+.|+++.+++.+.+
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~----~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEV----GLVDNPLKISWLEGQ 90 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCC----BCSSSBCEEECSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHhcC----CCCCCeEEEEEccCC
Confidence 457899999999999999998732 356999999997754
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.01 E-value=0.002 Score=42.73 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
.|.-|||||++.++|..++... .-.+.||+|.+..|+.+|+.
T Consensus 83 srGfaFV~F~~~e~A~~Al~~~---~~~l~gR~I~V~~a~~~e~~ 124 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGKH---KERIGHRYIEVFKSSQEEVR 124 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTTT---TCCBTTBCCCCEEECHHHHC
T ss_pred CceEEEEEECCHHHHHHHHHHC---CCEECCEEEEEEECCHHHhh
Confidence 3678999999999999999852 26789999999999887764
No 185
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.98 E-value=0.0069 Score=41.66 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||+|++.++|..++..+... .+.|+++.++++.....
T Consensus 128 ~kG~afV~F~~~~~A~~Ai~~lng~--~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 128 SLGTADVHFERRADALKAMKQYKGV--PLDGRPMDIQLVASQID 169 (177)
T ss_dssp CSCCEEEEESCHHHHHHHHHHSTTC--BCSSSBCEEEEESSGGG
T ss_pred EeeEEEEEeCCHHHHHHHHHHhCCC--EECCEEEEEEEecCCCC
Confidence 4678999999999999999977655 78999999999986544
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.97 E-value=0.0046 Score=40.14 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=30.9
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
+..|||||++.++|..++..+....+.-+++++.+.|+
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 46899999999999999998887733324499999885
No 187
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.96 E-value=0.0045 Score=41.28 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.7
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|.-|||||++.++|..++. ... ..+.||++.+..|+.++..
T Consensus 88 rG~aFV~F~~~e~a~~Al~-~~g--~~l~gr~i~V~~a~~~e~~ 128 (136)
T 2hgl_A 88 SGEAFVELGSEDDVKMALK-KDR--ESMGHRYIEVFKSHRTEMD 128 (136)
T ss_dssp EEEEEEECSSHHHHHHHHT-TTE--EESSSSEEEEEECCHHHHH
T ss_pred CeEEEEEECCHHHHHHHHh-cCC--CEECCEEEEEEECChHHHH
Confidence 5689999999999999998 443 4789999999999877654
No 188
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.95 E-value=0.0027 Score=41.14 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=35.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhcc--CceEeCeEEEEEecccee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTC--VAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~--p~~irg~~vyiqyS~~~e 47 (94)
.|.-|||||++. +|..++...... |..+.|+++.+.+++.++
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 467899999999 999999888764 558999999999998653
No 189
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.92 E-value=0.0031 Score=37.36 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCe-EEEE
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGR-AVYV 40 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~-~vyi 40 (94)
.|..|||||++.++|..++...... .+.|+ ++.+
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~~lng~--~~~g~~~l~V 80 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVKNADGY--KLDKQHTFRV 80 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHTTSSSC--CCSSSSCCCC
T ss_pred EeEEEEEEECCHHHHHHHHHHhcCc--ccCCceeEEe
Confidence 4789999999999999999876654 56777 6543
No 190
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.86 E-value=0.0063 Score=42.34 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=38.4
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
+.+..+||||++.++|..++...... .+.||+|.+.|+......
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr--~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGR--WFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTC--BSSSSBCEEEECCHHHHH
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCc--eECCeEEEEEEcCHHHhh
Confidence 55788999999999999999998877 789999999999865543
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.82 E-value=0.011 Score=39.26 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=31.7
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|..|||||++.++|..++.. +...+.|+++.+.++..++
T Consensus 146 ~g~afV~F~~~~~A~~A~~~---~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQ---KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHC---SCCEETTEECEEEECC---
T ss_pred cceEEEEECCHHHHHHHHHh---CCcEECCEEEEEEecCChh
Confidence 56799999999999999975 3558999999999998654
No 192
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.78 E-value=0.007 Score=38.15 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
.|.-|||||++.++|..++. . +...+.|+++.++++..
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~-~--~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE-T--PGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT-S--SCCCCTTTTCEEEEHHH
T ss_pred CccEEEEEECCHHHHHHHHH-c--CCCEECCEEEEEEEchH
Confidence 46789999999999999998 3 45578999999997653
No 193
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.63 E-value=0.019 Score=36.72 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=33.5
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|.-|||||++.++|..++.. +--.+.||+|.+..++.++.
T Consensus 55 ~~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~V~~a~~~~~ 95 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEALKR---NRMLMIQRYVEVSPATERQW 95 (109)
T ss_dssp CCSEEEEECSSHHHHHHHHHT---TTEEETTEEEEEEECCHHHH
T ss_pred CCeEEEEEECCHHHHHHHHhc---CCCeECCeEEEEEECCccch
Confidence 367899999999999999842 34589999999988876554
No 194
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.63 E-value=0.003 Score=37.51 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS 43 (94)
|.-|||||++.++|..++...... .+.|+.+.++++
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~~~~~~~ 82 (85)
T 1x4e_A 47 KGYGFVDFDSPSAAQKAVTALKAS--GVQAQMAKQSGP 82 (85)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHH--TCCEESCCSSCC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCC--eEeeEEEeecCC
Confidence 668999999999999999977655 466776655544
No 195
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.0092 Score=37.32 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=32.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e 47 (94)
|.-|||||++.++|..++.. +...+.||++.+..|+..+
T Consensus 55 ~G~afV~F~~~~~a~~Al~~---~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 55 TGEADVEFATHEDAVAAMAK---DKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEEEECSSSHHHHHHHTT---SSCCSSSSCCEEEEECCCC
T ss_pred eeEEEEEECCHHHHHHHHHh---CCCeECCcEEEEEECCCCC
Confidence 45799999999999999963 4467899999998887655
No 196
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.30 E-value=0.0078 Score=42.97 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
.|.-|||||++.++|..++..+... .|.|++|.|.+++.+.+.
T Consensus 111 skGfaFV~f~~~~~a~~Ai~~lng~--~~~Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMDLLPKR--ELHGQNPVVTPVNKQFLS 153 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHTTSTTS--CBTTBCCEEEECCHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHHcCCC--eECCEEeEEEECCCCccc
Confidence 3567999999999999999976654 689999999999876543
No 197
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.29 E-value=0.016 Score=36.16 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=30.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCce------EeCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQ------LRGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~------irg~~vyiqyS~ 44 (94)
|..|||+|++.++|..++..+....+. -.|+++.+.|++
T Consensus 66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 66 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 568999999999999999977654321 157888888876
No 198
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.25 E-value=0.012 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=29.6
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCe--EEEEEec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGR--AVYVQFS 43 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~--~vyiqyS 43 (94)
|..|||||++.++|..++...... .+.|+ ++.+.|+
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQ--KPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTC--CCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCC--ccCCCccceEEEeC
Confidence 567999999999999999988766 55665 5888774
No 199
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.04 E-value=0.031 Score=43.59 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
.|..|||+|++.++|..++..+... .|.|++|.|.++..+..
T Consensus 143 ~kG~aFV~F~~~e~A~~Ai~~lng~--~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 143 PRGYAFIEYEHERDMHSAYKHADGK--KIDGRRVLVDVERGRTV 184 (437)
T ss_pred ccceEEEeeccHHHHHHHHHHcCCC--EECCEEEEEEEeCCCCC
Confidence 3678999999999999999886654 78999999999986544
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.97 E-value=0.023 Score=41.55 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=35.8
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceE----------eCeEEEEEeccce
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQL----------RGRAVYVQFSNHK 46 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~i----------rg~~vyiqyS~~~ 46 (94)
+.|+.|||+|++.++|..++.......+.+ .|+++.|.+++..
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 468899999999999999999988775544 8999999999753
No 201
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.94 E-value=0.019 Score=37.30 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceE-eCeEEEEEecc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQL-RGRAVYVQFSN 44 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~i-rg~~vyiqyS~ 44 (94)
|..|||||++.++|..++.........- .|+++.+.|+.
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 136 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 5579999999999999998887653221 15899998863
No 202
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.85 E-value=0.036 Score=34.83 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 4 YDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 4 ~~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
+.|..|||||++.++|..++.... .+.|+.+.+..+.
T Consensus 50 ~~~G~aFV~f~~~~~a~~Ai~~~~----~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 50 PPKGYAFLLFQEESSVQALIDACL----EEDGKLYLCVSSP 86 (114)
T ss_dssp CTTSEEEECCSSHHHHHHHHHHSE----EETTEEEEEECCS
T ss_pred CcccEEEEEECCHHHHHHHHHhhh----hcCCcEEEeccCC
Confidence 347789999999999999998763 4788888887544
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.78 E-value=0.055 Score=41.50 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCCCceEEEEecCHHHHHHHHhhhhccCce-EeCe--EEEEEeccceeee
Q psy9170 3 DYDEIQAFLEMADECAASTMVTYFTTCVAQ-LRGR--AVYVQFSNHKELK 49 (94)
Q Consensus 3 ~~~KnQAfvEm~d~e~A~~~v~~~~~~p~~-irg~--~vyiqyS~~~eL~ 49 (94)
+++|.-|||||++.++|.++++........ ..|+ ++|+.|...-.++
T Consensus 53 ~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~ 102 (345)
T 3tht_A 53 PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWK 102 (345)
T ss_dssp CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEE
T ss_pred eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeeccccc
Confidence 457899999999999999999998866441 2245 8999998643333
No 204
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=94.60 E-value=0.041 Score=38.16 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.9
Q ss_pred CCceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEecc
Q psy9170 5 DEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN 44 (94)
Q Consensus 5 ~KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~ 44 (94)
.|+-|||||++.++|..++.... ..+.|+++.+...+
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~~~---~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVETPG---QKYKETDLLILFKD 185 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHCTT---CEETTEECEEEETT
T ss_pred cccEEEEEECCHHHHHHHHHhCC---CeECCEEEEEEEhH
Confidence 36789999999999999987542 38999999998765
No 205
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.13 E-value=0.017 Score=37.81 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=35.3
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeec
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~ 50 (94)
|.-|||||++.++|..++.. +--.+.||.|-+..++.+|...
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~---~~~~l~gR~i~V~~a~~~e~~~ 109 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRK---HKDLLGKRYIELFRSTAAEVQQ 109 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTT---TTEESSSCEECCEEECHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHh---CCCeeCCeEEEEEECCHHHHHH
Confidence 56799999999999999985 3357899999999988877654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.08 E-value=0.092 Score=33.46 Aligned_cols=36 Identities=8% Similarity=0.238 Sum_probs=29.9
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
.++||+|+|.++|.++++ .. -..+.||++-++..+.
T Consensus 50 d~~fVtF~d~~sAlaAi~-mn--G~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LN--GKELLNRTITIALKSP 85 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GT--TCEETTEEEEEEECCC
T ss_pred CCEEEEECChHHHHHHHh-cC--CeEeCCeEEEEEeCCC
Confidence 349999999999999998 44 4489999999997653
No 207
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=93.60 E-value=0.061 Score=33.95 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.0
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeCeE-----EEEEeccc
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRGRA-----VYVQFSNH 45 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~-----vyiqyS~~ 45 (94)
.-|||||++.++|..++..+... .+.|++ +.+..+..
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~--~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT--KFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC--BCCCTTSCCCBCEEEECC-
T ss_pred CEEEEEECCHHHHHHHHHHhCCC--EECCcEeeeEEEEeccCCC
Confidence 68999999999999999987755 678887 55555544
No 208
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=93.59 E-value=0.021 Score=38.16 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=32.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELK 49 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~ 49 (94)
|.-|||||++.++|..++.. +-..+.||++.+..++.++-.
T Consensus 86 rGfaFV~F~~~e~A~~Al~~---~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 86 TGEADVEFATHEEAVAAMSK---DRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp SCCCEEECSHHHHHHHHTTC---CSCSSSSCCCCCEECCCSCC-
T ss_pred ceEEEEEeCCHHHHHHHHhh---CCCEECCEEEEEEECCCCCCC
Confidence 56799999999999999832 445789999999888876543
No 209
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.24 E-value=0.17 Score=32.19 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
...|+++|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 17 ~~~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i 53 (100)
T 3r27_A 17 KTPASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVV 53 (100)
T ss_dssp CCCCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred cCCCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 346788876 5788899999999999999998876644
No 210
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.38 E-value=0.14 Score=36.30 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=33.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCc--eEeCeEEEEEecccee
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVA--QLRGRAVYVQFSNHKE 47 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~--~irg~~vyiqyS~~~e 47 (94)
+..|||||++.++|..++..+..... ...|+++.+.++...+
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 66899999999999999999854432 2348999999988654
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.32 E-value=0.24 Score=31.83 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=28.1
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEe
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQF 42 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqy 42 (94)
.++||+|+|.++|.++++ .. ...+.||++-+++
T Consensus 59 d~~fVtF~d~~sAl~AI~-ld--G~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 59 GQMLVTFADSHSALSVLD-VD--GMKVKGRAVKISG 91 (95)
T ss_dssp TEEEEECSCSHHHHHHHH-GG--GSEETTEEEEEEC
T ss_pred CcEEEEEcChHHHHHHHh-cC--CeeeCCeEEEEec
Confidence 459999999999999998 44 4589999998875
No 212
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=92.16 E-value=0.3 Score=32.37 Aligned_cols=80 Identities=9% Similarity=0.042 Sum_probs=28.3
Q ss_pred EEecCHHHHHHHHhhhhccCceEeCeEEEEEecccee------ee---------ccCCCCCCcEEEEEEcccCCceeHhH
Q psy9170 11 LEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE------LK---------TDQTHSNALLLHLTIGIILRPATHYQ 75 (94)
Q Consensus 11 vEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~e------L~---------~~~s~~~n~ILL~TI~n~~ypItvdv 75 (94)
.||++.++|...+.-.......-+|+..-...+.... +. .+....+++.|. |.|.-+.+|-+-
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~--V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILF--VTSIHEEAQEDE 88 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEE--EESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEE--EeCCCCCCCHHH
Confidence 5788888887777666655444445544433332211 10 011123355554 579989999999
Q ss_pred HHhhhccccceEEEEEE
Q psy9170 76 VHLIRSACQVYLIVCVL 92 (94)
Q Consensus 76 lh~i~s~~g~~~~v~~~ 92 (94)
|..+|+.||.+.-|-+.
T Consensus 89 L~~~F~~~G~i~~v~i~ 105 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLN 105 (165)
T ss_dssp HHHHHGGGSCEEEEEEE
T ss_pred HHHHhhcCCCEEEEEEE
Confidence 99999999987666543
No 213
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.18 E-value=0.58 Score=29.25 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=29.3
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
..|++.|.+ .|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 12 ~~p~~~l~V--~nLp~~~te~~L~~~F~~fG~V~~v~i 47 (104)
T 1wex_A 12 VSVSPVVHV--RGLCESVVEADLVEALEKFGTICYVMM 47 (104)
T ss_dssp CCCCSEEEE--ESCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEE--eCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 457788775 598899999999999999997766543
No 214
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.27 E-value=0.3 Score=32.26 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=35.1
Q ss_pred CCCCceEEEEecC-HHHHHHHHhhhhccCceEeCeEEEEEeccc
Q psy9170 3 DYDEIQAFLEMAD-ECAASTMVTYFTTCVAQLRGRAVYVQFSNH 45 (94)
Q Consensus 3 ~~~KnQAfvEm~d-~e~A~~~v~~~~~~p~~irg~~vyiqyS~~ 45 (94)
.++..-|||+|.| .++|..++.-..+....|+|..+-+.....
T Consensus 52 ~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 52 VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4555679999999 899999999888888899998877776654
No 215
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.79 E-value=0.23 Score=32.25 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=29.2
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
..|++.|.|.-.|.-+.+|-|-|..+|++||.+.-|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v 57 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 57 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 456777776646799999999999999999976554
No 216
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=89.52 E-value=0.42 Score=33.07 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.2
Q ss_pred CceEEEEecCHHHHHHHHhhhhcc
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTC 29 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~ 29 (94)
|..|||||++.++|..++......
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 578999999999999999987755
No 217
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.9 Score=28.26 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=29.1
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
..|++.|.+ .|.-+.+|-|-|..+|++||.+.-|.+
T Consensus 12 ~~p~~~l~V--~nLp~~~te~~L~~~F~~fG~v~~v~i 47 (101)
T 2cq1_A 12 GAPSRVLHI--RKLPGEVTETEVIALGLPFGKVTNILM 47 (101)
T ss_dssp SSCCSEEEE--ESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred CCCCCEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 456777765 598899999999999999998766543
No 218
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.47 E-value=0.93 Score=29.41 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=29.3
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
..|++.|.| .|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 28 ~~ps~~LfV--gNLp~~vte~dL~~lF~~fG~V~~v~i 63 (119)
T 2ad9_A 28 GVPSRVIHI--RKLPIDVTEGEVISLGLPFGKVTNLLM 63 (119)
T ss_dssp SSCCSEEEE--ESCCTTCCHHHHHHHHTTTSCCCEEEE
T ss_pred CCCCCEEEE--eCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 456788765 699999999999999999997765543
No 219
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.12 E-value=0.85 Score=29.07 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=29.1
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.+++.|. |.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus 13 ~~~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i 48 (105)
T 1sjq_A 13 GVPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLM 48 (105)
T ss_dssp CCCCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 44566655 5899999999999999999998776654
No 220
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=85.36 E-value=0.9 Score=27.77 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=25.1
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
=|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 23 fV~nLp~~~te~~L~~~F~~~G~I~~v~i 51 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSIGEVESAKL 51 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEeEe
Confidence 47899999999999999999998766544
No 221
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=85.32 E-value=1.4 Score=25.60 Aligned_cols=29 Identities=3% Similarity=-0.063 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 15 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 43 (87)
T 3s7r_A 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTI 43 (87)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 35788899999999999999998766544
No 222
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=84.97 E-value=1.4 Score=26.51 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=26.9
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i 47 (105)
T 2dnh_A 14 RDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTV 47 (105)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344443 6799999999999999999998766554
No 223
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=84.60 E-value=1.5 Score=25.81 Aligned_cols=35 Identities=6% Similarity=-0.061 Sum_probs=27.2
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++-|. |.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus 14 ~~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i 48 (95)
T 2ywk_A 14 EADRTVF--VGNLEARVREEILYELFLQAGPLTKVTI 48 (95)
T ss_dssp TGGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 3445444 5798899999999999999998766544
No 224
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.07 E-value=0.79 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCCcEEEEEEcccCCceeHhH----HHhhhcccc-ceEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQ----VHLIRSACQ-VYLIV 89 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdv----lh~i~s~~g-~~~~v 89 (94)
.|++-| +-|.|.-+.++.|. ||++|++|| .++=|
T Consensus 6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp CCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 345555 46899999999998 889999995 76643
No 225
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.87 E-value=1.5 Score=25.31 Aligned_cols=28 Identities=7% Similarity=-0.091 Sum_probs=24.3
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~i~~~~i 37 (85)
T 1x4e_A 10 IRGLQPGTTDQDLVKLCQPYGKIVSTKA 37 (85)
T ss_dssp EESCCTTCCHHHHHTTSTTTSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 5788889999999999999998776654
No 226
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.85 E-value=1.4 Score=26.25 Aligned_cols=27 Identities=4% Similarity=-0.170 Sum_probs=23.6
Q ss_pred EcccCCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 22 V~nlp~~~t~~~l~~~F~~~G~v~~v~ 48 (97)
T 1why_A 22 VGGLGPNTSLAALAREFDRFGSIRTID 48 (97)
T ss_dssp EECCCSSCCHHHHHHHHHTTSCEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 579999999999999999999876654
No 227
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=83.80 E-value=1.6 Score=27.28 Aligned_cols=29 Identities=7% Similarity=-0.140 Sum_probs=24.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 10 fV~nL~~~~te~~L~~~F~~~G~i~~v~i 38 (110)
T 3s8s_A 10 TFARLNDNVRETFLKDMCRKYGEVEEVEI 38 (110)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 46788899999999999999998766544
No 228
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.73 E-value=0.76 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.1
Q ss_pred CCCcEEEEEEcccCC-ceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILR-PATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~y-pItvdvlh~i~s~~g~~~~v~~ 91 (94)
.|++.|. |.|.-+ .+|-|-|..+|++||.+.-|.+
T Consensus 13 ~p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i 48 (102)
T 1x4d_A 13 ETRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLI 48 (102)
T ss_dssp CCCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEE
T ss_pred CCCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 4677765 579999 9999999999999998776654
No 229
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.48 E-value=1.6 Score=25.09 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=23.9
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 17 V~~l~~~~t~~~l~~~f~~~G~i~~~~~ 44 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQFGEIRTITV 44 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTTSCEEEEEE
T ss_pred EcCCCCCCCHHHHHHHHHhCCCEeEEEE
Confidence 5788899999999999999998765543
No 230
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.43 E-value=1.7 Score=26.07 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=24.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCVL 92 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~~ 92 (94)
-|.|.-+.+|-+-|..+|++||.+.-|.+.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 48 (103)
T 2d9p_A 19 YVKNLDDGIDDERLRKAFSPFGTITSAKVM 48 (103)
T ss_dssp EEECCCTTCCHHHHHHTTTTTSCEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 467998999999999999999987665443
No 231
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.12 E-value=1.7 Score=25.38 Aligned_cols=36 Identities=11% Similarity=-0.107 Sum_probs=28.1
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 12 ~~~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i 47 (95)
T 2cqc_A 12 PDPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSI 47 (95)
T ss_dssp CCGGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 34566555 4698899999999999999997765544
No 232
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=83.01 E-value=1.8 Score=25.24 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 12 ~V~nlp~~~t~~~l~~~f~~~G~v~~~~i 40 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFNECGHVLYADI 40 (92)
T ss_dssp EECSCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 46899999999999999999997765543
No 233
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=82.99 E-value=1.4 Score=27.41 Aligned_cols=29 Identities=17% Similarity=-0.085 Sum_probs=24.4
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
=|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 9 fV~nLp~~~te~~L~~~F~~~G~v~~v~i 37 (115)
T 4f25_A 9 FIKNLDKSIDNKALYDTFSAFGNILSCKV 37 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHhccCCEEEEEE
Confidence 47899999999999999999998765433
No 234
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.77 E-value=1.9 Score=25.63 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=24.1
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus 22 v~nlp~~~t~~~l~~~F~~~G~i~~v~i 49 (100)
T 2do4_A 22 ISGLPFSCTKEELEEICKAHGTVKDLRL 49 (100)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 5799999999999999999997765544
No 235
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.59 E-value=2 Score=25.75 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=24.6
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 19 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (103)
T 2cqg_A 19 IVLGLPWKTTEQDLKEYFSTFGEVLMVQV 47 (103)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEEcCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 35798899999999999999998766544
No 236
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.42 E-value=1.9 Score=25.55 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=24.4
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 9 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 37 (98)
T 2cpf_A 9 FIKNLNFSTTEETLKGVFSKVGAIKSCTI 37 (98)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 35788899999999999999997765544
No 237
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=82.28 E-value=2 Score=25.79 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=27.1
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i 55 (106)
T 1p27_B 22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHL 55 (106)
T ss_dssp TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEE
Confidence 344444 5799999999999999999998766654
No 238
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=82.20 E-value=1.5 Score=29.77 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=30.5
Q ss_pred CceEEEEecC-----HHH---HHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 6 EIQAFLEMAD-----ECA---ASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 6 KnQAfvEm~d-----~e~---A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
|.=|||||.| .++ |..++.-+.-+-..|.|+++.+++-..-.+
T Consensus 48 lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 48 LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTTHH
T ss_pred eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcccHH
Confidence 5679999997 344 555555445577899999999997665433
No 239
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.06 E-value=2.1 Score=25.07 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.0
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 13 V~nlp~~~t~~~l~~~F~~~G~i~~v~~ 40 (90)
T 2dnq_A 13 IGNLPREATEQEIRSLFEQYGKVLECDI 40 (90)
T ss_dssp EESCCSSCCHHHHHHHHHTSSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 5798899999999999999998766543
No 240
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=81.84 E-value=3 Score=25.92 Aligned_cols=37 Identities=3% Similarity=-0.078 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEcccCCc-----eeHhHHHhhhccccceEEEEEE
Q psy9170 54 HSNALLLHLTIGIILRP-----ATHYQVHLIRSACQVYLIVCVL 92 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~yp-----Itvdvlh~i~s~~g~~~~v~~~ 92 (94)
+.|+++|++. |+..| =+-|-|...|++||.+.-|-+.
T Consensus 5 ~~~s~~l~l~--Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~ 46 (105)
T 2pe8_A 5 KCPTKVVLLR--NMVGAGEVDEDLEVETKEECEKYGKVGKCVIF 46 (105)
T ss_dssp GSCCSEEEEE--SSSCSCCC---CHHHHHHHGGGGSCEEEEEEE
T ss_pred CCCCCEEEEE--cCCChHHhhHHHHHHHHHHHHhcCCEEEEEEe
Confidence 4567777654 77654 2568899999999987766543
No 241
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.74 E-value=1.9 Score=25.84 Aligned_cols=35 Identities=0% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i 47 (103)
T 2cq0_A 13 DDNATIR--VTNLSEDTRETDLQELFRPFGSISRIYL 47 (103)
T ss_dssp SSSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 3455554 5699999999999999999998766544
No 242
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.66 E-value=2.3 Score=24.90 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=23.8
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 10 v~nlp~~~t~~~l~~~f~~~G~v~~v~i 37 (95)
T 2dnz_A 10 VGSLHFNITEDMLRGIFEPFGKIDNIVL 37 (95)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence 5798899999999999999997765544
No 243
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.59 E-value=1.2 Score=26.20 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus 14 ~V~nLp~~~t~~~l~~~F~~~G~v~~v~~ 42 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFEEYGPVIECDI 42 (92)
T ss_dssp EEESCCSSCCHHHHHHHHHTTSCCCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36799999999999999999997665543
No 244
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=81.41 E-value=2.4 Score=24.33 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=24.4
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 10 ~v~nlp~~~t~~~l~~~F~~~G~i~~v~i 38 (87)
T 3bs9_A 10 FVGDLSPEITTAAIAAAFAPFGRISDARV 38 (87)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence 36798899999999999999998765544
No 245
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.37 E-value=2 Score=26.06 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=27.3
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++-|. |.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 20 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDL 54 (109)
T ss_dssp CCSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 3445444 5799899999999999999998766543
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.13 E-value=2.5 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=26.5
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.+-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i 47 (103)
T 2cq3_A 14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEI 47 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344443 5799899999999999999998766544
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.95 E-value=1.4 Score=27.26 Aligned_cols=28 Identities=7% Similarity=-0.212 Sum_probs=23.8
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-|-|..+|++||.+.-|.
T Consensus 14 ~V~nLp~~~te~~L~~~F~~~G~i~~v~ 41 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFSRFGSLGRVL 41 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 3679889999999999999999876553
No 248
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=80.84 E-value=2.2 Score=26.06 Aligned_cols=35 Identities=14% Similarity=-0.086 Sum_probs=27.7
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 6 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i 40 (115)
T 3lqv_A 6 EVNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRV 40 (115)
T ss_dssp TCCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 4455543 6798899999999999999998776644
No 249
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=80.76 E-value=2.1 Score=26.25 Aligned_cols=29 Identities=10% Similarity=-0.151 Sum_probs=24.6
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 72 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPFGNVISAKV 72 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTSCEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36799999999999999999997765543
No 250
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.51 E-value=1.7 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=26.7
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (103)
T 2cqi_A 14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKM 47 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEE
Confidence 344444 5798899999999999999998776544
No 251
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.39 E-value=2.5 Score=25.70 Aligned_cols=29 Identities=3% Similarity=-0.143 Sum_probs=24.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~~~~i 47 (108)
T 1x4c_A 19 VVSGLPPSGSWQDLKDHMREAGDVCYADV 47 (108)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEEE
Confidence 46899999999999999999998766544
No 252
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.34 E-value=2.3 Score=24.82 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=26.5
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 15 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i 48 (94)
T 2e5h_A 15 SKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTI 48 (94)
T ss_dssp CTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344443 5788899999999999999998766544
No 253
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=79.80 E-value=2.7 Score=25.02 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 41 (102)
T 2xs2_A 13 FVGGIDVRMDETEIRSFFARYGSVKEVKI 41 (102)
T ss_dssp EEECCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCeEEEEE
Confidence 36788899999999999999997765544
No 254
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=79.75 E-value=2.1 Score=24.52 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
+++.|. |.|.-+.+|-+-|..+|++||.+.-|
T Consensus 6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v 37 (85)
T 3mdf_A 6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDI 37 (85)
T ss_dssp CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEE
Confidence 444443 67888899999999999999976554
No 255
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=79.48 E-value=1.8 Score=25.78 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-
T Consensus 15 ~V~~Lp~~~te~~L~~~F~~~G~i~~v~ 42 (89)
T 3d2w_A 15 FVGRCTEDMTAEELQQFFCQYGEVVDVF 42 (89)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHhccCCEEEEE
Confidence 3589999999999999999999876554
No 256
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=79.20 E-value=1.9 Score=26.36 Aligned_cols=29 Identities=7% Similarity=-0.165 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 29 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 57 (115)
T 2cpz_A 29 FIYHLPQEFGDQDLLQMFMPFGNVVSAKV 57 (115)
T ss_dssp EEESCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36799999999999999999997655543
No 257
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.08 E-value=3 Score=25.31 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=23.8
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-|-|..+|+.||.+.-|-+
T Consensus 20 V~nlp~~~~~~~l~~~f~~~G~i~~~~i 47 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFSMAGVVVRADI 47 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 5799999999999999999997765543
No 258
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=78.94 E-value=2.4 Score=26.03 Aligned_cols=29 Identities=14% Similarity=-0.094 Sum_probs=24.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|+.||.+.-|-+
T Consensus 29 fV~nLp~~~te~~L~~~F~~~G~i~~v~i 57 (109)
T 2rs2_A 29 FIGGLSWQTTQEGLREYFGQFGEVKECLV 57 (109)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHccCCeEEEEE
Confidence 36799999999999999999998766544
No 259
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=78.92 E-value=2.8 Score=25.13 Aligned_cols=36 Identities=6% Similarity=-0.086 Sum_probs=27.7
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
..+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 26 ~~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 61 (107)
T 3ulh_A 26 VETGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAV 61 (107)
T ss_dssp CCCSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 34455554 5698899999999999999997765543
No 260
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.91 E-value=1.8 Score=25.54 Aligned_cols=27 Identities=11% Similarity=-0.128 Sum_probs=23.6
Q ss_pred EEcccCCceeHhHHHhhhccccceEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
-|.|.-+.+|-+-|..+|++||.+.-|
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~v~~~ 45 (96)
T 2e44_A 19 QIRNIPPHLQWEVLDSLLVQYGVVESC 45 (96)
T ss_dssp EEEEECSSSCHHHHHHHHHHHSCEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHhcCCeEEE
Confidence 467888999999999999999977665
No 261
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.88 E-value=1.9 Score=25.89 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=24.8
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|+.||.+.-|-+
T Consensus 20 ~V~nlp~~~t~~~l~~~F~~~G~v~~v~i 48 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFSQYGEVVDCVI 48 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36899999999999999999998766554
No 262
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.81 E-value=2.7 Score=24.93 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=26.6
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 42 (99)
T 2dgs_A 9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVM 42 (99)
T ss_dssp SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344443 5798899999999999999998766544
No 263
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.46 E-value=1.8 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=23.9
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (107)
T 2cph_A 20 VRNIPFQANQREIRELFSTFGELKTVRL 47 (107)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred EeCCCCcCCHHHHHHHHHccCCeEEEEE
Confidence 5799899999999999999998765543
No 264
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=78.37 E-value=1.7 Score=26.15 Aligned_cols=28 Identities=11% Similarity=-0.140 Sum_probs=24.0
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 16 V~nl~~~~t~~~l~~~F~~~G~i~~v~~ 43 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQFGKLERVKK 43 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 5798899999999999999998776543
No 265
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.29 E-value=2 Score=25.14 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=23.8
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 13 ~V~nlp~~~t~~~l~~~F~~~G~v~~~~ 40 (90)
T 2dnp_A 13 FVGNVSAACTSQELRSLFERRGRVIECD 40 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHcCCCEEEEE
Confidence 3679889999999999999999866543
No 266
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.19 E-value=1.2 Score=27.63 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=22.3
Q ss_pred EcccCCceeHhHHHhhhccccceE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
|.|.-+.+|-|-|..+|++||.+.
T Consensus 13 VgnLp~~~te~~L~~~F~~~G~i~ 36 (114)
T 2dnl_A 13 VGGLPPDIDEDEITASFRRFGPLV 36 (114)
T ss_dssp EECCCTTCCHHHHHHHTTTTCCCC
T ss_pred EcCCCCCCCHHHHHHHHHhcCCEE
Confidence 579999999999999999999887
No 267
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=78.17 E-value=2.4 Score=26.12 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=26.8
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-|-|..+|++||.+.-|.+
T Consensus 30 ~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i 63 (108)
T 2jvo_A 30 SNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKI 63 (108)
T ss_dssp SCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 344443 6899999999999999999997765543
No 268
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.11 E-value=1.9 Score=25.87 Aligned_cols=35 Identities=3% Similarity=-0.084 Sum_probs=26.9
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++-|. |.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (105)
T 1x5u_A 13 NQDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHM 47 (105)
T ss_dssp CTTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 3444444 4798899999999999999998765543
No 269
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=78.01 E-value=3.4 Score=25.37 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=24.3
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 30 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i 58 (108)
T 2jrs_A 30 YVGSLHFNITEDMLRGIFEPFGRIESIQL 58 (108)
T ss_dssp EEECCCSSCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36798899999999999999997765543
No 270
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.00 E-value=3.2 Score=25.21 Aligned_cols=29 Identities=3% Similarity=-0.049 Sum_probs=24.4
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-+-+
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~i 57 (114)
T 1x5o_A 29 YISNLPLSMDEQELENMLKPFGQVISTRI 57 (114)
T ss_dssp EEESCCTTCCHHHHHHTTTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 46899999999999999999997665543
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.78 E-value=2.3 Score=25.26 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=25.6
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
+++-|. |.|.-+.+|-|-|..+|++||.+.-|-
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~ 46 (99)
T 2cpj_A 14 QRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVF 46 (99)
T ss_dssp CTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEE
Confidence 344444 578888999999999999999765554
No 272
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=77.78 E-value=3.8 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=24.1
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-+-+
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~~G~i~~~~i 33 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKDFPSYLSGHV 33 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 46788889999999999999997765543
No 273
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.70 E-value=2.8 Score=25.57 Aligned_cols=29 Identities=10% Similarity=-0.187 Sum_probs=24.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|+.||.+.-|-+
T Consensus 29 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 57 (114)
T 2cq4_A 29 FCMQLAARIRPRDLEDFFSAVGKVRDVRI 57 (114)
T ss_dssp EEESCCTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEeEEEE
Confidence 36799999999999999999998766544
No 274
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.69 E-value=2.9 Score=24.77 Aligned_cols=32 Identities=9% Similarity=-0.157 Sum_probs=23.8
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.| +.+|-|-|..+|++||.+.-|.+
T Consensus 14 ~~~~l~--V~n--~~~t~~~l~~~F~~~G~i~~v~i 45 (97)
T 1x5p_A 14 KGNTLY--VYG--EDMTPTLLRGAFSPFGNIIDLSM 45 (97)
T ss_dssp CCSEEE--EEC--SSCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEE--EcC--CCCCHHHHHHHHhhCCCEEEEEe
Confidence 344444 357 49999999999999997765543
No 275
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=77.65 E-value=2.3 Score=25.73 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=26.7
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 25 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 58 (110)
T 1oo0_B 25 EGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHL 58 (110)
T ss_dssp TBEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 344444 5799999999999999999998765543
No 276
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=77.57 E-value=2.1 Score=26.62 Aligned_cols=29 Identities=3% Similarity=-0.143 Sum_probs=24.4
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 20 ~V~nLp~~~t~~~l~~~F~~~G~v~~~~i 48 (115)
T 3beg_B 20 VVSGLPPSGSWQDLKDHMREAGDVCYADV 48 (115)
T ss_dssp EEEECCSSCCTTHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36788899999999999999997766543
No 277
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=77.51 E-value=3.1 Score=26.84 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=27.5
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 37 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 71 (156)
T 1h2v_Z 37 KKSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIM 71 (156)
T ss_dssp TTCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 3455554 5698899999999999999998766554
No 278
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=77.44 E-value=2.6 Score=26.06 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|+.||.+.-|-+
T Consensus 40 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 68 (124)
T 2jwn_A 40 YVGNVDYGSTAQDLEAHFSSCGSINRITI 68 (124)
T ss_dssp EEEEECTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36788899999999999999997765544
No 279
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=77.32 E-value=2.5 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 8 ~V~nlp~~~t~~~l~~~F~~~G~i~~~~ 35 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFSTYGKIKMID 35 (88)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEE
Confidence 4678889999999999999999776543
No 280
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.99 E-value=1.6 Score=25.46 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=23.3
Q ss_pred EcccCCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|.-+.+|-|-|..+|++||.+.-|-
T Consensus 10 V~nLp~~~te~~l~~~F~~~G~i~~v~ 36 (88)
T 1wf0_A 10 VGRCTGDMTEDELREFFSQYGDVMDVF 36 (88)
T ss_dssp EESCCSSSCHHHHHHHSTTTSCCCEEE
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEE
Confidence 578889999999999999999766554
No 281
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.90 E-value=2.4 Score=25.10 Aligned_cols=28 Identities=7% Similarity=-0.069 Sum_probs=23.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 39 (99)
T 1whw_A 12 FVRNLSYTSSEEDLEKLFSAYGPLSELH 39 (99)
T ss_dssp EEECCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEeEEE
Confidence 3568889999999999999999776543
No 282
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=76.70 E-value=2.5 Score=25.09 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.9
Q ss_pred CCcEEEEEEcccCC-ceeHhHHHhhhccccceEEEE
Q psy9170 56 NALLLHLTIGIILR-PATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 56 ~n~ILL~TI~n~~y-pItvdvlh~i~s~~g~~~~v~ 90 (94)
+++-|. |.|.-+ .+|-+-|..+|++||.+.-|-
T Consensus 9 ~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~ 42 (96)
T 2kvi_A 9 PKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQIN 42 (96)
T ss_dssp CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEE
Confidence 344443 579998 999999999999999766553
No 283
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.55 E-value=1.9 Score=24.15 Aligned_cols=28 Identities=11% Similarity=-0.137 Sum_probs=23.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 4 ~v~nlp~~~t~~~l~~~F~~~G~v~~v~ 31 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFGQFGEVKECL 31 (77)
T ss_dssp EEESCCSSCCSHHHHHHHTTTSCCCCEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 4678889999999999999999765443
No 284
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=76.50 E-value=3.8 Score=24.91 Aligned_cols=29 Identities=10% Similarity=-0.073 Sum_probs=24.3
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|+.||.+.-|-+
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 47 (115)
T 2dgo_A 19 FVGDLSPEITTEDIKAAFAPFGRISDARV 47 (115)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 36799899999999999999998765543
No 285
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.42 E-value=2.5 Score=25.20 Aligned_cols=28 Identities=21% Similarity=0.006 Sum_probs=23.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-|-|..+|+.||.+.-|.
T Consensus 31 ~V~nlp~~~~~~~l~~~f~~~G~i~~~~ 58 (101)
T 2la4_A 31 YIGNIPHFATEADLIPLFQNFGFILDFK 58 (101)
T ss_dssp EEESCCTTCCHHHHHHHHHTTSCCSEEE
T ss_pred EEcCCCcccCHHHHHHHHHhCCCEEEEE
Confidence 4689999999999999999999765544
No 286
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.22 E-value=3.1 Score=24.51 Aligned_cols=27 Identities=15% Similarity=-0.122 Sum_probs=23.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
-|.|.-+.+|-|-|..+|++||.+.-|
T Consensus 12 ~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp EEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred EEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 468999999999999999999977654
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.98 E-value=2.8 Score=25.45 Aligned_cols=29 Identities=17% Similarity=-0.018 Sum_probs=24.3
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 29 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i 57 (109)
T 1x4g_A 29 YCGGIASGLTDQLMRQTFSPFGQIMEIRV 57 (109)
T ss_dssp EEECCSSCCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 34899999999999999999997765543
No 288
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.93 E-value=3.8 Score=25.20 Aligned_cols=28 Identities=14% Similarity=-0.102 Sum_probs=24.1
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|-|-|...|++||.+.-|-+
T Consensus 16 V~~Lp~~~te~~L~~~F~~~G~v~~v~i 43 (103)
T 1s79_A 16 IKGFPTDATLDDIKEWLEDKGQVLNIQM 43 (103)
T ss_dssp EECCCTTCCHHHHHHHHHTSSCEEEEEE
T ss_pred EECCCCCCCHHHHHHHHhhcCCEEEEEE
Confidence 6788899999999999999998765544
No 289
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=75.78 E-value=2.6 Score=26.55 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|+.||.+.-|.+
T Consensus 46 ~V~nLp~~~~~~~l~~~F~~~G~i~~v~i 74 (139)
T 1u6f_A 46 MVNYIPTTVDEVQLRQLFERYGPIESVKI 74 (139)
T ss_dssp EEESCSTTCCHHHHHHHHHHHSCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 35799999999999999999998766544
No 290
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=75.55 E-value=3.9 Score=24.50 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=26.1
Q ss_pred CCCcEEEEEEcccCC-ceeHhHHHhhhccccceEEE
Q psy9170 55 SNALLLHLTIGIILR-PATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 55 ~~n~ILL~TI~n~~y-pItvdvlh~i~s~~g~~~~v 89 (94)
.+++-|. |.|.-+ .+|-|-|..+|++||.+.-|
T Consensus 20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v 53 (97)
T 2xnq_A 20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQI 53 (97)
T ss_dssp CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEE
Confidence 3455444 579998 99999999999999987654
No 291
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=75.51 E-value=4.6 Score=23.17 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=23.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 10 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~i 38 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFHGCGSVNRVTI 38 (89)
T ss_dssp EEESCCTTCCHHHHHHHHGGGCCEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhCCCEEEEEE
Confidence 45788889999999999999997765543
No 292
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.43 E-value=3 Score=24.89 Aligned_cols=33 Identities=6% Similarity=-0.064 Sum_probs=26.0
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
+++-|. |.|.-+.+|-+-|..+|+.||.+.-|-
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~ 44 (103)
T 2dnm_A 12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVY 44 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEE
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 344444 679999999999999999999766553
No 293
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.30 E-value=2.6 Score=25.06 Aligned_cols=29 Identities=24% Similarity=0.078 Sum_probs=23.7
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 12 ~V~nlp~~~~~~~l~~~f~~~G~i~~~~i 40 (104)
T 1p1t_A 12 FVGNIPYEATEEQLKDIFSEVGPVVSFRL 40 (104)
T ss_dssp EEESCCTTSCHHHHHHHHHTTSCCSEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHhcCCeeEEEE
Confidence 46788899999999999999997654443
No 294
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=75.23 E-value=1.3 Score=27.79 Aligned_cols=27 Identities=0% Similarity=-0.132 Sum_probs=24.3
Q ss_pred EcccCCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|..+.+|-+-|..+|++||+++-+-
T Consensus 12 VgNL~~~~te~~L~~lF~q~G~V~~~~ 38 (89)
T 2wbr_A 12 LKNLTAQIDGPTLRTLCMQHGPLVSFH 38 (89)
T ss_dssp EECCCTTCCCHHHHHHHHHHSCEEEEE
T ss_pred EeCCCccCCHHHHHHHHHhhCCEEEEE
Confidence 799999999999999999999877543
No 295
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.22 E-value=2.5 Score=25.48 Aligned_cols=34 Identities=6% Similarity=-0.106 Sum_probs=26.3
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
.+++-|. |.|.-+.+|-|-|..+|+.||.+.-|-
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~ 46 (111)
T 1x4h_A 13 TEGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVR 46 (111)
T ss_dssp CCCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 3344443 679999999999999999999765543
No 296
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.10 E-value=3 Score=25.51 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus 31 ~V~nLp~~~te~~l~~~F~~~G~i~~v~i 59 (116)
T 1x4b_A 31 FIGGLSFETTEESLRNYYEQWGKLTDCVV 59 (116)
T ss_dssp EEECCTTCCCHHHHHHHHTSSCCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 35799899999999999999997765544
No 297
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=75.10 E-value=2.6 Score=25.55 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=22.9
Q ss_pred EEcccCCce------eHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPA------THYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypI------tvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+ |-+-|..+|++||.+.-|-
T Consensus 19 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~ 52 (105)
T 2nlw_A 19 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF 52 (105)
T ss_dssp EEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEE
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEE
Confidence 467888888 7899999999999876553
No 298
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=75.02 E-value=2.1 Score=23.98 Aligned_cols=27 Identities=11% Similarity=-0.170 Sum_probs=23.0
Q ss_pred EEcccCCceeHhHHHhhhccccceEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
-|.|.-+.+|-+-|..+|++||.+.-|
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G~i~~v 29 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFGKVDDA 29 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCCSEE
T ss_pred EEecCCCCCCHHHHHHHHHhcCCEEEE
Confidence 467888899999999999999976544
No 299
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=74.85 E-value=3.6 Score=24.38 Aligned_cols=32 Identities=9% Similarity=-0.143 Sum_probs=25.6
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLI 88 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~ 88 (94)
.+.+.| -|.|.-+.+|-|-|..+|++||.+.-
T Consensus 11 ~~~~~l--~V~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 11 SDNNTI--FVQGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp CCCSEE--EEECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred CCCCEE--EEeCCCCCCCHHHHHHHHHHhCCEee
Confidence 334444 46899999999999999999997664
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.58 E-value=1.8 Score=27.71 Aligned_cols=36 Identities=6% Similarity=-0.000 Sum_probs=29.1
Q ss_pred CCCCcEEEEEEcccCCc-eeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRP-ATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~yp-Itvdvlh~i~s~~g~~~~v~~ 91 (94)
..|++.|. |.|.-+. +|-+-|..+|++||.+.-|.+
T Consensus 22 ~~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i 58 (112)
T 1x4f_A 22 QELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYIL 58 (112)
T ss_dssp SCCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEE
T ss_pred CCCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEE
Confidence 45677776 4699997 999999999999997766554
No 301
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=74.34 E-value=3.1 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=23.2
Q ss_pred EcccCCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|.-+.+|-+-|..+|+.||.+.-|-
T Consensus 7 V~nLp~~~t~~~l~~~F~~~G~i~~v~ 33 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCSNVGPVINLK 33 (96)
T ss_dssp EESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 568889999999999999999766543
No 302
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.07 E-value=1.9 Score=25.73 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=23.1
Q ss_pred EcccCCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 17 V~nLp~~~t~~~l~~~f~~~G~i~~v~ 43 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIPFGDITDIQ 43 (102)
T ss_dssp EESCCSSCCHHHHHHHHTTTSCCCCEE
T ss_pred EeCCCCCCCHHHHHHHhhccCCEEEEE
Confidence 579999999999999999999765443
No 303
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=73.92 E-value=3 Score=25.96 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=24.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|++||.+.-|.+
T Consensus 11 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 39 (116)
T 2fy1_A 11 FIGGLNRETNEKMLKAVFGKHGPISEVLL 39 (116)
T ss_dssp EEECCTTTCCHHHHHHHHHTSSCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36799999999999999999997655543
No 304
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.89 E-value=2.9 Score=24.68 Aligned_cols=25 Identities=4% Similarity=-0.157 Sum_probs=22.3
Q ss_pred EEcccCCceeHhHHHhhhccccceE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
-|.|.-+.+|-|-|..+|++||.+.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~G~i~ 37 (99)
T 2div_A 13 WMGDLEPYMDENFISRAFATMGETV 37 (99)
T ss_dssp EECSCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 4689999999999999999999765
No 305
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.75 E-value=3.5 Score=25.18 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=26.3
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i 49 (116)
T 2cqd_A 16 TFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVV 49 (116)
T ss_dssp SSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEE
Confidence 344443 5798899999999999999998765543
No 306
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=73.69 E-value=3.8 Score=26.12 Aligned_cols=36 Identities=11% Similarity=-0.107 Sum_probs=28.0
Q ss_pred CCCCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+.+++.|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 43 ~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i 78 (129)
T 2kxn_B 43 PDPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSI 78 (129)
T ss_dssp CCCSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 34455544 5799999999999999999998766544
No 307
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.55 E-value=2 Score=25.64 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=25.2
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLI 88 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~ 88 (94)
+++-|. |.|.-+.+|-|-|..+|++||.+.+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~ 44 (101)
T 2fc9_A 14 ESKTLV--LSNLSYSATEETLQEVFEKATFIKV 44 (101)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHCSSCSEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCEEEE
Confidence 455554 5698899999999999999998754
No 308
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=73.40 E-value=3 Score=23.86 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=21.5
Q ss_pred EEcccCCce------eHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPA------THYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypI------tvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+ |-+-|..+|++||.+.-|-
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~ 38 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDF 38 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 366776666 6799999999999876543
No 309
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.13 E-value=3 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=27.3
Q ss_pred CCCcEEEEEEcccCCc-eeHhHHHhhhccccceEEEEE
Q psy9170 55 SNALLLHLTIGIILRP-ATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 55 ~~n~ILL~TI~n~~yp-Itvdvlh~i~s~~g~~~~v~~ 91 (94)
.++.||.| .|..+. +|-+-|...|++||.++-|-+
T Consensus 16 ~~G~il~v--~~l~~~~~sredLke~F~~~G~V~~Vd~ 51 (121)
T 1owx_A 16 KIGCLLKF--SGDLDDQTCREDLHILFSNHGEIKWIDF 51 (121)
T ss_dssp CCCCEEEE--EESCCSSCCHHHHHHHTCSSCCEEEEEC
T ss_pred cCCeEEEE--ecCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 34666654 577775 999999999999998877654
No 310
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=73.07 E-value=2.4 Score=25.27 Aligned_cols=29 Identities=14% Similarity=-0.037 Sum_probs=24.1
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-+
T Consensus 4 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 32 (101)
T 2hvz_A 4 YVGNLGTGAGKGELERAFSYYGPLRTVWI 32 (101)
T ss_dssp EEECCCSSCSHHHHHHHHHHHCCCSEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 46788889999999999999997665543
No 311
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=72.86 E-value=2 Score=25.33 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=26.0
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
+++-|. |.|.-+.+|-+-|..+|+.||.++++
T Consensus 15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 344444 67999999999999999999987665
No 312
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=72.82 E-value=3.3 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=22.8
Q ss_pred EcccCCc-eeHhHHHhhhccccceEEE
Q psy9170 64 IGIILRP-ATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 64 I~n~~yp-Itvdvlh~i~s~~g~~~~v 89 (94)
|.|.-+. +|-|-|..+|++||.+.-|
T Consensus 32 V~nl~~~~~t~~~l~~~F~~~G~v~~v 58 (110)
T 1wf1_A 32 IGNLNTALVKKSDVETIFSKYGRVAGC 58 (110)
T ss_dssp ECSCCCSSCCHHHHHHHHGGGSCCSEE
T ss_pred EeCCCcccCCHHHHHHHHHhCCCeEEE
Confidence 6899998 9999999999999976554
No 313
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=72.77 E-value=3.3 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=26.5
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
.+++.|. |.|.-+.+|-+-|..+|+.||.+.-|-
T Consensus 20 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~ 53 (126)
T 3ex7_B 20 VEGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIH 53 (126)
T ss_dssp SSSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 3455544 678889999999999999999776543
No 314
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=72.18 E-value=1.7 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.053 Sum_probs=23.8
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-|-|..+|++||.+.-|-
T Consensus 17 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 44 (106)
T 2dgp_A 17 FIGQIPRNLDEKDLKPLFEEFGKIYELT 44 (106)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCCCEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 4679999999999999999999765554
No 315
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=71.95 E-value=2.3 Score=25.68 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=23.2
Q ss_pred EEcccCC------ceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILR------PATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~y------pItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+ .+|-+-|..+|++||.+.-|-
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~ 43 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME 43 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE
Confidence 4678778 999999999999999776543
No 316
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=70.83 E-value=4.3 Score=23.75 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=26.0
Q ss_pred CCCcEEEEEEcccCCceeHhHHH----hhhccccceEEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVH----LIRSACQVYLIVC 90 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh----~i~s~~g~~~~v~ 90 (94)
.|++-|. |.|.-+.+|-+-|. .+|++||.+.-|.
T Consensus 6 ~~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~ 43 (97)
T 1nu4_A 6 RPNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDIL 43 (97)
T ss_dssp CCCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 3445444 57988999999888 9999999776553
No 317
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=70.57 E-value=4 Score=25.27 Aligned_cols=34 Identities=6% Similarity=-0.037 Sum_probs=26.3
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-| -|.|.-+.+|-|-|..+|+.||.+.-|-+
T Consensus 34 ~~~~l--~V~nlp~~~t~~~l~~~F~~~G~v~~v~i 67 (124)
T 2kt5_A 34 TGAKL--LVSNLDFGVSDADIQELFAEFGTLKKAAV 67 (124)
T ss_dssp SCEEE--EEESCCSSCCHHHHHHHHHTTSCCSEEEE
T ss_pred CCCEE--EEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 34443 46799999999999999999997655543
No 318
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.45 E-value=2.6 Score=25.07 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=26.1
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 11 ~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i 44 (102)
T 1x5s_A 11 DEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVV 44 (102)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344444 5798899999999999999997655443
No 319
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=70.09 E-value=2.3 Score=23.73 Aligned_cols=27 Identities=4% Similarity=-0.076 Sum_probs=22.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
-|.|.-+.+|-|-|..+|++||.+.-|
T Consensus 3 ~v~nLp~~~t~~~l~~~F~~~G~i~~v 29 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFGGFGEVESI 29 (75)
T ss_dssp EESCCCSSCCHHHHHHHHHHHSCCSEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 367888899999999999999976544
No 320
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.74 E-value=5.6 Score=23.59 Aligned_cols=28 Identities=7% Similarity=-0.200 Sum_probs=23.8
Q ss_pred EcccCCceeHhHHHhhhcc-ccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSA-CQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~-~g~~~~v~~ 91 (94)
|.|.-+.+|-+-|..+|++ ||.+.-|-+
T Consensus 14 V~nLp~~~t~~~l~~~F~~~~G~v~~v~i 42 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVKVYPSCRGGKV 42 (104)
T ss_dssp EECCCTTCCHHHHHHHHHHHCTTEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHhCCCeEEEEE
Confidence 6799999999999999999 997665543
No 321
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.51 E-value=5.5 Score=24.01 Aligned_cols=26 Identities=4% Similarity=-0.106 Sum_probs=23.2
Q ss_pred EEcccCCceeHhHHHhhhccccceEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLI 88 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~ 88 (94)
-|.|.-|.+|-+-|...|++||.+.-
T Consensus 19 ~V~nLp~~~te~~l~~~F~~~G~v~~ 44 (104)
T 1wg5_A 19 RLRGLPFGCSKEEIVQFFSGLEIVPN 44 (104)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcce
Confidence 36899999999999999999998764
No 322
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.37 E-value=3.4 Score=25.25 Aligned_cols=28 Identities=11% Similarity=-0.111 Sum_probs=23.5
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 33 ~V~nLp~~~te~~l~~~F~~~G~i~~v~ 60 (109)
T 2err_A 33 HVSNIPFRFRDPDLRQMFGQFGKILDVE 60 (109)
T ss_dssp EEESCCTTCCHHHHHHHGGGTCCCSCEE
T ss_pred EEECCCCcCCHHHHHHHHHhcCCEEEEE
Confidence 3689999999999999999999765443
No 323
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.91 E-value=2.5 Score=25.06 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=22.3
Q ss_pred EEcccCCceeHhHHHhhhccccceE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
-|.|.-+.+|-+-|..+|+.||.+.
T Consensus 23 ~V~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 23 YVGNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCC
T ss_pred EEeCCCCcCcHHHHHHHHHhcCCEE
Confidence 3679999999999999999999764
No 324
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.88 E-value=5.7 Score=24.11 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=21.4
Q ss_pred EcccCCceeHhHHHhhhccccce
Q psy9170 64 IGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~ 86 (94)
|.|.-|.+|-|-|...|++||++
T Consensus 20 V~nLp~~~te~~l~~~F~~~G~~ 42 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSPLNPM 42 (102)
T ss_dssp EESCCTTCCHHHHHHSSCSCCCS
T ss_pred EeCCCCCCCHHHHHHHHHHcCce
Confidence 57999999999999999999965
No 325
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=68.85 E-value=4.8 Score=25.04 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=26.9
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
+++-|. |.|.-+.+|-+-|..+|++||.+.-|-+
T Consensus 62 ~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i 95 (140)
T 2ku7_A 62 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQI 95 (140)
T ss_dssp SCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEC
T ss_pred CCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 455544 5799899999999999999998766543
No 326
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=68.76 E-value=3.1 Score=26.30 Aligned_cols=30 Identities=10% Similarity=-0.201 Sum_probs=22.7
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
+++-|.+ .| +++|-|-|..+|++||.+.-|
T Consensus 38 ~~~~lfV--gn--l~~te~~L~~~F~~~G~I~~v 67 (121)
T 2bz2_A 38 KGNTLYV--YG--EDMTPTLLRGAFSPFGNIIDL 67 (121)
T ss_dssp CCCEEEE--EC--SSCCHHHHHHHHSTTCCCSCE
T ss_pred CCCEEEE--cC--CCCCHHHHHHHHHccCCEEEE
Confidence 4454443 57 589999999999999976544
No 327
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=68.54 E-value=2.6 Score=25.73 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=20.9
Q ss_pred EEcccCCceeHhHHHhhhccccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
=|.|.-+.+|-|-|..+|++||.
T Consensus 13 fV~nL~~~~tee~L~~~F~~~G~ 35 (95)
T 2lkz_A 13 ILRNIAPHTVVDSIMTALSPYAS 35 (95)
T ss_dssp EEESCCTTCCHHHHHHHSTTTCC
T ss_pred EEeCCCCcCCHHHHHHHHHhhCC
Confidence 36899999999999999999995
No 328
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.55 E-value=4.5 Score=24.70 Aligned_cols=29 Identities=7% Similarity=-0.159 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHH---hhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVH---LIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh---~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-|-|. .+|++||.+.-|.+
T Consensus 19 ~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i 50 (111)
T 2cpi_A 19 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI 50 (111)
T ss_dssp EEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhhccCCEEEEEE
Confidence 468888999999999 99999998776654
No 329
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.50 E-value=4.4 Score=24.04 Aligned_cols=29 Identities=7% Similarity=-0.130 Sum_probs=24.5
Q ss_pred EEcccCCceeHhHHH----hhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVH----LIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh----~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|. .+|++||.+.-|-+
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i 45 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL 45 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHhccccCcEEEEEE
Confidence 468999999999999 99999997765544
No 330
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.19 E-value=3.8 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.009 Sum_probs=21.8
Q ss_pred EcccCCceeHhHHHhhhccccceEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLI 88 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~ 88 (94)
|.|.-+.+|-+-|..+|++||.+.-
T Consensus 10 V~nLp~~~t~~~l~~~F~~~G~i~~ 34 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFSAFGVILQ 34 (96)
T ss_dssp EECCCTTCCHHHHHHHHHTTSCBSS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 5688899999999999999997643
No 331
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.96 E-value=3.7 Score=24.89 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=22.3
Q ss_pred EEcccCCceeHhHHHhhhccccceE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
-|.|.-+.+|-+-|..+|++||.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 19 YVQGLNDSVTLDDLADFFKQCGVVK 43 (113)
T ss_dssp EEECCCTTCCHHHHHHHHTTTSCBC
T ss_pred EEcCCCCCCCHHHHHHHHHhcCCEe
Confidence 3679889999999999999999776
No 332
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=66.66 E-value=3.6 Score=24.10 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=20.1
Q ss_pred EEcccCCceeHhHHHhhhcccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g 84 (94)
-|.|.-+.+|-|-|..+|++||
T Consensus 5 ~V~nL~~~~t~~~l~~~F~~~G 26 (90)
T 3p5t_L 5 YIGNLTWWTTDEDLTEAVHSLG 26 (90)
T ss_dssp EEESCCTTCCHHHHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHHHhC
Confidence 4678889999999999999999
No 333
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=65.62 E-value=4.2 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.4
Q ss_pred EEEcccCCceeHhHHHhhhccccc
Q psy9170 62 LTIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 62 ~TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
+=|.|.-+.+|-|-|..+|+.||.
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~G~ 81 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSIGV 81 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCC
Confidence 357899999999999999999993
No 334
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.46 E-value=2.3 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=20.7
Q ss_pred EcccCCceeHhHHHhhhccccc
Q psy9170 64 IGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~ 85 (94)
|.|.-+.+|-|-|..+|++||.
T Consensus 13 V~nLp~~~t~~~l~~~F~~~G~ 34 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDRKL 34 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHTTC
T ss_pred EeCCCCCCCHHHHHHHHHHcCC
Confidence 6799999999999999999997
No 335
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.86 E-value=8.5 Score=22.67 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=25.3
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccc--cceEEE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSAC--QVYLIV 89 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~--g~~~~v 89 (94)
.+++.|. |.|.-+.+|-+-|..+|++| |.+.-|
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 13 SSVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp SCCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEE
T ss_pred CCcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEE
Confidence 3444444 57999999999999999999 765544
No 336
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.59 E-value=6.4 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=20.4
Q ss_pred EEcccCCceeHhHHHhhhcccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQ 84 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g 84 (94)
-|.|.-+.+|-+-|..+|+.||
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G 40 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFRGLN 40 (104)
T ss_dssp EEESCCSSCCHHHHHHHTTTSC
T ss_pred EEeCCCCcCCHHHHHHHHHHCC
Confidence 4679999999999999999999
No 337
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.33 E-value=9.8 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=22.8
Q ss_pred CceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEE
Q psy9170 6 EIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQ 41 (94)
Q Consensus 6 KnQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiq 41 (94)
-.=|+|||+|+.+|-.+-=... -..+.||++.+-
T Consensus 62 H~GAivef~d~~~AgKasLaL~--G~ef~gr~Lr~g 95 (117)
T 2l9w_A 62 FNGAIIIFRDSKFAAKMLMILN--GSQFQGKVIRSG 95 (117)
T ss_dssp TTEEEEECSCHHHHHHHHHHHS--SEEETTEEEEEE
T ss_pred CCceEEEEccchhhHHHHhhcC--CeeecCeEEEec
Confidence 3458999999999866543333 235668877653
No 338
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.06 E-value=9.6 Score=22.58 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=24.1
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccceE
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
.+.+-|. |.|.-+.+|-|-|..+|++||+..
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~gi~~ 43 (103)
T 2dng_A 13 EPPYTAY--VGNLPFNTVQGDIDAIFKDLSIRS 43 (103)
T ss_dssp SSCEEEE--EESCCTTCCHHHHHHHTTTSCEEE
T ss_pred CCCeEEE--EeCCCCCCCHHHHHHHHHhCCceE
Confidence 3444443 679999999999999999998443
No 339
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=63.72 E-value=9.3 Score=25.95 Aligned_cols=28 Identities=14% Similarity=-0.102 Sum_probs=23.9
Q ss_pred EcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
|.|.-+.+|.+-|..+|++||.+.-|-+
T Consensus 114 V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 114 IKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp EECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred ecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 5888889999999999999998765543
No 340
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=63.08 E-value=6.8 Score=29.76 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEEcccCCceeHhHHHhhhccccceEEE
Q psy9170 53 THSNALLLHLTIGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 53 s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
+.+|++.|-|-=.+..|-+|-|-|..+|++||.+.-|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v 50 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 50 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 3566776654323368999999999999999977654
No 341
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.88 E-value=5.9 Score=24.53 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=18.5
Q ss_pred ceeHhHHHhhhccccceEEEEE
Q psy9170 70 PATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 70 pItvdvlh~i~s~~g~~~~v~~ 91 (94)
.+|-|-|..+|++||.+.-|-+
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i 49 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVL 49 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEE
Confidence 4899999999999998766554
No 342
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=62.82 E-value=2.7 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=23.3
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
-|.|.-+.+|-+-|..+|++||.+.-|-
T Consensus 5 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~ 32 (90)
T 2ki2_A 5 YVGNLVYSATSEQVKELFSQFGKVFNVK 32 (90)
T ss_dssp EEEEECTTSSHHHHTTTHHHHTCCSEEE
T ss_pred EECCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 4678888899999999999999765543
No 343
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=62.05 E-value=5.2 Score=25.72 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=24.8
Q ss_pred CCCCcEEEEEEcccCCceeHhH----HHhhhccccceEEE
Q psy9170 54 HSNALLLHLTIGIILRPATHYQ----VHLIRSACQVYLIV 89 (94)
Q Consensus 54 ~~~n~ILL~TI~n~~ypItvdv----lh~i~s~~g~~~~v 89 (94)
..|++.|. |.|.-+.+|-|- |+.+|++||.+.-|
T Consensus 26 ~~p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v 63 (127)
T 2a3j_A 26 TEPSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDI 63 (127)
T ss_dssp CSCCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEE
Confidence 34566655 568888888875 67899999977554
No 344
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=61.44 E-value=5.1 Score=25.63 Aligned_cols=73 Identities=7% Similarity=-0.024 Sum_probs=26.8
Q ss_pred eEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceeeeccCCCCCCcEEEEEEcccCCceeHhHHHhhhccccceE
Q psy9170 8 QAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLHLTIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 8 QAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL~~~~s~~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
.+|.|.+|+..|..+++........-+|. ..++. .+....+++-| -|.|.-+.+|-+-|..+|++||.+.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~~~-----~~~~~~~~~~l--~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSYGR-----PPPDVEGMTSL--KVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp --------------------------------CCSCC-----SCSSGGGCCCE--EEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC---CCcCC-----CCCCCCCCCEE--EEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 57888888888877777666443211111 00111 01112223333 3679999999999999999999765
Q ss_pred EEE
Q psy9170 88 IVC 90 (94)
Q Consensus 88 ~v~ 90 (94)
-|-
T Consensus 76 ~v~ 78 (135)
T 2lea_A 76 DVY 78 (135)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 345
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=61.23 E-value=6.5 Score=30.37 Aligned_cols=29 Identities=3% Similarity=-0.121 Sum_probs=24.6
Q ss_pred EEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
-|.|.-+.+|-+-|..+|+.||.+.-|-+
T Consensus 106 fV~nL~~~~te~~L~~~F~~~G~I~~v~i 134 (437)
T 3pgw_S 106 FVARVNYDTTESKLRREFEVYGPIKRIHM 134 (437)
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCeeEEEe
Confidence 46799999999999999999997765544
No 346
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=60.72 E-value=3.1 Score=24.31 Aligned_cols=25 Identities=8% Similarity=-0.117 Sum_probs=22.1
Q ss_pred EEcccCCceeHhHHHhhhccccceE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
-|.|.-+.+|-+-|..+|++||.+.
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~~G~i~ 43 (95)
T 2ek1_A 19 KVQNMPFTVSIDEILDFFYGYQVIP 43 (95)
T ss_dssp EEECCCTTCCHHHHHHHTTTSCBCT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 4679999999999999999999754
No 347
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.17 E-value=4.5 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=22.0
Q ss_pred EEcccCCceeHhHHHhhhccccce
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
-|.|.-+.+|-+-|..+|++||.+
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~g~v 42 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEGIPVD 42 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTTSCCC
T ss_pred EEeCcCCcCCHHHHHHHHHhCCCc
Confidence 468999999999999999999976
No 348
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.74 E-value=6.9 Score=22.90 Aligned_cols=25 Identities=8% Similarity=-0.117 Sum_probs=22.0
Q ss_pred EEcccCCceeHhHHHhhhccccceE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYL 87 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~ 87 (94)
-|.|.-+.+|-+-|..+|++||.+.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~G~v~ 43 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFYGYQVIP 43 (98)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCCCT
T ss_pred EEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 3679999999999999999999764
No 349
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.91 E-value=6.9 Score=24.25 Aligned_cols=24 Identities=8% Similarity=-0.125 Sum_probs=22.0
Q ss_pred EEcccCCceeHhHHHhhhccccce
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
-|.|.-|.+|-+-|..+|++||.+
T Consensus 29 ~V~nLp~~~te~~l~~~F~~~G~v 52 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFKKLDIV 52 (124)
T ss_dssp EEECCCTTCCHHHHHHHSCSSCBC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCc
Confidence 468999999999999999999975
No 350
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=56.76 E-value=8.3 Score=22.94 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=21.7
Q ss_pred EcccCCceeHhHHHhhhccccceEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
|.|.-+.+|-|-|..+|+.|| +.-|
T Consensus 24 V~nLp~~~t~~~l~~~F~~~G-i~~v 48 (100)
T 2j76_E 24 LGNLPYDVTEESIKEFFRGLN-ISAV 48 (100)
T ss_dssp ESCCSSCCSSSHHHHHSCSSC-EEEE
T ss_pred EeCCCCCCCHHHHHHHHHhcC-CeEE
Confidence 689999999999999999999 4433
No 351
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.82 E-value=7 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.014 Sum_probs=22.9
Q ss_pred EcccCCceeHhHHHhhhccccc-eEEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQV-YLIVC 90 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~-~~~v~ 90 (94)
|.|.-+.+|-|-|..+|+.||. +.-|-
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G~~v~~v~ 40 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVTEGVLDVI 40 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHSTTEEEEE
T ss_pred EeCCCCcCCHHHHHHHHHHhcCCceEEE
Confidence 6798899999999999999987 55543
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=55.16 E-value=5.8 Score=25.12 Aligned_cols=30 Identities=3% Similarity=0.015 Sum_probs=24.0
Q ss_pred CCCcEEEEEEcccCCceeHhHHHhhhccccce
Q psy9170 55 SNALLLHLTIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
.+++-| -|.|.-+.+|-|-|..+|++||.+
T Consensus 43 ~~~~~l--~V~nLp~~~te~~L~~~F~~~G~i 72 (143)
T 3egn_A 43 EPNCRI--YVKNLAKHVQEKDLKYIFGRYVDF 72 (143)
T ss_dssp SCCSEE--EEEEECTTCCHHHHHHHHGGGCCT
T ss_pred CCCCEE--EEeCCCCCCCHHHHHHHHHHhCCc
Confidence 345544 467888999999999999999954
No 353
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=53.60 E-value=15 Score=25.56 Aligned_cols=29 Identities=17% Similarity=-0.011 Sum_probs=24.1
Q ss_pred EEEcccCCceeHhHHHhhhcccc--ceEEEE
Q psy9170 62 LTIGIILRPATHYQVHLIRSACQ--VYLIVC 90 (94)
Q Consensus 62 ~TI~n~~ypItvdvlh~i~s~~g--~~~~v~ 90 (94)
+=|.|.-+.+|-|-|..+|+.|| .+.-|-
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~ 101 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIK 101 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEE
Confidence 46789999999999999999999 444443
No 354
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=53.25 E-value=9.1 Score=25.68 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=26.4
Q ss_pred CCcEEEEEEcccCCceeHhHHHhhhccccceEEEEE
Q psy9170 56 NALLLHLTIGIILRPATHYQVHLIRSACQVYLIVCV 91 (94)
Q Consensus 56 ~n~ILL~TI~n~~ypItvdvlh~i~s~~g~~~~v~~ 91 (94)
++.-|. |.|.-+.+|-+-|..+|+.||.+.-|.+
T Consensus 87 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i 120 (177)
T 2f3j_A 87 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAV 120 (177)
T ss_dssp TCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 344443 6799999999999999999997765543
No 355
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.19 E-value=16 Score=21.42 Aligned_cols=26 Identities=12% Similarity=-0.075 Sum_probs=22.4
Q ss_pred EcccCCceeHhHHHhhhccccceEEE
Q psy9170 64 IGIILRPATHYQVHLIRSACQVYLIV 89 (94)
Q Consensus 64 I~n~~ypItvdvlh~i~s~~g~~~~v 89 (94)
|.|.-+.+|-+-|..+|+.|+.++++
T Consensus 20 V~nLp~~~t~~~l~~~F~~~~~~~~~ 45 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFDGSVRARIV 45 (102)
T ss_dssp EECCCTTCCHHHHHHTSTTCSEEEEE
T ss_pred EeCCCCccCHHHHHHHhcCCeEEEEE
Confidence 57999999999999999999866554
No 356
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=53.10 E-value=9.1 Score=24.99 Aligned_cols=24 Identities=13% Similarity=-0.079 Sum_probs=21.7
Q ss_pred EEcccCCceeHhHHHhhhccccce
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
-|.|.-|.+|-|-|...|++||++
T Consensus 50 fV~nLp~~~te~dL~~~F~~~Gi~ 73 (139)
T 2hgn_A 50 HMRGLPYKATENDIYNFFSPLNPV 73 (139)
T ss_dssp ECCSCCTTCCHHHHHHHHCSCCCS
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCe
Confidence 368999999999999999999954
No 357
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.56 E-value=9 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=21.2
Q ss_pred EEcccCCceeHhHHHhhhccccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
-|.|.-|.+|-|-|...|++||.
T Consensus 21 ~V~nLp~~~te~~l~~~F~~~G~ 43 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLSDCTI 43 (118)
T ss_dssp EEESCCTTCCHHHHHHHTTTSCB
T ss_pred EEeCCCCCCCHHHHHHHHHHcCC
Confidence 45799999999999999999997
No 358
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=51.06 E-value=8.5 Score=24.13 Aligned_cols=29 Identities=3% Similarity=-0.022 Sum_probs=24.3
Q ss_pred EEEEcccCCceeHhHHHhhhcccc-ceEEE
Q psy9170 61 HLTIGIILRPATHYQVHLIRSACQ-VYLIV 89 (94)
Q Consensus 61 L~TI~n~~ypItvdvlh~i~s~~g-~~~~v 89 (94)
-+-|.|.-+.+|-+-|..+|++|| .+.-+
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v 59 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFS 59 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEE
Confidence 446789999999999999999999 55443
No 359
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=50.26 E-value=9.1 Score=23.98 Aligned_cols=26 Identities=8% Similarity=-0.127 Sum_probs=22.9
Q ss_pred EEcccCCceeHhHHHhhhccccceEE
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVYLI 88 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~~~ 88 (94)
=|.|.-+.+|-|-|..+|++||.+..
T Consensus 27 fV~nL~~~~te~~L~~~F~~~G~v~~ 52 (131)
T 2m2b_A 27 ILRNLNPHSTMDSILGALAPYAVLSS 52 (131)
T ss_dssp EECSCCTTCCSHHHHHHHGGGCCCCT
T ss_pred EEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 47899999999999999999997643
No 360
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=49.21 E-value=11 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred EEcccCCceeHhHHHhhhccccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
-|.|.-|.+|-+-|...|+.||.
T Consensus 15 ~V~nLp~~~te~~l~~~F~~~g~ 37 (107)
T 2lmi_A 15 RAQGLPWSCTMEDVLNFFSDCRI 37 (107)
T ss_dssp EEECCCSSCCSHHHHHHTTTSCB
T ss_pred EEeCCCCCCCHHHHHHHHHhcCC
Confidence 46899999999999999999997
No 361
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=47.37 E-value=5.2 Score=31.80 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCCCCceEEEEecCHHHHHHHHhhh
Q psy9170 1 MYDYDEIQAFLEMADECAASTMVTYF 26 (94)
Q Consensus 1 ~~~~~KnQAfvEm~d~e~A~~~v~~~ 26 (94)
||..++..|+|||++.+++.++.+..
T Consensus 84 ~~~~~g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 84 FYESFGLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp EECSSSEEEEEECC---CCHHHHSSC
T ss_pred EEccCCeEEEEEeCCHHHHHHHHhcc
Confidence 46667789999999999999887663
No 362
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=44.86 E-value=12 Score=24.21 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=21.5
Q ss_pred EEcccCCceeHhHHHhhhccccc
Q psy9170 63 TIGIILRPATHYQVHLIRSACQV 85 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~ 85 (94)
-|.|.-|.+|-|-|...|++||.
T Consensus 48 fVgnLp~~~te~dL~~~F~~~G~ 70 (136)
T 2hgl_A 48 KLRGLPWSCSVEDVQNFLSDCTI 70 (136)
T ss_dssp EEESCCTTCCHHHHHHHTTTCCC
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC
Confidence 46899999999999999999997
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=42.95 E-value=18 Score=25.97 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=26.5
Q ss_pred CCCcEEEEEEcccCCce---------eHhHHHhhhccccceEEEEEE
Q psy9170 55 SNALLLHLTIGIILRPA---------THYQVHLIRSACQVYLIVCVL 92 (94)
Q Consensus 55 ~~n~ILL~TI~n~~ypI---------tvdvlh~i~s~~g~~~~v~~~ 92 (94)
.+++-|-| .|.-..+ |-+.|...|++||.+.-|-++
T Consensus 132 ~~~rtLfV--gnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYV--GGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV 176 (240)
T ss_dssp CCCCEEEE--ECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred cCCceeec--CCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE
Confidence 34555554 6777766 789999999999987766543
No 364
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.94 E-value=16 Score=23.21 Aligned_cols=24 Identities=13% Similarity=-0.146 Sum_probs=21.6
Q ss_pred EEcccCCceeHhHHHhhhccccce
Q psy9170 63 TIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 63 TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
-|.|.-|.+|-|-|...|++||.+
T Consensus 27 ~V~nLp~~~te~dl~~~F~~~g~v 50 (123)
T 2dha_A 27 RMRGLPFTATAEEVVAFFGQHCPI 50 (123)
T ss_dssp EECSCCTTCCHHHHHHHHHTTSCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCc
Confidence 478999999999999999999963
No 365
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=35.76 E-value=30 Score=23.28 Aligned_cols=27 Identities=0% Similarity=-0.273 Sum_probs=22.2
Q ss_pred Eccc----CCceeHhHHHhhhccccceEEEE
Q psy9170 64 IGII----LRPATHYQVHLIRSACQVYLIVC 90 (94)
Q Consensus 64 I~n~----~ypItvdvlh~i~s~~g~~~~v~ 90 (94)
|.|. -|.+|-+-|-..|+.||.+.-+-
T Consensus 7 VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~ 37 (136)
T 2j8a_A 7 VYPAQDSTTTNIQDISIKNYFKKYGEISHFE 37 (136)
T ss_dssp EEESSSSCCCCCCHHHHHHHHHTTSCCSEEE
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 5666 78899999999999999765443
No 366
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=35.35 E-value=39 Score=21.58 Aligned_cols=25 Identities=8% Similarity=-0.006 Sum_probs=22.2
Q ss_pred EEEcccCCceeHhHHHhhhccccce
Q psy9170 62 LTIGIILRPATHYQVHLIRSACQVY 86 (94)
Q Consensus 62 ~TI~n~~ypItvdvlh~i~s~~g~~ 86 (94)
+-|.|.-|.+|-|-|...|++||+.
T Consensus 45 lfVgnLp~~~te~dL~~~F~~~~i~ 69 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFSGLEIV 69 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTTTSCEE
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCce
Confidence 3478999999999999999999765
No 367
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.96 E-value=36 Score=21.86 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=17.1
Q ss_pred ceEEEEecCHHHHHHHHhh
Q psy9170 7 IQAFLEMADECAASTMVTY 25 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~ 25 (94)
+.|+|+|.|.+.|.++..-
T Consensus 48 ~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC
T ss_pred CcEEEEEcChHHHHHHhcC
Confidence 8999999999999988764
No 368
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=27.49 E-value=48 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.1
Q ss_pred ceEEEEecCHHHHHHHHhh
Q psy9170 7 IQAFLEMADECAASTMVTY 25 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~ 25 (94)
+-.++||.|.++|.++.+.
T Consensus 54 ~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 54 AQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp EEEEEEESSHHHHHHHHHS
T ss_pred eEEEEECCCHHHHHHHHCC
Confidence 4579999999999988764
No 369
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.36 E-value=1.3e+02 Score=19.06 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=31.5
Q ss_pred ceEEEEecCHHHHHHHHhhhhccCceEeCeEEEEEeccceee
Q psy9170 7 IQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKEL 48 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~~~~~p~~irg~~vyiqyS~~~eL 48 (94)
+-..+-|.+.|+|.++..-.... .+.|+++.+.|-.+..+
T Consensus 47 RRirv~F~~~~~A~~AR~~Lh~~--~f~g~~~r~YFgq~~~~ 86 (104)
T 1wey_A 47 KRVRINFSNPLSAADARLRLHKT--EFLGKEMKLYFAQTLHI 86 (104)
T ss_dssp TEEEEECSSTTHHHHHHHTSTTS--EETTEECEEECCCCSSC
T ss_pred eEEEEEeCChHHHHHHHHHhccc--eecCceeEEEecCCCCC
Confidence 45688999999999988887755 68899888888765443
No 370
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=23.40 E-value=63 Score=19.70 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=15.7
Q ss_pred ceEEEEecCHHHHHHHHhh
Q psy9170 7 IQAFLEMADECAASTMVTY 25 (94)
Q Consensus 7 nQAfvEm~d~e~A~~~v~~ 25 (94)
+-.++||.|.++|.++.+.
T Consensus 55 ~~viieFpS~~aa~~~~~s 73 (99)
T 2fiu_A 55 RNVVIEFPSVQHAIDCYNS 73 (99)
T ss_dssp EEEEEEESSHHHHHHHHHS
T ss_pred eEEEEECCCHHHHHHHHcC
Confidence 4578999999999887764
No 371
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=23.29 E-value=59 Score=20.76 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=21.7
Q ss_pred CCCCCcEEEEEEcccCCc--eeHhHHHhhhccccce
Q psy9170 53 THSNALLLHLTIGIILRP--ATHYQVHLIRSACQVY 86 (94)
Q Consensus 53 s~~~n~ILL~TI~n~~yp--Itvdvlh~i~s~~g~~ 86 (94)
.++..|||.++ +| --+.-|.++|++||-.
T Consensus 12 ~p~r~HVf~l~-----FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 12 QPKRDHVLHVT-----FPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp CCCCCSEEEEE-----CCTTCCHHHHHHHHTTTCSC
T ss_pred CCCCCeEEEEe-----CChhhhhHHHHHHhhccCCE
Confidence 34568899873 44 6678889999999843
Done!